FF:11425-118G3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004715 | ||
|ancestors_in_cell_lineage_facet=CL:0000000 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004715 | ||
|accession_numbers=CAGE;DRX008391;DRR009263;DRZ000688;DRZ002073;DRZ012038;DRZ013423 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037252;DRR041618;DRZ007260 | |||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000062 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000127,FF:0000128 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor3.CNhs12035.11425-118G3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor3.CNhs12035.11425-118G3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor3.CNhs12035.11425-118G3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor3.CNhs12035.11425-118G3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor3.CNhs12035.11425-118G3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11425-118G3 | |id=FF:11425-118G3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000127;;FF:0000128 | ||
|is_obsolete= | |||
|library_id=CNhs12035 | |||
|library_id_phase_based=2:CNhs12035 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11425 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.CAGATC.11425 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11425 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.CAGATC.11425 | |||
|name=Osteoblast - differentiated, donor3 | |name=Osteoblast - differentiated, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12035,LSID837,release011,COMPLETED | |profile_hcage=CNhs12035,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10015,,, | |profile_srnaseq=SRhi10015,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.500758446003629,0.887710155900168,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704514920393266,0,0,0,0,0,1.49626926337286,0,0,0.175550350745894,0,0,0,0,0,0,0,0,0,0,0,0,0.825826355786439,0.613227684183812,0,0,0,0,0,0,0,0.130038449149544,0,0,0,0,0,0.0974300094757963,0,0.81909899699981,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.710872097869569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10877043775102,0,0,0,0.038018049505715,0.272526170125885,0,0,0,0,0.21047158928705,0.539816259265855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.456456164993993,0.655828099488945,0,0,0.230897562354838,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.308506940524756,0.21047158928705,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0.115964727366257,-0.165579278227252,0.164991798001284,0,0,0.0335882254447133,0,0,0,0,0,0,0,0.308506940524756,0,0.180387073572191,0,0.258094388935441,0,0,0,0,0,0.00303470962634889,0,-0.17425806114951,-0.0683442610773682,0,0,0,0,-0.115987199071946,0,-0.120879483793741,-0.0827201683234173,0.0868953524219494,-0.290965147056609,-0.033690175799978,0,0,0.154253470262378,0.239431552810795,-0.160540982651195,0,0,0.184833990340032,0.127157321964097,0,0,0.70174754542479,0,0.575350305108246,0.292646911897104,0,0,0,0,0,0,0,0,0,0,0,0,0,0.707166054391677,-0.0184816561542127,0,0,0,0,-0.14544696085554,0,0.0312155368387171,0.896003095148645,0.281928912204363,0,0.203452747430588,0,-0.302389727009913,0.173264649656665,-0.352222990124404,0.038018049505715,0.64314040596721,0.297080460389727,0.179562104865641,0.10877043775102,-0.1730449449302,0,0.320601401062628,-0.0352469106143134,0.362818651353815,0.187819341475559,0,0,0.313649314090474,0.248223392460238,0,-0.238162023937561,-0.181607773952017,-0.099764755273702,0.114374929974149,0.218782958492775,0.154863719466486,-0.216712593363712,0.114720941805707,0.400401477845098,0.0106366624578662,0.400857111634995,0,0,0,-0.0425518113125783,0.341735820970066,-0.00259848899486759,0,0.483469683832528,0.240162679447388,0,0.17450330956398,0.0469241591774765,0,0.0672672882426975,0.132094866998157,0,0,0.0777259060727374,0,0.487062179939574,-0.320751467843018,0.171379954839403,-0.232855561555545,0,-0.062752733562276,-0.0980661327263745,-0.0537549903827995,0,-0.0534024180597771,0.158788900711027,0,0.0158731359285202,0,0.0890002795132518,-0.0834341847643018,0.150400443137678,0.545052340251771,0.554780857371986,-0.243409753836157,0.0821616035880232,0.363490873390466,0.00160239054812239,-0.000513148999561341,0.398935347464286,0,0.385744500586832,-0.679498131621524,0.135781915095515,0.118355065531509,0,0.039086362143202,0,-0.147790833750479,0,-0.0894238753285217,0.649511953067871,0.351252880757663,-0.0232273192059038,0,-0.231361993908245,0.54822099477866,0,0.0361225673527758,0,0,0.158139857190117,0.0131761313569865,-0.057396957602211,-0.138989456679195,0,0.22328702130801,0,0,0.138787197258025,-0.235476037764389,0,0.172272329585039,0.00402476997041534,0.00901164298851698,-0.115971073434934,0.613227684183812,0,0.367666841704942,0,0.308506940524756,0.251909866923663,0.174371032697896,-0.311276383433877,0.0551805990380005,0.0911895311945885,0.401066709742907,0,0,-0.177527765965176,0.308506940524756,0.274234670188482,0,0,0.349085842305748,0.191878827534623,0,0,0.710872097869569,0,0,0,0,0,0,0,0,-0.218438677730241,-0.354833330216448,0,0.0663785899252431,0,0,0,0,0,-0.110803081130275,0,0.308506940524756,0.129780758023157,0.0450376249536424,-0.12301741567642,0,0,0,0,-0.215723402553475,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,0.858360901188751,0.67538479713435,0,0,0,1.07963251853171,0,0,0,0.0185050543374103,0.144029683271643,0,0,0,0,0.232582844718267,-0.0815818795468414,0,0.053279112915572,0.44242152519829,0.0848104374539056,0,0,-0.261347131789888,0,0,-0.119852963390833,0,0,0,0,0,0,0,0,0,0.0941924281250006,0,0,0,0,0,0,0,0,0,0,0,0.327184804689021,0.216282883866246,0,0,0,0,0,0,0,-0.0241060230789031,-0.217304230648891,0.100689371422161,0,0,0,0,0.710872097869569,0,0,-0.162918999138486,0,0,0.308506940524756,0,0,0.81909899699981,0,0,0,0,1.46691337127558,0,0,0.433509965676055,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.500758446003629,0,0,0,0,0,0,0,1.23088525237336,0,0.308506940524756,0,0,0.194622566815779,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154253470262378,0,0,0,0.640714050528339,0.155045489669222,0.13674300021014,0.121581578565432,0,0,0.0109027373367453,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,1.49626926337286,0,0,0.0622206604618518,0,0,0,0,0,0,0.0205300998680465,0.0233934422687585,0.1166649062377,0,0,0,0.252228269609451,0,0,0.0918750885129741,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704514920393266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120242106986962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154253470262378,0,0,0,0,0.974874341483848,0,0,0,0.0954207108677125,0,0,0,0,0,0,0.308506940524756,0,0.308506940524756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.613227684183812,0,0,0,0.722219061126994,0,0,0,0,0,0,0,0,0,0,0,0,0,0.662650022630515,0,-0.0843766322300271,0,0,0,0,0,1.37592092685747,0,0,0,0,0,0.308506940524756,0,0,0,0,1.25647980907975,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0.613227684183812,0,0,0,0,0,0,0,0,0,0,0.906302296939279,0,0,0.940221433957685,0,0,0.111480330683497,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,0.260076898299088,0,0,0,0,0,0,0,0,1.62725551249042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.446593685011022,0.655828099488945,0,0,0,0,0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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA406D-R10f | |rna_catalog_number=CA406D-R10f | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118G3 | |rna_tube_id=118G3 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10015.CAGATC | |||
|sample_age=embryo 18 week | |sample_age=embryo 18 week | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.07784187321589e-207!GO:0005737;cytoplasm;2.04174517450248e-195!GO:0043226;organelle;6.21329490805415e-153!GO:0043229;intracellular organelle;1.06863527290057e-152!GO:0043231;intracellular membrane-bound organelle;1.31691711202194e-147!GO:0043227;membrane-bound organelle;2.78364559489019e-147!GO:0044444;cytoplasmic part;2.37330114384467e-146!GO:0044422;organelle part;5.79075809384221e-114!GO:0044446;intracellular organelle part;1.16357085795024e-112!GO:0005515;protein binding;1.28677604459666e-77!GO:0032991;macromolecular complex;4.56459504532805e-74!GO:0030529;ribonucleoprotein complex;2.13198188708558e-72!GO:0044237;cellular metabolic process;1.24474282236524e-69!GO:0044238;primary metabolic process;9.24888360280742e-69!GO:0005739;mitochondrion;4.50441166780196e-67!GO:0043170;macromolecule metabolic process;3.21667986216344e-59!GO:0043233;organelle lumen;9.22459370875993e-54!GO:0031974;membrane-enclosed lumen;9.22459370875993e-54!GO:0005840;ribosome;3.61740676904585e-52!GO:0031090;organelle membrane;3.69961036366931e-52!GO:0009058;biosynthetic process;5.80485087269912e-48!GO:0019538;protein metabolic process;5.8289154318374e-48!GO:0006412;translation;1.08995300660347e-47!GO:0003723;RNA binding;8.49809289883815e-47!GO:0003735;structural constituent of ribosome;1.77106532509154e-46!GO:0044428;nuclear part;2.10944251832211e-44!GO:0044260;cellular macromolecule metabolic process;6.4401322708595e-44!GO:0044249;cellular biosynthetic process;7.22325109897764e-43!GO:0044429;mitochondrial part;9.98575092532247e-43!GO:0044267;cellular protein metabolic process;3.658347212469e-42!GO:0033279;ribosomal subunit;8.93921795941518e-42!GO:0009059;macromolecule biosynthetic process;4.78887100304297e-41!GO:0016043;cellular component organization and biogenesis;1.06416223205399e-40!GO:0005634;nucleus;5.46573070246462e-39!GO:0005829;cytosol;3.8619331641098e-38!GO:0043234;protein complex;8.08940416966652e-36!GO:0015031;protein transport;3.04704757669606e-35!GO:0031967;organelle envelope;3.71672997900202e-35!GO:0031975;envelope;5.6866292708137e-35!GO:0033036;macromolecule localization;6.11713388218968e-34!GO:0045184;establishment of protein localization;3.45190176241423e-33!GO:0008104;protein localization;1.39012456329377e-32!GO:0006396;RNA processing;2.57792861595529e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.71954668684606e-31!GO:0005740;mitochondrial envelope;4.74188657218659e-29!GO:0031966;mitochondrial membrane;1.56674161194835e-27!GO:0046907;intracellular transport;3.63745683397528e-27!GO:0031981;nuclear lumen;4.04586487905397e-27!GO:0065003;macromolecular complex assembly;4.56869003754858e-26!GO:0019866;organelle inner membrane;6.26497671097461e-26!GO:0043283;biopolymer metabolic process;1.22752187297789e-25!GO:0016071;mRNA metabolic process;1.75985700420592e-25!GO:0010467;gene expression;3.24722734770887e-25!GO:0005743;mitochondrial inner membrane;8.52533650520284e-25!GO:0022607;cellular component assembly;1.64437713804656e-24!GO:0005783;endoplasmic reticulum;5.56164122521623e-24!GO:0006886;intracellular protein transport;6.14675009533504e-24!GO:0008380;RNA splicing;1.79342041567136e-23!GO:0006996;organelle organization and biogenesis;1.30796263045229e-22!GO:0044445;cytosolic part;1.95670494851196e-22!GO:0043228;non-membrane-bound organelle;2.89741407981393e-22!GO:0043232;intracellular non-membrane-bound organelle;2.89741407981393e-22!GO:0015934;large ribosomal subunit;1.36595769849679e-21!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.6831712757802e-21!GO:0006119;oxidative phosphorylation;2.01109540665694e-21!GO:0015935;small ribosomal subunit;2.76604463528303e-21!GO:0006397;mRNA processing;4.71993756731535e-21!GO:0044455;mitochondrial membrane part;1.06231268458972e-20!GO:0048770;pigment granule;1.15014856946116e-20!GO:0042470;melanosome;1.15014856946116e-20!GO:0012505;endomembrane system;1.29777189999121e-20!GO:0006457;protein folding;4.9121351729254e-20!GO:0044432;endoplasmic reticulum part;4.27930387275195e-19!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.99130383118054e-18!GO:0051186;cofactor metabolic process;4.78411560925239e-18!GO:0031980;mitochondrial lumen;3.33948989804926e-17!GO:0005759;mitochondrial matrix;3.33948989804926e-17!GO:0005746;mitochondrial respiratory chain;4.06488888942869e-17!GO:0008134;transcription factor binding;5.13861594542379e-17!GO:0051641;cellular localization;5.88357789436445e-17!GO:0051649;establishment of cellular localization;6.88183244220212e-17!GO:0005654;nucleoplasm;3.41108047916176e-16!GO:0005794;Golgi apparatus;5.48175342074327e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.79316965183018e-16!GO:0005681;spliceosome;1.00284679037618e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.69973633967329e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.01055889745403e-15!GO:0043285;biopolymer catabolic process;7.70221136813994e-15!GO:0005761;mitochondrial ribosome;1.76339473089819e-14!GO:0000313;organellar ribosome;1.76339473089819e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.01475258045513e-14!GO:0003954;NADH dehydrogenase activity;2.01475258045513e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.01475258045513e-14!GO:0022618;protein-RNA complex assembly;2.19869955120054e-14!GO:0016874;ligase activity;2.91455120790639e-14!GO:0006732;coenzyme metabolic process;3.85822334505212e-14!GO:0044265;cellular macromolecule catabolic process;4.65243486688522e-14!GO:0044451;nucleoplasm part;7.2559725661321e-14!GO:0006512;ubiquitin cycle;1.19528448935273e-13!GO:0009057;macromolecule catabolic process;1.63842480095671e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.64511714212051e-13!GO:0006605;protein targeting;2.97097294591016e-13!GO:0051082;unfolded protein binding;3.12432849591465e-13!GO:0008135;translation factor activity, nucleic acid binding;3.80713955649418e-13!GO:0030163;protein catabolic process;3.92437691965701e-13!GO:0012501;programmed cell death;5.2702211745642e-13!GO:0044248;cellular catabolic process;5.70093158677473e-13!GO:0000502;proteasome complex (sensu Eukaryota);6.95435741076899e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.09557041819068e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;8.19774313075403e-13!GO:0048523;negative regulation of cellular process;8.2822298318313e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.27066032403716e-12!GO:0045271;respiratory chain complex I;1.27066032403716e-12!GO:0005747;mitochondrial respiratory chain complex I;1.27066032403716e-12!GO:0019941;modification-dependent protein catabolic process;1.38416697250545e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.38416697250545e-12!GO:0005789;endoplasmic reticulum membrane;1.47569454634446e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.49923976872821e-12!GO:0042773;ATP synthesis coupled electron transport;1.49923976872821e-12!GO:0006915;apoptosis;1.5633153718481e-12!GO:0044257;cellular protein catabolic process;1.60389109789714e-12!GO:0006511;ubiquitin-dependent protein catabolic process;2.36446418821975e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.16380927819268e-12!GO:0005793;ER-Golgi intermediate compartment;4.48774179028958e-12!GO:0005730;nucleolus;4.63492364511432e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.2510544088972e-11!GO:0016192;vesicle-mediated transport;1.47839934454372e-11!GO:0016462;pyrophosphatase activity;1.52649403745245e-11!GO:0016817;hydrolase activity, acting on acid anhydrides;1.59068516888315e-11!GO:0008219;cell death;1.67513940257535e-11!GO:0016265;death;1.67513940257535e-11!GO:0048193;Golgi vesicle transport;1.88371417887695e-11!GO:0048519;negative regulation of biological process;3.35435728116453e-11!GO:0009055;electron carrier activity;3.41314097385583e-11!GO:0006259;DNA metabolic process;3.47587459672773e-11!GO:0003712;transcription cofactor activity;6.57953607406522e-11!GO:0017111;nucleoside-triphosphatase activity;7.59564022445296e-11!GO:0043412;biopolymer modification;1.40860396590093e-10!GO:0003743;translation initiation factor activity;2.44234127739903e-10!GO:0006464;protein modification process;7.0769036580355e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.94082200679746e-10!GO:0051188;cofactor biosynthetic process;1.18849791669222e-09!GO:0007049;cell cycle;1.24820160933512e-09!GO:0005788;endoplasmic reticulum lumen;1.3813247191739e-09!GO:0006413;translational initiation;1.77139094579703e-09!GO:0000166;nucleotide binding;1.77750722229325e-09!GO:0006366;transcription from RNA polymerase II promoter;2.19169857143881e-09!GO:0009056;catabolic process;3.42258953711508e-09!GO:0006446;regulation of translational initiation;4.66043324823406e-09!GO:0016491;oxidoreductase activity;4.90146416346046e-09!GO:0009259;ribonucleotide metabolic process;6.53661221615508e-09!GO:0006163;purine nucleotide metabolic process;6.83421218128499e-09!GO:0009150;purine ribonucleotide metabolic process;7.07830845452e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;7.52417829106799e-09!GO:0000375;RNA splicing, via transesterification reactions;7.52417829106799e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.52417829106799e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.12045577867649e-09!GO:0008639;small protein conjugating enzyme activity;9.63672005030893e-09!GO:0016023;cytoplasmic membrane-bound vesicle;1.11775328275565e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.11775328275565e-08!GO:0009141;nucleoside triphosphate metabolic process;1.30397634022013e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.46763753372107e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.46763753372107e-08!GO:0031988;membrane-bound vesicle;1.54519718643381e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.79624352779665e-08!GO:0004842;ubiquitin-protein ligase activity;2.24349975243682e-08!GO:0008565;protein transporter activity;2.35238696185604e-08!GO:0043067;regulation of programmed cell death;2.35238696185604e-08!GO:0017038;protein import;2.42691928816308e-08!GO:0042981;regulation of apoptosis;2.60652612927032e-08!GO:0006461;protein complex assembly;3.4661580240554e-08!GO:0005773;vacuole;3.63901024500083e-08!GO:0015986;ATP synthesis coupled proton transport;3.74210226917099e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.74210226917099e-08!GO:0042254;ribosome biogenesis and assembly;3.95313068182184e-08!GO:0016564;transcription repressor activity;4.01750372886344e-08!GO:0006164;purine nucleotide biosynthetic process;4.13629200573256e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.19451570307081e-08!GO:0019787;small conjugating protein ligase activity;5.24027425888539e-08!GO:0003676;nucleic acid binding;5.82303242495607e-08!GO:0019829;cation-transporting ATPase activity;6.39777292702243e-08!GO:0043687;post-translational protein modification;6.58794049928733e-08!GO:0005635;nuclear envelope;6.78454867442091e-08!GO:0046034;ATP metabolic process;7.10077162498064e-08!GO:0000074;regulation of progression through cell cycle;7.34882337802909e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.49277507728565e-08!GO:0051726;regulation of cell cycle;7.80828182329506e-08!GO:0005768;endosome;8.19278043617189e-08!GO:0009260;ribonucleotide biosynthetic process;8.21118261170162e-08!GO:0016469;proton-transporting two-sector ATPase complex;9.06041996636214e-08!GO:0051246;regulation of protein metabolic process;1.01088821233923e-07!GO:0016070;RNA metabolic process;1.02083128530853e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.03246187397677e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.03246187397677e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.04073128776583e-07!GO:0006913;nucleocytoplasmic transport;1.28841724938848e-07!GO:0007005;mitochondrion organization and biogenesis;1.3545390722976e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.35817596356633e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.35817596356633e-07!GO:0044431;Golgi apparatus part;1.42054838601057e-07!GO:0009108;coenzyme biosynthetic process;1.427041128384e-07!GO:0009060;aerobic respiration;1.48117575804181e-07!GO:0022402;cell cycle process;1.57953213001481e-07!GO:0008361;regulation of cell size;1.96174143722396e-07!GO:0051169;nuclear transport;2.12876180557663e-07!GO:0045786;negative regulation of progression through cell cycle;2.13297674530823e-07!GO:0031965;nuclear membrane;2.32690803599706e-07!GO:0031410;cytoplasmic vesicle;2.44421523106175e-07!GO:0016049;cell growth;2.46186476734232e-07!GO:0031982;vesicle;2.54915135587766e-07!GO:0045333;cellular respiration;2.66000382126205e-07!GO:0031324;negative regulation of cellular metabolic process;2.87506964924496e-07!GO:0003714;transcription corepressor activity;4.22420240803162e-07!GO:0016881;acid-amino acid ligase activity;5.42588157640471e-07!GO:0006399;tRNA metabolic process;5.48378052933638e-07!GO:0006754;ATP biosynthetic process;5.97369699433502e-07!GO:0006753;nucleoside phosphate metabolic process;5.97369699433502e-07!GO:0000323;lytic vacuole;6.41222841997406e-07!GO:0005764;lysosome;6.41222841997406e-07!GO:0006888;ER to Golgi vesicle-mediated transport;6.75335180838102e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;7.05916335825146e-07!GO:0043069;negative regulation of programmed cell death;9.26161859312198e-07!GO:0009117;nucleotide metabolic process;9.48244601417283e-07!GO:0001558;regulation of cell growth;1.00097452025028e-06!GO:0032553;ribonucleotide binding;1.09184181858936e-06!GO:0032555;purine ribonucleotide binding;1.09184181858936e-06!GO:0016604;nuclear body;1.34847225136915e-06!GO:0009892;negative regulation of metabolic process;1.53743491809533e-06!GO:0030120;vesicle coat;1.53743491809533e-06!GO:0030662;coated vesicle membrane;1.53743491809533e-06!GO:0006091;generation of precursor metabolites and energy;1.60654453530757e-06!GO:0017076;purine nucleotide binding;1.60654453530757e-06!GO:0043066;negative regulation of apoptosis;1.62262310843842e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.7858084796085e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.10251307689686e-06!GO:0006916;anti-apoptosis;2.26627877496386e-06!GO:0006323;DNA packaging;2.59025256330238e-06!GO:0048475;coated membrane;2.67857691130946e-06!GO:0030117;membrane coat;2.67857691130946e-06!GO:0045259;proton-transporting ATP synthase complex;2.69759498308368e-06!GO:0065004;protein-DNA complex assembly;3.08244883922965e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.94143850011058e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.30985569706024e-06!GO:0004812;aminoacyl-tRNA ligase activity;4.30985569706024e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.30985569706024e-06!GO:0006099;tricarboxylic acid cycle;4.30985569706024e-06!GO:0046356;acetyl-CoA catabolic process;4.30985569706024e-06!GO:0006752;group transfer coenzyme metabolic process;4.32195736235621e-06!GO:0005839;proteasome core complex (sensu Eukaryota);4.94958017353416e-06!GO:0044453;nuclear membrane part;5.67833567344253e-06!GO:0016563;transcription activator activity;5.67833567344253e-06!GO:0050794;regulation of cellular process;5.97672220565159e-06!GO:0005770;late endosome;6.00244545746509e-06!GO:0048522;positive regulation of cellular process;6.19645211634632e-06!GO:0008654;phospholipid biosynthetic process;6.21663724538125e-06!GO:0051187;cofactor catabolic process;6.69080112277829e-06!GO:0005762;mitochondrial large ribosomal subunit;7.07124521523025e-06!GO:0000315;organellar large ribosomal subunit;7.07124521523025e-06!GO:0031252;leading edge;7.18620744523032e-06!GO:0009109;coenzyme catabolic process;7.61317313906391e-06!GO:0019843;rRNA binding;8.223013194647e-06!GO:0065002;intracellular protein transport across a membrane;8.39423600420817e-06!GO:0043038;amino acid activation;8.62298254155544e-06!GO:0006418;tRNA aminoacylation for protein translation;8.62298254155544e-06!GO:0043039;tRNA aminoacylation;8.62298254155544e-06!GO:0045454;cell redox homeostasis;8.82414741785121e-06!GO:0015980;energy derivation by oxidation of organic compounds;8.95844039768694e-06!GO:0006084;acetyl-CoA metabolic process;9.7846081960426e-06!GO:0044262;cellular carbohydrate metabolic process;1.04176268931936e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.10780228879085e-05!GO:0000139;Golgi membrane;1.27226345180918e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.31988032588152e-05!GO:0006974;response to DNA damage stimulus;1.38747004273845e-05!GO:0044440;endosomal part;1.47545035134213e-05!GO:0010008;endosome membrane;1.47545035134213e-05!GO:0003924;GTPase activity;1.47616252664134e-05!GO:0040008;regulation of growth;2.05845750425127e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.0630109264667e-05!GO:0006333;chromatin assembly or disassembly;2.21623047379316e-05!GO:0042623;ATPase activity, coupled;2.51312177810963e-05!GO:0051789;response to protein stimulus;2.51312177810963e-05!GO:0006986;response to unfolded protein;2.51312177810963e-05!GO:0006364;rRNA processing;2.70123928033832e-05!GO:0016072;rRNA metabolic process;3.51680141319706e-05!GO:0005524;ATP binding;3.7158490321315e-05!GO:0006606;protein import into nucleus;4.02076142181002e-05!GO:0016887;ATPase activity;4.02819871007323e-05!GO:0032559;adenyl ribonucleotide binding;4.1305286074489e-05!GO:0009719;response to endogenous stimulus;4.19236398253715e-05!GO:0016607;nuclear speck;4.19236398253715e-05!GO:0051170;nuclear import;4.30973439569594e-05!GO:0004298;threonine endopeptidase activity;4.37579511202738e-05!GO:0005905;coated pit;4.520130969203e-05!GO:0032446;protein modification by small protein conjugation;4.72331345516464e-05!GO:0016567;protein ubiquitination;4.7708933622395e-05!GO:0000278;mitotic cell cycle;4.97543306317977e-05!GO:0016853;isomerase activity;5.33390976913102e-05!GO:0006334;nucleosome assembly;5.36616233308969e-05!GO:0016481;negative regulation of transcription;6.19269277062497e-05!GO:0051276;chromosome organization and biogenesis;6.3743110190791e-05!GO:0005798;Golgi-associated vesicle;6.48850616010915e-05!GO:0006613;cotranslational protein targeting to membrane;6.99242941143048e-05!GO:0030554;adenyl nucleotide binding;7.0851778476577e-05!GO:0003697;single-stranded DNA binding;7.25316830521252e-05!GO:0000151;ubiquitin ligase complex;7.25316830521252e-05!GO:0007050;cell cycle arrest;7.98337557367468e-05!GO:0031497;chromatin assembly;8.20774471060192e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.45089135536764e-05!GO:0003713;transcription coactivator activity;9.2417168554262e-05!GO:0005667;transcription factor complex;9.25158827343937e-05!GO:0033116;ER-Golgi intermediate compartment membrane;9.4210950311172e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000101987596002689!GO:0030133;transport vesicle;0.000106472217541348!GO:0050789;regulation of biological process;0.000106472217541348!GO:0008610;lipid biosynthetic process;0.000118180109595054!GO:0000314;organellar small ribosomal subunit;0.000145502220722212!GO:0005763;mitochondrial small ribosomal subunit;0.000145502220722212!GO:0030867;rough endoplasmic reticulum membrane;0.000146681965612437!GO:0031968;organelle outer membrane;0.000151926533660056!GO:0046474;glycerophospholipid biosynthetic process;0.00015650326467099!GO:0048468;cell development;0.000158063846331053!GO:0019867;outer membrane;0.000158307185002816!GO:0006793;phosphorus metabolic process;0.000171573695830671!GO:0006796;phosphate metabolic process;0.000171573695830671!GO:0000245;spliceosome assembly;0.000174979063233423!GO:0030029;actin filament-based process;0.000176120652530445!GO:0005643;nuclear pore;0.000178444947419324!GO:0016859;cis-trans isomerase activity;0.00018213850842871!GO:0000785;chromatin;0.00018213850842871!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000193287810776829!GO:0016740;transferase activity;0.000193438056941855!GO:0005791;rough endoplasmic reticulum;0.000196716970548343!GO:0007243;protein kinase cascade;0.000228025745051766!GO:0043623;cellular protein complex assembly;0.000230645533664812!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000285437837084764!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000306441842296958!GO:0005741;mitochondrial outer membrane;0.000370303493437848!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000371380705514415!GO:0005048;signal sequence binding;0.000375979599926113!GO:0048518;positive regulation of biological process;0.000397297120962814!GO:0016310;phosphorylation;0.000417965469937577!GO:0007040;lysosome organization and biogenesis;0.000427307952172141!GO:0006979;response to oxidative stress;0.000432282852551228!GO:0043681;protein import into mitochondrion;0.000463462036566425!GO:0016044;membrane organization and biogenesis;0.000481320568311813!GO:0033673;negative regulation of kinase activity;0.000513351202377016!GO:0006469;negative regulation of protein kinase activity;0.000513351202377016!GO:0043021;ribonucleoprotein binding;0.000536564731367829!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000549871276470305!GO:0043566;structure-specific DNA binding;0.000567322615366816!GO:0008092;cytoskeletal protein binding;0.000589833229279776!GO:0046930;pore complex;0.000594497803960943!GO:0005774;vacuolar membrane;0.000597048839650738!GO:0019899;enzyme binding;0.000598733087134515!GO:0004576;oligosaccharyl transferase activity;0.000612883607725125!GO:0008250;oligosaccharyl transferase complex;0.000629093659236412!GO:0007033;vacuole organization and biogenesis;0.000696824616491505!GO:0016126;sterol biosynthetic process;0.000724255646230792!GO:0005885;Arp2/3 protein complex;0.000755085812960201!GO:0046467;membrane lipid biosynthetic process;0.000756873196703339!GO:0030176;integral to endoplasmic reticulum membrane;0.000770042025289552!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000820216185520611!GO:0045941;positive regulation of transcription;0.00083103296926224!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00084790121214472!GO:0005525;GTP binding;0.000907843901616531!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000911561309207561!GO:0005769;early endosome;0.000944993343030366!GO:0007006;mitochondrial membrane organization and biogenesis;0.00098161387525133!GO:0051427;hormone receptor binding;0.0011108498512998!GO:0008637;apoptotic mitochondrial changes;0.00113717771416361!GO:0051920;peroxiredoxin activity;0.00122582694198037!GO:0022890;inorganic cation transmembrane transporter activity;0.00122714992717281!GO:0051348;negative regulation of transferase activity;0.00127760557918452!GO:0008026;ATP-dependent helicase activity;0.00130925365350667!GO:0016787;hydrolase activity;0.00132966157313797!GO:0005581;collagen;0.00142470263244591!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00142470263244591!GO:0015399;primary active transmembrane transporter activity;0.00142470263244591!GO:0009165;nucleotide biosynthetic process;0.00145871618733606!GO:0007010;cytoskeleton organization and biogenesis;0.00146596637736357!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00146596637736357!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00146596637736357!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00146596637736357!GO:0006281;DNA repair;0.00150778558122856!GO:0043488;regulation of mRNA stability;0.00155828527871934!GO:0043487;regulation of RNA stability;0.00155828527871934!GO:0018196;peptidyl-asparagine modification;0.00155828527871934!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00155828527871934!GO:0043284;biopolymer biosynthetic process;0.00169478457817912!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00174298018458928!GO:0015002;heme-copper terminal oxidase activity;0.00174298018458928!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00174298018458928!GO:0004129;cytochrome-c oxidase activity;0.00174298018458928!GO:0065009;regulation of a molecular function;0.00182270753060298!GO:0001836;release of cytochrome c from mitochondria;0.00185505387972502!GO:0044437;vacuolar part;0.00185505387972502!GO:0006082;organic acid metabolic process;0.0018838304080932!GO:0051128;regulation of cellular component organization and biogenesis;0.00194240558041677!GO:0035257;nuclear hormone receptor binding;0.00200946098303022!GO:0030663;COPI coated vesicle membrane;0.00202653420032774!GO:0030126;COPI vesicle coat;0.00202653420032774!GO:0006612;protein targeting to membrane;0.00204518868805526!GO:0043065;positive regulation of apoptosis;0.00211676703082169!GO:0045893;positive regulation of transcription, DNA-dependent;0.0021372305704256!GO:0005765;lysosomal membrane;0.0022567225005809!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00228528884493672!GO:0019752;carboxylic acid metabolic process;0.00228830662456968!GO:0048471;perinuclear region of cytoplasm;0.0023302048765207!GO:0051329;interphase of mitotic cell cycle;0.00239789288034591!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00241273258151962!GO:0016568;chromatin modification;0.00243237272600804!GO:0043068;positive regulation of programmed cell death;0.00246500739215651!GO:0004177;aminopeptidase activity;0.0024864487950021!GO:0051325;interphase;0.00254976171944916!GO:0042802;identical protein binding;0.00256680186337279!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00269675252380587!GO:0045892;negative regulation of transcription, DNA-dependent;0.00280585663965013!GO:0005694;chromosome;0.00302132621305332!GO:0006260;DNA replication;0.0030389802137201!GO:0016779;nucleotidyltransferase activity;0.00309275715635519!GO:0005583;fibrillar collagen;0.0031863788253897!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00333239798375907!GO:0005813;centrosome;0.00352156802084898!GO:0004860;protein kinase inhibitor activity;0.00356663701588401!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00357868046445434!GO:0030137;COPI-coated vesicle;0.00357868046445434!GO:0004386;helicase activity;0.00387351147474031!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00396453337540976!GO:0048487;beta-tubulin binding;0.00400263950753818!GO:0032561;guanyl ribonucleotide binding;0.00409565764815195!GO:0019001;guanyl nucleotide binding;0.00409565764815195!GO:0030132;clathrin coat of coated pit;0.00411683948575548!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00424665780157839!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00424665780157839!GO:0008286;insulin receptor signaling pathway;0.0042790623293217!GO:0006839;mitochondrial transport;0.00430447914105599!GO:0030027;lamellipodium;0.00442193827839581!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00472506733767473!GO:0006414;translational elongation;0.00474176048027694!GO:0015992;proton transport;0.00481379804146972!GO:0005520;insulin-like growth factor binding;0.00481379804146972!GO:0006626;protein targeting to mitochondrion;0.00486535760307086!GO:0008629;induction of apoptosis by intracellular signals;0.00487337802437383!GO:0030041;actin filament polymerization;0.00488646879707664!GO:0008154;actin polymerization and/or depolymerization;0.00491716716229233!GO:0008283;cell proliferation;0.00498281155338518!GO:0030503;regulation of cell redox homeostasis;0.00527323366886873!GO:0046489;phosphoinositide biosynthetic process;0.00529130318557072!GO:0051287;NAD binding;0.00537237338015544!GO:0005815;microtubule organizing center;0.00539993571809678!GO:0030118;clathrin coat;0.00555896032410153!GO:0003724;RNA helicase activity;0.00557906719172424!GO:0003899;DNA-directed RNA polymerase activity;0.00572629540495118!GO:0050657;nucleic acid transport;0.00577214278133255!GO:0051236;establishment of RNA localization;0.00577214278133255!GO:0050658;RNA transport;0.00577214278133255!GO:0008632;apoptotic program;0.00601537037375467!GO:0000786;nucleosome;0.00604353755138688!GO:0006695;cholesterol biosynthetic process;0.00606596641875684!GO:0006403;RNA localization;0.00612388027984401!GO:0006818;hydrogen transport;0.00616806013097329!GO:0031902;late endosome membrane;0.00618806250055168!GO:0030659;cytoplasmic vesicle membrane;0.00619187905466084!GO:0006509;membrane protein ectodomain proteolysis;0.00623900771264037!GO:0033619;membrane protein proteolysis;0.00623900771264037!GO:0003746;translation elongation factor activity;0.00707911608124731!GO:0031072;heat shock protein binding;0.00727839810052109!GO:0005869;dynactin complex;0.00727839810052109!GO:0015630;microtubule cytoskeleton;0.00745059253662919!GO:0043492;ATPase activity, coupled to movement of substances;0.0076676094099986!GO:0043433;negative regulation of transcription factor activity;0.00770376235790328!GO:0016860;intramolecular oxidoreductase activity;0.00792183325838709!GO:0044433;cytoplasmic vesicle part;0.00823539601077384!GO:0048500;signal recognition particle;0.00837892493601662!GO:0017166;vinculin binding;0.00852803271653201!GO:0051252;regulation of RNA metabolic process;0.00875278074105417!GO:0016408;C-acyltransferase activity;0.0088242194007451!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00892709834838119!GO:0008652;amino acid biosynthetic process;0.00895371897578479!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00896715757531967!GO:0045936;negative regulation of phosphate metabolic process;0.00905495912036422!GO:0005975;carbohydrate metabolic process;0.00923318329481957!GO:0051087;chaperone binding;0.00959746567651431!GO:0045792;negative regulation of cell size;0.00976820998653377!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00987765642657159!GO:0030308;negative regulation of cell growth;0.00987765642657159!GO:0006643;membrane lipid metabolic process;0.00992805322288436!GO:0001726;ruffle;0.00993721928130358!GO:0003756;protein disulfide isomerase activity;0.00995362763801792!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00995362763801792!GO:0006778;porphyrin metabolic process;0.010269034476748!GO:0033013;tetrapyrrole metabolic process;0.010269034476748!GO:0009967;positive regulation of signal transduction;0.0103723051420658!GO:0051101;regulation of DNA binding;0.0104361850809817!GO:0000030;mannosyltransferase activity;0.0104631179810955!GO:0001527;microfibril;0.0106268360983197!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0106268360983197!GO:0044427;chromosomal part;0.0106491482126951!GO:0030031;cell projection biogenesis;0.0106491482126951!GO:0006595;polyamine metabolic process;0.0106526586292648!GO:0007034;vacuolar transport;0.0110142226232428!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0112620706164018!GO:0044420;extracellular matrix part;0.0112693888757001!GO:0006749;glutathione metabolic process;0.011346058632639!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0113538340009386!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0114121073125484!GO:0003729;mRNA binding;0.0115420599387211!GO:0006650;glycerophospholipid metabolic process;0.0117649592628852!GO:0043022;ribosome binding;0.0120276694610295!GO:0000049;tRNA binding;0.012660561766178!GO:0051098;regulation of binding;0.012660561766178!GO:0012506;vesicle membrane;0.0132000822399222!GO:0006066;alcohol metabolic process;0.0134325076464173!GO:0016197;endosome transport;0.0138476277757641!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0140652003180201!GO:0045047;protein targeting to ER;0.0140652003180201!GO:0006891;intra-Golgi vesicle-mediated transport;0.0144771991609969!GO:0031589;cell-substrate adhesion;0.0146386226180843!GO:0005684;U2-dependent spliceosome;0.0147565050786502!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0148950356949461!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0148950356949461!GO:0006779;porphyrin biosynthetic process;0.0154263871094514!GO:0033014;tetrapyrrole biosynthetic process;0.0154263871094514!GO:0031301;integral to organelle membrane;0.0155787514996238!GO:0008033;tRNA processing;0.0156505850842867!GO:0035258;steroid hormone receptor binding;0.0157312429306698!GO:0050811;GABA receptor binding;0.0157510557007766!GO:0000902;cell morphogenesis;0.0158375223190194!GO:0032989;cellular structure morphogenesis;0.0158375223190194!GO:0008180;signalosome;0.0159741128265681!GO:0030658;transport vesicle membrane;0.0160777624759557!GO:0003702;RNA polymerase II transcription factor activity;0.0167157741750731!GO:0065007;biological regulation;0.0169762448105218!GO:0043086;negative regulation of catalytic activity;0.0169995372112627!GO:0030134;ER to Golgi transport vesicle;0.0171981591982528!GO:0033559;unsaturated fatty acid metabolic process;0.017204366689196!GO:0006636;unsaturated fatty acid biosynthetic process;0.017204366689196!GO:0050662;coenzyme binding;0.0173712395521216!GO:0015631;tubulin binding;0.0173712395521216!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0175120436627792!GO:0033043;regulation of organelle organization and biogenesis;0.0175120436627792!GO:0045926;negative regulation of growth;0.0175120436627792!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0177498037489306!GO:0001666;response to hypoxia;0.0177954042663353!GO:0006383;transcription from RNA polymerase III promoter;0.0177954042663353!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0177954042663353!GO:0006917;induction of apoptosis;0.0177954042663353!GO:0008139;nuclear localization sequence binding;0.0177954042663353!GO:0006740;NADPH regeneration;0.0178776837980591!GO:0006098;pentose-phosphate shunt;0.0178776837980591!GO:0022403;cell cycle phase;0.0179553386645729!GO:0035035;histone acetyltransferase binding;0.0180214021857597!GO:0019210;kinase inhibitor activity;0.0180420553543321!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0181762221525123!GO:0006354;RNA elongation;0.0182234233428538!GO:0006984;ER-nuclear signaling pathway;0.0184078963522484!GO:0030145;manganese ion binding;0.0187234717203304!GO:0042326;negative regulation of phosphorylation;0.018785540355116!GO:0051540;metal cluster binding;0.0189773142224721!GO:0051536;iron-sulfur cluster binding;0.0189773142224721!GO:0030880;RNA polymerase complex;0.0193156655712624!GO:0031418;L-ascorbic acid binding;0.0193857384248161!GO:0006402;mRNA catabolic process;0.0194737225017723!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0194922352370709!GO:0051059;NF-kappaB binding;0.0195726588183498!GO:0006506;GPI anchor biosynthetic process;0.0199477585587451!GO:0046483;heterocycle metabolic process;0.0202160708303933!GO:0051235;maintenance of localization;0.0204490153133213!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0204600608480187!GO:0008312;7S RNA binding;0.0206062129246373!GO:0019318;hexose metabolic process;0.020636966515896!GO:0030127;COPII vesicle coat;0.0207146078017825!GO:0012507;ER to Golgi transport vesicle membrane;0.0207146078017825!GO:0000096;sulfur amino acid metabolic process;0.0208182176021084!GO:0006807;nitrogen compound metabolic process;0.0208380153298041!GO:0007160;cell-matrix adhesion;0.0211801752498973!GO:0016584;nucleosome positioning;0.0212378704178354!GO:0045045;secretory pathway;0.0212378704178354!GO:0048037;cofactor binding;0.0214048537255026!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0220681114717304!GO:0006417;regulation of translation;0.0220738111758443!GO:0007041;lysosomal transport;0.0227304494888494!GO:0012502;induction of programmed cell death;0.022898707757429!GO:0006118;electron transport;0.0237728125584897!GO:0044255;cellular lipid metabolic process;0.0238915040874745!GO:0003711;transcription elongation regulator activity;0.0243169804619386!GO:0046519;sphingoid metabolic process;0.0246381666193541!GO:0007264;small GTPase mediated signal transduction;0.0246381666193541!GO:0006497;protein amino acid lipidation;0.0246777950894552!GO:0000087;M phase of mitotic cell cycle;0.0253220473190076!GO:0005996;monosaccharide metabolic process;0.025498340887395!GO:0005862;muscle thin filament tropomyosin;0.025536640385793!GO:0007067;mitosis;0.0259271146862!GO:0042158;lipoprotein biosynthetic process;0.0259271146862!GO:0006790;sulfur metabolic process;0.0264510405164505!GO:0051539;4 iron, 4 sulfur cluster binding;0.0272105894908936!GO:0008186;RNA-dependent ATPase activity;0.027214948646304!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0272550108374874!GO:0010257;NADH dehydrogenase complex assembly;0.0272550108374874!GO:0033108;mitochondrial respiratory chain complex assembly;0.0272550108374874!GO:0006401;RNA catabolic process;0.0280548230373889!GO:0030521;androgen receptor signaling pathway;0.0282668963677767!GO:0046870;cadmium ion binding;0.0282762432019326!GO:0000059;protein import into nucleus, docking;0.0287069386500985!GO:0006505;GPI anchor metabolic process;0.0287069386500985!GO:0030433;ER-associated protein catabolic process;0.0287069386500985!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0287069386500985!GO:0031543;peptidyl-proline dioxygenase activity;0.0289564963201175!GO:0030833;regulation of actin filament polymerization;0.029348977455579!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0305143778130771!GO:0008147;structural constituent of bone;0.0306404137539526!GO:0043154;negative regulation of caspase activity;0.0308280247459577!GO:0009303;rRNA transcription;0.0310520013492452!GO:0031272;regulation of pseudopodium formation;0.0310520013492452!GO:0031269;pseudopodium formation;0.0310520013492452!GO:0031344;regulation of cell projection organization and biogenesis;0.0310520013492452!GO:0031268;pseudopodium organization and biogenesis;0.0310520013492452!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0310520013492452!GO:0031274;positive regulation of pseudopodium formation;0.0310520013492452!GO:0005832;chaperonin-containing T-complex;0.0314579360277741!GO:0009893;positive regulation of metabolic process;0.0316649915778215!GO:0048144;fibroblast proliferation;0.0324673963504508!GO:0048145;regulation of fibroblast proliferation;0.0324673963504508!GO:0016363;nuclear matrix;0.0328246354566746!GO:0006644;phospholipid metabolic process;0.0331808289656496!GO:0030119;AP-type membrane coat adaptor complex;0.0331816780826761!GO:0040029;regulation of gene expression, epigenetic;0.0333234860975997!GO:0042168;heme metabolic process;0.0337666296795293!GO:0019798;procollagen-proline dioxygenase activity;0.0339140942488686!GO:0051168;nuclear export;0.0340031128041358!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0340061154852828!GO:0000082;G1/S transition of mitotic cell cycle;0.0345780734447554!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0360737782023479!GO:0030660;Golgi-associated vesicle membrane;0.0363669058299341!GO:0050790;regulation of catalytic activity;0.0368967457916219!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0373552740168165!GO:0000428;DNA-directed RNA polymerase complex;0.0373552740168165!GO:0009889;regulation of biosynthetic process;0.0373552740168165!GO:0001953;negative regulation of cell-matrix adhesion;0.0373759494770099!GO:0048146;positive regulation of fibroblast proliferation;0.0381728452510987!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.038241457472006!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.038241457472006!GO:0006733;oxidoreduction coenzyme metabolic process;0.0383210815061648!GO:0030508;thiol-disulfide exchange intermediate activity;0.0385604642240567!GO:0051270;regulation of cell motility;0.038880748555054!GO:0006458;'de novo' protein folding;0.0398647992797028!GO:0051084;'de novo' posttranslational protein folding;0.0398647992797028!GO:0006672;ceramide metabolic process;0.0404808915558371!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0406278481041069!GO:0031326;regulation of cellular biosynthetic process;0.0406497105255289!GO:0016407;acetyltransferase activity;0.0409741481308676!GO:0009308;amine metabolic process;0.0409741481308676!GO:0046426;negative regulation of JAK-STAT cascade;0.0410456297595158!GO:0006352;transcription initiation;0.0412923214840535!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0418069370105982!GO:0051338;regulation of transferase activity;0.0421988998394058!GO:0051028;mRNA transport;0.0423688863547964!GO:0019206;nucleoside kinase activity;0.0427243103240926!GO:0032507;maintenance of cellular protein localization;0.0427309196986474!GO:0030518;steroid hormone receptor signaling pathway;0.0430238742540127!GO:0030832;regulation of actin filament length;0.0437965752628273!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0440671218649684!GO:0055092;sterol homeostasis;0.0440671218649684!GO:0042632;cholesterol homeostasis;0.0440671218649684!GO:0031901;early endosome membrane;0.0443767819861581!GO:0006914;autophagy;0.0444811261831399!GO:0031529;ruffle organization and biogenesis;0.0447459246945568!GO:0031625;ubiquitin protein ligase binding;0.0449977197573172!GO:0030199;collagen fibril organization;0.0450375144238964!GO:0030125;clathrin vesicle coat;0.0453167290812098!GO:0030665;clathrin coated vesicle membrane;0.0453167290812098!GO:0016272;prefoldin complex;0.0454442819143392!GO:0006892;post-Golgi vesicle-mediated transport;0.0454784020124706!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0459455450828832!GO:0022408;negative regulation of cell-cell adhesion;0.0463024575922459!GO:0006013;mannose metabolic process;0.0474205831171545!GO:0006950;response to stress;0.0491370309730818 | |||
|sample_id=11425 | |sample_id=11425 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=bone | |sample_tissue=bone | ||
|top_motifs=HES1:1.77216532903;ZNF238:1.60185312871;TBP:1.44554122148;IKZF1:1.43376415925;ZNF423:1.3601962402;MTF1:1.3137049724;ESR1:1.24943103433;RXR{A,B,G}:1.24858552675;GLI1..3:1.24746777343;HMX1:1.21892174947;TAL1_TCF{3,4,12}:1.1608779121;bHLH_family:1.13239092173;TFAP4:1.05588170978;TLX1..3_NFIC{dimer}:1.03787041297;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.02876197408;ZNF148:0.98609783503;ATF6:0.976909935083;XBP1:0.972148112313;GFI1B:0.906529691588;TFCP2:0.9052599199;UFEwm:0.895982859092;RXRA_VDR{dimer}:0.872190940129;SPZ1:0.86115044644;TFAP2B:0.860337803311;NR3C1:0.849276761362;GTF2A1,2:0.842171550488;LHX3,4:0.835492971852;NHLH1,2:0.825345799893;HOX{A6,A7,B6,B7}:0.813325242657;EBF1:0.795213424921;PAX5:0.790334825559;NR6A1:0.763044446901;GTF2I:0.731209209722;HIC1:0.727293228587;AR:0.711200609046;MAZ:0.692663473893;GCM1,2:0.676321669906;TFAP2{A,C}:0.65819802874;TP53:0.644221194065;MAFB:0.641691244497;SMAD1..7,9:0.569408614678;TEAD1:0.560022967723;MED-1{core}:0.536503402992;STAT5{A,B}:0.522718204899;PATZ1:0.510246470531;PPARG:0.47085282058;ZBTB6:0.433860835962;RREB1:0.425886064287;SREBF1,2:0.408653121464;MYFfamily:0.403987337741;HOX{A5,B5}:0.377411649254;SP1:0.346998186433;SRF:0.311528237737;GFI1:0.301784920416;ALX4:0.287879606091;KLF4:0.279992938543;XCPE1{core}:0.278724069296;EGR1..3:0.273365063512;HLF:0.261327575498;ZNF384:0.257778845565;MZF1:0.256467748354;FOXO1,3,4:0.254701785753;NFATC1..3:0.240179713267;REST:0.236832983289;NFE2L1:0.232739332259;HAND1,2:0.231043940661;MYBL2:0.22736498713;SOX17:0.178688547662;POU3F1..4:0.131919665677;GZF1:0.118144409336;MTE{core}:0.107594444281;AIRE:0.0859279553855;PAX1,9:0.0803055502461;YY1:0.0795808714296;STAT2,4,6:0.0719247824139;NR1H4:0.0702403389982;AHR_ARNT_ARNT2:0.0641851157455;ZIC1..3:0.0514726314997;POU2F1..3:0.0422756711484;NANOG{mouse}:0.0356070405151;POU6F1:0.0200538422302;PRRX1,2:0.014487031628;RORA:-0.020645582271;NKX2-3_NKX2-5:-0.0489538770293;FOS_FOS{B,L1}_JUN{B,D}:-0.0522759201472;HNF1A:-0.0719518125605;ZNF143:-0.0740155326071;NR5A1,2:-0.0764458806688;BACH2:-0.0914738494219;TBX4,5:-0.107954397595;TFDP1:-0.113478417542;HIF1A:-0.118299634311;ESRRA:-0.124650334788;FOXL1:-0.125514703178;RFX1:-0.1327071915;HNF4A_NR2F1,2:-0.138901229558;NFE2L2:-0.15952433543;LEF1_TCF7_TCF7L1,2:-0.17119753991;PRDM1:-0.174948403029;NFE2:-0.179991370431;TOPORS:-0.187533529178;FOSL2:-0.191445373322;TGIF1:-0.19656047264;NFIX:-0.198944332639;CEBPA,B_DDIT3:-0.214417576824;MEF2{A,B,C,D}:-0.217214934812;MYOD1:-0.255520964877;ZFP161:-0.277116599596;NKX3-2:-0.277447064291;NFIL3:-0.281178646088;NFY{A,B,C}:-0.287257533173;EN1,2:-0.292642257055;RUNX1..3:-0.319057265435;BREu{core}:-0.32314955516;JUN:-0.329286018684;NKX2-2,8:-0.360746570869;EVI1:-0.362604958699;NFKB1_REL_RELA:-0.363552588488;VSX1,2:-0.364154218539;ADNP_IRX_SIX_ZHX:-0.367224085257;SOX5:-0.388399573275;ALX1:-0.390846840247;NKX3-1:-0.393290226661;PBX1:-0.405162123977;DBP:-0.409073205545;FOX{D1,D2}:-0.411690475467;PAX6:-0.441976386587;GATA4:-0.472681555714;CDC5L:-0.491590860585;ARID5B:-0.491972251554;ZEB1:-0.497345128866;HOX{A4,D4}:-0.499627352393;PAX8:-0.504499321175;FOXP3:-0.527993971755;ONECUT1,2:-0.53313507069;ATF2:-0.537240692652;STAT1,3:-0.542841769046;GATA6:-0.557299406641;LMO2:-0.558458965088;SOX{8,9,10}:-0.562299570695;CDX1,2,4:-0.563676144486;POU5F1:-0.576618760336;RBPJ:-0.578533654534;TLX2:-0.580435393355;CREB1:-0.583828863122;SPI1:-0.585358812898;NRF1:-0.587866799909;ATF4:-0.607067724236;FOXM1:-0.613133959575;NKX2-1,4:-0.616158595562;FOX{F1,F2,J1}:-0.618435652562;ETS1,2:-0.625104225367;CUX2:-0.628106126755;NANOG:-0.667684789628;SNAI1..3:-0.672654228451;PAX4:-0.681202371905;PAX2:-0.681248263488;MYB:-0.681612144069;DMAP1_NCOR{1,2}_SMARC:-0.692585206396;IRF1,2:-0.70365737285;SPIB:-0.705159491586;NKX6-1,2:-0.705246088339;ATF5_CREB3:-0.707986884341;PITX1..3:-0.710687180371;ELK1,4_GABP{A,B1}:-0.719782741067;TEF:-0.720394588884;HSF1,2:-0.728065614022;HMGA1,2:-0.729469879695;FOXQ1:-0.757979932638;POU1F1:-0.788779319805;SOX2:-0.789305952704;RFX2..5_RFXANK_RFXAP:-0.810659678785;EP300:-0.812958365813;BPTF:-0.832594207471;IRF7:-0.836007486539;E2F1..5:-0.85605316677;ZBTB16:-0.865722551759;HOXA9_MEIS1:-0.963255927983;OCT4_SOX2{dimer}:-0.983759783209;HBP1_HMGB_SSRP1_UBTF:-1.05095193765;ELF1,2,4:-1.08104340104;PAX3,7:-1.16146065779;FOXA2:-1.26914796718;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.27418855585;FOX{I1,J2}:-1.31781257113;IKZF2:-1.45222535354;T:-1.46259123685;CRX:-1.46489331714;FOXD3:-1.51472195341;FOXP1:-1.53176301624;FOXN1:-1.63502948034;PDX1:-1.91137948069 | |top_motifs=HES1:1.77216532903;ZNF238:1.60185312871;TBP:1.44554122148;IKZF1:1.43376415925;ZNF423:1.3601962402;MTF1:1.3137049724;ESR1:1.24943103433;RXR{A,B,G}:1.24858552675;GLI1..3:1.24746777343;HMX1:1.21892174947;TAL1_TCF{3,4,12}:1.1608779121;bHLH_family:1.13239092173;TFAP4:1.05588170978;TLX1..3_NFIC{dimer}:1.03787041297;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.02876197408;ZNF148:0.98609783503;ATF6:0.976909935083;XBP1:0.972148112313;GFI1B:0.906529691588;TFCP2:0.9052599199;UFEwm:0.895982859092;RXRA_VDR{dimer}:0.872190940129;SPZ1:0.86115044644;TFAP2B:0.860337803311;NR3C1:0.849276761362;GTF2A1,2:0.842171550488;LHX3,4:0.835492971852;NHLH1,2:0.825345799893;HOX{A6,A7,B6,B7}:0.813325242657;EBF1:0.795213424921;PAX5:0.790334825559;NR6A1:0.763044446901;GTF2I:0.731209209722;HIC1:0.727293228587;AR:0.711200609046;MAZ:0.692663473893;GCM1,2:0.676321669906;TFAP2{A,C}:0.65819802874;TP53:0.644221194065;MAFB:0.641691244497;SMAD1..7,9:0.569408614678;TEAD1:0.560022967723;MED-1{core}:0.536503402992;STAT5{A,B}:0.522718204899;PATZ1:0.510246470531;PPARG:0.47085282058;ZBTB6:0.433860835962;RREB1:0.425886064287;SREBF1,2:0.408653121464;MYFfamily:0.403987337741;HOX{A5,B5}:0.377411649254;SP1:0.346998186433;SRF:0.311528237737;GFI1:0.301784920416;ALX4:0.287879606091;KLF4:0.279992938543;XCPE1{core}:0.278724069296;EGR1..3:0.273365063512;HLF:0.261327575498;ZNF384:0.257778845565;MZF1:0.256467748354;FOXO1,3,4:0.254701785753;NFATC1..3:0.240179713267;REST:0.236832983289;NFE2L1:0.232739332259;HAND1,2:0.231043940661;MYBL2:0.22736498713;SOX17:0.178688547662;POU3F1..4:0.131919665677;GZF1:0.118144409336;MTE{core}:0.107594444281;AIRE:0.0859279553855;PAX1,9:0.0803055502461;YY1:0.0795808714296;STAT2,4,6:0.0719247824139;NR1H4:0.0702403389982;AHR_ARNT_ARNT2:0.0641851157455;ZIC1..3:0.0514726314997;POU2F1..3:0.0422756711484;NANOG{mouse}:0.0356070405151;POU6F1:0.0200538422302;PRRX1,2:0.014487031628;RORA:-0.020645582271;NKX2-3_NKX2-5:-0.0489538770293;FOS_FOS{B,L1}_JUN{B,D}:-0.0522759201472;HNF1A:-0.0719518125605;ZNF143:-0.0740155326071;NR5A1,2:-0.0764458806688;BACH2:-0.0914738494219;TBX4,5:-0.107954397595;TFDP1:-0.113478417542;HIF1A:-0.118299634311;ESRRA:-0.124650334788;FOXL1:-0.125514703178;RFX1:-0.1327071915;HNF4A_NR2F1,2:-0.138901229558;NFE2L2:-0.15952433543;LEF1_TCF7_TCF7L1,2:-0.17119753991;PRDM1:-0.174948403029;NFE2:-0.179991370431;TOPORS:-0.187533529178;FOSL2:-0.191445373322;TGIF1:-0.19656047264;NFIX:-0.198944332639;CEBPA,B_DDIT3:-0.214417576824;MEF2{A,B,C,D}:-0.217214934812;MYOD1:-0.255520964877;ZFP161:-0.277116599596;NKX3-2:-0.277447064291;NFIL3:-0.281178646088;NFY{A,B,C}:-0.287257533173;EN1,2:-0.292642257055;RUNX1..3:-0.319057265435;BREu{core}:-0.32314955516;JUN:-0.329286018684;NKX2-2,8:-0.360746570869;EVI1:-0.362604958699;NFKB1_REL_RELA:-0.363552588488;VSX1,2:-0.364154218539;ADNP_IRX_SIX_ZHX:-0.367224085257;SOX5:-0.388399573275;ALX1:-0.390846840247;NKX3-1:-0.393290226661;PBX1:-0.405162123977;DBP:-0.409073205545;FOX{D1,D2}:-0.411690475467;PAX6:-0.441976386587;GATA4:-0.472681555714;CDC5L:-0.491590860585;ARID5B:-0.491972251554;ZEB1:-0.497345128866;HOX{A4,D4}:-0.499627352393;PAX8:-0.504499321175;FOXP3:-0.527993971755;ONECUT1,2:-0.53313507069;ATF2:-0.537240692652;STAT1,3:-0.542841769046;GATA6:-0.557299406641;LMO2:-0.558458965088;SOX{8,9,10}:-0.562299570695;CDX1,2,4:-0.563676144486;POU5F1:-0.576618760336;RBPJ:-0.578533654534;TLX2:-0.580435393355;CREB1:-0.583828863122;SPI1:-0.585358812898;NRF1:-0.587866799909;ATF4:-0.607067724236;FOXM1:-0.613133959575;NKX2-1,4:-0.616158595562;FOX{F1,F2,J1}:-0.618435652562;ETS1,2:-0.625104225367;CUX2:-0.628106126755;NANOG:-0.667684789628;SNAI1..3:-0.672654228451;PAX4:-0.681202371905;PAX2:-0.681248263488;MYB:-0.681612144069;DMAP1_NCOR{1,2}_SMARC:-0.692585206396;IRF1,2:-0.70365737285;SPIB:-0.705159491586;NKX6-1,2:-0.705246088339;ATF5_CREB3:-0.707986884341;PITX1..3:-0.710687180371;ELK1,4_GABP{A,B1}:-0.719782741067;TEF:-0.720394588884;HSF1,2:-0.728065614022;HMGA1,2:-0.729469879695;FOXQ1:-0.757979932638;POU1F1:-0.788779319805;SOX2:-0.789305952704;RFX2..5_RFXANK_RFXAP:-0.810659678785;EP300:-0.812958365813;BPTF:-0.832594207471;IRF7:-0.836007486539;E2F1..5:-0.85605316677;ZBTB16:-0.865722551759;HOXA9_MEIS1:-0.963255927983;OCT4_SOX2{dimer}:-0.983759783209;HBP1_HMGB_SSRP1_UBTF:-1.05095193765;ELF1,2,4:-1.08104340104;PAX3,7:-1.16146065779;FOXA2:-1.26914796718;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.27418855585;FOX{I1,J2}:-1.31781257113;IKZF2:-1.45222535354;T:-1.46259123685;CRX:-1.46489331714;FOXD3:-1.51472195341;FOXP1:-1.53176301624;FOXN1:-1.63502948034;PDX1:-1.91137948069 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11425-118G3;search_select_hide=table117:FF:11425-118G3 | |||
}} | }} | ||
Latest revision as of 18:00, 4 June 2020
| Name: | Osteoblast - differentiated, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12035 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12035
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12035
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.407 |
| 10 | 10 | 0.151 |
| 100 | 100 | 0.728 |
| 101 | 101 | 0.588 |
| 102 | 102 | 0.542 |
| 103 | 103 | 0.634 |
| 104 | 104 | 0.342 |
| 105 | 105 | 0.866 |
| 106 | 106 | 0.323 |
| 107 | 107 | 0.0448 |
| 108 | 108 | 0.286 |
| 109 | 109 | 0.569 |
| 11 | 11 | 0.768 |
| 110 | 110 | 0.807 |
| 111 | 111 | 0.571 |
| 112 | 112 | 0.892 |
| 113 | 113 | 0.638 |
| 114 | 114 | 0.366 |
| 115 | 115 | 0.00379 |
| 116 | 116 | 0.0313 |
| 117 | 117 | 0.232 |
| 118 | 118 | 0.457 |
| 119 | 119 | 0.854 |
| 12 | 12 | 0.515 |
| 120 | 120 | 0.115 |
| 121 | 121 | 0.465 |
| 122 | 122 | 0.228 |
| 123 | 123 | 8.39511e-4 |
| 124 | 124 | 0.0183 |
| 125 | 125 | 0.916 |
| 126 | 126 | 0.777 |
| 127 | 127 | 0.971 |
| 128 | 128 | 0.0469 |
| 129 | 129 | 0.828 |
| 13 | 13 | 0.493 |
| 130 | 130 | 0.343 |
| 131 | 131 | 0.319 |
| 132 | 132 | 0.0622 |
| 133 | 133 | 0.182 |
| 134 | 134 | 0.978 |
| 135 | 135 | 0.915 |
| 136 | 136 | 0.962 |
| 137 | 137 | 0.019 |
| 138 | 138 | 0.678 |
| 139 | 139 | 0.798 |
| 14 | 14 | 0.82 |
| 140 | 140 | 0.573 |
| 141 | 141 | 0.117 |
| 142 | 142 | 0.0581 |
| 143 | 143 | 0.59 |
| 144 | 144 | 0.877 |
| 145 | 145 | 0.656 |
| 146 | 146 | 0.139 |
| 147 | 147 | 0.414 |
| 148 | 148 | 0.862 |
| 149 | 149 | 0.0396 |
| 15 | 15 | 0.352 |
| 150 | 150 | 0.284 |
| 151 | 151 | 0.517 |
| 152 | 152 | 0.0098 |
| 153 | 153 | 0.879 |
| 154 | 154 | 0.144 |
| 155 | 155 | 0.32 |
| 156 | 156 | 0.748 |
| 157 | 157 | 0.5 |
| 158 | 158 | 0.1 |
| 159 | 159 | 0.636 |
| 16 | 16 | 0.379 |
| 160 | 160 | 0.495 |
| 161 | 161 | 0.611 |
| 162 | 162 | 0.27 |
| 163 | 163 | 0.155 |
| 164 | 164 | 0.703 |
| 165 | 165 | 0.774 |
| 166 | 166 | 0.103 |
| 167 | 167 | 0.353 |
| 168 | 168 | 0.955 |
| 169 | 169 | 0.264 |
| 17 | 17 | 0.952 |
| 18 | 18 | 0.337 |
| 19 | 19 | 0.113 |
| 2 | 2 | 0.122 |
| 20 | 20 | 0.531 |
| 21 | 21 | 0.76 |
| 22 | 22 | 0.265 |
| 23 | 23 | 0.844 |
| 24 | 24 | 0.807 |
| 25 | 25 | 0.115 |
| 26 | 26 | 0.98 |
| 27 | 27 | 0.388 |
| 28 | 28 | 0.0614 |
| 29 | 29 | 0.341 |
| 3 | 3 | 0.448 |
| 30 | 30 | 0.375 |
| 31 | 31 | 0.243 |
| 32 | 32 | 3.19379e-8 |
| 33 | 33 | 0.684 |
| 34 | 34 | 0.648 |
| 35 | 35 | 0.342 |
| 36 | 36 | 0.128 |
| 37 | 37 | 0.211 |
| 38 | 38 | 0.946 |
| 39 | 39 | 0.496 |
| 4 | 4 | 0.937 |
| 40 | 40 | 0.777 |
| 41 | 41 | 0.113 |
| 42 | 42 | 0.0764 |
| 43 | 43 | 0.802 |
| 44 | 44 | 0.945 |
| 45 | 45 | 0.501 |
| 46 | 46 | 0.91 |
| 47 | 47 | 0.516 |
| 48 | 48 | 0.996 |
| 49 | 49 | 0.768 |
| 5 | 5 | 0.381 |
| 50 | 50 | 0.873 |
| 51 | 51 | 0.477 |
| 52 | 52 | 0.335 |
| 53 | 53 | 0.19 |
| 54 | 54 | 0.523 |
| 55 | 55 | 0.625 |
| 56 | 56 | 0.826 |
| 57 | 57 | 0.539 |
| 58 | 58 | 0.0973 |
| 59 | 59 | 0.0747 |
| 6 | 6 | 0.977 |
| 60 | 60 | 0.677 |
| 61 | 61 | 0.813 |
| 62 | 62 | 0.0933 |
| 63 | 63 | 0.779 |
| 64 | 64 | 0.787 |
| 65 | 65 | 0.201 |
| 66 | 66 | 0.727 |
| 67 | 67 | 0.94 |
| 68 | 68 | 0.267 |
| 69 | 69 | 0.334 |
| 7 | 7 | 0.128 |
| 70 | 70 | 0.977 |
| 71 | 71 | 0.243 |
| 72 | 72 | 0.863 |
| 73 | 73 | 0.00356 |
| 74 | 74 | 0.76 |
| 75 | 75 | 0.473 |
| 76 | 76 | 0.299 |
| 77 | 77 | 0.0936 |
| 78 | 78 | 0.179 |
| 79 | 79 | 0.0522 |
| 8 | 8 | 0.171 |
| 80 | 80 | 0.602 |
| 81 | 81 | 0.91 |
| 82 | 82 | 0.885 |
| 83 | 83 | 0.374 |
| 84 | 84 | 0.359 |
| 85 | 85 | 0.214 |
| 86 | 86 | 0.657 |
| 87 | 87 | 0.0733 |
| 88 | 88 | 0.33 |
| 89 | 89 | 0.112 |
| 9 | 9 | 0.269 |
| 90 | 90 | 0.00392 |
| 91 | 91 | 0.738 |
| 92 | 92 | 0.515 |
| 93 | 93 | 0.944 |
| 94 | 94 | 0.213 |
| 95 | 95 | 0.779 |
| 96 | 96 | 0.94 |
| 97 | 97 | 0.41 |
| 98 | 98 | 0.964 |
| 99 | 99 | 0.0179 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12035
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000127 human osteoblast-Sciencell sample
FF:0000128 human osteoblast-Cell applications sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000062 (osteoblast)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000127 (human osteoblast-Sciencell sample)
0000128 (human osteoblast-Cell applications sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000335 (mesenchyme condensation cell)
