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(Created page with "{{f5samples |id=FF:11428-118G6 |name=Preadipocyte - subcutaneous, donor3 |sample_id=11428 |rna_tube_id=118G6 |rna_box=118 |rna_position=G6 |sample_cell_lot=N/A |sample...")
 
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{{f5samples
{{f5samples
|id=FF:11428-118G6
|DRA_sample_Accession=CAGE@SAMD00005562
|name=Preadipocyte - subcutaneous, donor3
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005562
|sample_id=11428
|accession_numbers=CAGE;DRX008415;DRR009287;DRZ000712;DRZ002097;DRZ012062;DRZ013447
|rna_tube_id=118G6
|accession_numbers_RNASeq=sRNA-Seq;DRX037188;DRR041554;DRZ007196
|rna_box=118
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002072,UBERON:0002416
|rna_position=G6
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002583
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=1634.00000
|rna_catalog_number=CA802s-R10a
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=60 years old adult
|sample_tissue=adipose tissue
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=60
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=preadipocyte
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=0.52000
|sample_note=
|profile_hcage=CNhs12038,LSID837,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10012,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002334,CL:0002371,CL:0002583
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0002050,UBERON:0002072,UBERON:0002199,UBERON:0002384,UBERON:0002416,UBERON:0002532,UBERON:0003102,UBERON:0004120,UBERON:0005423
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000137,FF:0000142
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.69!54.51!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.53!88.07!OSR1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.52!31.96!ZBED1;;chr9:132427972..132428056,+!p1@PRRX2!1.41!31.96!PRRX2;;chr17:1959369..1959388,+!p2@HIC1!1.38!58.77!HIC1;;chr9:132427883..132427951,+!p2@PRRX2!1.38!22.73!PRRX2;;chr1:170633262..170633285,+!p3@PRRX1!1.33!23.26!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.29!25.04!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!1.28!57.35!TWIST2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.27!17.76!HOXC5;;chr8:25902876..25902936,-!p1@EBF2!1.23!15.80!EBF2;;chr1:170632477..170632506,+!p6@PRRX1!1.21!15.27!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!1.14!14.20!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.12!12.07!IRX2;;chr17:1958388..1958404,+!p1@HIC1!1.11!75.82!HIC1;;chr12:54380036..54380091,+!p4@HOXC10!1.10!11.72!HOXC10;;chr1:170632723..170632739,+!p8@PRRX1!1.10!11.72!PRRX1;;chr12:54393880..54393962,+!p1@HOXC9!1.09!11.19!HOXC9;;chr11:46299199..46299233,+!p1@CREB3L1!1.08!56.64!CREB3L1;;chr2:102091144..102091183,-!p2@RFX8!1.07!10.65!RFX8;;chr11:65687362..65687436,+!p3@DRAP1!1.04!46.34!DRAP1;;chr16:86600426..86600441,+!p1@FOXC2!1.04!24.68!FOXC2;;chr11:46299539..46299620,+!p2@CREB3L1!1.04!17.05!CREB3L1;;chr12:66218255..66218304,+!p3@HMGA2!1.02!25.57!HMGA2;;chr10:131762504..131762555,-!p1@EBF3!1.02!9.59!EBF3;;chr10:64576105..64576133,-!p1@EGR2!1.01!19.18!EGR2;;chr1:170633058..170633084,+!p5@PRRX1!1.00!9.06!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!0.99!15.09!TWIST2;;chr18:19749541..19749557,+!p1@GATA6!0.97!26.99!GATA6;;chr17:46621101..46621143,-!p7@HOXB2!0.97!11.36!HOXB2;;chr17:46621146..46621180,-!p10@HOXB2!0.97!8.35!HOXB2;;chr15:96869255..96869291,+!p6@NR2F2!0.96!15.09!NR2F2;;chr15:67430351..67430366,+!p10@SMAD3!0.96!8.17!SMAD3;;chr1:170632250..170632277,+!p7@PRRX1!0.96!8.17!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!0.95!37.29!HMGA2;;chr7:27205106..27205134,-!p2@HOXA9!0.95!7.81!HOXA9;;chr2:176994408..176994492,+!p1@HOXD8!0.94!7.64!HOXD8;;chr12:54402745..54402788,+!p1@HOXC8!0.94!7.64!HOXC8;;chr15:96876966..96877017,+!p12@NR2F2!0.93!11.01!NR2F2;;chr17:59477233..59477263,+!p1@TBX2!0.92!23.62!TBX2;;chr8:22550982..22550999,-!p1@EGR3!0.90!20.42!EGR3;;chr4:111558135..111558198,-!p2@PITX2!0.89!6.75!PITX2;;chr4:174451370..174451387,-!p1@HAND2!0.88!6.57!HAND2;;chr7:19157248..19157268,-!p1@TWIST1!0.87!18.64!TWIST1;;chr15:96874145..96874166,+!p7@NR2F2!0.87!12.61!NR2F2;;chr18:19749386..19749404,+!p2@GATA6!0.87!9.41!GATA6;;chr1:170632137..170632172,+!p10@PRRX1!0.87!6.39!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.86!6.21!PRRX1;;chr7:27205136..27205164,-!p1@HOXA9!0.86!6.21!HOXA9;;chr11:65686802..65686818,+!p6@DRAP1!0.85!11.01!DRAP1;;chr4:174450089..174450153,-!p2@HAND2!0.84!5.86!HAND2;;chr5:133450365..133450444,+!p1@TCF7!0.83!28.05!TCF7;;chr11:65686732..65686756,+!p2@DRAP1!0.83!26.10!DRAP1;;chr17:46675420..46675465,-!p3@HOXB6!0.83!6.75!HOXB6;;chr7:19157043..19157088,-!p2@TWIST1!0.82!14.74!TWIST1;;chr19:31840130..31840160,-!p2@TSHZ3!0.82!9.06!TSHZ3;;chr11:65687222..65687240,+!p7@DRAP1!0.82!7.28!DRAP1;;chr12:54394309..54394336,+!p2@HOXC9!0.82!5.68!HOXC9;;chr2:102091566..102091581,-!p1@RFX8!0.82!5.68!RFX8;;chr8:49833948..49833973,-!p2@SNAI2!0.81!37.82!SNAI2;;chr15:57511609..57511651,+!p2@TCF12!0.81!9.59!TCF12;;chr17:46622070..46622109,-!p1@HOXB2!0.80!12.61!HOXB2;;chr8:72756063..72756125,-!p1@MSC!0.80!11.19!MSC;;chr16:31076332..31076388,-!p3@ZNF668!0.80!5.33!ZNF668;;chr8:49833978..49833996,-!p1@SNAI2!0.79!115.77!SNAI2;;chr18:53068911..53068935,-!p4@TCF4!0.79!5.86!TCF4;;chr12:54380404..54380433,+!p3@HOXC10!0.79!5.15!HOXC10;;chr12:54402790..54402805,+!p2@HOXC8!0.79!5.15!HOXC8;;chr1:170632115..170632136,+!p9@PRRX1!0.79!5.15!PRRX1;;chr17:59477275..59477286,+!p3@TBX2!0.78!6.92!TBX2;;chr8:72756637..72756664,-!p3@MSC!0.78!5.86!MSC;;chr1:170632683..170632696,+!p12@PRRX1!0.78!4.97!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!0.77!119.32!AEBP1;;chr14:24837368..24837401,+!p1@NFATC4!0.77!12.25!NFATC4;;chr11:65687158..65687216,+!p4@DRAP1!0.76!30.01!DRAP1;;chr15:96874244..96874259,+!p5@NR2F2!0.76!12.43!NR2F2;;chr19:47523058..47523114,+!p1@NPAS1!0.76!4.79!NPAS1;;chr2:119604456..119604501,-!p2@EN1!0.76!4.79!EN1;;chr2:19558327..19558334,-!p2@OSR1!0.76!4.79!OSR1;;chr15:96873984..96873999,+!p3@NR2F2!0.75!37.29!NR2F2;;chr15:96869222..96869251,+!p18@NR2F2!0.75!5.50!NR2F2;;chr14:95236440..95236465,-!p1@GSC!0.75!4.62!GSC;;chr17:46621279..46621297,-!p13@HOXB2!0.75!4.62!HOXB2;;chr12:66218836..66218888,+!p1@HMGA2!0.74!47.05!HMGA2;;chr11:65687243..65687276,+!p8@DRAP1!0.74!6.39!DRAP1;;chr7:44143997..44144008,+!p3@AEBP1!0.74!5.86!AEBP1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.74!4.44!HOXC5;;chr12:54422217..54422239,+!p3@HOXC6!0.74!4.44!HOXC6;;chr15:96869165..96869183,+!p20@NR2F2!0.74!4.44!NR2F2;;chr12:115121962..115121987,-!p1@TBX3!0.73!40.84!TBX3;;chr11:65667884..65667895,-!p2@FOSL1!0.73!18.64!FOSL1;;chr5:321810..321877,+!p1@AHRR!0.73!15.27!AHRR;;chr4:4861385..4861398,+!p1@MSX1!0.73!14.20!MSX1;;chr12:66218212..66218244,+!p5@HMGA2!0.73!6.57!HMGA2;;chr16:86600870..86600921,+!p2@FOXC2!0.72!4.26!FOXC2;;chr5:72744594..72744609,-!p1@FOXD1!0.71!21.31!FOXD1;;chr15:96869114..96869160,+!p11@NR2F2!0.71!5.86!NR2F2;;chr15:96874012..96874042,+!p2@NR2F2!0.70!40.48!NR2F2;;chr7:44143978..44143989,+!p2@AEBP1!0.70!7.81!AEBP1;;chr8:72756267..72756296,-!p4@MSC!0.70!6.21!MSC;;chr6:34204921..34204939,+!p3@HMGA1!0.69!135.12!HMGA1;;chr19:13134772..13134822,+!p2@NFIX!0.69!6.04!NFIX;;chr20:42543441..42543497,+!p1@TOX2!0.68!19.35!TOX2;;chr18:19749517..19749531,+!p3@GATA6!0.67!7.10!GATA6;;chr22:19748231..19748317,+!p1@TBX1!0.67!3.73!TBX1;;chr1:170632762..170632786,+!p13@PRRX1!0.67!3.73!PRRX1;;chr19:31840313..31840380,-!p1@TSHZ3!0.66!10.12!TSHZ3;;chr12:66218183..66218209,+!p4@HMGA2!0.66!7.46!HMGA2;;chr7:27183291..27183324,-!p1@HOXA5!0.66!3.55!HOXA5;;chr15:96874216..96874236,+!p13@NR2F2!0.65!5.68!NR2F2;;chr17:46622114..46622138,-!p4@HOXB2!0.64!5.50!HOXB2;;chr17:46687959..46688007,-!p2@HOXB7!0.64!4.97!HOXB7;;chr17:46675558..46675577,-!p2@HOXB6!0.64!3.37!HOXB6;;chr11:46333934..46333963,+!p5@CREB3L1!0.64!3.37!CREB3L1;;chr2:102091478..102091490,-!p3@RFX8!0.64!3.37!RFX8;;chr8:72756213..72756243,-!p5@MSC!0.62!4.26!MSC;;chr5:3595934..3595957,+!p2@IRX1!0.62!3.20!IRX1;;chr9:1050331..1050363,+!p1@DMRT2!0.62!3.20!DMRT2;;chr15:67430381..67430396,+!p21@SMAD3!0.62!3.20!SMAD3;;chr1:170632310..170632321,+!p15@PRRX1!0.62!3.20!PRRX1;;chr2:121493492..121493537,+!p2@GLI2!0.61!5.50!GLI2;;chr11:120107344..120107351,+!p1@POU2F3!0.61!3.91!POU2F3;;chr5:3595977..3595999,+!p1@IRX1!0.60!3.02!IRX1;;chr7:27183263..27183284,-!p2@HOXA5!0.60!3.02!HOXA5;;chr7:27192185..27192209,-!p1@HOXA3!0.60!3.02!HOXA3;;chr4:111544219..111544240,-!p1@PITX2!0.60!3.02!PITX2;;chr15:96869292..96869320,+!p15@NR2F2!0.59!4.44!NR2F2;;chr20:50179368..50179392,-!p2@NFATC2!0.59!3.91!NFATC2;;chr15:96873921..96873946,+!p1@NR2F2!0.58!96.77!NR2F2;;chr17:46621937..46621966,-!p2@HOXB2!0.58!8.88!HOXB2;;chr17:46688334..46688385,-!p1@HOXB7!0.58!4.44!HOXB7;;chr6:1389789..1389821,+!p1@FOXF2!0.58!4.08!FOXF2;;chr3:157823517..157823562,-!p1@SHOX2!0.58!3.02!SHOX2;;chr10:119302645..119302712,+!p3@EMX2!0.58!2.84!EMX2;;chr10:119303078..119303169,+!p2@EMX2!0.58!2.84!EMX2;;chr12:54394059..54394088,+!p3@HOXC9!0.58!2.84!HOXC9;;chr19:13135386..13135435,+!p4@NFIX!0.58!2.84!NFIX;;chr9:35732647..35732678,+!p2@CREB3!0.57!18.29!CREB3;;chr12:53614115..53614154,-!p1@RARG!0.57!17.76!RARG;;chr12:26277817..26277863,-!p2@BHLHE41!0.57!3.91!BHLHE41;;chr17:3571887..3571918,-!p2@TAX1BP3!0.56!36.93!TAX1BP3;;chr16:86600458..86600461,+!p3@FOXC2!0.56!2.66!FOXC2;;chr17:59477403..59477414,+!p4@TBX2!0.56!2.66!TBX2;;chr1:44513995..44514031,+!p1@KLF17!0.56!2.66!KLF17;;chr19:45260775..45260838,+!p5@BCL3!0.55!3.55!BCL3;;chr6:144329384..144329405,-!p1@PLAGL1!0.54!36.22!PLAGL1;;chr2:121493425..121493474,+!p1@GLI2!0.54!6.39!GLI2;;chr3:5021268..5021282,+!p4@BHLHE40!0.54!5.86!BHLHE40;;chr8:72756667..72756736,-!p2@MSC!0.54!4.26!MSC;;chr3:157824001..157824078,-!p2@SHOX2!0.54!2.49!SHOX2;;chr1:170632028..170632043,+!p20@PRRX1!0.54!2.49!PRRX1;;chr1:170632867..170632878,+!p21@PRRX1!0.54!2.49!PRRX1;;chr10:131762410..131762436,-!p2@EBF3!0.54!2.49!EBF3;;chr12:54402729..54402743,+!p3@HOXC8!0.54!2.49!HOXC8;;chr11:65686855..65686946,+!p1@DRAP1!0.53!233.32!DRAP1;;chr12:26277956..26277980,-!p1@BHLHE41!0.53!10.48!BHLHE41;;chr4:26322267..26322334,+!p3@RBPJ!0.53!6.92!RBPJ;;chr17:61919985..61920012,-!p3@SMARCD2!0.53!6.92!SMARCD2;;chr10:77161133..77161176,-!p3@ZNF503!0.53!6.04!ZNF503;;chr12:80085061..80085119,-!p6@PAWR!0.53!4.26!PAWR;;chr16:86544113..86544145,+!p1@FOXF1!0.53!3.20!FOXF1;;chr2:242576431..242576458,-!p3@THAP4!0.52!6.75!THAP4;;chr15:96875041..96875052,+!p17@NR2F2!0.52!3.73!NR2F2;;chr12:66218904..66218913,+!p11@HMGA2!0.52!2.31!HMGA2;;chr5:2751785..2751808,-!p2@IRX2!0.52!2.31!IRX2;;chr7:1577899..1577943,+!p3@MAFK!0.52!2.31!MAFK;;chr1:170633100..170633112,+!p19@PRRX1!0.52!2.31!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.52!2.31!PRRX1;;chr2:119605214..119605230,-!p1@EN1!0.52!2.31!EN1;;chr9:16705069..16705086,-!p3@BNC2!0.52!2.31!BNC2;;chr5:72744445..72744466,-!p2@FOXD1!0.51!4.26!FOXD1;;chr17:46655704..46655718,-!p2@HOXB4!0.51!3.73!HOXB4;;chr10:64134120..64134183,+!p1@ZNF365!0.51!2.84!ZNF365;;chr19:13106214..13106382,+!p1@NFIX!0.50!66.76!NFIX;;chr22:38598086..38598105,+!p1@MAFF!0.50!30.01!MAFF;;chr6:85474299..85474324,-!p1@TBX18!0.50!4.44!TBX18;;chr17:46622205..46622218,-!p3@HOXB2!0.50!2.66!HOXB2;;chr17:46622229..46622257,-!p6@HOXB2!0.50!2.66!HOXB2;;chr19:31840168..31840186,-!p6@TSHZ3!0.50!2.13!TSHZ3;;chr10:131762385..131762398,-!p4@EBF3!0.50!2.13!EBF3;;chr5:142780237..142780261,-!p7@NR3C1!0.50!2.13!NR3C1;;chr8:72755987..72756002,-!p7@MSC!0.50!2.13!MSC;;chr1:170632907..170632916,+!p22@PRRX1!0.50!2.13!PRRX1;;chr16:54320158..54320200,-!p5@IRX3!0.49!3.37!IRX3;;chr6:45296048..45296082,+!p1@RUNX2!0.49!2.49!RUNX2;;chr8:106330656..106330684,+!p1@ZFPM2!0.48!6.57!ZFPM2;;chr1:221053049..221053075,+!p3@HLX!0.48!4.08!HLX;;chr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I3;;chr6:45390025..45390076,+!p2@RUNX2!0.16!2.31!RUNX2;;chr16:3285119..3285133,-!p2@ZNF200!0.16!1.78!ZNF200;;chr4:146402843..146402864,+!p3@SMAD1!0.16!1.78!SMAD1;;chr11:57103312..57103321,-!p2@SSRP1!0.16!1.60!SSRP1;;chr12:11802932..11802949,+!p3@ETV6!0.16!1.42!ETV6;;chr3:71114115..71114126,-!p14@FOXP1!0.16!1.42!FOXP1;;chr22:38598042..38598052,+!p4@MAFF!0.16!1.24!MAFF;;chr17:20492136..20492165,+!p1@MEIS3P2!0.16!1.24!MEIS3P2;;chr17:42297092..42297112,-!p11@UBTF!0.16!1.24!UBTF;;chr6:21597370..21597408,+!p5@SOX4!0.16!1.24!SOX4;;chr19:12203069..12203094,+!p2@ZNF788!0.16!1.07!ZNF788;;chr20:48807648..48807671,+!p9@CEBPB!0.16!1.07!CEBPB;;chr2:174830540..174830563,-!p8@SP3!0.16!1.07!SP3;;chr19:57078386..57078407,+!p3@ZNF470!0.16!0.89!ZNF470;;chr5:142783365..142783379,-!p10@NR3C1!0.16!0.89!NR3C1;;chr7:27835758..27835772,+!p3@TAX1BP1!0.16!0.89!TAX1BP1;;chrX:66763815..66763854,+!p2@AR!0.16!0.89!AR;;chr1:158985469..158985489,+!p7@IFI16!0.16!0.71!IFI16;;chr1:221052840..221052875,+!p4@HLX!0.16!0.71!HLX;;chr1:221052994..221053008,+!p6@HLX!0.16!0.71!HLX;;chr1:93811637..93811648,+!p6@DR1!0.16!0.71!DR1;;chr5:137804130..137804156,+!p5@EGR1!0.16!0.53!EGR1;;chr6:43140149..43140177,+!p8@SRF!0.16!0.53!SRF;;chr12:10875831..10876025,-!p1@CSDA!0.15!105.83!CSDA;;chr2:28616337..28616355,+!p2@FOSL2!0.15!22.37!FOSL2;;chr19:8579030..8579061,-!p1@ZNF414!0.15!20.06!ZNF414;;chr19:1592828..1592910,-!p2@MBD3!0.15!9.59!MBD3;;chr11:64072981..64073005,+!p2@ESRRA!0.15!7.81!ESRRA;;chr9:139294638..139294678,-!p@chr9:139294638..139294678,-!0.15!6.04!SNAPC4;;chr2:178128149..178128198,-!p2@NFE2L2!0.15!6.04!NFE2L2;;chr2:178129358..178129403,-!p5@NFE2L2!0.15!4.44!NFE2L2;;chr12:53856284..53856299,+!p3@PCBP2!0.15!2.84!PCBP2;;chr19:46272106..46272115,-!p3@SIX5!0.15!2.66!SIX5;;chr7:6676986..6677005,+!p2@ENST00000427912!0.15!2.66!ZNF316;;chr18:3449527..3449582,+!p6@TGIF1!0.15!1.60!TGIF1;;chr3:24536253..24536328,-!p1@THRB!0.15!1.60!THRB;;chr7:137686552..137686564,-!p9@CREB3L2!0.15!1.07!CREB3L2;;chr1:221052700..221052730,+!p5@HLX!0.15!1.07!HLX;;chr19:45972701..45972774,+!p2@FOSB!0.15!0.89!FOSB;;chr19:49864746..49864780,-!p2@TEAD2!0.15!0.89!TEAD2;;chr11:6947647..6947698,+!p2@ZNF215!0.15!0.89!ZNF215;;chr12:72056800..72056834,+!p1@THAP2!0.15!0.89!THAP2;;chr16:67881588..67881612,-!p2@CENPT!0.15!0.89!CENPT;;chr11:8102819..8102845,+!p3@TUB!0.15!0.71!TUB;;chr12:66218003..66218018,+!p9@HMGA2!0.15!0.71!HMGA2;;chr1:23696448..23696453,-!p5@ZNF436!0.15!0.71!ZNF436;;chr5:92919100..92919135,+!p3@NR2F1!0.15!0.71!NR2F1;;chr9:73028462..73028491,-!p8@KLF9!0.15!0.71!KLF9;;chr17:42295955..42295964,-!p22@UBTF!0.15!0.53!UBTF;;chr18:3448314..3448333,+!p18@TGIF1!0.15!0.53!TGIF1;;chr11:57103327..57103372,-!p1@SSRP1!0.14!59.48!SSRP1;;chr11:12695944..12695989,+!p1@TEAD1!0.14!44.39!TEAD1;;chr18:51750948..51751059,-!p1@MBD2!0.14!39.77!MBD2;;chr10:135122380..135122458,+!p1@ZNF511!0.14!37.47!ZNF511;;chr16:67063036..67063088,+!p1@CBFB!0.14!19.71!CBFB;;chr19:4066803..4066886,-!p1@ZBTB7A!0.14!12.78!ZBTB7A;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.14!11.54!ZNF576;;chr10:105110831..105110885,-!p1@PCGF6!0.14!11.36!PCGF6;;chr17:38256822..38256851,-!p1@NR1D1!0.14!9.06!NR1D1;;chr18:45457004..45457043,-!p3@SMAD2!0.14!4.79!SMAD2;;chr2:174828836..174828885,-!p5@SP3!0.14!3.73!SP3;;chr2:27357446..27357475,-!p2@PREB!0.14!3.55!PREB;;chr16:2059754..2059777,-!p2@ZNF598!0.14!3.55!ZNF598;;chr19:44860820..44860843,-!p1@ZFP112,p1@ZNF285!0.14!2.66!ZFP112;;chr6:15246200..15246214,+!p2@JARID2!0.14!2.66!JARID2;;chr2:113993052..113993097,-!p2@PAX8!0.14!1.95!PAX8;;chr4:144435112..144435176,+!p3@SMARCA5!0.14!1.78!SMARCA5;;chr1:42501569..42501614,-!p1@HIVEP3!0.14!1.78!HIVEP3;;chr7:44924939..44924993,-!p2@PURB!0.14!1.60!PURB;;chr19:19779589..19779616,+!p2@ZNF101!0.14!1.60!ZNF101;;chr5:178368186..178368238,+!p1@ZNF454!0.14!1.42!ZNF454;;chr16:1429674..1429703,-!p3@UNKL!0.14!1.24!UNKL;;chr12:80084279..80084293,-!p8@PAWR!0.14!1.24!PAWR;;chr16:54320646..54320672,-!p2@IRX3!0.14!1.07!IRX3;;chr7:28448995..28449011,+!p4@CREB5!0.14!0.89!CREB5;;chrX:56258844..56258882,+!p1@KLF8!0.14!0.89!KLF8;;chr3:44754176..44754196,+!p2@ZNF502!0.14!0.89!ZNF502;;chr5:72744562..72744573,-!p3@FOXD1!0.14!0.71!FOXD1;;chrX:24167800..24167811,+!p3@ZFX!0.14!0.71!ZFX;;chr9:14307229..14307286,-!p10@NFIB!0.14!0.53!NFIB;;chr15:67418119..67418162,+!p5@SMAD3!0.14!0.53!SMAD3;;chr16:31454084..31454115,-!p1@ZNF843!0.14!0.53!ZNF843;;chr16:3333546..3333558,+!p5@ZNF263!0.14!0.53!ZNF263;;chr16:69419724..69419735,-!p4@TERF2!0.14!0.53!TERF2;;chr12:27485733..27485742,+!p5@ARNTL2!0.14!0.53!ARNTL2;;chr5:149380256..149380343,+!p1@HMGXB3!0.13!35.33!HMGXB3;;chr16:67867749..67867852,-!p1@CENPT!0.13!27.17!CENPT;;chr16:29817617..29817664,+!p4@MAZ!0.13!12.25!MAZ;;chr17:17740330..17740349,-!p3@SREBF1!0.13!7.28!SREBF1;;chr13:45151259..45151326,-!p2@TSC22D1!0.13!6.57!TSC22D1;;chr20:42295713..42295738,+!p2@MYBL2!0.13!6.39!MYBL2;;chr19:35264089..35264146,-!p1@ZNF599!0.13!5.50!ZNF599;;chr10:35415882..35415941,+!p4@CREM!0.13!4.62!CREM;;chr18:22932080..22932170,-!p1@ZNF521!0.13!4.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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002334;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002583;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520subcutaneous%252c%2520donor3.CNhs12038.11428-118G6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520subcutaneous%252c%2520donor3.CNhs12038.11428-118G6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520subcutaneous%252c%2520donor3.CNhs12038.11428-118G6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520subcutaneous%252c%2520donor3.CNhs12038.11428-118G6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520subcutaneous%252c%2520donor3.CNhs12038.11428-118G6.hg38.nobarcode.ctss.bed.gz
|id=FF:11428-118G6
|is_a=EFO:0002091;;FF:0000142
|is_obsolete=
|library_id=CNhs12038
|library_id_phase_based=2:CNhs12038
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11428
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.ACTTGA.11428
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11428
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.ACTTGA.11428
|name=Preadipocyte - subcutaneous, donor3
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12038,LSID837,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10012,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=118
|rna_catalog_number=CA802s-R10a
|rna_concentration=0.52
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=1634
|rna_od260/230=
|rna_od260/280=
|rna_position=G6
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=118G6
|rna_weight_ug=10
|rnaseq_library_id=SRhi10012.ACTTGA
|sample_age=60
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=preadipocyte
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=60 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.11769951534287e-214!GO:0005737;cytoplasm;1.02771348028205e-187!GO:0043231;intracellular membrane-bound organelle;2.24127887365448e-170!GO:0043227;membrane-bound organelle;5.13369993849987e-170!GO:0043226;organelle;3.22720800474793e-169!GO:0043229;intracellular organelle;7.82805552510706e-169!GO:0044444;cytoplasmic part;3.94954502847448e-141!GO:0044422;organelle part;1.60635042215935e-134!GO:0044446;intracellular organelle part;3.39679459899439e-133!GO:0032991;macromolecular complex;8.09355513628379e-97!GO:0030529;ribonucleoprotein complex;1.5072858768582e-87!GO:0044237;cellular metabolic process;3.50771944973921e-77!GO:0044238;primary metabolic process;1.2622916858805e-76!GO:0005515;protein binding;4.37619724699933e-76!GO:0005739;mitochondrion;1.58163007635407e-70!GO:0043170;macromolecule metabolic process;3.60392686824647e-70!GO:0043233;organelle lumen;2.76115052009009e-69!GO:0031974;membrane-enclosed lumen;2.76115052009009e-69!GO:0044428;nuclear part;9.8634364792016e-63!GO:0003723;RNA binding;3.31043920135485e-61!GO:0005634;nucleus;9.68157430751737e-56!GO:0005840;ribosome;7.43918524018452e-55!GO:0031090;organelle membrane;1.58927659507749e-50!GO:0006412;translation;2.11059245417414e-50!GO:0019538;protein metabolic process;1.49662314930457e-48!GO:0003735;structural constituent of ribosome;3.11437360754138e-48!GO:0043234;protein complex;1.28592302973957e-47!GO:0044429;mitochondrial part;2.16793014392901e-46!GO:0006396;RNA processing;9.62775749661756e-45!GO:0009058;biosynthetic process;4.02476868105911e-44!GO:0016043;cellular component organization and biogenesis;6.7198799325016e-44!GO:0044260;cellular macromolecule metabolic process;3.39340196335899e-43!GO:0044267;cellular protein metabolic process;2.50058078319162e-42!GO:0044249;cellular biosynthetic process;1.56002124444008e-41!GO:0033279;ribosomal subunit;2.17306582304013e-41!GO:0009059;macromolecule biosynthetic process;1.56487438797297e-40!GO:0005829;cytosol;2.4420634091135e-40!GO:0015031;protein transport;2.72689047441673e-40!GO:0031967;organelle envelope;3.28394029693375e-39!GO:0033036;macromolecule localization;5.09905388550143e-39!GO:0031975;envelope;5.18804354409578e-39!GO:0031981;nuclear lumen;1.00524250432602e-38!GO:0045184;establishment of protein localization;3.22484893689337e-37!GO:0008104;protein localization;2.84180982123562e-36!GO:0043283;biopolymer metabolic process;1.03123998030625e-33!GO:0046907;intracellular transport;5.37217122350282e-33!GO:0016071;mRNA metabolic process;1.18592731540146e-32!GO:0010467;gene expression;1.22790399044607e-31!GO:0008380;RNA splicing;2.18832834770877e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.47526945138975e-31!GO:0005740;mitochondrial envelope;1.16537517939731e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.03998341468302e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.07575146205756e-29!GO:0065003;macromolecular complex assembly;4.09142503077252e-29!GO:0031966;mitochondrial membrane;6.4469417443918e-29!GO:0006397;mRNA processing;1.58626959943816e-28!GO:0006996;organelle organization and biogenesis;5.3830951547124e-28!GO:0019866;organelle inner membrane;5.3830951547124e-28!GO:0043228;non-membrane-bound organelle;5.97449622997239e-28!GO:0043232;intracellular non-membrane-bound organelle;5.97449622997239e-28!GO:0006886;intracellular protein transport;1.58235125024225e-27!GO:0022607;cellular component assembly;4.88210426158185e-27!GO:0005743;mitochondrial inner membrane;1.73513362628786e-26!GO:0006119;oxidative phosphorylation;5.63613877452585e-23!GO:0044445;cytosolic part;6.29157045317904e-23!GO:0005783;endoplasmic reticulum;1.26421748180985e-22!GO:0015934;large ribosomal subunit;1.89932839265291e-22!GO:0005681;spliceosome;2.31086620443032e-22!GO:0005654;nucleoplasm;2.41517563553911e-22!GO:0044455;mitochondrial membrane part;7.99633945874907e-22!GO:0006259;DNA metabolic process;2.01552575352056e-21!GO:0051649;establishment of cellular localization;2.54704009424864e-20!GO:0051641;cellular localization;2.99539514256465e-20!GO:0006457;protein folding;3.55193221338716e-20!GO:0015935;small ribosomal subunit;6.01003232072392e-20!GO:0012505;endomembrane system;1.3540668843781e-19!GO:0031980;mitochondrial lumen;1.18011962183066e-18!GO:0005759;mitochondrial matrix;1.18011962183066e-18!GO:0044432;endoplasmic reticulum part;2.04455556475447e-18!GO:0007049;cell cycle;3.5102088154476e-18!GO:0005746;mitochondrial respiratory chain;4.56220685016795e-18!GO:0044451;nucleoplasm part;4.61208719712348e-18!GO:0005730;nucleolus;9.61758050498995e-18!GO:0016462;pyrophosphatase activity;1.73470878699043e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.91004429075863e-17!GO:0022618;protein-RNA complex assembly;3.0261435106756e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;3.0261435106756e-17!GO:0048770;pigment granule;3.32315365773365e-17!GO:0042470;melanosome;3.32315365773365e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.25677814434385e-17!GO:0000502;proteasome complex (sensu Eukaryota);4.38244747322476e-17!GO:0051186;cofactor metabolic process;7.78955307751346e-17!GO:0017111;nucleoside-triphosphatase activity;1.18172548943835e-16!GO:0000166;nucleotide binding;2.1807505590963e-16!GO:0005794;Golgi apparatus;4.02970772973973e-16!GO:0043285;biopolymer catabolic process;4.6347323328709e-16!GO:0005761;mitochondrial ribosome;4.9857254590192e-16!GO:0000313;organellar ribosome;4.9857254590192e-16!GO:0050136;NADH dehydrogenase (quinone) activity;6.52545441223615e-16!GO:0003954;NADH dehydrogenase activity;6.52545441223615e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.52545441223615e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.16389952461574e-15!GO:0044265;cellular macromolecule catabolic process;5.56607273344995e-15!GO:0009057;macromolecule catabolic process;7.99065465430526e-15!GO:0008135;translation factor activity, nucleic acid binding;9.57802178447589e-15!GO:0042254;ribosome biogenesis and assembly;1.50944081951911e-14!GO:0051082;unfolded protein binding;1.99651651175209e-14!GO:0008134;transcription factor binding;2.70988256004338e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.23069373255146e-14!GO:0048193;Golgi vesicle transport;3.42090683705869e-14!GO:0016874;ligase activity;3.62953507333968e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.92922752546712e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;4.05542657156966e-14!GO:0003676;nucleic acid binding;4.21376313800712e-14!GO:0030964;NADH dehydrogenase complex (quinone);4.41050945905775e-14!GO:0045271;respiratory chain complex I;4.41050945905775e-14!GO:0005747;mitochondrial respiratory chain complex I;4.41050945905775e-14!GO:0030163;protein catabolic process;4.64826564685779e-14!GO:0022402;cell cycle process;4.91679214386873e-14!GO:0042775;organelle ATP synthesis coupled electron transport;4.96770869246141e-14!GO:0042773;ATP synthesis coupled electron transport;4.96770869246141e-14!GO:0019941;modification-dependent protein catabolic process;7.25112770928934e-14!GO:0043632;modification-dependent macromolecule catabolic process;7.25112770928934e-14!GO:0044257;cellular protein catabolic process;8.77904744022339e-14!GO:0000278;mitotic cell cycle;9.71387677879313e-14!GO:0044248;cellular catabolic process;1.01662156278535e-13!GO:0006511;ubiquitin-dependent protein catabolic process;1.14049588721358e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.33210570219285e-13!GO:0006605;protein targeting;1.33210570219285e-13!GO:0006512;ubiquitin cycle;2.83794168577964e-13!GO:0006732;coenzyme metabolic process;4.3205021526426e-13!GO:0005793;ER-Golgi intermediate compartment;7.27775369132888e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.66888396926911e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;2.22694271755459e-12!GO:0000375;RNA splicing, via transesterification reactions;2.22694271755459e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.22694271755459e-12!GO:0005789;endoplasmic reticulum membrane;5.56347129933988e-12!GO:0006974;response to DNA damage stimulus;5.93924849820933e-12!GO:0003743;translation initiation factor activity;6.54198976055121e-12!GO:0009055;electron carrier activity;1.88671724505779e-11!GO:0016070;RNA metabolic process;2.23209175783025e-11!GO:0006413;translational initiation;4.02860964127394e-11!GO:0017076;purine nucleotide binding;4.27800030883828e-11!GO:0032553;ribonucleotide binding;4.49666996984441e-11!GO:0032555;purine ribonucleotide binding;4.49666996984441e-11!GO:0009259;ribonucleotide metabolic process;6.03769253937809e-11!GO:0016192;vesicle-mediated transport;8.37627130696115e-11!GO:0006163;purine nucleotide metabolic process;1.49769546631109e-10!GO:0012501;programmed cell death;1.57230599182169e-10!GO:0006915;apoptosis;2.88358676455651e-10!GO:0009150;purine ribonucleotide metabolic process;4.13097288917062e-10!GO:0005694;chromosome;4.84522021886587e-10!GO:0006164;purine nucleotide biosynthetic process;5.91949666236679e-10!GO:0006399;tRNA metabolic process;6.35758568098519e-10!GO:0009260;ribonucleotide biosynthetic process;6.3726034674475e-10!GO:0005788;endoplasmic reticulum lumen;6.94435767806011e-10!GO:0048523;negative regulation of cellular process;9.76048875578355e-10!GO:0043412;biopolymer modification;1.00968223437457e-09!GO:0006364;rRNA processing;1.02208589237952e-09!GO:0006446;regulation of translational initiation;1.12287191666277e-09!GO:0016491;oxidoreductase activity;1.22752425826798e-09!GO:0000087;M phase of mitotic cell cycle;1.41648681590715e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.41648681590715e-09!GO:0005635;nuclear envelope;1.43732315421535e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.53689297893388e-09!GO:0006281;DNA repair;1.81272479076886e-09!GO:0007067;mitosis;1.8206069733783e-09!GO:0016072;rRNA metabolic process;1.84533987518954e-09!GO:0009719;response to endogenous stimulus;1.91893483719041e-09!GO:0006260;DNA replication;2.1348582351127e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.20924416041148e-09!GO:0031965;nuclear membrane;2.90867143179324e-09!GO:0008219;cell death;2.91654975065184e-09!GO:0016265;death;2.91654975065184e-09!GO:0003712;transcription cofactor activity;3.28232066806798e-09!GO:0000074;regulation of progression through cell cycle;3.34211130431727e-09!GO:0044427;chromosomal part;3.49591977839366e-09!GO:0022403;cell cycle phase;3.62278475452023e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.86592365598027e-09!GO:0051726;regulation of cell cycle;3.97542301019441e-09!GO:0009141;nucleoside triphosphate metabolic process;3.99561535945679e-09!GO:0016604;nuclear body;4.49627736835663e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.40192337359398e-09!GO:0009144;purine nucleoside triphosphate metabolic process;6.40192337359398e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.6417350619756e-09!GO:0044453;nuclear membrane part;8.80278812036707e-09!GO:0005524;ATP binding;1.08507307485002e-08!GO:0009056;catabolic process;1.10946026486179e-08!GO:0006464;protein modification process;1.22961722786926e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.96129171881768e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.96129171881768e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.15022789206496e-08!GO:0032559;adenyl ribonucleotide binding;2.22870397442589e-08!GO:0006913;nucleocytoplasmic transport;2.40562633820475e-08!GO:0009060;aerobic respiration;2.51418872066604e-08!GO:0015986;ATP synthesis coupled proton transport;2.68647843946026e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.68647843946026e-08!GO:0030554;adenyl nucleotide binding;2.68917670404513e-08!GO:0051188;cofactor biosynthetic process;2.72361214510499e-08!GO:0048519;negative regulation of biological process;3.14060906860414e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.26941366887029e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.26941366887029e-08!GO:0051276;chromosome organization and biogenesis;3.60056289317138e-08!GO:0006461;protein complex assembly;4.3583943867824e-08!GO:0016887;ATPase activity;4.59632777189063e-08!GO:0051169;nuclear transport;4.81830016135488e-08!GO:0009117;nucleotide metabolic process;5.07588394331394e-08!GO:0008565;protein transporter activity;6.1760999867706e-08!GO:0008639;small protein conjugating enzyme activity;6.67293225669031e-08!GO:0045333;cellular respiration;6.75158262489622e-08!GO:0030532;small nuclear ribonucleoprotein complex;8.91473959889077e-08!GO:0005768;endosome;8.92531709024555e-08!GO:0042623;ATPase activity, coupled;9.36896427987112e-08!GO:0046034;ATP metabolic process;1.11687299384759e-07!GO:0065004;protein-DNA complex assembly;1.35782303342569e-07!GO:0003924;GTPase activity;1.39814755274779e-07!GO:0007005;mitochondrion organization and biogenesis;1.43029114855434e-07!GO:0004842;ubiquitin-protein ligase activity;1.47875009992293e-07!GO:0051301;cell division;1.58885208356661e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.71509390394472e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.71509390394472e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.71509390394472e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.81297048856056e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.8227278265843e-07!GO:0019787;small conjugating protein ligase activity;1.83658046566576e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.10256659559477e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.28615905091721e-07!GO:0030120;vesicle coat;2.28652659052454e-07!GO:0030662;coated vesicle membrane;2.28652659052454e-07!GO:0019829;cation-transporting ATPase activity;2.33553724407661e-07!GO:0065002;intracellular protein transport across a membrane;2.41369413718747e-07!GO:0051246;regulation of protein metabolic process;2.79510598400032e-07!GO:0043038;amino acid activation;2.8280886036357e-07!GO:0006418;tRNA aminoacylation for protein translation;2.8280886036357e-07!GO:0043039;tRNA aminoacylation;2.8280886036357e-07!GO:0016607;nuclear speck;3.75254426191324e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.0769896270096e-07!GO:0042981;regulation of apoptosis;4.20522624312098e-07!GO:0044431;Golgi apparatus part;4.30531638573667e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.88358797658197e-07!GO:0043067;regulation of programmed cell death;4.97521000955732e-07!GO:0006754;ATP biosynthetic process;4.97521000955732e-07!GO:0006753;nucleoside phosphate metabolic process;4.97521000955732e-07!GO:0006323;DNA packaging;5.13134033509296e-07!GO:0051187;cofactor catabolic process;5.27480759265779e-07!GO:0017038;protein import;5.44444175392416e-07!GO:0006099;tricarboxylic acid cycle;5.44444175392416e-07!GO:0046356;acetyl-CoA catabolic process;5.44444175392416e-07!GO:0006366;transcription from RNA polymerase II promoter;5.66745683738529e-07!GO:0043687;post-translational protein modification;5.99200115344834e-07!GO:0005643;nuclear pore;6.40878912620398e-07!GO:0000279;M phase;6.95341186240933e-07!GO:0003697;single-stranded DNA binding;7.92687747763809e-07!GO:0043069;negative regulation of programmed cell death;8.55087787858744e-07!GO:0005773;vacuole;8.87612076127542e-07!GO:0006333;chromatin assembly or disassembly;1.02653213320232e-06!GO:0003714;transcription corepressor activity;1.16244831900575e-06!GO:0043566;structure-specific DNA binding;1.16877193166215e-06!GO:0043066;negative regulation of apoptosis;1.18809548059019e-06!GO:0006084;acetyl-CoA metabolic process;1.32921334974882e-06!GO:0016881;acid-amino acid ligase activity;1.35224523860268e-06!GO:0016787;hydrolase activity;1.60519912029257e-06!GO:0048475;coated membrane;1.66407527880302e-06!GO:0030117;membrane coat;1.66407527880302e-06!GO:0009108;coenzyme biosynthetic process;1.69929089777863e-06!GO:0009109;coenzyme catabolic process;1.75418863466195e-06!GO:0005762;mitochondrial large ribosomal subunit;1.82257837011667e-06!GO:0000315;organellar large ribosomal subunit;1.82257837011667e-06!GO:0004298;threonine endopeptidase activity;2.11917161829256e-06!GO:0006334;nucleosome assembly;2.16955148005847e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.17313133361958e-06!GO:0044440;endosomal part;2.55062540985567e-06!GO:0010008;endosome membrane;2.55062540985567e-06!GO:0045259;proton-transporting ATP synthase complex;2.77463380241884e-06!GO:0000785;chromatin;2.80042982301365e-06!GO:0006916;anti-apoptosis;3.56093196719859e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.72847123379965e-06!GO:0008026;ATP-dependent helicase activity;4.7260039633364e-06!GO:0016853;isomerase activity;5.37621452524867e-06!GO:0005667;transcription factor complex;5.73245511251313e-06!GO:0046930;pore complex;6.05571857889655e-06!GO:0031497;chromatin assembly;6.3594139542402e-06!GO:0031324;negative regulation of cellular metabolic process;6.97197411627366e-06!GO:0045454;cell redox homeostasis;7.33198078393237e-06!GO:0016564;transcription repressor activity;7.75086197554861e-06!GO:0006403;RNA localization;7.92346175030959e-06!GO:0000323;lytic vacuole;7.93709101986821e-06!GO:0005764;lysosome;7.93709101986821e-06!GO:0004386;helicase activity;7.9816287603235e-06!GO:0006752;group transfer coenzyme metabolic process;8.18070637777809e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.24650935386956e-06!GO:0050657;nucleic acid transport;9.45357303668663e-06!GO:0051236;establishment of RNA localization;9.45357303668663e-06!GO:0050658;RNA transport;9.45357303668663e-06!GO:0005770;late endosome;9.86249736443016e-06!GO:0000245;spliceosome assembly;1.02981839075476e-05!GO:0006613;cotranslational protein targeting to membrane;1.11307100630117e-05!GO:0050794;regulation of cellular process;1.3941963948227e-05!GO:0005525;GTP binding;1.61698559618432e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.93216558526271e-05!GO:0032446;protein modification by small protein conjugation;2.02684994469416e-05!GO:0016859;cis-trans isomerase activity;2.07927139658049e-05!GO:0045786;negative regulation of progression through cell cycle;2.17157419750858e-05!GO:0006091;generation of precursor metabolites and energy;2.17487272245305e-05!GO:0000139;Golgi membrane;2.23078213783463e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.24985257114436e-05!GO:0008361;regulation of cell size;2.44065549519965e-05!GO:0016567;protein ubiquitination;2.7405840522486e-05!GO:0016049;cell growth;2.96541615223262e-05!GO:0016779;nucleotidyltransferase activity;3.10498882571815e-05!GO:0031252;leading edge;3.73946541040617e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.85786227127406e-05!GO:0001558;regulation of cell growth;3.92355881149722e-05!GO:0030867;rough endoplasmic reticulum membrane;4.00276711261341e-05!GO:0008654;phospholipid biosynthetic process;4.16307416683536e-05!GO:0015630;microtubule cytoskeleton;4.64665026236885e-05!GO:0031988;membrane-bound vesicle;4.90076452439352e-05!GO:0005798;Golgi-associated vesicle;5.03053946814872e-05!GO:0000151;ubiquitin ligase complex;5.1475505009417e-05!GO:0016740;transferase activity;5.3997363838034e-05!GO:0019867;outer membrane;6.67660552306277e-05!GO:0009892;negative regulation of metabolic process;6.71642196562799e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.54925947069873e-05!GO:0033116;ER-Golgi intermediate compartment membrane;7.67802713277314e-05!GO:0051329;interphase of mitotic cell cycle;7.94447130316824e-05!GO:0005048;signal sequence binding;7.99446869420107e-05!GO:0031968;organelle outer membrane;8.27749512603565e-05!GO:0051789;response to protein stimulus;8.32778892786434e-05!GO:0006986;response to unfolded protein;8.32778892786434e-05!GO:0000314;organellar small ribosomal subunit;0.000103212743776678!GO:0005763;mitochondrial small ribosomal subunit;0.000103212743776678!GO:0048522;positive regulation of cellular process;0.000103845148856245!GO:0032561;guanyl ribonucleotide binding;0.000120474917376633!GO:0019001;guanyl nucleotide binding;0.000120474917376633!GO:0009165;nucleotide biosynthetic process;0.000121132825875541!GO:0030036;actin cytoskeleton organization and biogenesis;0.000123855618744678!GO:0003724;RNA helicase activity;0.000125286407567481!GO:0006793;phosphorus metabolic process;0.000125751668026288!GO:0006796;phosphate metabolic process;0.000125751668026288!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000125751668026288!GO:0005905;coated pit;0.000131821267876982!GO:0043021;ribonucleoprotein binding;0.000138788828999658!GO:0006612;protein targeting to membrane;0.000140513650125403!GO:0043623;cellular protein complex assembly;0.000149717445431356!GO:0015980;energy derivation by oxidation of organic compounds;0.000174574407236168!GO:0051028;mRNA transport;0.000176490277318902!GO:0051170;nuclear import;0.000188135845582775!GO:0005813;centrosome;0.000215769170734798!GO:0005769;early endosome;0.000218753675528062!GO:0006261;DNA-dependent DNA replication;0.000253084089181427!GO:0004576;oligosaccharyl transferase activity;0.000254410154397314!GO:0016563;transcription activator activity;0.000256593465989634!GO:0005741;mitochondrial outer membrane;0.000262785686860166!GO:0006606;protein import into nucleus;0.00026559339096077!GO:0003899;DNA-directed RNA polymerase activity;0.000281572266093836!GO:0005885;Arp2/3 protein complex;0.000289749365189413!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000294583027700004!GO:0031982;vesicle;0.00029957787879753!GO:0043681;protein import into mitochondrion;0.000321701860032419!GO:0008250;oligosaccharyl transferase complex;0.000324342915177307!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00032780682302136!GO:0031410;cytoplasmic vesicle;0.000347050393719783!GO:0006626;protein targeting to mitochondrion;0.000347578773177105!GO:0006839;mitochondrial transport;0.000348847344330104!GO:0051325;interphase;0.000349574043891309!GO:0005815;microtubule organizing center;0.000362010934375853!GO:0016310;phosphorylation;0.000425017350860099!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000437899242568761!GO:0044262;cellular carbohydrate metabolic process;0.000438924658396017!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00044138463701503!GO:0016568;chromatin modification;0.000450844513114256!GO:0030663;COPI coated vesicle membrane;0.00050057996278455!GO:0030126;COPI vesicle coat;0.00050057996278455!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00053525271005721!GO:0018196;peptidyl-asparagine modification;0.000568584047165956!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000568584047165956!GO:0007050;cell cycle arrest;0.000568584047165956!GO:0046474;glycerophospholipid biosynthetic process;0.000616650222048672!GO:0008033;tRNA processing;0.000689929882374142!GO:0005819;spindle;0.00070711773279489!GO:0019843;rRNA binding;0.000712311894025964!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000730049379257248!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000755359467988202!GO:0019899;enzyme binding;0.000780265702241206!GO:0030029;actin filament-based process;0.000809604911190901!GO:0051920;peroxiredoxin activity;0.000846361313174689!GO:0007006;mitochondrial membrane organization and biogenesis;0.000923374504601615!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000923566341168273!GO:0003713;transcription coactivator activity;0.0009604445817585!GO:0016481;negative regulation of transcription;0.000969360699556623!GO:0051427;hormone receptor binding;0.000974740478745937!GO:0005791;rough endoplasmic reticulum;0.00100193742309386!GO:0031072;heat shock protein binding;0.00100220744881752!GO:0050789;regulation of biological process;0.00104598488030698!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00114798770308928!GO:0003729;mRNA binding;0.00116497212474754!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00119429463885365!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00119429463885365!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00119429463885365!GO:0046483;heterocycle metabolic process;0.00119929217872081!GO:0007010;cytoskeleton organization and biogenesis;0.00124015147738658!GO:0016363;nuclear matrix;0.0012782073559201!GO:0030133;transport vesicle;0.00128682432328881!GO:0051252;regulation of RNA metabolic process;0.00136672005028518!GO:0044452;nucleolar part;0.0013768294006979!GO:0006414;translational elongation;0.00148122322417899!GO:0030137;COPI-coated vesicle;0.00149680273865332!GO:0006979;response to oxidative stress;0.0015095499724347!GO:0006950;response to stress;0.0016076043309136!GO:0016126;sterol biosynthetic process;0.00168963323922351!GO:0008186;RNA-dependent ATPase activity;0.00182389908742259!GO:0006891;intra-Golgi vesicle-mediated transport;0.00183441590778042!GO:0035257;nuclear hormone receptor binding;0.00190397305644108!GO:0000075;cell cycle checkpoint;0.00205124582688105!GO:0030176;integral to endoplasmic reticulum membrane;0.00208008117885124!GO:0000082;G1/S transition of mitotic cell cycle;0.00212969571814808!GO:0043284;biopolymer biosynthetic process;0.00217528169030033!GO:0008610;lipid biosynthetic process;0.00225066783906116!GO:0048500;signal recognition particle;0.00225475239166372!GO:0007051;spindle organization and biogenesis;0.00242095718567468!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00242824228788168!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00245287651623431!GO:0006383;transcription from RNA polymerase III promoter;0.00257111874908647!GO:0043488;regulation of mRNA stability;0.00257638070638689!GO:0043487;regulation of RNA stability;0.00257638070638689!GO:0051168;nuclear export;0.00258952493509171!GO:0000775;chromosome, pericentric region;0.00265585654838922!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00267050675451216!GO:0000786;nucleosome;0.00285441418383547!GO:0040008;regulation of growth;0.00296263221159963!GO:0007243;protein kinase cascade;0.00297552513553623!GO:0030880;RNA polymerase complex;0.00297552513553623!GO:0003690;double-stranded DNA binding;0.0030863186460866!GO:0008180;signalosome;0.00324296208344011!GO:0042802;identical protein binding;0.00324618888287523!GO:0046489;phosphoinositide biosynthetic process;0.00340185998144783!GO:0048144;fibroblast proliferation;0.0038273815633998!GO:0048145;regulation of fibroblast proliferation;0.0038273815633998!GO:0008312;7S RNA binding;0.00395582899772411!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00419222441360784!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00419222441360784!GO:0005657;replication fork;0.00425044871738457!GO:0048518;positive regulation of biological process;0.00430735385276092!GO:0004004;ATP-dependent RNA helicase activity;0.00431797742646192!GO:0048487;beta-tubulin binding;0.00451808153797268!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00451808153797268!GO:0015002;heme-copper terminal oxidase activity;0.00451808153797268!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00451808153797268!GO:0004129;cytochrome-c oxidase activity;0.00451808153797268!GO:0006740;NADPH regeneration;0.00478688259858735!GO:0006098;pentose-phosphate shunt;0.00478688259858735!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00478688259858735!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00478688259858735!GO:0030132;clathrin coat of coated pit;0.00479698531131371!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00481235658466603!GO:0045047;protein targeting to ER;0.00481235658466603!GO:0008047;enzyme activator activity;0.00491747854668095!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00493257054221554!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00493257054221554!GO:0003684;damaged DNA binding;0.00514185337241206!GO:0065009;regulation of a molecular function;0.00526933467031561!GO:0048471;perinuclear region of cytoplasm;0.00569048026532982!GO:0022890;inorganic cation transmembrane transporter activity;0.0057220289581253!GO:0017166;vinculin binding;0.00574299333568462!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00585025742926528!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00594274624027499!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00601739022594642!GO:0048146;positive regulation of fibroblast proliferation;0.00603635340845883!GO:0005684;U2-dependent spliceosome;0.00626403301423814!GO:0006595;polyamine metabolic process;0.00635426646565144!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00635507937339431!GO:0000428;DNA-directed RNA polymerase complex;0.00635507937339431!GO:0005869;dynactin complex;0.00714867684163204!GO:0008632;apoptotic program;0.0072414648168834!GO:0008243;plasminogen activator activity;0.00729116347011029!GO:0009116;nucleoside metabolic process;0.00730321614982075!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00738929791995947!GO:0051087;chaperone binding;0.00758797669814406!GO:0030027;lamellipodium;0.00760368457074182!GO:0019752;carboxylic acid metabolic process;0.00760368457074182!GO:0006082;organic acid metabolic process;0.00760368457074182!GO:0000049;tRNA binding;0.00760966248932699!GO:0008094;DNA-dependent ATPase activity;0.00766145411580947!GO:0004527;exonuclease activity;0.00803526423200169!GO:0006778;porphyrin metabolic process;0.00804161574335571!GO:0033013;tetrapyrrole metabolic process;0.00804161574335571!GO:0006509;membrane protein ectodomain proteolysis;0.00804614534606303!GO:0033619;membrane protein proteolysis;0.00804614534606303!GO:0046467;membrane lipid biosynthetic process;0.00818117177262135!GO:0030127;COPII vesicle coat;0.00828400968627032!GO:0012507;ER to Golgi transport vesicle membrane;0.00828400968627032!GO:0015631;tubulin binding;0.00869629358581412!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00881054162248108!GO:0015399;primary active transmembrane transporter activity;0.00881054162248108!GO:0031418;L-ascorbic acid binding;0.00893370990787167!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00893370990787167!GO:0030658;transport vesicle membrane;0.0091137665467218!GO:0016044;membrane organization and biogenesis;0.00919674249555657!GO:0015992;proton transport;0.00924896830168567!GO:0031902;late endosome membrane;0.00924896830168567!GO:0051052;regulation of DNA metabolic process;0.00947618595448172!GO:0007040;lysosome organization and biogenesis;0.00957509534371349!GO:0008092;cytoskeletal protein binding;0.00957509534371349!GO:0043022;ribosome binding;0.00993032583094528!GO:0006818;hydrogen transport;0.0101911483043254!GO:0009112;nucleobase metabolic process;0.0102446395054595!GO:0008154;actin polymerization and/or depolymerization;0.010460767267391!GO:0004177;aminopeptidase activity;0.010460767267391!GO:0006401;RNA catabolic process;0.0107358365066245!GO:0031543;peptidyl-proline dioxygenase activity;0.0107358365066245!GO:0007179;transforming growth factor beta receptor signaling pathway;0.010902280158951!GO:0007088;regulation of mitosis;0.0109061341062376!GO:0030134;ER to Golgi transport vesicle;0.0112020076854053!GO:0019798;procollagen-proline dioxygenase activity;0.0114193182604046!GO:0000059;protein import into nucleus, docking;0.0114896994850505!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0114896994850505!GO:0008139;nuclear localization sequence binding;0.0115131454825419!GO:0030041;actin filament polymerization;0.0117551663442311!GO:0006402;mRNA catabolic process;0.0119656806185752!GO:0007033;vacuole organization and biogenesis;0.0121225048934834!GO:0016272;prefoldin complex;0.0124847861714154!GO:0006650;glycerophospholipid metabolic process;0.0124858477638346!GO:0005862;muscle thin filament tropomyosin;0.0124935741966007!GO:0003746;translation elongation factor activity;0.0128992884614525!GO:0050662;coenzyme binding;0.0130237211311524!GO:0001726;ruffle;0.013391368154583!GO:0048468;cell development;0.0135810456776667!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0136016055647337!GO:0022408;negative regulation of cell-cell adhesion;0.0136662936014257!GO:0009967;positive regulation of signal transduction;0.0136662936014257!GO:0005832;chaperonin-containing T-complex;0.0139065182162991!GO:0006302;double-strand break repair;0.0140550610909717!GO:0016197;endosome transport;0.0146194032516093!GO:0008168;methyltransferase activity;0.0148925020611138!GO:0031901;early endosome membrane;0.0149860861931793!GO:0006275;regulation of DNA replication;0.0150304543548738!GO:0003711;transcription elongation regulator activity;0.0154088085729977!GO:0030145;manganese ion binding;0.016462830519089!GO:0006220;pyrimidine nucleotide metabolic process;0.0164737201464483!GO:0016408;C-acyltransferase activity;0.0164958415671153!GO:0000339;RNA cap binding;0.0165306053141015!GO:0006695;cholesterol biosynthetic process;0.0165306053141015!GO:0001527;microfibril;0.0165506930931343!GO:0030118;clathrin coat;0.0167078977747672!GO:0005801;cis-Golgi network;0.0169032179676182!GO:0035258;steroid hormone receptor binding;0.0169248154928556!GO:0005774;vacuolar membrane;0.0169321337776327!GO:0016741;transferase activity, transferring one-carbon groups;0.0171056578156385!GO:0032508;DNA duplex unwinding;0.0171056578156385!GO:0032392;DNA geometric change;0.0171056578156385!GO:0019206;nucleoside kinase activity;0.0171101690066476!GO:0042168;heme metabolic process;0.0174616763369431!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.018200852904456!GO:0030660;Golgi-associated vesicle membrane;0.0184173814315258!GO:0000178;exosome (RNase complex);0.0184828903014212!GO:0051287;NAD binding;0.0185339389955023!GO:0045936;negative regulation of phosphate metabolic process;0.0190218914635507!GO:0045941;positive regulation of transcription;0.0192279914545194!GO:0031529;ruffle organization and biogenesis;0.0193979755907505!GO:0006790;sulfur metabolic process;0.0193979755907505!GO:0006497;protein amino acid lipidation;0.0194103461387289!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0195494488036801!GO:0001953;negative regulation of cell-matrix adhesion;0.0199389625682684!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0203639379719688!GO:0006144;purine base metabolic process;0.0204135749661653!GO:0003756;protein disulfide isomerase activity;0.0205201126047462!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0205201126047462!GO:0051128;regulation of cellular component organization and biogenesis;0.0205609721048167!GO:0005637;nuclear inner membrane;0.0206300736261422!GO:0016251;general RNA polymerase II transcription factor activity;0.0207658619572263!GO:0006289;nucleotide-excision repair;0.022004995732993!GO:0031124;mRNA 3'-end processing;0.0220933043653281!GO:0007264;small GTPase mediated signal transduction;0.0222156525542428!GO:0030521;androgen receptor signaling pathway;0.0224302388713816!GO:0009303;rRNA transcription;0.0227434514846659!GO:0004518;nuclease activity;0.0230435577125017!GO:0006268;DNA unwinding during replication;0.0232642351161307!GO:0045892;negative regulation of transcription, DNA-dependent;0.0234015033153977!GO:0006892;post-Golgi vesicle-mediated transport;0.0234015033153977!GO:0003678;DNA helicase activity;0.0234015033153977!GO:0006007;glucose catabolic process;0.0235576719815615!GO:0016860;intramolecular oxidoreductase activity;0.0235807529273931!GO:0005096;GTPase activator activity;0.0235997582652865!GO:0045045;secretory pathway;0.0237961868309596!GO:0007093;mitotic cell cycle checkpoint;0.0237961868309596!GO:0033673;negative regulation of kinase activity;0.0239297723577494!GO:0006469;negative regulation of protein kinase activity;0.0239297723577494!GO:0000776;kinetochore;0.0242085226583009!GO:0006118;electron transport;0.0244608859710051!GO:0006352;transcription initiation;0.0249516154077943!GO:0006693;prostaglandin metabolic process;0.0250554352124676!GO:0006692;prostanoid metabolic process;0.0250554352124676!GO:0006506;GPI anchor biosynthetic process;0.0250554352124676!GO:0051539;4 iron, 4 sulfur cluster binding;0.0250554352124676!GO:0000096;sulfur amino acid metabolic process;0.0255281411903465!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0261723970620828!GO:0030433;ER-associated protein catabolic process;0.0261723970620828!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0261723970620828!GO:0051348;negative regulation of transferase activity;0.0261723970620828!GO:0046519;sphingoid metabolic process;0.026357316340574!GO:0030833;regulation of actin filament polymerization;0.0264804866631351!GO:0008538;proteasome activator activity;0.0267044462640468!GO:0006779;porphyrin biosynthetic process;0.026793224465422!GO:0033014;tetrapyrrole biosynthetic process;0.026793224465422!GO:0030659;cytoplasmic vesicle membrane;0.0268335094003277!GO:0008022;protein C-terminus binding;0.0282483497847522!GO:0051101;regulation of DNA binding;0.0287945660458665!GO:0031625;ubiquitin protein ligase binding;0.0288272789658442!GO:0042158;lipoprotein biosynthetic process;0.02920801634783!GO:0030508;thiol-disulfide exchange intermediate activity;0.02920801634783!GO:0006739;NADP metabolic process;0.0303478515007198!GO:0006520;amino acid metabolic process;0.0309382437989919!GO:0003682;chromatin binding;0.0311458134234852!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0315906920716682!GO:0006378;mRNA polyadenylation;0.0319465488633142!GO:0000209;protein polyubiquitination;0.0319465488633142!GO:0006417;regulation of translation;0.0321257422289654!GO:0005583;fibrillar collagen;0.0322507737847729!GO:0043065;positive regulation of apoptosis;0.0322767719484268!GO:0006405;RNA export from nucleus;0.0331645571983306!GO:0006505;GPI anchor metabolic process;0.0332060239346978!GO:0006354;RNA elongation;0.0341715453930694!GO:0007021;tubulin folding;0.0346224695141674!GO:0050811;GABA receptor binding;0.034829968504364!GO:0031371;ubiquitin conjugating enzyme complex;0.0351104357404486!GO:0001516;prostaglandin biosynthetic process;0.0351860120553432!GO:0046457;prostanoid biosynthetic process;0.0351860120553432!GO:0030032;lamellipodium biogenesis;0.0358669094941992!GO:0032984;macromolecular complex disassembly;0.036304765883307!GO:0005669;transcription factor TFIID complex;0.036304765883307!GO:0050681;androgen receptor binding;0.0366999343681775!GO:0044437;vacuolar part;0.03685220139486!GO:0005758;mitochondrial intermembrane space;0.0371227537035004!GO:0006611;protein export from nucleus;0.0378700490099599!GO:0006733;oxidoreduction coenzyme metabolic process;0.0380932096784921!GO:0051540;metal cluster binding;0.0385740668913804!GO:0051536;iron-sulfur cluster binding;0.0385740668913804!GO:0043068;positive regulation of programmed cell death;0.0388621745792626!GO:0043433;negative regulation of transcription factor activity;0.0392455974182042!GO:0005765;lysosomal membrane;0.0393960492452055!GO:0045893;positive regulation of transcription, DNA-dependent;0.0394694972867023!GO:0043492;ATPase activity, coupled to movement of substances;0.0408088250338306!GO:0042326;negative regulation of phosphorylation;0.0410282815867823!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0410282815867823!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0410282815867823!GO:0022415;viral reproductive process;0.0410946913007138!GO:0015036;disulfide oxidoreductase activity;0.0412767706158206!GO:0045792;negative regulation of cell size;0.0413185103916308!GO:0035035;histone acetyltransferase binding;0.0413185103916308!GO:0030911;TPR domain binding;0.041929305611005!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0421053206284765!GO:0030125;clathrin vesicle coat;0.0421053206284765!GO:0030665;clathrin coated vesicle membrane;0.0421053206284765!GO:0008283;cell proliferation;0.0422114513053213!GO:0065007;biological regulation;0.0423106846306123!GO:0030308;negative regulation of cell growth;0.043617550044916!GO:0044433;cytoplasmic vesicle part;0.0436411847246738!GO:0019222;regulation of metabolic process;0.0440494916744731!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0441764432136007!GO:0030384;phosphoinositide metabolic process;0.0444243637056415!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0446420232892683!GO:0000792;heterochromatin;0.0446420232892683!GO:0046128;purine ribonucleoside metabolic process;0.0446420232892683!GO:0042278;purine nucleoside metabolic process;0.0446420232892683!GO:0007052;mitotic spindle organization and biogenesis;0.0447201169139529!GO:0006376;mRNA splice site selection;0.0447437352729502!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0447437352729502!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0447437352729502!GO:0010257;NADH dehydrogenase complex assembly;0.0447437352729502!GO:0033108;mitochondrial respiratory chain complex assembly;0.0447437352729502!GO:0009225;nucleotide-sugar metabolic process;0.0447843386659022!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0447843386659022!GO:0004532;exoribonuclease activity;0.0454239377045148!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0454239377045148!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0454750281824501!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0457518875876152!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0459202288786438!GO:0009124;nucleoside monophosphate biosynthetic process;0.0462040908770908!GO:0009123;nucleoside monophosphate metabolic process;0.0462040908770908!GO:0009119;ribonucleoside metabolic process;0.0466191939701758!GO:0008147;structural constituent of bone;0.0470063730548449!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0475068867188855!GO:0045039;protein import into mitochondrial inner membrane;0.0475068867188855!GO:0007030;Golgi organization and biogenesis;0.0479645477166063!GO:0006769;nicotinamide metabolic process;0.0486514103295966!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0488215218323939!GO:0004722;protein serine/threonine phosphatase activity;0.0490624832289824!GO:0006984;ER-nuclear signaling pathway;0.0493887468585835!GO:0043241;protein complex disassembly;0.0496216562862384!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.049926759008682
|sample_id=11428
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=adipose tissue
|top_motifs=TAL1_TCF{3,4,12}:1.81270838572;HES1:1.801530552;ALX4:1.67931533701;ESR1:1.59696813253;UFEwm:1.544192459;EN1,2:1.42978649941;HOX{A5,B5}:1.41657519574;GLI1..3:1.27537689218;ZNF238:1.24194024246;PAX1,9:1.18753758479;IKZF1:1.11928373781;TFCP2:1.11116430197;NKX2-2,8:1.07628649483;NFE2L1:0.991136111696;KLF4:0.99016722673;GZF1:0.965063529502;MAFB:0.93265844554;NANOG{mouse}:0.907094305731;SPZ1:0.844995930082;TP53:0.841207961407;HSF1,2:0.835934569441;TFAP4:0.833953683014;GFI1B:0.818616304684;RXR{A,B,G}:0.814920105186;GCM1,2:0.789959920771;EBF1:0.753936892444;ZNF423:0.728198358877;SRF:0.704118257087;ATF6:0.695401754984;TLX1..3_NFIC{dimer}:0.686918135695;ZBTB6:0.677973309902;TEAD1:0.6637979306;LHX3,4:0.643758078678;RXRA_VDR{dimer}:0.630203259128;XBP1:0.627183016386;HOX{A4,D4}:0.617072830766;ZIC1..3:0.576934496814;NR3C1:0.551447065734;NR6A1:0.539883718657;HOX{A6,A7,B6,B7}:0.519231467796;NFE2L2:0.504824596958;HAND1,2:0.499844246628;MYBL2:0.498758922241;GTF2I:0.495536559061;GATA4:0.48351050519;TBP:0.483144945492;SOX17:0.475126002291;NKX3-1:0.467379479611;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.467078687994;TFAP2B:0.462593405182;FOXL1:0.449917602078;MTE{core}:0.444417626501;NKX3-2:0.429107041436;AR:0.414960202033;TFDP1:0.401074304195;YY1:0.400038239449;EVI1:0.394884599494;NFATC1..3:0.381969274725;XCPE1{core}:0.363357766728;HIC1:0.334494774913;PRDM1:0.331216939491;ESRRA:0.325089987154;EGR1..3:0.303278231064;GTF2A1,2:0.250018047176;SMAD1..7,9:0.247940248403;TEF:0.245863544737;PAX8:0.242688041909;BACH2:0.238746811464;TOPORS:0.233817684086;ZNF148:0.220053532227;NFIX:0.219249291571;TFAP2{A,C}:0.20912826178;ZNF384:0.207800476467;POU3F1..4:0.204803556669;DBP:0.164894948105;FOS_FOS{B,L1}_JUN{B,D}:0.125430128151;HLF:0.125268862521;PATZ1:0.117111883987;NHLH1,2:0.115973068194;HMX1:0.114448173162;RREB1:0.114087941471;HMGA1,2:0.110576274177;REST:0.0888299212703;CDC5L:0.0873554399973;E2F1..5:0.0795931541512;HBP1_HMGB_SSRP1_UBTF:0.0689888034197;MYFfamily:0.0669250122014;HNF1A:0.0642362341151;NR5A1,2:0.0392935719605;TBX4,5:0.0152464716835;ALX1:0.00202463400479;MZF1:-0.00240001147681;FOXM1:-0.00677470420968;FOX{I1,J2}:-0.00763772478341;PPARG:-0.0684096399794;ELK1,4_GABP{A,B1}:-0.0685499236523;HIF1A:-0.069636394828;MYB:-0.0859030695795;RUNX1..3:-0.089727576404;GFI1:-0.129646986755;PAX5:-0.166575940286;MAZ:-0.181078293633;LEF1_TCF7_TCF7L1,2:-0.215722606629;ZNF143:-0.223299093485;NR1H4:-0.229724913823;bHLH_family:-0.235956404825;MTF1:-0.236219652146;FOSL2:-0.24196935962;ARID5B:-0.24291552411;IRF1,2:-0.248510794835;NFIL3:-0.287423015928;PBX1:-0.295103031272;NFKB1_REL_RELA:-0.307071211656;STAT2,4,6:-0.308912997935;ZFP161:-0.339507109134;JUN:-0.3425123162;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.34921816685;NFE2:-0.370117255859;MEF2{A,B,C,D}:-0.371192560791;RFX1:-0.376377824377;HNF4A_NR2F1,2:-0.382142282924;NKX6-1,2:-0.399106558709;DMAP1_NCOR{1,2}_SMARC:-0.427947407059;STAT1,3:-0.436517040555;POU6F1:-0.442222503861;AIRE:-0.443104426162;MED-1{core}:-0.447387013467;NKX2-3_NKX2-5:-0.45542453215;PRRX1,2:-0.457459024289;OCT4_SOX2{dimer}:-0.466665403188;CREB1:-0.468087008642;SPI1:-0.46918619432;FOXD3:-0.481765342969;NRF1:-0.484962816202;CEBPA,B_DDIT3:-0.487641981665;AHR_ARNT_ARNT2:-0.505496120558;PAX2:-0.512608273753;FOXO1,3,4:-0.525032624765;ELF1,2,4:-0.53290960729;SPIB:-0.536739312687;ONECUT1,2:-0.537885157213;SOX{8,9,10}:-0.573425650688;SP1:-0.57611901786;PAX4:-0.582542211831;PAX3,7:-0.587998149577;ETS1,2:-0.625068178253;POU2F1..3:-0.652814182012;TLX2:-0.655622588579;IRF7:-0.659300524029;NFY{A,B,C}:-0.672519832429;POU5F1:-0.673364668508;GATA6:-0.687783321417;SOX2:-0.689491500126;NKX2-1,4:-0.698580146297;SOX5:-0.701818023758;FOXA2:-0.717176389418;LMO2:-0.719568263325;STAT5{A,B}:-0.72090377633;ZEB1:-0.729507126075;ZBTB16:-0.751343838842;TGIF1:-0.767292054533;BREu{core}:-0.798111611802;PAX6:-0.800594322782;CRX:-0.871506360602;SNAI1..3:-0.877989488513;FOXP3:-0.892212943074;BPTF:-0.894409409575;FOX{D1,D2}:-0.908757897193;HOXA9_MEIS1:-0.923374142008;EP300:-0.928751130698;ATF5_CREB3:-0.949397719622;ATF2:-0.959818139231;FOXQ1:-0.963589766688;NANOG:-1.06904505001;ADNP_IRX_SIX_ZHX:-1.07750590905;FOXN1:-1.09478958259;MYOD1:-1.10305259898;SREBF1,2:-1.10672781821;CUX2:-1.11022320723;ATF4:-1.14543965725;T:-1.16650273194;PITX1..3:-1.16763278734;IKZF2:-1.21265804116;RORA:-1.22615773724;RFX2..5_RFXANK_RFXAP:-1.23105808573;FOXP1:-1.26221575959;POU1F1:-1.27125904383;CDX1,2,4:-1.27355932519;VSX1,2:-1.2906964138;PDX1:-1.49729534302;RBPJ:-1.68638537627;FOX{F1,F2,J1}:-1.79179816953
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11428-118G6;search_select_hide=table117:FF:11428-118G6
}}
}}

Latest revision as of 18:00, 4 June 2020

Name:Preadipocyte - subcutaneous, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12038
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueadipose tissue
dev stage60 years old adult
sexfemale
age60
cell typepreadipocyte
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1634
catalog numberCA802s-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005562
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12038 CAGE DRX008415 DRR009287
Accession ID Hg19

Library idBAMCTSS
CNhs12038 DRZ000712 DRZ002097
Accession ID Hg38

Library idBAMCTSS
CNhs12038 DRZ012062 DRZ013447
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005562
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10012.ACTTGA sRNA-Seq DRX037188 DRR041554
Accession ID Hg19

Library idBAMCTSS
SRhi10012.ACTTGA DRZ007196


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0355
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.117
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.47
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.00371
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.263
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.144
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.071
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.071
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.833
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0194
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.124
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.132
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.132
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.071
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.00358
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.153
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.071
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.071
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.52
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.384
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.641
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.623
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.691
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0335
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.847
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12038

Jaspar motifP-value
MA0002.20.945
MA0003.10.222
MA0004.10.487
MA0006.10.188
MA0007.10.265
MA0009.10.235
MA0014.10.53
MA0017.10.941
MA0018.21.01258e-5
MA0019.10.486
MA0024.10.15
MA0025.10.0698
MA0027.10.855
MA0028.10.138
MA0029.10.326
MA0030.10.00518
MA0031.10.00464
MA0035.20.105
MA0038.10.00724
MA0039.20.0378
MA0040.10.621
MA0041.10.584
MA0042.10.946
MA0043.15.48076e-6
MA0046.10.715
MA0047.20.402
MA0048.10.177
MA0050.10.0234
MA0051.10.201
MA0052.10.306
MA0055.10.614
MA0057.10.0915
MA0058.10.301
MA0059.10.224
MA0060.12.43179e-5
MA0061.10.727
MA0062.29.91757e-5
MA0065.20.877
MA0066.10.403
MA0067.10.00564
MA0068.10.377
MA0069.10.218
MA0070.10.222
MA0071.10.515
MA0072.10.589
MA0073.10.886
MA0074.10.118
MA0076.10.0408
MA0077.10.325
MA0078.10.702
MA0079.20.716
MA0080.21.20166e-6
MA0081.10.0413
MA0083.10.0045
MA0084.10.752
MA0087.10.593
MA0088.10.523
MA0090.10.0261
MA0091.10.0153
MA0092.10.176
MA0093.10.546
MA0099.20.363
MA0100.10.4
MA0101.10.0356
MA0102.20.0576
MA0103.10.0311
MA0104.20.425
MA0105.10.784
MA0106.10.0106
MA0107.10.0911
MA0108.20.0106
MA0111.10.624
MA0112.20.0084
MA0113.10.565
MA0114.10.474
MA0115.10.644
MA0116.10.232
MA0117.10.459
MA0119.10.405
MA0122.10.344
MA0124.10.334
MA0125.10.0824
MA0131.10.212
MA0135.10.796
MA0136.16.04657e-8
MA0137.20.372
MA0138.20.179
MA0139.10.795
MA0140.10.138
MA0141.10.223
MA0142.10.613
MA0143.10.851
MA0144.10.951
MA0145.10.277
MA0146.10.344
MA0147.11
MA0148.10.485
MA0149.10.624
MA0150.10.378
MA0152.10.0344
MA0153.10.818
MA0154.10.445
MA0155.10.342
MA0156.11.37882e-5
MA0157.10.0298
MA0159.10.888
MA0160.10.723
MA0162.10.294
MA0163.10.0015
MA0164.10.711
MA0258.10.35
MA0259.10.698



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12038

Novel motifP-value
10.663
100.777
1000.858
1010.498
1020.601
1030.187
1040.71
1050.184
1060.0579
1070.0302
1080.179
1090.14
110.43
1100.253
1110.622
1120.186
1130.00529
1140.326
1150.0342
1160.0551
1170.635
1180.661
1190.747
120.477
1200.146
1210.726
1220.062
1230.00413
1240.54
1250.292
1260.53
1270.625
1280.0905
1290.592
130.984
1300.56
1310.806
1320.486
1330.197
1340.357
1350.877
1360.937
1370.658
1380.471
1390.7
140.141
1400.707
1410.954
1420.685
1430.0665
1440.988
1450.97
1460.931
1470.159
1480.577
1490.0506
150.83
1500.0662
1510.496
1520.00701
1530.885
1540.449
1550.158
1560.396
1570.6
1580.0134
1590.309
160.0138
1600.306
1610.513
1620.173
1630.681
1640.206
1650.748
1660.629
1670.673
1680.985
1690.0167
170.209
180.151
190.0159
20.161
200.243
210.047
220.147
230.546
240.789
250.313
260.18
270.181
280.117
290.358
30.501
300.255
310.732
324.45017e-11
330.936
340.557
350.645
360.0377
370.0918
380.906
390.134
40.911
400.336
410.676
420.753
430.579
440.0763
450.799
460.211
470.876
480.523
490.815
50.862
500.496
510.441
520.76
530.211
540.674
550.454
560.996
570.79
580.482
590.0454
60.692
600.716
610.816
620.748
630.424
640.71
650.205
660.605
670.516
680.458
690.246
70.337
700.442
710.136
720.923
730.0123
740.0778
750.241
760.63
770.0169
780.508
790.0115
80.0644
800.579
810.807
820.528
830.533
840.459
850.351
860.585
870.017
880.571
890.0433
90.138
900.342
910.463
920.361
930.677
940.642
950.0168
960.963
970.635
980.362
990.00205



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12038


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002583 (subcutaneous preadipocyte)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002072 (hypodermis)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000142 (human subcutaneous preadipocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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