FF:11399-118D4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000019,UBERON: | |DRA_sample_Accession=CAGE@SAMD00005448 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005448 | ||
|accession_numbers=CAGE;DRX008208;DRR009080;DRZ000505;DRZ001890;DRZ011855;DRZ013240 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037241;DRR041607;DRZ007249 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000020,UBERON:0010371,UBERON:0002203,UBERON:0001768,UBERON:0000488,UBERON:0007625,UBERON:0001032,UBERON:0002049,UBERON:0002200,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001778,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0004535,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0001775,UBERON:0010230,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000064,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000067,CL:0005012,CL:0002304 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000040 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor3.CNhs12009.11399-118D4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor3.CNhs12009.11399-118D4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor3.CNhs12009.11399-118D4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor3.CNhs12009.11399-118D4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor3.CNhs12009.11399-118D4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11399-118D4 | |id=FF:11399-118D4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000040 | ||
|is_obsolete= | |||
|library_id=CNhs12009 | |||
|library_id_phase_based=2:CNhs12009 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11399 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.GTGAAA.11399 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11399 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.GTGAAA.11399 | |||
|name=Ciliary Epithelial Cells, donor3 | |name=Ciliary Epithelial Cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12009,LSID837,release011,COMPLETED | |profile_hcage=CNhs12009,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10014,,, | |profile_srnaseq=SRhi10014,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0182814710679588,0.0168799829746883,0.0351426389789301,0,0,-0.00220474719335345,0,0.0352419920677512,-0.0487945258382256,0,0.0365629421359175,0,0,0,0,0,0,0,0,0,0,0,0.351266046034402,0,0,0,0,0,0.175818127421407,0,0,-0.00219223309519676,0,0,0,0,0,0,0,0,0,0,0.0365629421359175,0,0.203911252052648,0.0220632027188061,0,0,0,0,0,0,0,0.0919555291706844,0,0.0365629421359175,0,0.365023825333551,0,0.0642175341031238,0.101576743883372,0.111138078462222,0,0,0.00423311667027503,0,0,0,0,0,0,0,0,0.0702852779578603,0,0.0702852779578603,0,0,0.0365629421359175,0,0,0.0157050047309437,-0.033364738828992,0.0534241100468889,0,0,0,0,0.0561820140139555,0.0702852779578603,0.0182814710679588,0,0.0365629421359175,0.0723175298718403,0.168373470642056,0,0.101576743883372,0.0182814710679588,0.293623857849977,0.0858061642078855,0.0451990210560873,0,0,0,0.0365629421359175,0,0.0182814710679588,0,0,0,0,0,0,0,0,0,0,0,-0.0429494838755723,0.0365629421359175,0,0,0.048131566743757,0.0853850048937449,0,0,0,0,0,0 | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=SC6585 | |rna_catalog_number=SC6585 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118D4 | |rna_tube_id=118D4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10014.GTGAAA | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.6841828701975e-250!GO:0005737;cytoplasm;1.83620691527833e-199!GO:0043226;organelle;2.65733695271791e-194!GO:0043229;intracellular organelle;4.46524377877477e-194!GO:0043231;intracellular membrane-bound organelle;9.56699306986944e-188!GO:0043227;membrane-bound organelle;1.43355035947425e-187!GO:0044422;organelle part;2.17981177272889e-141!GO:0044446;intracellular organelle part;9.70698270857418e-140!GO:0044444;cytoplasmic part;1.63024908917656e-126!GO:0032991;macromolecular complex;1.80671196945072e-97!GO:0005515;protein binding;5.15021321353625e-93!GO:0044237;cellular metabolic process;8.20468786078283e-83!GO:0030529;ribonucleoprotein complex;1.90438781711921e-82!GO:0044238;primary metabolic process;4.43140222466164e-82!GO:0005634;nucleus;1.7134753400488e-76!GO:0043170;macromolecule metabolic process;1.87213585085963e-75!GO:0043233;organelle lumen;5.09585937430685e-71!GO:0031974;membrane-enclosed lumen;5.09585937430685e-71!GO:0044428;nuclear part;2.65500622850587e-70!GO:0003723;RNA binding;5.56893798797201e-69!GO:0005739;mitochondrion;4.11353374160264e-61!GO:0016043;cellular component organization and biogenesis;1.30557999810359e-59!GO:0005840;ribosome;1.1963847728125e-50!GO:0043234;protein complex;1.39102910931342e-49!GO:0006412;translation;1.00389754030126e-48!GO:0031090;organelle membrane;1.20361449110966e-48!GO:0019538;protein metabolic process;1.20361449110966e-48!GO:0033036;macromolecule localization;3.05431284982751e-47!GO:0015031;protein transport;4.89691128924861e-46!GO:0043283;biopolymer metabolic process;5.3166236927609e-45!GO:0003735;structural constituent of ribosome;3.63636806890366e-44!GO:0006396;RNA processing;7.89245136340468e-44!GO:0044260;cellular macromolecule metabolic process;1.34181775499213e-43!GO:0008104;protein localization;2.01699310816493e-43!GO:0045184;establishment of protein localization;5.0803475508853e-43!GO:0044267;cellular protein metabolic process;6.51005992909089e-43!GO:0031981;nuclear lumen;1.00231003597243e-42!GO:0044429;mitochondrial part;5.38419737421899e-41!GO:0009058;biosynthetic process;9.57972291172614e-41!GO:0031967;organelle envelope;1.18481800673687e-39!GO:0010467;gene expression;3.17494069955537e-39!GO:0031975;envelope;3.32605571765538e-39!GO:0046907;intracellular transport;3.41090914435304e-39!GO:0044249;cellular biosynthetic process;1.10716320348962e-38!GO:0033279;ribosomal subunit;2.30904867596018e-38!GO:0006996;organelle organization and biogenesis;4.96404700703658e-38!GO:0043228;non-membrane-bound organelle;7.79533898707933e-37!GO:0043232;intracellular non-membrane-bound organelle;7.79533898707933e-37!GO:0009059;macromolecule biosynthetic process;1.14833443516179e-36!GO:0016071;mRNA metabolic process;1.3132697869863e-36!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.56534305521956e-35!GO:0005829;cytosol;2.7057035221159e-35!GO:0008380;RNA splicing;1.42173024502416e-33!GO:0065003;macromolecular complex assembly;7.79075011869929e-33!GO:0006886;intracellular protein transport;2.04812568375195e-32!GO:0006397;mRNA processing;2.19163124349337e-30!GO:0022607;cellular component assembly;9.02418408500626e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.38540111902261e-28!GO:0005654;nucleoplasm;6.57046195859375e-27!GO:0005740;mitochondrial envelope;1.47155354501409e-26!GO:0051641;cellular localization;1.76448744446115e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.61081733874427e-26!GO:0006259;DNA metabolic process;2.74501442374053e-26!GO:0051649;establishment of cellular localization;2.83764402308339e-26!GO:0019866;organelle inner membrane;5.22936056749062e-26!GO:0031966;mitochondrial membrane;4.98599511618555e-25!GO:0007049;cell cycle;2.74723090902611e-24!GO:0005743;mitochondrial inner membrane;8.53536904110057e-24!GO:0005681;spliceosome;3.49996521111296e-23!GO:0044445;cytosolic part;1.39559158987036e-22!GO:0000166;nucleotide binding;4.18437333471403e-22!GO:0044451;nucleoplasm part;5.78153808852477e-22!GO:0006119;oxidative phosphorylation;1.56456003030766e-21!GO:0012505;endomembrane system;1.10488895859845e-20!GO:0003676;nucleic acid binding;1.28195112029848e-20!GO:0015934;large ribosomal subunit;2.57912008820781e-20!GO:0044455;mitochondrial membrane part;5.0341053179289e-19!GO:0015935;small ribosomal subunit;5.22671683463954e-19!GO:0022402;cell cycle process;1.40085677485538e-18!GO:0016874;ligase activity;1.06427189789382e-17!GO:0006457;protein folding;1.22606461281354e-17!GO:0016462;pyrophosphatase activity;1.28474806841871e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.70980470918704e-17!GO:0031980;mitochondrial lumen;1.70980470918704e-17!GO:0005759;mitochondrial matrix;1.70980470918704e-17!GO:0000278;mitotic cell cycle;2.11033682751097e-17!GO:0048770;pigment granule;2.45167596101629e-17!GO:0042470;melanosome;2.45167596101629e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;2.60930372171051e-17!GO:0005783;endoplasmic reticulum;3.29055183021994e-17!GO:0006512;ubiquitin cycle;9.95301485158558e-17!GO:0017111;nucleoside-triphosphatase activity;1.07439754031959e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.2426886034189e-16!GO:0005794;Golgi apparatus;1.3191395739921e-16!GO:0044265;cellular macromolecule catabolic process;1.3191395739921e-16!GO:0019941;modification-dependent protein catabolic process;2.07753941057303e-16!GO:0043632;modification-dependent macromolecule catabolic process;2.07753941057303e-16!GO:0006511;ubiquitin-dependent protein catabolic process;2.39218828771624e-16!GO:0022618;protein-RNA complex assembly;2.61185868812823e-16!GO:0006605;protein targeting;3.78470987100938e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.78470987100938e-16!GO:0044257;cellular protein catabolic process;3.89140102273949e-16!GO:0005746;mitochondrial respiratory chain;3.89140102273949e-16!GO:0008134;transcription factor binding;4.00334491236131e-16!GO:0016070;RNA metabolic process;6.42501966759926e-16!GO:0000502;proteasome complex (sensu Eukaryota);7.55213616359277e-16!GO:0043412;biopolymer modification;2.11096451878288e-15!GO:0043285;biopolymer catabolic process;2.80594677940481e-15!GO:0005730;nucleolus;2.8851225395612e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.13109055112547e-15!GO:0003954;NADH dehydrogenase activity;3.13109055112547e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.13109055112547e-15!GO:0044432;endoplasmic reticulum part;8.8336686152329e-15!GO:0032553;ribonucleotide binding;9.44586688576091e-15!GO:0032555;purine ribonucleotide binding;9.44586688576091e-15!GO:0016192;vesicle-mediated transport;1.47536161482409e-14!GO:0048193;Golgi vesicle transport;1.5838228973331e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.10344030766814e-14!GO:0030163;protein catabolic process;3.69465238719892e-14!GO:0017076;purine nucleotide binding;3.70945897281757e-14!GO:0005761;mitochondrial ribosome;3.74409817760486e-14!GO:0000313;organellar ribosome;3.74409817760486e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.56765870057173e-14!GO:0009057;macromolecule catabolic process;5.32422960326432e-14!GO:0006464;protein modification process;6.53252935217116e-14!GO:0051276;chromosome organization and biogenesis;1.03716737188024e-13!GO:0005635;nuclear envelope;1.49057395579702e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.93349218111497e-13!GO:0042773;ATP synthesis coupled electron transport;1.93349218111497e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.33843892456107e-13!GO:0045271;respiratory chain complex I;2.33843892456107e-13!GO:0005747;mitochondrial respiratory chain complex I;2.33843892456107e-13!GO:0022403;cell cycle phase;3.41579027874763e-13!GO:0008135;translation factor activity, nucleic acid binding;3.58305461761217e-13!GO:0048523;negative regulation of cellular process;3.58305461761217e-13!GO:0006974;response to DNA damage stimulus;3.70788152122933e-13!GO:0005694;chromosome;3.99081054871555e-13!GO:0051186;cofactor metabolic process;4.58597347132381e-13!GO:0031965;nuclear membrane;6.55632387502106e-13!GO:0044248;cellular catabolic process;7.07506731263132e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.16058766480066e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.34157286019952e-12!GO:0012501;programmed cell death;1.76903158586384e-12!GO:0043687;post-translational protein modification;1.81942751601766e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;2.29842731513564e-12!GO:0000375;RNA splicing, via transesterification reactions;2.29842731513564e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.29842731513564e-12!GO:0000087;M phase of mitotic cell cycle;2.70987219419526e-12!GO:0006915;apoptosis;3.3622143860621e-12!GO:0051082;unfolded protein binding;3.56933097823533e-12!GO:0044427;chromosomal part;4.32839238407825e-12!GO:0007067;mitosis;4.47928672128885e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;4.56171483444367e-12!GO:0044453;nuclear membrane part;8.99569196925588e-12!GO:0006913;nucleocytoplasmic transport;9.77610766770033e-12!GO:0005524;ATP binding;1.92770089155404e-11!GO:0006323;DNA packaging;2.19973268054216e-11!GO:0051169;nuclear transport;2.48309261377863e-11!GO:0008219;cell death;2.58267312862685e-11!GO:0016265;death;2.58267312862685e-11!GO:0050794;regulation of cellular process;3.59243855062135e-11!GO:0032559;adenyl ribonucleotide binding;4.24453559274498e-11!GO:0048519;negative regulation of biological process;4.45865951406608e-11!GO:0016604;nuclear body;6.56177216178231e-11!GO:0042254;ribosome biogenesis and assembly;6.69159999193004e-11!GO:0006732;coenzyme metabolic process;6.73774696238119e-11!GO:0051301;cell division;6.76224525048882e-11!GO:0006281;DNA repair;7.0667006149955e-11!GO:0000074;regulation of progression through cell cycle;7.60604084326601e-11!GO:0005793;ER-Golgi intermediate compartment;7.73201868480212e-11!GO:0051726;regulation of cell cycle;7.90334157256687e-11!GO:0009055;electron carrier activity;8.87068686986685e-11!GO:0003743;translation initiation factor activity;1.48826702845675e-10!GO:0030554;adenyl nucleotide binding;1.89221113535357e-10!GO:0006413;translational initiation;2.26639919639937e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.29356837063803e-10!GO:0006446;regulation of translational initiation;4.40221277750979e-10!GO:0005789;endoplasmic reticulum membrane;5.43216526316665e-10!GO:0005643;nuclear pore;7.16811642872721e-10!GO:0006461;protein complex assembly;7.45716249079087e-10!GO:0008565;protein transporter activity;1.04945974083492e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.14557721410893e-09!GO:0065004;protein-DNA complex assembly;2.15535849847018e-09!GO:0003712;transcription cofactor activity;2.18793087012197e-09!GO:0000279;M phase;2.21265992268441e-09!GO:0008639;small protein conjugating enzyme activity;2.30022254925879e-09!GO:0006260;DNA replication;2.45378617124805e-09!GO:0016607;nuclear speck;3.11352406982369e-09!GO:0004842;ubiquitin-protein ligase activity;3.55968342048139e-09!GO:0017038;protein import;3.55968342048139e-09!GO:0006366;transcription from RNA polymerase II promoter;3.83853546890337e-09!GO:0009719;response to endogenous stimulus;4.80460849174851e-09!GO:0009259;ribonucleotide metabolic process;4.85939067427985e-09!GO:0019787;small conjugating protein ligase activity;5.12701292401391e-09!GO:0050789;regulation of biological process;5.29700711274826e-09!GO:0006163;purine nucleotide metabolic process;5.98640824497248e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.06391530926615e-09!GO:0051246;regulation of protein metabolic process;6.26587930713302e-09!GO:0065002;intracellular protein transport across a membrane;6.3464456180675e-09!GO:0048475;coated membrane;7.27341605389578e-09!GO:0030117;membrane coat;7.27341605389578e-09!GO:0006333;chromatin assembly or disassembly;7.93426619894545e-09!GO:0030120;vesicle coat;8.75183712022953e-09!GO:0030662;coated vesicle membrane;8.75183712022953e-09!GO:0006403;RNA localization;9.35645495164391e-09!GO:0015630;microtubule cytoskeleton;1.05733719564032e-08!GO:0009060;aerobic respiration;1.08861640629285e-08!GO:0000785;chromatin;1.25197767563568e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.34970900460365e-08!GO:0050657;nucleic acid transport;1.34970900460365e-08!GO:0051236;establishment of RNA localization;1.34970900460365e-08!GO:0050658;RNA transport;1.34970900460365e-08!GO:0006164;purine nucleotide biosynthetic process;1.48008918280938e-08!GO:0006399;tRNA metabolic process;2.08378576654155e-08!GO:0004386;helicase activity;2.48007408179318e-08!GO:0009150;purine ribonucleotide metabolic process;2.61753077334674e-08!GO:0043067;regulation of programmed cell death;4.337660333961e-08!GO:0003924;GTPase activity;4.39873736990933e-08!GO:0042623;ATPase activity, coupled;4.51340586700576e-08!GO:0009260;ribonucleotide biosynthetic process;4.8869191231824e-08!GO:0042981;regulation of apoptosis;5.0215674317938e-08!GO:0045333;cellular respiration;5.35901103294039e-08!GO:0006888;ER to Golgi vesicle-mediated transport;5.56498985686215e-08!GO:0030532;small nuclear ribonucleoprotein complex;5.65642503453706e-08!GO:0016887;ATPase activity;6.22060349544342e-08!GO:0016881;acid-amino acid ligase activity;6.31158431751342e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.75365480026616e-08!GO:0006793;phosphorus metabolic process;9.21662866575176e-08!GO:0006796;phosphate metabolic process;9.21662866575176e-08!GO:0043566;structure-specific DNA binding;1.03222831600653e-07!GO:0031324;negative regulation of cellular metabolic process;1.1278790298286e-07!GO:0005768;endosome;1.17591746428992e-07!GO:0009056;catabolic process;1.38246727910375e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.49481992345133e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.49481992345133e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.49481992345133e-07!GO:0007010;cytoskeleton organization and biogenesis;1.49646414365406e-07!GO:0015986;ATP synthesis coupled proton transport;1.54500561577989e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.54500561577989e-07!GO:0046930;pore complex;1.72243765082445e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.60218064979077e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.74729613392196e-07!GO:0043038;amino acid activation;2.75478559262461e-07!GO:0006418;tRNA aminoacylation for protein translation;2.75478559262461e-07!GO:0043039;tRNA aminoacylation;2.75478559262461e-07!GO:0005667;transcription factor complex;2.92538575829765e-07!GO:0006334;nucleosome assembly;2.93758559270706e-07!GO:0043069;negative regulation of programmed cell death;3.12315595611892e-07!GO:0016568;chromatin modification;3.44444080758602e-07!GO:0005788;endoplasmic reticulum lumen;3.68279087945139e-07!GO:0044431;Golgi apparatus part;3.73361409346246e-07!GO:0009141;nucleoside triphosphate metabolic process;3.90171100670814e-07!GO:0006364;rRNA processing;4.3542611770677e-07!GO:0051188;cofactor biosynthetic process;4.36222367440195e-07!GO:0019829;cation-transporting ATPase activity;4.38804929890942e-07!GO:0006099;tricarboxylic acid cycle;4.43171300761075e-07!GO:0046356;acetyl-CoA catabolic process;4.43171300761075e-07!GO:0009199;ribonucleoside triphosphate metabolic process;4.65395568878013e-07!GO:0031988;membrane-bound vesicle;4.67349508943023e-07!GO:0008026;ATP-dependent helicase activity;4.73380025111686e-07!GO:0007005;mitochondrion organization and biogenesis;4.91203981794146e-07!GO:0051028;mRNA transport;5.05501283856514e-07!GO:0009892;negative regulation of metabolic process;5.11693958443958e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.17215960830422e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.17215960830422e-07!GO:0016023;cytoplasmic membrane-bound vesicle;5.97900611730032e-07!GO:0003697;single-stranded DNA binding;6.34419309306398e-07!GO:0043066;negative regulation of apoptosis;6.46357943896525e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.55325802130995e-07!GO:0009144;purine nucleoside triphosphate metabolic process;6.55325802130995e-07!GO:0031252;leading edge;6.75205350050322e-07!GO:0045786;negative regulation of progression through cell cycle;6.77316922777125e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.3552673916607e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.3552673916607e-07!GO:0016072;rRNA metabolic process;9.67377627776335e-07!GO:0019899;enzyme binding;1.14664460128127e-06!GO:0051325;interphase;1.24015428074803e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.27504415225476e-06!GO:0016310;phosphorylation;1.28399105269986e-06!GO:0006084;acetyl-CoA metabolic process;1.28399105269986e-06!GO:0051170;nuclear import;1.29372278304987e-06!GO:0031497;chromatin assembly;1.30434638245584e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.51717177665956e-06!GO:0051329;interphase of mitotic cell cycle;1.62877193460436e-06!GO:0032446;protein modification by small protein conjugation;1.72880891294134e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.75386434901082e-06!GO:0006606;protein import into nucleus;1.84479700582928e-06!GO:0006916;anti-apoptosis;1.84868734244663e-06!GO:0030036;actin cytoskeleton organization and biogenesis;1.87018563031087e-06!GO:0005525;GTP binding;2.12005938418775e-06!GO:0045259;proton-transporting ATP synthase complex;2.31788905656247e-06!GO:0016853;isomerase activity;2.32594737404511e-06!GO:0005798;Golgi-associated vesicle;2.36515476109365e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.82752321847355e-06!GO:0006754;ATP biosynthetic process;2.97950150331923e-06!GO:0006753;nucleoside phosphate metabolic process;2.97950150331923e-06!GO:0016567;protein ubiquitination;3.00484483668046e-06!GO:0016564;transcription repressor activity;3.08880956442488e-06!GO:0046034;ATP metabolic process;3.25387368024475e-06!GO:0009117;nucleotide metabolic process;3.31186636109308e-06!GO:0031982;vesicle;4.08276949113406e-06!GO:0031410;cytoplasmic vesicle;5.48586998666627e-06!GO:0009109;coenzyme catabolic process;5.60160867337707e-06!GO:0016481;negative regulation of transcription;5.79834838718215e-06!GO:0043623;cellular protein complex assembly;5.82068256380451e-06!GO:0016740;transferase activity;6.6471582847103e-06!GO:0006613;cotranslational protein targeting to membrane;7.95089749637139e-06!GO:0000245;spliceosome assembly;8.15042017683589e-06!GO:0008092;cytoskeletal protein binding;8.688272833836e-06!GO:0015078;hydrogen ion transmembrane transporter activity;8.87170716714307e-06!GO:0016126;sterol biosynthetic process;9.07972839534138e-06!GO:0004298;threonine endopeptidase activity;9.27953673141717e-06!GO:0005762;mitochondrial large ribosomal subunit;9.9266680553463e-06!GO:0000315;organellar large ribosomal subunit;9.9266680553463e-06!GO:0000151;ubiquitin ligase complex;1.06696652908868e-05!GO:0003714;transcription corepressor activity;1.09354788595698e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.48293578553759e-05!GO:0044440;endosomal part;1.53503787397391e-05!GO:0010008;endosome membrane;1.53503787397391e-05!GO:0009108;coenzyme biosynthetic process;1.62350355454778e-05!GO:0006752;group transfer coenzyme metabolic process;1.62350355454778e-05!GO:0016859;cis-trans isomerase activity;1.63348547965739e-05!GO:0030029;actin filament-based process;1.76596830944223e-05!GO:0032561;guanyl ribonucleotide binding;1.87595067924049e-05!GO:0019001;guanyl nucleotide binding;1.87595067924049e-05!GO:0051187;cofactor catabolic process;1.87595067924049e-05!GO:0005905;coated pit;2.10849581830033e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.1871055744191e-05!GO:0006695;cholesterol biosynthetic process;2.28348782600668e-05!GO:0007264;small GTPase mediated signal transduction;2.4489699184653e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.02499921498114e-05!GO:0000139;Golgi membrane;3.03717481138946e-05!GO:0048471;perinuclear region of cytoplasm;3.0956796555771e-05!GO:0030133;transport vesicle;3.11223564774446e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.11223564774446e-05!GO:0016563;transcription activator activity;3.21780860931029e-05!GO:0005819;spindle;3.27117087738673e-05!GO:0008361;regulation of cell size;3.39890562367579e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.51519881849046e-05!GO:0008654;phospholipid biosynthetic process;3.92584333315734e-05!GO:0005813;centrosome;3.9828550732255e-05!GO:0016049;cell growth;4.55534355923965e-05!GO:0001558;regulation of cell growth;5.5247887324073e-05!GO:0051427;hormone receptor binding;6.24532305322122e-05!GO:0019222;regulation of metabolic process;6.71262158263254e-05!GO:0030867;rough endoplasmic reticulum membrane;7.18410650519314e-05!GO:0015980;energy derivation by oxidation of organic compounds;7.46227609601613e-05!GO:0005770;late endosome;7.87398541713027e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;8.85798607982063e-05!GO:0003713;transcription coactivator activity;9.02495364950687e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.94321202652956e-05!GO:0003724;RNA helicase activity;0.000100269251495805!GO:0005815;microtubule organizing center;0.000102782529168819!GO:0045454;cell redox homeostasis;0.000109066759999677!GO:0043021;ribonucleoprotein binding;0.000118086247425876!GO:0035257;nuclear hormone receptor binding;0.000132200544101257!GO:0065007;biological regulation;0.00013360564107822!GO:0030118;clathrin coat;0.000136233084456243!GO:0003729;mRNA binding;0.000204457783902373!GO:0007243;protein kinase cascade;0.00022036900153273!GO:0033116;ER-Golgi intermediate compartment membrane;0.000226011212164804!GO:0016787;hydrolase activity;0.000241621572147973!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00024521826537514!GO:0051168;nuclear export;0.000247372400850226!GO:0016363;nuclear matrix;0.000260922869892385!GO:0005773;vacuole;0.000268104330200872!GO:0016044;membrane organization and biogenesis;0.000282451939835587!GO:0048468;cell development;0.000301412256531656!GO:0006612;protein targeting to membrane;0.000306945447661042!GO:0005048;signal sequence binding;0.000313949957426935!GO:0005791;rough endoplasmic reticulum;0.000319985819822219!GO:0005885;Arp2/3 protein complex;0.000322040834120964!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000332079743088794!GO:0006414;translational elongation;0.000334184336643331!GO:0000314;organellar small ribosomal subunit;0.000334184336643331!GO:0005763;mitochondrial small ribosomal subunit;0.000334184336643331!GO:0030658;transport vesicle membrane;0.000342241223507131!GO:0016779;nucleotidyltransferase activity;0.000346073280200691!GO:0007051;spindle organization and biogenesis;0.000366522921667766!GO:0005874;microtubule;0.000368390010910127!GO:0008250;oligosaccharyl transferase complex;0.000392777230995651!GO:0000075;cell cycle checkpoint;0.000438786777869266!GO:0005769;early endosome;0.000451375246239366!GO:0001726;ruffle;0.000471242285166939!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000514143989937862!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000515002810924411!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000595712462284631!GO:0048522;positive regulation of cellular process;0.000625823272486391!GO:0004576;oligosaccharyl transferase activity;0.000640242476048707!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000677184017246841!GO:0006626;protein targeting to mitochondrion;0.000722051239774668!GO:0006402;mRNA catabolic process;0.000749189984182994!GO:0051920;peroxiredoxin activity;0.000762305905328247!GO:0003690;double-stranded DNA binding;0.000767000224564846!GO:0065009;regulation of a molecular function;0.000804271095985202!GO:0006261;DNA-dependent DNA replication;0.000830058306655433!GO:0016491;oxidoreductase activity;0.000855529196244364!GO:0043681;protein import into mitochondrion;0.000961861093305062!GO:0006839;mitochondrial transport;0.00107312490140343!GO:0045892;negative regulation of transcription, DNA-dependent;0.00108025103121915!GO:0030660;Golgi-associated vesicle membrane;0.00113223781543066!GO:0031968;organelle outer membrane;0.00115680519725384!GO:0003899;DNA-directed RNA polymerase activity;0.00117398608992177!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00117820453159524!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00117820453159524!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00117820453159524!GO:0008610;lipid biosynthetic process;0.00125591351206217!GO:0007050;cell cycle arrest;0.00129321903878815!GO:0000775;chromosome, pericentric region;0.00129321903878815!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00129662080549045!GO:0019867;outer membrane;0.00130661491516626!GO:0019843;rRNA binding;0.00133311311795209!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00133502621297784!GO:0000059;protein import into nucleus, docking;0.00136153725322979!GO:0051252;regulation of RNA metabolic process;0.00137983070956373!GO:0051789;response to protein stimulus;0.00142569289597114!GO:0006986;response to unfolded protein;0.00142569289597114!GO:0000323;lytic vacuole;0.00143783772204639!GO:0005764;lysosome;0.00143783772204639!GO:0033673;negative regulation of kinase activity;0.00145212576993889!GO:0006469;negative regulation of protein kinase activity;0.00145212576993889!GO:0030132;clathrin coat of coated pit;0.00152021422944274!GO:0042802;identical protein binding;0.00152350000619565!GO:0007265;Ras protein signal transduction;0.00155212708281502!GO:0006891;intra-Golgi vesicle-mediated transport;0.00158475248905874!GO:0018196;peptidyl-asparagine modification;0.00158838112054035!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00158838112054035!GO:0030663;COPI coated vesicle membrane;0.00159057330051482!GO:0030126;COPI vesicle coat;0.00159057330051482!GO:0030119;AP-type membrane coat adaptor complex;0.00160740211439669!GO:0008186;RNA-dependent ATPase activity;0.00172907887749303!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00178213914765413!GO:0005741;mitochondrial outer membrane;0.00179709391495555!GO:0030027;lamellipodium;0.00181780360865612!GO:0048500;signal recognition particle;0.00197789395605359!GO:0043488;regulation of mRNA stability;0.00203952367014605!GO:0043487;regulation of RNA stability;0.00203952367014605!GO:0051348;negative regulation of transferase activity;0.00219473253850661!GO:0045893;positive regulation of transcription, DNA-dependent;0.00225791270339089!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00229205604911827!GO:0030131;clathrin adaptor complex;0.00240779357565097!GO:0003682;chromatin binding;0.00245457260161652!GO:0040008;regulation of growth;0.00256231030192648!GO:0008047;enzyme activator activity;0.00256231030192648!GO:0009165;nucleotide biosynthetic process;0.00259566405721476!GO:0008286;insulin receptor signaling pathway;0.002694063307909!GO:0006383;transcription from RNA polymerase III promoter;0.00285358243074639!GO:0008094;DNA-dependent ATPase activity;0.00288512872761438!GO:0030125;clathrin vesicle coat;0.00288512872761438!GO:0030665;clathrin coated vesicle membrane;0.00288512872761438!GO:0007093;mitotic cell cycle checkpoint;0.0028978036714319!GO:0046474;glycerophospholipid biosynthetic process;0.0030986154264048!GO:0000902;cell morphogenesis;0.00318614453404056!GO:0032989;cellular structure morphogenesis;0.00318614453404056!GO:0016197;endosome transport;0.00324400898827448!GO:0000786;nucleosome;0.00324667950138732!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00324771402728467!GO:0003779;actin binding;0.00324860762984879!GO:0030134;ER to Golgi transport vesicle;0.00326344618854314!GO:0030137;COPI-coated vesicle;0.00336007105662104!GO:0000776;kinetochore;0.00342680991764141!GO:0000082;G1/S transition of mitotic cell cycle;0.0035026276273975!GO:0008139;nuclear localization sequence binding;0.00356965671162109!GO:0006401;RNA catabolic process;0.00359369778413603!GO:0006417;regulation of translation;0.00371803204328519!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00384275775030628!GO:0045045;secretory pathway;0.00395406661132705!GO:0031124;mRNA 3'-end processing;0.00399439575612623!GO:0005637;nuclear inner membrane;0.00416367903329639!GO:0003684;damaged DNA binding;0.00424076378851426!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00441105199277168!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00441105199277168!GO:0030127;COPII vesicle coat;0.00441593691615297!GO:0012507;ER to Golgi transport vesicle membrane;0.00441593691615297!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00445322614683427!GO:0045047;protein targeting to ER;0.00445322614683427!GO:0015631;tubulin binding;0.00446260358835937!GO:0045941;positive regulation of transcription;0.00446980478144127!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00451182751537048!GO:0004004;ATP-dependent RNA helicase activity;0.00458139721435401!GO:0046467;membrane lipid biosynthetic process;0.0046667495554204!GO:0007006;mitochondrial membrane organization and biogenesis;0.00473472664097845!GO:0007088;regulation of mitosis;0.00487740859536567!GO:0017166;vinculin binding;0.00499626789387172!GO:0043284;biopolymer biosynthetic process;0.00502435875663603!GO:0005684;U2-dependent spliceosome;0.00510943237799574!GO:0008312;7S RNA binding;0.00511470862479382!GO:0003678;DNA helicase activity;0.00513960299986525!GO:0051128;regulation of cellular component organization and biogenesis;0.00514607863256875!GO:0051087;chaperone binding;0.00525685855724628!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00532479829331949!GO:0030176;integral to endoplasmic reticulum membrane;0.00543333096314924!GO:0004674;protein serine/threonine kinase activity;0.00549742375612532!GO:0005083;small GTPase regulator activity;0.00549742375612532!GO:0006595;polyamine metabolic process;0.00570450855140103!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00601368904774134!GO:0048487;beta-tubulin binding;0.00610078327739252!GO:0005869;dynactin complex;0.00623322291272685!GO:0030659;cytoplasmic vesicle membrane;0.00623322291272685!GO:0006352;transcription initiation;0.00633613642293653!GO:0031323;regulation of cellular metabolic process;0.00652187709665207!GO:0030880;RNA polymerase complex;0.00666564616952462!GO:0006740;NADPH regeneration;0.00667561308297962!GO:0006098;pentose-phosphate shunt;0.00667561308297962!GO:0031072;heat shock protein binding;0.00684096162258454!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00720669896993336!GO:0005657;replication fork;0.00736574687243069!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00737241919425641!GO:0008180;signalosome;0.00737241919425641!GO:0007017;microtubule-based process;0.00755551722804689!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00755731851633151!GO:0009966;regulation of signal transduction;0.00770962800286436!GO:0030521;androgen receptor signaling pathway;0.00783089994956629!GO:0044433;cytoplasmic vesicle part;0.0082864116230149!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00888344518806598!GO:0035258;steroid hormone receptor binding;0.0090728694930187!GO:0040029;regulation of gene expression, epigenetic;0.0091496431677998!GO:0012506;vesicle membrane;0.00968442606054722!GO:0006650;glycerophospholipid metabolic process;0.00990937443674681!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0102207342565107!GO:0007266;Rho protein signal transduction;0.0102436700942009!GO:0044262;cellular carbohydrate metabolic process;0.0105622947459846!GO:0046489;phosphoinositide biosynthetic process;0.0108105892757441!GO:0031625;ubiquitin protein ligase binding;0.0108702239789693!GO:0003711;transcription elongation regulator activity;0.0109572878347596!GO:0007052;mitotic spindle organization and biogenesis;0.0110530480428096!GO:0008033;tRNA processing;0.0112134574662272!GO:0000086;G2/M transition of mitotic cell cycle;0.0114546935124296!GO:0006091;generation of precursor metabolites and energy;0.011472404029791!GO:0043022;ribosome binding;0.011734523500213!GO:0005096;GTPase activator activity;0.0120132876422928!GO:0006302;double-strand break repair;0.0120192196845747!GO:0016584;nucleosome positioning;0.0124000146878129!GO:0044452;nucleolar part;0.0131352278360956!GO:0005832;chaperonin-containing T-complex;0.0132416439786075!GO:0005862;muscle thin filament tropomyosin;0.0134142593666198!GO:0016408;C-acyltransferase activity;0.0134448964995929!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0136722776983284!GO:0000428;DNA-directed RNA polymerase complex;0.0136722776983284!GO:0008022;protein C-terminus binding;0.014262286682048!GO:0016272;prefoldin complex;0.0145035888895753!GO:0006509;membrane protein ectodomain proteolysis;0.0145035888895753!GO:0033619;membrane protein proteolysis;0.0145035888895753!GO:0019798;procollagen-proline dioxygenase activity;0.0145583431693107!GO:0051101;regulation of DNA binding;0.0146299327702247!GO:0050790;regulation of catalytic activity;0.0148057434208186!GO:0051052;regulation of DNA metabolic process;0.0151720817346067!GO:0000118;histone deacetylase complex;0.0153603682350849!GO:0006405;RNA export from nucleus;0.0157805783535009!GO:0030695;GTPase regulator activity;0.015805258532967!GO:0006611;protein export from nucleus;0.0161066551210239!GO:0051287;NAD binding;0.0161663780114681!GO:0016251;general RNA polymerase II transcription factor activity;0.0161890307612388!GO:0000792;heterochromatin;0.0161944338962566!GO:0006720;isoprenoid metabolic process;0.0166472196595179!GO:0030384;phosphoinositide metabolic process;0.0171368458184738!GO:0009889;regulation of biosynthetic process;0.0171554533119334!GO:0031326;regulation of cellular biosynthetic process;0.0174142534962214!GO:0006310;DNA recombination;0.0174142534962214!GO:0000339;RNA cap binding;0.0177743132704676!GO:0006144;purine base metabolic process;0.0181174117396251!GO:0043086;negative regulation of catalytic activity;0.0181968026551703!GO:0031543;peptidyl-proline dioxygenase activity;0.0182330366148828!GO:0000209;protein polyubiquitination;0.0182330366148828!GO:0045936;negative regulation of phosphate metabolic process;0.0182735516974639!GO:0016311;dephosphorylation;0.01834312478883!GO:0006607;NLS-bearing substrate import into nucleus;0.01834312478883!GO:0003746;translation elongation factor activity;0.01834312478883!GO:0006892;post-Golgi vesicle-mediated transport;0.0185178180165209!GO:0031575;G1/S transition checkpoint;0.018964902696006!GO:0051338;regulation of transferase activity;0.0196503189675165!GO:0048518;positive regulation of biological process;0.0197691673404606!GO:0031901;early endosome membrane;0.0198091830234588!GO:0043414;biopolymer methylation;0.0199560404491519!GO:0045792;negative regulation of cell size;0.0202473978231875!GO:0032940;secretion by cell;0.0213283664517021!GO:0031529;ruffle organization and biogenesis;0.0214886710513582!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0215256734475708!GO:0015399;primary active transmembrane transporter activity;0.0215256734475708!GO:0006338;chromatin remodeling;0.0215449132930678!GO:0005876;spindle microtubule;0.0217911668530115!GO:0016860;intramolecular oxidoreductase activity;0.0218710123799958!GO:0051539;4 iron, 4 sulfur cluster binding;0.0224103885061662!GO:0050750;low-density lipoprotein receptor binding;0.0224572076375708!GO:0050811;GABA receptor binding;0.022512484253673!GO:0030308;negative regulation of cell growth;0.022512484253673!GO:0000049;tRNA binding;0.0226601217437862!GO:0051098;regulation of binding;0.022747631171088!GO:0031123;RNA 3'-end processing;0.022747631171088!GO:0006672;ceramide metabolic process;0.0228715524082508!GO:0006520;amino acid metabolic process;0.023037324485454!GO:0005669;transcription factor TFIID complex;0.0232439015180132!GO:0051059;NF-kappaB binding;0.0233249701426433!GO:0004860;protein kinase inhibitor activity;0.0234810685498859!GO:0032906;transforming growth factor-beta2 production;0.0235286850200256!GO:0032909;regulation of transforming growth factor-beta2 production;0.0235286850200256!GO:0043065;positive regulation of apoptosis;0.0237003119941187!GO:0016741;transferase activity, transferring one-carbon groups;0.0246290214252863!GO:0008287;protein serine/threonine phosphatase complex;0.0246886580073663!GO:0006897;endocytosis;0.0247425525916828!GO:0010324;membrane invagination;0.0247425525916828!GO:0046822;regulation of nucleocytoplasmic transport;0.0247425525916828!GO:0008632;apoptotic program;0.0248513556122554!GO:0043130;ubiquitin binding;0.02563949913144!GO:0032182;small conjugating protein binding;0.02563949913144!GO:0006739;NADP metabolic process;0.0257435425518815!GO:0008168;methyltransferase activity;0.0261279309782299!GO:0043068;positive regulation of programmed cell death;0.0262096721933481!GO:0004721;phosphoprotein phosphatase activity;0.0264016044894929!GO:0005856;cytoskeleton;0.0264121547616025!GO:0031902;late endosome membrane;0.0272370545580897!GO:0009112;nucleobase metabolic process;0.0278569929392275!GO:0006350;transcription;0.0278569929392275!GO:0015992;proton transport;0.0279108835560237!GO:0006643;membrane lipid metabolic process;0.0280658766771761!GO:0008154;actin polymerization and/or depolymerization;0.0280756713486511!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0280931648011681!GO:0007242;intracellular signaling cascade;0.0282269636524948!GO:0045334;clathrin-coated endocytic vesicle;0.0288025070017289!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0290271255449638!GO:0006818;hydrogen transport;0.0290271255449638!GO:0004003;ATP-dependent DNA helicase activity;0.0292395518431337!GO:0032508;DNA duplex unwinding;0.0293880500021811!GO:0032392;DNA geometric change;0.0293880500021811!GO:0043549;regulation of kinase activity;0.02962305611653!GO:0046519;sphingoid metabolic process;0.0296780931262151!GO:0030032;lamellipodium biogenesis;0.0296780931262151!GO:0051540;metal cluster binding;0.0296780931262151!GO:0051536;iron-sulfur cluster binding;0.0296780931262151!GO:0030140;trans-Golgi network transport vesicle;0.0300336231106001!GO:0031970;organelle envelope lumen;0.0300359475471178!GO:0003756;protein disulfide isomerase activity;0.0301502479739056!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0301502479739056!GO:0032259;methylation;0.0302424185014506!GO:0007569;cell aging;0.0303906407227457!GO:0006376;mRNA splice site selection;0.030838877795915!GO:0000389;nuclear mRNA 3'-splice site recognition;0.030838877795915!GO:0009116;nucleoside metabolic process;0.030838877795915!GO:0007030;Golgi organization and biogenesis;0.030838877795915!GO:0016125;sterol metabolic process;0.0314629238867938!GO:0010468;regulation of gene expression;0.0323462039695537!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0332096268394375!GO:0006289;nucleotide-excision repair;0.0332096268394375!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0340565280915605!GO:0015002;heme-copper terminal oxidase activity;0.0340565280915605!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0340565280915605!GO:0004129;cytochrome-c oxidase activity;0.0340565280915605!GO:0008097;5S rRNA binding;0.0343435986350521!GO:0043407;negative regulation of MAP kinase activity;0.0344811288236126!GO:0006378;mRNA polyadenylation;0.0346226544992909!GO:0005784;translocon complex;0.0347772482681398!GO:0050681;androgen receptor binding;0.0347772482681398!GO:0018193;peptidyl-amino acid modification;0.0349514694175196!GO:0006284;base-excision repair;0.0351272228851399!GO:0031371;ubiquitin conjugating enzyme complex;0.035572624141032!GO:0030496;midbody;0.0357858551023447!GO:0007059;chromosome segregation;0.0359173950845516!GO:0007021;tubulin folding;0.0363875487608378!GO:0006979;response to oxidative stress;0.0366188319685242!GO:0008538;proteasome activator activity;0.0372951455315216!GO:0019902;phosphatase binding;0.0373849073419436!GO:0042393;histone binding;0.037577812427497!GO:0016791;phosphoric monoester hydrolase activity;0.0379769857253353!GO:0046966;thyroid hormone receptor binding;0.0384234495569149!GO:0008243;plasminogen activator activity;0.0385800825703744!GO:0019752;carboxylic acid metabolic process;0.0388790278410476!GO:0009967;positive regulation of signal transduction;0.0389794377854367!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.039016232461553!GO:0030100;regulation of endocytosis;0.0392784080597862!GO:0006950;response to stress;0.039586117972907!GO:0030128;clathrin coat of endocytic vesicle;0.0398147374492644!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0398147374492644!GO:0030122;AP-2 adaptor complex;0.0398147374492644!GO:0006082;organic acid metabolic process;0.0400342159489816!GO:0009081;branched chain family amino acid metabolic process;0.0408764812054356!GO:0008143;poly(A) binding;0.0421849143473751!GO:0006007;glucose catabolic process;0.0421849143473751!GO:0043034;costamere;0.0430678192833324!GO:0043624;cellular protein complex disassembly;0.0431016212727763!GO:0005938;cell cortex;0.0431635384166009!GO:0022415;viral reproductive process;0.0431970273414187!GO:0005758;mitochondrial intermembrane space;0.0432331672266438!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0435731578732703!GO:0003702;RNA polymerase II transcription factor activity;0.0435909048933598!GO:0006779;porphyrin biosynthetic process;0.0435909048933598!GO:0033014;tetrapyrrole biosynthetic process;0.0435909048933598!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0442648733849485!GO:0004177;aminopeptidase activity;0.0446602743339285!GO:0042326;negative regulation of phosphorylation;0.0448413453194956!GO:0032984;macromolecular complex disassembly;0.0451977290780906!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0451977290780906!GO:0030031;cell projection biogenesis;0.0454790721141933!GO:0006268;DNA unwinding during replication;0.0454943400351228!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.045746929094967!GO:0050178;phenylpyruvate tautomerase activity;0.0458812129267929!GO:0030911;TPR domain binding;0.0462327281811037!GO:0000096;sulfur amino acid metabolic process;0.0462327281811037!GO:0007346;regulation of progression through mitotic cell cycle;0.0463447197389474!GO:0006644;phospholipid metabolic process;0.046412079680835!GO:0051272;positive regulation of cell motility;0.046412079680835!GO:0040017;positive regulation of locomotion;0.046412079680835!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0466946733220902!GO:0043495;protein anchor;0.047600583600396!GO:0019904;protein domain specific binding;0.0478664020533596!GO:0045859;regulation of protein kinase activity;0.0478885659407665!GO:0006275;regulation of DNA replication;0.0479628541919883!GO:0008629;induction of apoptosis by intracellular signals;0.0482583624356709!GO:0035267;NuA4 histone acetyltransferase complex;0.048281652806055!GO:0030518;steroid hormone receptor signaling pathway;0.0485410644928981!GO:0016585;chromatin remodeling complex;0.0493259346747067!GO:0004722;protein serine/threonine phosphatase activity;0.0497349716180407 | |||
|sample_id=11399 | |sample_id=11399 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=eye | |sample_tissue=eye | ||
|top_motifs=PAX1,9:2.39854036695;NKX2-1,4:1.81247492911;ZIC1..3:1.69868676191;T:1.69628347995;ZNF384:1.68120944324;SOX17:1.41142398653;SOX2:1.2274253071;CDC5L:1.19820166598;MZF1:1.16063511151;GFI1:1.12890050348;EGR1..3:1.12747053299;NR3C1:1.11823815274;EVI1:1.04171756918;NKX2-3_NKX2-5:0.987449065117;TEAD1:0.986567359373;MAZ:0.971958690558;NKX3-1:0.970542629431;EBF1:0.877850125978;TOPORS:0.873139074789;NANOG:0.863790156588;NR6A1:0.854951522027;TFAP2{A,C}:0.851061723189;FOXP1:0.807150794923;HSF1,2:0.80675870692;GTF2A1,2:0.793143513239;SRF:0.791096311782;ZFP161:0.791074773264;PAX4:0.789583834166;TFDP1:0.78937646214;SP1:0.770985749395;ALX1:0.767263337494;NFY{A,B,C}:0.766121495646;PATZ1:0.755035626736;NKX6-1,2:0.730526080747;UFEwm:0.706142050339;HOX{A4,D4}:0.705239833509;HMGA1,2:0.691477328137;KLF4:0.690149034099;CDX1,2,4:0.661003185092;MTE{core}:0.618944716642;TFAP4:0.611323107868;XCPE1{core}:0.598772957638;LHX3,4:0.577229012319;TLX1..3_NFIC{dimer}:0.572232383653;TBX4,5:0.563083975299;POU1F1:0.562024877607;PAX5:0.548086519097;RXR{A,B,G}:0.542959147035;GATA4:0.525929603469;HIC1:0.505702212467;AIRE:0.496979996418;GFI1B:0.474757190642;GZF1:0.472325984183;SOX{8,9,10}:0.470693927015;TFCP2:0.468807861925;ALX4:0.466284813849;TFAP2B:0.45834922278;ONECUT1,2:0.443670566793;HOXA9_MEIS1:0.435776342358;E2F1..5:0.434129269946;PRDM1:0.41562226889;ZBTB16:0.412511698817;NRF1:0.38578630303;OCT4_SOX2{dimer}:0.385014133554;POU5F1:0.378392148674;GTF2I:0.360334479595;VSX1,2:0.357302165802;EN1,2:0.346137223137;HOX{A5,B5}:0.328150817953;ELK1,4_GABP{A,B1}:0.311709549872;IKZF2:0.310945372805;ZNF143:0.297286345368;NHLH1,2:0.28414863142;STAT1,3:0.283985855545;TAL1_TCF{3,4,12}:0.279469497968;NFATC1..3:0.276019552821;LEF1_TCF7_TCF7L1,2:0.273928567999;PAX8:0.27047127162;GLI1..3:0.257165729603;FOXM1:0.254237943516;RBPJ:0.22119963359;HNF4A_NR2F1,2:0.214571811239;MYFfamily:0.185035885053;FOXD3:0.184259951513;BREu{core}:0.18413682219;CRX:0.183277944162;MTF1:0.178185301217;POU3F1..4:0.177157664163;DBP:0.173202714299;MYOD1:0.172032714547;TBP:0.166736484599;PITX1..3:0.164346108041;RFX1:0.161351455279;IKZF1:0.153669147929;ZBTB6:0.141031536984;MED-1{core}:0.121366007283;PBX1:0.096855162258;RREB1:0.087525490962;FOSL2:0.0868794406613;ADNP_IRX_SIX_ZHX:0.0856253862067;POU6F1:0.070349046621;NKX3-2:0.0598187571774;ZNF148:0.0588796975541;NANOG{mouse}:0.0434698128788;RUNX1..3:0.0177787025732;MYBL2:0.00122360595904;HOX{A6,A7,B6,B7}:-0.0275244931744;MYB:-0.0547049556886;FOX{I1,J2}:-0.0634775215464;AHR_ARNT_ARNT2:-0.0643899789147;REST:-0.0659670284567;BACH2:-0.0694535419039;YY1:-0.0727179010475;ESR1:-0.0742291382562;PRRX1,2:-0.0847094947097;JUN:-0.110306274824;RFX2..5_RFXANK_RFXAP:-0.112545128491;POU2F1..3:-0.1271524939;XBP1:-0.149104969145;SMAD1..7,9:-0.154809802652;FOXP3:-0.162297763388;ZNF423:-0.167798009915;FOS_FOS{B,L1}_JUN{B,D}:-0.175661112429;FOXA2:-0.180166704282;GCM1,2:-0.183509597698;LMO2:-0.187572253614;HNF1A:-0.197146492209;ARID5B:-0.206074838022;TP53:-0.214884565297;ATF6:-0.222369642614;SPZ1:-0.223817319933;SNAI1..3:-0.230344626026;TGIF1:-0.237273334648;RXRA_VDR{dimer}:-0.243192811716;HMX1:-0.243622171925;NFE2L1:-0.256787334805;NFE2L2:-0.278724407289;ELF1,2,4:-0.279671858607;CUX2:-0.286807630185;NFE2:-0.315935636503;ESRRA:-0.31593796056;SOX5:-0.324431815899;ATF4:-0.330090204061;STAT2,4,6:-0.339479638602;ZEB1:-0.347801077874;MEF2{A,B,C,D}:-0.355167372975;EP300:-0.372101923577;AR:-0.385884403033;NFKB1_REL_RELA:-0.39314088177;PAX6:-0.402984826373;PAX3,7:-0.405380168776;SPI1:-0.407638234453;ATF2:-0.410856802225;IRF1,2:-0.417447948187;TLX2:-0.421169388855;HIF1A:-0.42840375229;RORA:-0.430810000495;STAT5{A,B}:-0.442131429368;CREB1:-0.449430463038;SPIB:-0.46304636847;FOX{D1,D2}:-0.478990987807;DMAP1_NCOR{1,2}_SMARC:-0.482734769574;FOXN1:-0.496122795015;FOXL1:-0.500430701069;BPTF:-0.500914339496;HLF:-0.501018730799;GATA6:-0.524679709476;FOXO1,3,4:-0.527560329068;TEF:-0.538372543259;ETS1,2:-0.543512389076;NR1H4:-0.544551803586;NFIX:-0.566792185741;IRF7:-0.583642455043;SREBF1,2:-0.634725772324;ATF5_CREB3:-0.644407416571;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.6559467869;PAX2:-0.656398348561;FOXQ1:-0.666050090356;bHLH_family:-0.693794695;NR5A1,2:-0.711825222893;CEBPA,B_DDIT3:-0.716925772625;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.761869734056;MAFB:-0.799956520454;NFIL3:-0.807287920663;NKX2-2,8:-0.840580501984;FOX{F1,F2,J1}:-0.92779777671;ZNF238:-0.98053778508;PDX1:-1.0097874921;PPARG:-1.12657831039;HAND1,2:-1.39108199833;HBP1_HMGB_SSRP1_UBTF:-1.40457682808;HES1:-1.6621366909 | |top_motifs=PAX1,9:2.39854036695;NKX2-1,4:1.81247492911;ZIC1..3:1.69868676191;T:1.69628347995;ZNF384:1.68120944324;SOX17:1.41142398653;SOX2:1.2274253071;CDC5L:1.19820166598;MZF1:1.16063511151;GFI1:1.12890050348;EGR1..3:1.12747053299;NR3C1:1.11823815274;EVI1:1.04171756918;NKX2-3_NKX2-5:0.987449065117;TEAD1:0.986567359373;MAZ:0.971958690558;NKX3-1:0.970542629431;EBF1:0.877850125978;TOPORS:0.873139074789;NANOG:0.863790156588;NR6A1:0.854951522027;TFAP2{A,C}:0.851061723189;FOXP1:0.807150794923;HSF1,2:0.80675870692;GTF2A1,2:0.793143513239;SRF:0.791096311782;ZFP161:0.791074773264;PAX4:0.789583834166;TFDP1:0.78937646214;SP1:0.770985749395;ALX1:0.767263337494;NFY{A,B,C}:0.766121495646;PATZ1:0.755035626736;NKX6-1,2:0.730526080747;UFEwm:0.706142050339;HOX{A4,D4}:0.705239833509;HMGA1,2:0.691477328137;KLF4:0.690149034099;CDX1,2,4:0.661003185092;MTE{core}:0.618944716642;TFAP4:0.611323107868;XCPE1{core}:0.598772957638;LHX3,4:0.577229012319;TLX1..3_NFIC{dimer}:0.572232383653;TBX4,5:0.563083975299;POU1F1:0.562024877607;PAX5:0.548086519097;RXR{A,B,G}:0.542959147035;GATA4:0.525929603469;HIC1:0.505702212467;AIRE:0.496979996418;GFI1B:0.474757190642;GZF1:0.472325984183;SOX{8,9,10}:0.470693927015;TFCP2:0.468807861925;ALX4:0.466284813849;TFAP2B:0.45834922278;ONECUT1,2:0.443670566793;HOXA9_MEIS1:0.435776342358;E2F1..5:0.434129269946;PRDM1:0.41562226889;ZBTB16:0.412511698817;NRF1:0.38578630303;OCT4_SOX2{dimer}:0.385014133554;POU5F1:0.378392148674;GTF2I:0.360334479595;VSX1,2:0.357302165802;EN1,2:0.346137223137;HOX{A5,B5}:0.328150817953;ELK1,4_GABP{A,B1}:0.311709549872;IKZF2:0.310945372805;ZNF143:0.297286345368;NHLH1,2:0.28414863142;STAT1,3:0.283985855545;TAL1_TCF{3,4,12}:0.279469497968;NFATC1..3:0.276019552821;LEF1_TCF7_TCF7L1,2:0.273928567999;PAX8:0.27047127162;GLI1..3:0.257165729603;FOXM1:0.254237943516;RBPJ:0.22119963359;HNF4A_NR2F1,2:0.214571811239;MYFfamily:0.185035885053;FOXD3:0.184259951513;BREu{core}:0.18413682219;CRX:0.183277944162;MTF1:0.178185301217;POU3F1..4:0.177157664163;DBP:0.173202714299;MYOD1:0.172032714547;TBP:0.166736484599;PITX1..3:0.164346108041;RFX1:0.161351455279;IKZF1:0.153669147929;ZBTB6:0.141031536984;MED-1{core}:0.121366007283;PBX1:0.096855162258;RREB1:0.087525490962;FOSL2:0.0868794406613;ADNP_IRX_SIX_ZHX:0.0856253862067;POU6F1:0.070349046621;NKX3-2:0.0598187571774;ZNF148:0.0588796975541;NANOG{mouse}:0.0434698128788;RUNX1..3:0.0177787025732;MYBL2:0.00122360595904;HOX{A6,A7,B6,B7}:-0.0275244931744;MYB:-0.0547049556886;FOX{I1,J2}:-0.0634775215464;AHR_ARNT_ARNT2:-0.0643899789147;REST:-0.0659670284567;BACH2:-0.0694535419039;YY1:-0.0727179010475;ESR1:-0.0742291382562;PRRX1,2:-0.0847094947097;JUN:-0.110306274824;RFX2..5_RFXANK_RFXAP:-0.112545128491;POU2F1..3:-0.1271524939;XBP1:-0.149104969145;SMAD1..7,9:-0.154809802652;FOXP3:-0.162297763388;ZNF423:-0.167798009915;FOS_FOS{B,L1}_JUN{B,D}:-0.175661112429;FOXA2:-0.180166704282;GCM1,2:-0.183509597698;LMO2:-0.187572253614;HNF1A:-0.197146492209;ARID5B:-0.206074838022;TP53:-0.214884565297;ATF6:-0.222369642614;SPZ1:-0.223817319933;SNAI1..3:-0.230344626026;TGIF1:-0.237273334648;RXRA_VDR{dimer}:-0.243192811716;HMX1:-0.243622171925;NFE2L1:-0.256787334805;NFE2L2:-0.278724407289;ELF1,2,4:-0.279671858607;CUX2:-0.286807630185;NFE2:-0.315935636503;ESRRA:-0.31593796056;SOX5:-0.324431815899;ATF4:-0.330090204061;STAT2,4,6:-0.339479638602;ZEB1:-0.347801077874;MEF2{A,B,C,D}:-0.355167372975;EP300:-0.372101923577;AR:-0.385884403033;NFKB1_REL_RELA:-0.39314088177;PAX6:-0.402984826373;PAX3,7:-0.405380168776;SPI1:-0.407638234453;ATF2:-0.410856802225;IRF1,2:-0.417447948187;TLX2:-0.421169388855;HIF1A:-0.42840375229;RORA:-0.430810000495;STAT5{A,B}:-0.442131429368;CREB1:-0.449430463038;SPIB:-0.46304636847;FOX{D1,D2}:-0.478990987807;DMAP1_NCOR{1,2}_SMARC:-0.482734769574;FOXN1:-0.496122795015;FOXL1:-0.500430701069;BPTF:-0.500914339496;HLF:-0.501018730799;GATA6:-0.524679709476;FOXO1,3,4:-0.527560329068;TEF:-0.538372543259;ETS1,2:-0.543512389076;NR1H4:-0.544551803586;NFIX:-0.566792185741;IRF7:-0.583642455043;SREBF1,2:-0.634725772324;ATF5_CREB3:-0.644407416571;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.6559467869;PAX2:-0.656398348561;FOXQ1:-0.666050090356;bHLH_family:-0.693794695;NR5A1,2:-0.711825222893;CEBPA,B_DDIT3:-0.716925772625;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.761869734056;MAFB:-0.799956520454;NFIL3:-0.807287920663;NKX2-2,8:-0.840580501984;FOX{F1,F2,J1}:-0.92779777671;ZNF238:-0.98053778508;PDX1:-1.0097874921;PPARG:-1.12657831039;HAND1,2:-1.39108199833;HBP1_HMGB_SSRP1_UBTF:-1.40457682808;HES1:-1.6621366909 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11399-118D4;search_select_hide=table117:FF:11399-118D4 | |||
}} | }} | ||
Latest revision as of 17:58, 4 June 2020
| Name: | Ciliary Epithelial Cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12009 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12009
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12009
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0536 |
| 10 | 10 | 0.1 |
| 100 | 100 | 0.978 |
| 101 | 101 | 0.7 |
| 102 | 102 | 0.501 |
| 103 | 103 | 0.193 |
| 104 | 104 | 0.742 |
| 105 | 105 | 0.168 |
| 106 | 106 | 0.0872 |
| 107 | 107 | 0.993 |
| 108 | 108 | 0.511 |
| 109 | 109 | 0.0605 |
| 11 | 11 | 0.0497 |
| 110 | 110 | 0.343 |
| 111 | 111 | 0.00424 |
| 112 | 112 | 0.0156 |
| 113 | 113 | 0.672 |
| 114 | 114 | 0.0419 |
| 115 | 115 | 0.343 |
| 116 | 116 | 0.793 |
| 117 | 117 | 0.173 |
| 118 | 118 | 0.228 |
| 119 | 119 | 0.353 |
| 12 | 12 | 0.431 |
| 120 | 120 | 0.423 |
| 121 | 121 | 0.814 |
| 122 | 122 | 0.521 |
| 123 | 123 | 0.0855 |
| 124 | 124 | 0.3 |
| 125 | 125 | 0.642 |
| 126 | 126 | 0.146 |
| 127 | 127 | 0.195 |
| 128 | 128 | 0.245 |
| 129 | 129 | 0.167 |
| 13 | 13 | 0.346 |
| 130 | 130 | 0.305 |
| 131 | 131 | 0.966 |
| 132 | 132 | 0.818 |
| 133 | 133 | 0.574 |
| 134 | 134 | 0.805 |
| 135 | 135 | 0.00827 |
| 136 | 136 | 0.396 |
| 137 | 137 | 0.181 |
| 138 | 138 | 0.166 |
| 139 | 139 | 0.128 |
| 14 | 14 | 0.793 |
| 140 | 140 | 0.376 |
| 141 | 141 | 0.148 |
| 142 | 142 | 0.435 |
| 143 | 143 | 0.26 |
| 144 | 144 | 0.827 |
| 145 | 145 | 0.509 |
| 146 | 146 | 0.509 |
| 147 | 147 | 0.777 |
| 148 | 148 | 0.0075 |
| 149 | 149 | 0.0588 |
| 15 | 15 | 0.0808 |
| 150 | 150 | 0.701 |
| 151 | 151 | 0.195 |
| 152 | 152 | 0.364 |
| 153 | 153 | 0.216 |
| 154 | 154 | 0.793 |
| 155 | 155 | 0.021 |
| 156 | 156 | 0.0374 |
| 157 | 157 | 0.638 |
| 158 | 158 | 0.0315 |
| 159 | 159 | 0.793 |
| 16 | 16 | 0.327 |
| 160 | 160 | 0.143 |
| 161 | 161 | 0.491 |
| 162 | 162 | 0.241 |
| 163 | 163 | 0.389 |
| 164 | 164 | 0.252 |
| 165 | 165 | 0.243 |
| 166 | 166 | 0.211 |
| 167 | 167 | 0.682 |
| 168 | 168 | 0.459 |
| 169 | 169 | 0.00985 |
| 17 | 17 | 0.132 |
| 18 | 18 | 0.063 |
| 19 | 19 | 0.296 |
| 2 | 2 | 0.564 |
| 20 | 20 | 0.773 |
| 21 | 21 | 0.972 |
| 22 | 22 | 0.215 |
| 23 | 23 | 0.137 |
| 24 | 24 | 0.336 |
| 25 | 25 | 0.271 |
| 26 | 26 | 0.223 |
| 27 | 27 | 0.345 |
| 28 | 28 | 0.947 |
| 29 | 29 | 0.0933 |
| 3 | 3 | 0.17 |
| 30 | 30 | 0.936 |
| 31 | 31 | 0.576 |
| 32 | 32 | 0.554 |
| 33 | 33 | 0.25 |
| 34 | 34 | 0.639 |
| 35 | 35 | 0.232 |
| 36 | 36 | 0.0137 |
| 37 | 37 | 0.0931 |
| 38 | 38 | 0.146 |
| 39 | 39 | 0.652 |
| 4 | 4 | 0.747 |
| 40 | 40 | 0.0518 |
| 41 | 41 | 0.0256 |
| 42 | 42 | 0.336 |
| 43 | 43 | 0.0849 |
| 44 | 44 | 0.698 |
| 45 | 45 | 0.545 |
| 46 | 46 | 0.0621 |
| 47 | 47 | 0.148 |
| 48 | 48 | 0.182 |
| 49 | 49 | 0.0514 |
| 5 | 5 | 0.146 |
| 50 | 50 | 0.692 |
| 51 | 51 | 0.5 |
| 52 | 52 | 0.565 |
| 53 | 53 | 0.43 |
| 54 | 54 | 0.418 |
| 55 | 55 | 0.547 |
| 56 | 56 | 0.468 |
| 57 | 57 | 0.404 |
| 58 | 58 | 0.121 |
| 59 | 59 | 0.135 |
| 6 | 6 | 0.911 |
| 60 | 60 | 0.0816 |
| 61 | 61 | 0.232 |
| 62 | 62 | 0.0628 |
| 63 | 63 | 0.15 |
| 64 | 64 | 0.183 |
| 65 | 65 | 0.157 |
| 66 | 66 | 0.911 |
| 67 | 67 | 0.714 |
| 68 | 68 | 0.158 |
| 69 | 69 | 0.66 |
| 7 | 7 | 0.231 |
| 70 | 70 | 0.0128 |
| 71 | 71 | 0.0732 |
| 72 | 72 | 0.111 |
| 73 | 73 | 0.137 |
| 74 | 74 | 0.31 |
| 75 | 75 | 0.0319 |
| 76 | 76 | 0.187 |
| 77 | 77 | 0.178 |
| 78 | 78 | 0.382 |
| 79 | 79 | 0.815 |
| 8 | 8 | 0.314 |
| 80 | 80 | 0.163 |
| 81 | 81 | 0.343 |
| 82 | 82 | 0.0379 |
| 83 | 83 | 0.573 |
| 84 | 84 | 0.313 |
| 85 | 85 | 0.0366 |
| 86 | 86 | 0.179 |
| 87 | 87 | 0.46 |
| 88 | 88 | 0.884 |
| 89 | 89 | 0.229 |
| 9 | 9 | 0.352 |
| 90 | 90 | 0.236 |
| 91 | 91 | 0.897 |
| 92 | 92 | 0.177 |
| 93 | 93 | 0.0267 |
| 94 | 94 | 0.0712 |
| 95 | 95 | 0.0781 |
| 96 | 96 | 0.0911 |
| 97 | 97 | 0.866 |
| 98 | 98 | 0.0352 |
| 99 | 99 | 0.267 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12009
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000064 (ciliated cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000067 (ciliated epithelial cell)
0005012 (multi-ciliated epithelial cell)
0002304 (non-pigmented ciliary epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000020 (sense organ)
0010371 (ecto-epithelium)
0002203 (vasculature of eye)
0001768 (uvea)
0000488 (atypical epithelium)
0007625 (pigment epithelium of eye)
0001032 (sensory system)
0002049 (vasculature)
0002200 (vasculature of head)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001778 (ciliary epithelium)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0004535 (cardiovascular system)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0001775 (ciliary body)
0010230 (eyeball of camera-type eye)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000040 (human ciliary epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)
