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(Created page with "{{f5samples |id=FF:11363-117I4 |name=Smooth Muscle Cells - Coronary Artery, donor2 |sample_id=11363 |rna_tube_id=117I4 |rna_box=117 |rna_position=I4 |sample_cell_lot=N/...")
 
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{{f5samples
{{f5samples
|id=FF:11363-117I4
|DRA_sample_Accession=CAGE@SAMD00004755
|name=Smooth Muscle Cells - Coronary Artery, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004755
|sample_id=11363
|accession_numbers=CAGE;DRX008487;DRR009359;DRZ000784;DRZ002169;DRZ012134;DRZ013519
|rna_tube_id=117I4
|accession_numbers_RNASeq=sRNA-Seq;DRX037201;DRR041567;DRZ007209
|rna_box=117
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0010314,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0004573,UBERON:0003498,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0005985,UBERON:0010317,UBERON:0007798,UBERON:0001621,UBERON:0004535,UBERON:0004571,UBERON:0004572,UBERON:0004537,UBERON:0001009
|rna_position=I4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002494,CL:0000359,CL:0002592
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=1369.00000
|rna_catalog_number=CA350-R10a
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=51 years old adult
|sample_tissue=coronary artery
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=51
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=smooth muscle cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=1.00000
|sample_note=
|profile_hcage=CNhs11987,LSID836,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10012,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000359,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002592
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000061,UBERON:0000062,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000948,UBERON:0001009,UBERON:0001015,UBERON:0001048,UBERON:0001062,UBERON:0001134,UBERON:0001621,UBERON:0001637,UBERON:0001981,UBERON:0002036,UBERON:0002049,UBERON:0002050,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003081,UBERON:0003082,UBERON:0003084,UBERON:0003104,UBERON:0003498,UBERON:0003509,UBERON:0003914,UBERON:0004111,UBERON:0004120,UBERON:0004140,UBERON:0004141,UBERON:0004290,UBERON:0004291,UBERON:0004535,UBERON:0004537,UBERON:0004571,UBERON:0004572,UBERON:0004573,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0005498,UBERON:0005985,UBERON:0006965,UBERON:0007005,UBERON:0007100,UBERON:0007500,UBERON:0007798,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000172
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!1.92!82.43!TCF21;;chr8:55370487..55370503,+!p1@SOX17!1.82!64.99!SOX17;;chr11:65686802..65686818,+!p6@DRAP1!1.69!82.43!DRAP1;;chr11:65687362..65687436,+!p3@DRAP1!1.43!115.71!DRAP1;;chr4:174451370..174451387,-!p1@HAND2!1.42!25.36!HAND2;;chr11:65686732..65686756,+!p2@DRAP1!1.39!96.69!DRAP1;;chr4:174450089..174450153,-!p2@HAND2!1.33!20.61!HAND2;;chr11:46299199..46299233,+!p1@CREB3L1!1.31!98.28!CREB3L1;;chr12:66218923..66218934,+!p14@HMGA2!1.27!17.44!HMGA2;;chr7:35293685..35293718,-!p1@TBX20!1.27!17.44!TBX20;;chr9:35732514..35732530,+!p5@CREB3!1.25!23.78!CREB3;;chr9:35732647..35732678,+!p2@CREB3!1.23!87.18!CREB3;;chr8:11561684..11561751,+!p1@GATA4!1.23!15.85!GATA4;;chr6:34204921..34204939,+!p3@HMGA1!1.21!451.75!HMGA1;;chr16:86544113..86544145,+!p1@FOXF1!1.18!17.44!FOXF1;;chr11:65687243..65687276,+!p8@DRAP1!1.14!17.44!DRAP1;;chr7:1577899..1577943,+!p3@MAFK!1.14!12.68!MAFK;;chr22:38598086..38598105,+!p1@MAFF!1.09!120.47!MAFF;;chr11:65687222..65687240,+!p7@DRAP1!1.08!14.27!DRAP1;;chr15:67458491..67458505,+!p18@SMAD3!1.08!11.10!SMAD3;;chr20:30433396..30433414,-!p1@FOXS1!1.08!11.10!FOXS1;;chr18:19749541..19749557,+!p1@GATA6!1.06!33.29!GATA6;;chr11:46299539..46299620,+!p2@CREB3L1!1.05!17.44!CREB3L1;;chr12:66218836..66218888,+!p1@HMGA2!1.04!93.52!HMGA2;;chr15:67418177..67418204,+!p9@SMAD3!1.02!9.51!SMAD3;;chr4:174451350..174451363,-!p3@HAND2!1.02!9.51!HAND2;;chr2:239756739..239756755,+!p2@TWIST2!1.01!15.85!TWIST2;;chr9:35732592..35732640,+!p1@CREB3!1.00!120.47!CREB3;;chr12:66218598..66218645,+!p2@HMGA2!1.00!42.80!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!1.00!25.36!OSR1;;chr20:6748325..6748352,+!p1@BMP2!0.99!12.68!BMP2;;chr11:65687158..65687216,+!p4@DRAP1!0.98!50.72!DRAP1;;chr15:67418119..67418162,+!p5@SMAD3!0.98!9.51!SMAD3;;chr9:132427972..132428056,+!p1@PRRX2!0.97!11.10!PRRX2;;chr10:8096772..8096787,+!p2@GATA3!0.95!9.51!GATA3;;chr11:65686776..65686787,+!p9@DRAP1!0.95!9.51!DRAP1;;chr19:47523058..47523114,+!p1@NPAS1!0.95!7.93!NPAS1;;chr2:239756671..239756732,+!p1@TWIST2!0.94!25.36!TWIST2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.93!551.62!TAX1BP3;;chr1:8934931..8934947,-!p4@ENO1!0.93!25.36!ENO1;;chr6:1610293..1610310,+!p1@FOXC1!0.93!12.68!FOXC1;;chr11:65667884..65667895,-!p2@FOSL1!0.91!28.53!FOSL1;;chr1:170633262..170633285,+!p3@PRRX1!0.90!7.93!PRRX1;;chr16:86600426..86600441,+!p1@FOXC2!0.89!17.44!FOXC2;;chr6:126070769..126070801,+!p1@HEY2!0.89!7.93!HEY2;;chr4:2263809..2263854,-!p1@MXD4!0.88!267.88!MXD4;;chr2:85981969..85982019,+!p6@ATOH8!0.87!6.34!ATOH8;;chr12:66218904..66218913,+!p11@HMGA2!0.87!6.34!HMGA2;;chr1:170633058..170633084,+!p5@PRRX1!0.87!6.34!PRRX1;;chr9:35732561..35732587,+!p3@CREB3!0.85!26.95!CREB3;;chr3:52001396..52001425,-!p4@PCBP4!0.85!11.10!PCBP4;;chr12:124873357..124873401,-!p1@NCOR2!0.83!71.33!NCOR2;;chr12:53614115..53614154,-!p1@RARG!0.83!33.29!RARG;;chr1:151032922..151032951,+!p2@MLLT11!0.81!9.51!MLLT11;;chr15:83953397..83953425,-!p1@BNC1!0.81!6.34!BNC1;;chr3:52001426..52001447,-!p3@PCBP4!0.80!15.85!PCBP4;;chr7:137686763..137686784,-!p5@CREB3L2!0.80!9.51!CREB3L2;;chr5:321810..321877,+!p1@AHRR!0.79!17.44!AHRR;;chr1:151032860..151032918,+!p1@MLLT11!0.78!64.99!MLLT11;;chr11:65686952..65686975,+!p5@DRAP1!0.78!30.12!DRAP1;;chr15:42749722..42749739,-!p2@ZFP106!0.78!9.51!ZFP106;;chr1:8938709..8938720,-!p3@ENO1!0.77!258.37!ENO1;;chr1:151032739..151032748,+!p6@MLLT11!0.77!6.34!MLLT11;;chr15:37391588..37391604,-!p11@MEIS2!0.76!6.34!MEIS2;;chr15:67458836..67458859,+!p22@SMAD3!0.76!4.76!SMAD3;;chr19:13136057..13136085,+!p11@NFIX!0.76!4.76!NFIX;;chr2:85981073..85981091,+!p5@ATOH8!0.76!4.76!ATOH8;;chr11:65480222..65480241,+!p4@KAT5!0.76!4.76!KAT5;;chr12:66357317..66357328,+!p19@HMGA2!0.76!4.76!HMGA2;;chr7:1577952..1577963,+!p8@MAFK!0.76!4.76!MAFK;;chr6:34204973..34204990,+!p4@HMGA1!0.75!68.16!HMGA1;;chr10:22292591..22292606,-!p2@DNAJC1!0.75!7.93!DNAJC1;;chr2:85980951..85981004,+!p1@ATOH8!0.75!7.93!ATOH8;;chr2:85981222..85981259,+!p2@ATOH8!0.75!7.93!ATOH8;;chr6:34205372..34205412,+!p5@HMGA1!0.74!25.36!HMGA1;;chr19:45261550..45261641,+!p6@BCL3!0.74!7.93!BCL3;;chr1:170633348..170633399,+!p2@PRRX1!0.74!6.34!PRRX1;;chr3:5021268..5021282,+!p4@BHLHE40!0.73!9.51!BHLHE40;;chr17:38498594..38498661,+!p2@RARA!0.72!15.85!RARA;;chr8:145159846..145159889,+!p6@MAF1!0.72!6.34!MAF1;;chr1:170632959..170632987,+!p4@PRRX1!0.72!4.76!PRRX1;;chr19:13106214..13106382,+!p1@NFIX!0.71!109.37!NFIX;;chr17:59477233..59477263,+!p1@TBX2!0.71!14.27!TBX2;;chr19:13134772..13134822,+!p2@NFIX!0.71!6.34!NFIX;;chr3:178789522..178789564,-!p2@ZMAT3!0.70!33.29!ZMAT3;;chr7:44143978..44143989,+!p2@AEBP1!0.70!7.93!AEBP1;;chr7:137686552..137686564,-!p9@CREB3L2!0.70!6.34!CREB3L2;;chr5:92920456..92920488,+!p9@NR2F1!0.70!4.76!NR2F1;;chr2:231084820..231084836,-!p5@SP110!0.70!4.76!SP110;;chr1:23885981..23886002,-!p1@ID3!0.69!786.21!ID3;;chr11:65667846..65667868,-!p1@FOSL1!0.69!118.88!FOSL1;;chr10:8095593..8095625,+!p3@GATA3!0.69!4.76!GATA3;;chr1:151032833..151032850,+!p3@MLLT11!0.68!9.51!MLLT11;;chr10:8096631..8096660,+!p1@GATA3!0.68!4.76!GATA3;;chr22:41697497..41697515,+!p2@ZC3H7B!0.66!11.10!ZC3H7B;;chr20:42543506..42543549,+!p2@TOX2!0.66!9.51!TOX2;;chr6:126240442..126240459,+!p4@NCOA7!0.66!4.76!NCOA7;;chr6:35310363..35310382,+!p3@PPARD!0.64!14.27!PPARD;;chr17:46621101..46621143,-!p7@HOXB2!0.64!4.76!HOXB2;;chr20:39946361..39946379,-!p2@ZHX3!0.63!11.10!ZHX3;;chr1:8924055..8924074,-!p9@ENO1!0.63!6.34!ENO1;;chr16:67881588..67881612,-!p2@CENPT!0.63!4.76!CENPT;;chr19:16435625..16435682,+!p1@KLF2!0.62!122.05!KLF2;;chr8:37553292..37553317,+!p1@ZNF703!0.62!90.35!ZNF703;;chr6:126070748..126070768,+!p2@HEY2!0.62!3.17!HEY2;;chr7:150945865..150945896,-!p4@SMARCD3!0.62!3.17!SMARCD3;;chr8:55370720..55370733,+!p2@SOX17!0.62!3.17!SOX17;;chr15:67458861..67458879,+!p17@SMAD3!0.62!3.17!SMAD3;;chr15:90294087..90294115,-!p1@MESP1!0.62!3.17!MESP1;;chr16:31076332..31076388,-!p3@ZNF668!0.62!3.17!ZNF668;;chr16:86600458..86600461,+!p3@FOXC2!0.62!3.17!FOXC2;;chr16:86600870..86600921,+!p2@FOXC2!0.62!3.17!FOXC2;;chr16:86601088..86601105,+!p5@FOXC2!0.62!3.17!FOXC2;;chr17:40477163..40477183,-!p7@STAT3!0.62!3.17!STAT3;;chr17:46621279..46621297,-!p13@HOXB2!0.62!3.17!HOXB2;;chr19:1863437..1863446,-!p5@KLF16!0.62!3.17!KLF16;;chr9:16705069..16705086,-!p3@BNC2!0.62!3.17!BNC2;;chr9:132427883..132427951,+!p2@PRRX2!0.62!3.17!PRRX2;;chr9:14314066..14314075,-!p11@NFIB!0.62!3.17!NFIB;;chr11:34642612..34642646,+!p1@EHF!0.62!3.17!EHF;;chr11:46299443..46299459,+!p4@CREB3L1!0.62!3.17!CREB3L1;;chr11:62369084..62369093,-!p9@MTA2!0.62!3.17!MTA2;;chr12:66357214..66357233,+!p13@HMGA2!0.62!3.17!HMGA2;;chr13:37494275..37494304,-!p2@SMAD9!0.62!3.17!SMAD9;;chr1:170632723..170632739,+!p8@PRRX1!0.62!3.17!PRRX1;;chr1:2234717..2234744,+!p4@SKI!0.62!3.17!SKI;;chr2:19558327..19558334,-!p2@OSR1!0.62!3.17!OSR1;;chr2:85981027..85981047,+!p8@ATOH8!0.62!3.17!ATOH8;;chr2:85981107..85981120,+!p3@ATOH8!0.62!3.17!ATOH8;;chr3:141087562..141087594,+!p12@ZBTB38!0.62!3.17!ZBTB38;;chr3:25470156..25470227,+!p2@RARB!0.62!3.17!RARB;;chr3:52001374..52001385,-!p6@PCBP4!0.62!3.17!PCBP4;;chr12:66218255..66218304,+!p3@HMGA2!0.61!9.51!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!0.61!4.76!HMGA2;;chr18:19749386..19749404,+!p2@GATA6!0.61!4.76!GATA6;;chr11:65686855..65686946,+!p1@DRAP1!0.60!272.64!DRAP1;;chr3:52001448..52001478,-!p2@PCBP4!0.60!50.72!PCBP4;;chr22:38598057..38598071,+!p3@MAFF!0.60!7.93!MAFF;;chr19:53758058..53758088,-!p2@ZNF677!0.59!11.10!ZNF677;;chr19:58951496..58951539,-!p1@ZNF132!0.59!7.93!ZNF132;;chr8:145159447..145159458,+!p4@MAF1!0.59!7.93!MAF1;;chr17:46622114..46622138,-!p4@HOXB2!0.59!4.76!HOXB2;;chr7:100076744..100076749,-!p8@TSC22D4!0.59!3.17!TSC22D4;;chr2:85980919..85980942,+!p4@ATOH8!0.59!3.17!ATOH8;;chr6:144329384..144329405,-!p1@PLAGL1!0.58!39.63!PLAGL1;;chr12:124873852..124873881,-!p3@NCOR2!0.58!20.61!NCOR2;;chr16:3285119..3285133,-!p2@ZNF200!0.58!6.34!ZNF200;;chr1:151032782..151032801,+!p4@MLLT11!0.58!6.34!MLLT11;;chr8:72756063..72756125,-!p1@MSC!0.58!6.34!MSC;;chr11:65686702..65686715,+!p11@DRAP1!0.58!3.17!DRAP1;;chr16:29819446..29819471,+!p9@MAZ!0.57!9.51!MAZ;;chr16:3185125..3185173,+!p1@ZNF213!0.57!7.93!ZNF213;;chr17:17723626..17723663,-!p4@SREBF1!0.57!6.34!SREBF1;;chr8:145159324..145159333,+!p5@MAF1!0.57!6.34!MAF1;;chr6:10412392..10412409,-!p4@TFAP2A!0.57!3.17!TFAP2A;;chr7:1577111..1577132,+!p4@MAFK!0.57!3.17!MAFK;;chr8:72756637..72756664,-!p3@MSC!0.57!3.17!MSC;;chr16:30407021..30407061,+!p3@ZNF48!0.57!3.17!ZNF48;;chr19:12175596..12175605,+!p4@ZNF844!0.57!3.17!ZNF844;;chr1:23886132..23886156,-!p2@ID3!0.57!3.17!ID3;;chr3:185826286..185826318,-!p5@ETV5!0.57!3.17!ETV5;;chr5:92918919..92918942,+!p1@NR2F1!0.56!14.27!NR2F1;;chr20:42543441..42543497,+!p1@TOX2!0.56!14.27!TOX2;;chr12:48298765..48298783,-!p2@VDR!0.56!6.34!VDR;;chr12:56575310..56575344,-!p3@SMARCC2!0.56!4.76!SMARCC2;;chr3:168864315..168864339,-!p2@MECOM!0.56!4.76!MECOM;;chr4:81105027..81105039,+!p3@PRDM8!0.56!3.17!PRDM8;;chr19:1652555..1652568,-!p2@TCF3!0.55!12.68!TCF3;;chr5:139487608..139487663,+!p3@PURA!0.55!6.34!PURA;;chr1:221052994..221053008,+!p6@HLX!0.55!3.17!HLX;;chr4:81104958..81104981,+!p5@PRDM8!0.55!3.17!PRDM8;;chr6:10415276..10415341,-!p2@TFAP2A!0.54!3.17!TFAP2A;;chr10:44144187..44144201,-!p3@ZNF32!0.54!3.17!ZNF32;;chr11:120107344..120107351,+!p1@POU2F3!0.54!3.17!POU2F3;;chr19:42636586..42636607,-!p1@POU2F2!0.53!7.93!POU2F2;;chr17:42298339..42298361,-!p5@UBTF!0.53!6.34!UBTF;;chr2:185463247..185463263,+!p1@ZNF804A!0.53!4.76!ZNF804A;;chr19:58666441..58666478,-!p2@ZNF329!0.53!4.76!ZNF329;;chr19:38720294..38720348,-!p1@DPF1!0.53!3.17!DPF1;;chr8:72756023..72756055,-!p6@MSC!0.53!3.17!MSC;;chr12:7077134..7077154,-!p3@PHB2!0.53!3.17!PHB2;;chr8:128748308..128748324,+!p2@MYC!0.52!84.01!MYC;;chr6:35310395..35310410,+!p2@PPARD!0.52!11.10!PPARD;;chr10:94449703..94449718,+!p1@HHEX!0.52!11.10!HHEX;;chr19:56652686..56652701,+!p3@ZNF444!0.52!4.76!ZNF444;;chr1:8923998..8924033,-!p8@ENO1!0.52!4.76!ENO1;;chr18:19749517..19749531,+!p3@GATA6!0.52!4.76!GATA6;;chr19:13134457..13134462,+!p5@NFIX!0.52!4.76!NFIX;;chr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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002592;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003498;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
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|fonse_cell_line_closure=
Line 67: Line 43:
|fonse_treatment=
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|fonse_treatment_closure=
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|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor2.CNhs11987.11363-117I4.hg38.nobarcode.ctss.bed.gz
|id=FF:11363-117I4
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|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11363
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.GAGTGG.11363
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|name=Smooth Muscle Cells - Coronary Artery, donor2
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|rna_box=117
|rna_catalog_number=CA350-R10a
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=1369
|rna_od260/230=
|rna_od260/280=
|rna_position=I4
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=117I4
|rna_weight_ug=10
|rnaseq_library_id=SRhi10012.GAGTGG
|sample_age=51
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=smooth muscle cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=51 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.78201227049554e-241!GO:0005737;cytoplasm;3.96590266727552e-205!GO:0044444;cytoplasmic part;4.86940538491687e-159!GO:0043226;organelle;3.32183418016975e-125!GO:0043229;intracellular organelle;6.12198122306288e-125!GO:0043231;intracellular membrane-bound organelle;1.29519944549447e-119!GO:0043227;membrane-bound organelle;2.36115360674813e-119!GO:0044422;organelle part;2.55715759763443e-118!GO:0044446;intracellular organelle part;3.3048784843798e-117!GO:0032991;macromolecular complex;2.72376875419456e-85!GO:0005739;mitochondrion;4.11258672395318e-81!GO:0030529;ribonucleoprotein complex;3.76371912277255e-76!GO:0005515;protein binding;2.16976359798087e-70!GO:0031090;organelle membrane;3.19689917933895e-58!GO:0043233;organelle lumen;2.84581074161671e-57!GO:0031974;membrane-enclosed lumen;2.84581074161671e-57!GO:0044238;primary metabolic process;4.22105412941287e-57!GO:0044237;cellular metabolic process;6.36062984409962e-57!GO:0005840;ribosome;6.87366563282201e-56!GO:0044429;mitochondrial part;6.14424854797661e-55!GO:0019538;protein metabolic process;1.15190452236641e-54!GO:0009058;biosynthetic process;2.63804407191241e-53!GO:0006412;translation;2.63804407191241e-53!GO:0003723;RNA binding;1.41767950209015e-50!GO:0003735;structural constituent of ribosome;8.3404772798344e-50!GO:0044260;cellular macromolecule metabolic process;2.4675318708229e-48!GO:0044249;cellular biosynthetic process;2.60264571919148e-48!GO:0044267;cellular protein metabolic process;1.74805844752688e-47!GO:0009059;macromolecule biosynthetic process;1.1479733800977e-45!GO:0043170;macromolecule metabolic process;1.92095882980746e-45!GO:0043234;protein complex;2.92615654061306e-43!GO:0005829;cytosol;1.02756359871529e-42!GO:0044428;nuclear part;1.15702075560217e-41!GO:0033279;ribosomal subunit;1.25050467668139e-41!GO:0031967;organelle envelope;1.82694484841803e-41!GO:0031975;envelope;3.97865809050117e-41!GO:0015031;protein transport;1.89261485939426e-39!GO:0016043;cellular component organization and biogenesis;1.89261485939426e-39!GO:0005740;mitochondrial envelope;1.00089102050505e-37!GO:0033036;macromolecule localization;3.31454949167199e-37!GO:0045184;establishment of protein localization;3.70570533523271e-37!GO:0008104;protein localization;1.76548441508473e-36!GO:0031966;mitochondrial membrane;2.22570002622137e-35!GO:0019866;organelle inner membrane;5.35936695473817e-32!GO:0005743;mitochondrial inner membrane;9.33792083446262e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.23607916239541e-31!GO:0006396;RNA processing;4.10794011561452e-31!GO:0046907;intracellular transport;9.11917348067731e-29!GO:0031981;nuclear lumen;3.62990355149467e-27!GO:0044445;cytosolic part;1.55005869625265e-26!GO:0065003;macromolecular complex assembly;3.00322728933972e-26!GO:0005783;endoplasmic reticulum;7.00872488427842e-26!GO:0006886;intracellular protein transport;9.74644643807468e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.68201854767006e-25!GO:0006119;oxidative phosphorylation;2.57177398254886e-25!GO:0022607;cellular component assembly;3.37179655403119e-23!GO:0044455;mitochondrial membrane part;1.01938547630293e-22!GO:0043228;non-membrane-bound organelle;2.65553614621298e-22!GO:0043232;intracellular non-membrane-bound organelle;2.65553614621298e-22!GO:0031980;mitochondrial lumen;6.52122076110178e-22!GO:0005759;mitochondrial matrix;6.52122076110178e-22!GO:0016071;mRNA metabolic process;1.26245131792465e-21!GO:0015934;large ribosomal subunit;2.34804523024364e-21!GO:0015935;small ribosomal subunit;3.18408564220368e-21!GO:0005634;nucleus;5.87265463478023e-21!GO:0012505;endomembrane system;9.11297539220689e-21!GO:0006996;organelle organization and biogenesis;9.16509224746954e-21!GO:0008380;RNA splicing;2.26630847506729e-20!GO:0005746;mitochondrial respiratory chain;2.50112030452114e-20!GO:0044432;endoplasmic reticulum part;8.89573899933028e-20!GO:0006457;protein folding;1.30917969352394e-19!GO:0051649;establishment of cellular localization;7.72726816749783e-19!GO:0016462;pyrophosphatase activity;8.86515585738834e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.26262170308677e-18!GO:0051641;cellular localization;1.26262170308677e-18!GO:0006397;mRNA processing;1.45272748240687e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;1.49020274793857e-18!GO:0017111;nucleoside-triphosphatase activity;1.56188125738516e-18!GO:0051186;cofactor metabolic process;1.63773865755422e-18!GO:0005794;Golgi apparatus;6.01908226594312e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.55929336757254e-17!GO:0050136;NADH dehydrogenase (quinone) activity;6.73294884006156e-17!GO:0003954;NADH dehydrogenase activity;6.73294884006156e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.73294884006156e-17!GO:0048770;pigment granule;2.82564826818956e-16!GO:0042470;melanosome;2.82564826818956e-16!GO:0000166;nucleotide binding;3.90985692309525e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.19988126033318e-16!GO:0016491;oxidoreductase activity;1.4260466319874e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.52553161285569e-15!GO:0042775;organelle ATP synthesis coupled electron transport;2.59021206574091e-15!GO:0042773;ATP synthesis coupled electron transport;2.59021206574091e-15!GO:0016874;ligase activity;2.95445750585369e-15!GO:0000502;proteasome complex (sensu Eukaryota);3.2923523276721e-15!GO:0022618;protein-RNA complex assembly;3.89220593126546e-15!GO:0030964;NADH dehydrogenase complex (quinone);6.02074848677282e-15!GO:0045271;respiratory chain complex I;6.02074848677282e-15!GO:0005747;mitochondrial respiratory chain complex I;6.02074848677282e-15!GO:0005761;mitochondrial ribosome;6.18192572262565e-15!GO:0000313;organellar ribosome;6.18192572262565e-15!GO:0005681;spliceosome;7.0349647553499e-15!GO:0005654;nucleoplasm;7.24273111356296e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.24273111356296e-15!GO:0005730;nucleolus;8.52517617644759e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.76842535843493e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.27433829094824e-14!GO:0016192;vesicle-mediated transport;2.38184904386943e-14!GO:0005789;endoplasmic reticulum membrane;3.94084323366435e-14!GO:0051082;unfolded protein binding;3.99251233161186e-14!GO:0009055;electron carrier activity;4.74806932366681e-14!GO:0044248;cellular catabolic process;6.49195909233452e-14!GO:0006605;protein targeting;7.24356663968246e-14!GO:0008135;translation factor activity, nucleic acid binding;8.63141283630516e-14!GO:0048193;Golgi vesicle transport;1.85346456521015e-13!GO:0006732;coenzyme metabolic process;1.95276814710087e-13!GO:0044265;cellular macromolecule catabolic process;3.81133495175485e-13!GO:0009057;macromolecule catabolic process;5.85584394219971e-13!GO:0044451;nucleoplasm part;9.18762015505712e-13!GO:0043283;biopolymer metabolic process;9.66805836608938e-13!GO:0008134;transcription factor binding;1.52359027713353e-12!GO:0017076;purine nucleotide binding;1.78098366213551e-12!GO:0043285;biopolymer catabolic process;2.22523586222511e-12!GO:0010467;gene expression;2.95784366456095e-12!GO:0032553;ribonucleotide binding;4.2504697187209e-12!GO:0032555;purine ribonucleotide binding;4.2504697187209e-12!GO:0006512;ubiquitin cycle;5.30040688792314e-12!GO:0012501;programmed cell death;6.75055687796875e-12!GO:0006915;apoptosis;1.19741486184729e-11!GO:0009259;ribonucleotide metabolic process;1.83504563497384e-11!GO:0043412;biopolymer modification;2.26196555272876e-11!GO:0005793;ER-Golgi intermediate compartment;3.67854863727024e-11!GO:0006091;generation of precursor metabolites and energy;4.08136596495938e-11!GO:0003743;translation initiation factor activity;4.65742284114516e-11!GO:0009150;purine ribonucleotide metabolic process;4.97784871323497e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.5484690732539e-11!GO:0042254;ribosome biogenesis and assembly;8.85881756969367e-11!GO:0006163;purine nucleotide metabolic process;9.00511630924025e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;9.61868816456225e-11!GO:0008219;cell death;1.39352686837385e-10!GO:0016265;death;1.39352686837385e-10!GO:0044257;cellular protein catabolic process;1.50574845016504e-10!GO:0019941;modification-dependent protein catabolic process;1.60964039907909e-10!GO:0043632;modification-dependent macromolecule catabolic process;1.60964039907909e-10!GO:0006464;protein modification process;1.9401685525542e-10!GO:0009260;ribonucleotide biosynthetic process;2.54313234309964e-10!GO:0009199;ribonucleoside triphosphate metabolic process;3.14313473752625e-10!GO:0006511;ubiquitin-dependent protein catabolic process;3.40115704683092e-10!GO:0009152;purine ribonucleotide biosynthetic process;3.49536558546243e-10!GO:0006259;DNA metabolic process;4.71050585266136e-10!GO:0006413;translational initiation;4.86919000292569e-10!GO:0030163;protein catabolic process;5.87536603670208e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.89382966990162e-10!GO:0009141;nucleoside triphosphate metabolic process;6.03610017604538e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.14577946981594e-10!GO:0009144;purine nucleoside triphosphate metabolic process;6.14577946981594e-10!GO:0006164;purine nucleotide biosynthetic process;6.6244193921161e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;7.69584939927429e-10!GO:0000375;RNA splicing, via transesterification reactions;7.69584939927429e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.69584939927429e-10!GO:0005524;ATP binding;1.05007313669502e-09!GO:0030554;adenyl nucleotide binding;1.08728586877127e-09!GO:0030120;vesicle coat;1.52362055999401e-09!GO:0030662;coated vesicle membrane;1.52362055999401e-09!GO:0032559;adenyl ribonucleotide binding;1.88114668391908e-09!GO:0051188;cofactor biosynthetic process;2.34645105152551e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.58204113922355e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.58204113922355e-09!GO:0015078;hydrogen ion transmembrane transporter activity;2.58204113922355e-09!GO:0009056;catabolic process;2.81953709917934e-09!GO:0015986;ATP synthesis coupled proton transport;2.87878068658223e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.87878068658223e-09!GO:0019829;cation-transporting ATPase activity;3.42547496034705e-09!GO:0016887;ATPase activity;3.54222341154957e-09!GO:0046034;ATP metabolic process;4.0815090984646e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.11558675896741e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.11558675896741e-09!GO:0042623;ATPase activity, coupled;6.15728852242271e-09!GO:0008639;small protein conjugating enzyme activity;6.57251519436034e-09!GO:0048475;coated membrane;7.25481571700043e-09!GO:0030117;membrane coat;7.25481571700043e-09!GO:0006446;regulation of translational initiation;7.92248652397629e-09!GO:0006461;protein complex assembly;8.92816893659423e-09!GO:0004842;ubiquitin-protein ligase activity;1.04574014293076e-08!GO:0019787;small conjugating protein ligase activity;1.20727676842583e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.34079595689771e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.41022981518523e-08!GO:0006913;nucleocytoplasmic transport;1.44571947686808e-08!GO:0003712;transcription cofactor activity;1.47397381743962e-08!GO:0009060;aerobic respiration;1.69539519494092e-08!GO:0008565;protein transporter activity;1.7576819586191e-08!GO:0048523;negative regulation of cellular process;1.89266860246928e-08!GO:0006754;ATP biosynthetic process;2.91572832928992e-08!GO:0006753;nucleoside phosphate metabolic process;2.91572832928992e-08!GO:0051246;regulation of protein metabolic process;2.97881449068288e-08!GO:0051169;nuclear transport;2.97881449068288e-08!GO:0017038;protein import;3.59225676067487e-08!GO:0006399;tRNA metabolic process;4.06158119713208e-08!GO:0043687;post-translational protein modification;4.31486733013776e-08!GO:0044431;Golgi apparatus part;4.51731317071442e-08!GO:0043067;regulation of programmed cell death;4.75725414942553e-08!GO:0045333;cellular respiration;5.3265155756434e-08!GO:0016881;acid-amino acid ligase activity;5.91539846625641e-08!GO:0042981;regulation of apoptosis;6.31548878447951e-08!GO:0003924;GTPase activity;6.78880516351588e-08!GO:0007049;cell cycle;8.67695340776104e-08!GO:0016787;hydrolase activity;1.19979863438195e-07!GO:0009117;nucleotide metabolic process;1.28719315315205e-07!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.38744333245161e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.43588516625604e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.71140644195659e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.71140644195659e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.71140644195659e-07!GO:0005768;endosome;2.43336748469684e-07!GO:0005788;endoplasmic reticulum lumen;2.50226084710597e-07!GO:0048519;negative regulation of biological process;2.50823599174748e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.72025597178864e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.03861592704916e-07!GO:0006752;group transfer coenzyme metabolic process;3.04715608646492e-07!GO:0007005;mitochondrion organization and biogenesis;3.43567818248158e-07!GO:0043038;amino acid activation;4.33273350474965e-07!GO:0006418;tRNA aminoacylation for protein translation;4.33273350474965e-07!GO:0043039;tRNA aminoacylation;4.33273350474965e-07!GO:0006364;rRNA processing;4.56749227945901e-07!GO:0016023;cytoplasmic membrane-bound vesicle;5.24649072273691e-07!GO:0016072;rRNA metabolic process;5.83412088782954e-07!GO:0016740;transferase activity;6.8308712212159e-07!GO:0030532;small nuclear ribonucleoprotein complex;7.05473136506855e-07!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;7.32109467979369e-07!GO:0015399;primary active transmembrane transporter activity;7.32109467979369e-07!GO:0031988;membrane-bound vesicle;9.10729612581221e-07!GO:0045259;proton-transporting ATP synthase complex;9.9256622919788e-07!GO:0009108;coenzyme biosynthetic process;1.07932284107142e-06!GO:0043069;negative regulation of programmed cell death;1.1387345676081e-06!GO:0005635;nuclear envelope;1.42072612538395e-06!GO:0006916;anti-apoptosis;1.53440059762247e-06!GO:0006118;electron transport;1.62701062163311e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.7854476221454e-06!GO:0043066;negative regulation of apoptosis;1.9077439198396e-06!GO:0051187;cofactor catabolic process;1.9218716121741e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.93365904104245e-06!GO:0044262;cellular carbohydrate metabolic process;2.01840269833021e-06!GO:0008026;ATP-dependent helicase activity;2.07992729235038e-06!GO:0044440;endosomal part;2.31904285808671e-06!GO:0010008;endosome membrane;2.31904285808671e-06!GO:0005770;late endosome;2.44488692610791e-06!GO:0045454;cell redox homeostasis;2.47266545888324e-06!GO:0031982;vesicle;2.48765477619807e-06!GO:0031965;nuclear membrane;2.49170788304922e-06!GO:0031968;organelle outer membrane;2.6326121657068e-06!GO:0031410;cytoplasmic vesicle;2.65528503933225e-06!GO:0006099;tricarboxylic acid cycle;2.73188895305778e-06!GO:0046356;acetyl-CoA catabolic process;2.73188895305778e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;2.99123213657123e-06!GO:0005798;Golgi-associated vesicle;3.57397338643169e-06!GO:0000139;Golgi membrane;4.06786305879259e-06!GO:0044453;nuclear membrane part;4.27905301651564e-06!GO:0006084;acetyl-CoA metabolic process;4.32280683034046e-06!GO:0005762;mitochondrial large ribosomal subunit;4.89497820615994e-06!GO:0000315;organellar large ribosomal subunit;4.89497820615994e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.518198670814e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.66321278221616e-06!GO:0065002;intracellular protein transport across a membrane;6.12728244171415e-06!GO:0009109;coenzyme catabolic process;6.65076617118294e-06!GO:0005741;mitochondrial outer membrane;6.65111547180227e-06!GO:0005905;coated pit;7.29827439208748e-06!GO:0005773;vacuole;7.29827439208748e-06!GO:0043492;ATPase activity, coupled to movement of substances;7.89204574926244e-06!GO:0019867;outer membrane;7.98231798482546e-06!GO:0006323;DNA packaging;8.26141253418461e-06!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;8.39127621847055e-06!GO:0006082;organic acid metabolic process;9.01215779747753e-06!GO:0051726;regulation of cell cycle;1.10327231692698e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;1.10713834035709e-05!GO:0022402;cell cycle process;1.10713834035709e-05!GO:0019752;carboxylic acid metabolic process;1.24581117514787e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.34907766290602e-05!GO:0000278;mitotic cell cycle;1.37325986087601e-05!GO:0000074;regulation of progression through cell cycle;1.43292819336502e-05!GO:0006793;phosphorus metabolic process;1.50665281860588e-05!GO:0006796;phosphate metabolic process;1.50665281860588e-05!GO:0004298;threonine endopeptidase activity;1.52232975480629e-05!GO:0008654;phospholipid biosynthetic process;1.7441298714974e-05!GO:0031252;leading edge;1.78639596310902e-05!GO:0003714;transcription corepressor activity;1.83091630935926e-05!GO:0019843;rRNA binding;1.93788828945408e-05!GO:0004386;helicase activity;2.0223849007598e-05!GO:0016604;nuclear body;2.39006777484303e-05!GO:0016044;membrane organization and biogenesis;2.46669728975485e-05!GO:0048522;positive regulation of cellular process;2.50237832025228e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.66626173894124e-05!GO:0016310;phosphorylation;2.89609341457037e-05!GO:0051170;nuclear import;2.95547990497909e-05!GO:0065004;protein-DNA complex assembly;3.15919571169267e-05!GO:0006606;protein import into nucleus;3.19234371765232e-05!GO:0016779;nucleotidyltransferase activity;3.218088357271e-05!GO:0005643;nuclear pore;4.14179012942286e-05!GO:0008361;regulation of cell size;4.3930290346846e-05!GO:0051789;response to protein stimulus;4.58083051363108e-05!GO:0006986;response to unfolded protein;4.58083051363108e-05!GO:0016853;isomerase activity;4.85454197665855e-05!GO:0005667;transcription factor complex;5.08053763343706e-05!GO:0016049;cell growth;5.11694221061117e-05!GO:0000245;spliceosome assembly;6.44893244491604e-05!GO:0005525;GTP binding;6.59770346387197e-05!GO:0005048;signal sequence binding;6.97057328797069e-05!GO:0046930;pore complex;7.01940366030481e-05!GO:0001558;regulation of cell growth;7.2535657089102e-05!GO:0030036;actin cytoskeleton organization and biogenesis;7.4409564532236e-05!GO:0033116;ER-Golgi intermediate compartment membrane;8.11787924334465e-05!GO:0008610;lipid biosynthetic process;8.21064025794462e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.22077386053924e-05!GO:0006414;translational elongation;8.39922452643304e-05!GO:0016567;protein ubiquitination;8.93225990070825e-05!GO:0030867;rough endoplasmic reticulum membrane;9.15208878406656e-05!GO:0009165;nucleotide biosynthetic process;9.70397380066184e-05!GO:0000323;lytic vacuole;0.000109229402775274!GO:0005764;lysosome;0.000109229402775274!GO:0030133;transport vesicle;0.000109938414872898!GO:0006366;transcription from RNA polymerase II promoter;0.000132175543910365!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000143295984962847!GO:0032446;protein modification by small protein conjugation;0.000145605889602868!GO:0006974;response to DNA damage stimulus;0.000155600656497274!GO:0003899;DNA-directed RNA polymerase activity;0.000160231731567841!GO:0043284;biopolymer biosynthetic process;0.000160261382603357!GO:0003724;RNA helicase activity;0.000188924383583244!GO:0000314;organellar small ribosomal subunit;0.000195775884433559!GO:0005763;mitochondrial small ribosomal subunit;0.000195775884433559!GO:0032561;guanyl ribonucleotide binding;0.00020799159504302!GO:0019001;guanyl nucleotide binding;0.00020799159504302!GO:0016563;transcription activator activity;0.000211597564551174!GO:0006613;cotranslational protein targeting to membrane;0.000220947302212869!GO:0000151;ubiquitin ligase complex;0.00022376213385675!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000226501476980461!GO:0065009;regulation of a molecular function;0.000254187642559283!GO:0016564;transcription repressor activity;0.00025654871858804!GO:0016568;chromatin modification;0.000275572388784129!GO:0030659;cytoplasmic vesicle membrane;0.000278139749606658!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000310988197577365!GO:0006333;chromatin assembly or disassembly;0.000311469763327385!GO:0022890;inorganic cation transmembrane transporter activity;0.000335211990747281!GO:0007006;mitochondrial membrane organization and biogenesis;0.000359410192574374!GO:0043681;protein import into mitochondrion;0.000359410192574374!GO:0016859;cis-trans isomerase activity;0.00036808527296697!GO:0030663;COPI coated vesicle membrane;0.000377264073909859!GO:0030126;COPI vesicle coat;0.000377264073909859!GO:0003697;single-stranded DNA binding;0.000383260180250899!GO:0006334;nucleosome assembly;0.000387425052629203!GO:0003713;transcription coactivator activity;0.000400151977904163!GO:0030658;transport vesicle membrane;0.000410630553922417!GO:0051276;chromosome organization and biogenesis;0.00042885655722129!GO:0043623;cellular protein complex assembly;0.000432224607459335!GO:0046474;glycerophospholipid biosynthetic process;0.000449056001992499!GO:0030118;clathrin coat;0.000454584811711713!GO:0015992;proton transport;0.000465206261507126!GO:0030176;integral to endoplasmic reticulum membrane;0.000474960961051067!GO:0030137;COPI-coated vesicle;0.00048877108357197!GO:0006818;hydrogen transport;0.000494474433579928!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000494692406322789!GO:0030132;clathrin coat of coated pit;0.000499980326042864!GO:0009719;response to endogenous stimulus;0.000505541690606625!GO:0030029;actin filament-based process;0.000523131487281893!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000523131487281893!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.000526099637061896!GO:0015002;heme-copper terminal oxidase activity;0.000526099637061896!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.000526099637061896!GO:0004129;cytochrome-c oxidase activity;0.000526099637061896!GO:0043021;ribonucleoprotein binding;0.000543102373555673!GO:0031497;chromatin assembly;0.00054419612782202!GO:0005885;Arp2/3 protein complex;0.000592784971075175!GO:0006626;protein targeting to mitochondrion;0.000643539891996727!GO:0031072;heat shock protein binding;0.000722362319411469!GO:0006778;porphyrin metabolic process;0.000758478257340849!GO:0033013;tetrapyrrole metabolic process;0.000758478257340849!GO:0044433;cytoplasmic vesicle part;0.000761106242260862!GO:0006807;nitrogen compound metabolic process;0.000773032373305232!GO:0007243;protein kinase cascade;0.00082815736700193!GO:0045786;negative regulation of progression through cell cycle;0.00088589994818367!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000887985709224559!GO:0048518;positive regulation of biological process;0.000927918735594635!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000959088279972225!GO:0050662;coenzyme binding;0.000986907764173442!GO:0051920;peroxiredoxin activity;0.00104827847930483!GO:0008632;apoptotic program;0.00105629276112922!GO:0030660;Golgi-associated vesicle membrane;0.00115158318228466!GO:0046467;membrane lipid biosynthetic process;0.00119900737271345!GO:0048468;cell development;0.00131087966360867!GO:0040008;regulation of growth;0.0013330177672497!GO:0031324;negative regulation of cellular metabolic process;0.00137439018501822!GO:0030125;clathrin vesicle coat;0.00150917252119109!GO:0030665;clathrin coated vesicle membrane;0.00150917252119109!GO:0046483;heterocycle metabolic process;0.00151376744851583!GO:0046489;phosphoinositide biosynthetic process;0.0015825309096625!GO:0006839;mitochondrial transport;0.00159804373045268!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00159804373045268!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00159804373045268!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00159804373045268!GO:0042168;heme metabolic process;0.00166540463328849!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00167356780145664!GO:0006979;response to oxidative stress;0.00169428482093988!GO:0016607;nuclear speck;0.00177899253467261!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00183883895468725!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00183883895468725!GO:0030119;AP-type membrane coat adaptor complex;0.00190927161878629!GO:0005769;early endosome;0.00197737309548062!GO:0006281;DNA repair;0.00200917012142784!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00205179511666699!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00205179511666699!GO:0007067;mitosis;0.00214103485710092!GO:0048471;perinuclear region of cytoplasm;0.00220150279027978!GO:0006612;protein targeting to membrane;0.00221497394670629!GO:0008092;cytoskeletal protein binding;0.00221497394670629!GO:0042802;identical protein binding;0.00221497394670629!GO:0009308;amine metabolic process;0.00222892390118946!GO:0005774;vacuolar membrane;0.00223513797177078!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0022787933171421!GO:0008186;RNA-dependent ATPase activity;0.00228416527389561!GO:0031902;late endosome membrane;0.00232896197948269!GO:0046519;sphingoid metabolic process;0.00233798960200514!GO:0006383;transcription from RNA polymerase III promoter;0.00238175279684294!GO:0004177;aminopeptidase activity;0.00243031552927807!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00251070708759064!GO:0000087;M phase of mitotic cell cycle;0.00251230220500077!GO:0030880;RNA polymerase complex;0.0025238273034558!GO:0009892;negative regulation of metabolic process;0.00266788625074868!GO:0005791;rough endoplasmic reticulum;0.00269999976962515!GO:0006779;porphyrin biosynthetic process;0.00272935011378927!GO:0033014;tetrapyrrole biosynthetic process;0.00272935011378927!GO:0006066;alcohol metabolic process;0.00280353145799233!GO:0006007;glucose catabolic process;0.00280613202879121!GO:0019899;enzyme binding;0.00303089480390424!GO:0012506;vesicle membrane;0.00309259265532663!GO:0045045;secretory pathway;0.00320760308840435!GO:0043433;negative regulation of transcription factor activity;0.0033810709968895!GO:0030131;clathrin adaptor complex;0.0033810709968895!GO:0000785;chromatin;0.0033810709968895!GO:0006891;intra-Golgi vesicle-mediated transport;0.00350187397956062!GO:0016126;sterol biosynthetic process;0.00357078895752933!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00368435921340188!GO:0005975;carbohydrate metabolic process;0.0039009180793438!GO:0007264;small GTPase mediated signal transduction;0.00410629120234658!GO:0015630;microtubule cytoskeleton;0.00410629120234658!GO:0019318;hexose metabolic process;0.00473147840473789!GO:0044437;vacuolar part;0.00473147840473789!GO:0006509;membrane protein ectodomain proteolysis;0.00477291716100899!GO:0033619;membrane protein proteolysis;0.00477291716100899!GO:0004004;ATP-dependent RNA helicase activity;0.00480778700513539!GO:0044255;cellular lipid metabolic process;0.00480778700513539!GO:0005996;monosaccharide metabolic process;0.00481578411291074!GO:0008250;oligosaccharyl transferase complex;0.00491726229325311!GO:0048037;cofactor binding;0.00508394064509653!GO:0006595;polyamine metabolic process;0.00539733167923032!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00542043791325293!GO:0008139;nuclear localization sequence binding;0.00542043791325293!GO:0051087;chaperone binding;0.00544212713916539!GO:0008243;plasminogen activator activity;0.00551944417852903!GO:0017166;vinculin binding;0.00570512256389824!GO:0043566;structure-specific DNA binding;0.005834606002036!GO:0030134;ER to Golgi transport vesicle;0.00586931100074129!GO:0006783;heme biosynthetic process;0.00587116541119331!GO:0008047;enzyme activator activity;0.00591348161040646!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00604243748217977!GO:0000428;DNA-directed RNA polymerase complex;0.00604243748217977!GO:0006897;endocytosis;0.00610671092634933!GO:0010324;membrane invagination;0.00610671092634933!GO:0006520;amino acid metabolic process;0.00617845939770287!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00636020564968851!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00650333297168116!GO:0030027;lamellipodium;0.00655822233389785!GO:0004576;oligosaccharyl transferase activity;0.00658352359158836!GO:0000049;tRNA binding;0.00658452803515375!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00671886710653034!GO:0006635;fatty acid beta-oxidation;0.00684204933412038!GO:0007033;vacuole organization and biogenesis;0.00714288666152142!GO:0006672;ceramide metabolic process;0.00714288666152142!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0077429868669052!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00792451221228677!GO:0051427;hormone receptor binding;0.00807518756629119!GO:0008180;signalosome;0.00807530876011769!GO:0030127;COPII vesicle coat;0.00811362807155!GO:0012507;ER to Golgi transport vesicle membrane;0.00811362807155!GO:0050790;regulation of catalytic activity;0.00863720428986453!GO:0031418;L-ascorbic acid binding;0.00885524725427808!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00892995609906941!GO:0007040;lysosome organization and biogenesis;0.00893080915084861!GO:0005684;U2-dependent spliceosome;0.00905570851322222!GO:0005765;lysosomal membrane;0.00906503546618395!GO:0018196;peptidyl-asparagine modification;0.00923532784534265!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00923532784534265!GO:0030308;negative regulation of cell growth;0.00936993197548507!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00989277211192418!GO:0005862;muscle thin filament tropomyosin;0.0101052370025767!GO:0045792;negative regulation of cell size;0.0103445525332951!GO:0008033;tRNA processing;0.0106157483044957!GO:0003746;translation elongation factor activity;0.0107841642641085!GO:0051329;interphase of mitotic cell cycle;0.0108869977902593!GO:0051540;metal cluster binding;0.0109120441060115!GO:0051536;iron-sulfur cluster binding;0.0109120441060115!GO:0006950;response to stress;0.0111474821648896!GO:0006519;amino acid and derivative metabolic process;0.0114217764037532!GO:0005869;dynactin complex;0.0115397427886921!GO:0006629;lipid metabolic process;0.0117123183655409!GO:0006650;glycerophospholipid metabolic process;0.0117950091181141!GO:0044427;chromosomal part;0.0119388151851406!GO:0044452;nucleolar part;0.0119388151851406!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0120222860550669!GO:0032940;secretion by cell;0.0120451399206534!GO:0006260;DNA replication;0.0123242283956572!GO:0009967;positive regulation of signal transduction;0.0123341926893685!GO:0048487;beta-tubulin binding;0.0123696375188541!GO:0051287;NAD binding;0.0123696375188541!GO:0016272;prefoldin complex;0.0123777774005916!GO:0006497;protein amino acid lipidation;0.0125128480182398!GO:0051301;cell division;0.0128805108814194!GO:0000030;mannosyltransferase activity;0.0130636787741708!GO:0006695;cholesterol biosynthetic process;0.0135942928154717!GO:0031301;integral to organelle membrane;0.0136346205247436!GO:0051539;4 iron, 4 sulfur cluster binding;0.0136692805464968!GO:0035257;nuclear hormone receptor binding;0.0136714773095837!GO:0006096;glycolysis;0.0141405810705835!GO:0048500;signal recognition particle;0.0149090048672891!GO:0006506;GPI anchor biosynthetic process;0.0153819752066184!GO:0008154;actin polymerization and/or depolymerization;0.0155777187172903!GO:0018193;peptidyl-amino acid modification;0.0155891730159965!GO:0051168;nuclear export;0.0156242047981557!GO:0005694;chromosome;0.0161877854620973!GO:0043022;ribosome binding;0.0163862506941515!GO:0005758;mitochondrial intermembrane space;0.0164208925486804!GO:0006417;regulation of translation;0.0166938341757676!GO:0001666;response to hypoxia;0.0169577859263688!GO:0031543;peptidyl-proline dioxygenase activity;0.0170048464483977!GO:0043488;regulation of mRNA stability;0.0173338764460798!GO:0043487;regulation of RNA stability;0.0173338764460798!GO:0005813;centrosome;0.01751661819074!GO:0045941;positive regulation of transcription;0.0175265463597838!GO:0051252;regulation of RNA metabolic process;0.0175265463597838!GO:0009889;regulation of biosynthetic process;0.0180478095402856!GO:0007010;cytoskeleton organization and biogenesis;0.0181780821185018!GO:0046365;monosaccharide catabolic process;0.0187674915507774!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0188124229832756!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0189069699525852!GO:0006740;NADPH regeneration;0.0193370292876!GO:0006098;pentose-phosphate shunt;0.0193370292876!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0194122852219909!GO:0019206;nucleoside kinase activity;0.0197887582257707!GO:0006643;membrane lipid metabolic process;0.0197887582257707!GO:0005832;chaperonin-containing T-complex;0.0201609722858808!GO:0022403;cell cycle phase;0.0202030089685556!GO:0051325;interphase;0.0205070733831394!GO:0030503;regulation of cell redox homeostasis;0.02067254370019!GO:0043068;positive regulation of programmed cell death;0.0207126195036372!GO:0043065;positive regulation of apoptosis;0.0208072316217813!GO:0000096;sulfur amino acid metabolic process;0.0213640936743589!GO:0006505;GPI anchor metabolic process;0.0216867152415803!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0222880190973631!GO:0030384;phosphoinositide metabolic process;0.0228134178021997!GO:0019798;procollagen-proline dioxygenase activity;0.0230092463542046!GO:0035035;histone acetyltransferase binding;0.0231512036129916!GO:0030041;actin filament polymerization;0.0233095469704302!GO:0000786;nucleosome;0.0233795313740541!GO:0016197;endosome transport;0.0240462188816675!GO:0000287;magnesium ion binding;0.0241303404536202!GO:0005100;Rho GTPase activator activity;0.0245719579608665!GO:0051098;regulation of binding;0.024754260701853!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.024754260701853!GO:0000059;protein import into nucleus, docking;0.0249803080601569!GO:0045893;positive regulation of transcription, DNA-dependent;0.0257954592025132!GO:0031529;ruffle organization and biogenesis;0.0264182781907693!GO:0003711;transcription elongation regulator activity;0.0264182781907693!GO:0035258;steroid hormone receptor binding;0.0264799538755487!GO:0019320;hexose catabolic process;0.0264996619809287!GO:0008538;proteasome activator activity;0.0272209859679067!GO:0050178;phenylpyruvate tautomerase activity;0.0274954362435509!GO:0030128;clathrin coat of endocytic vesicle;0.0280889829300638!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0280889829300638!GO:0030122;AP-2 adaptor complex;0.0280889829300638!GO:0001726;ruffle;0.0289891859972963!GO:0031272;regulation of pseudopodium formation;0.0289891859972963!GO:0031269;pseudopodium formation;0.0289891859972963!GO:0031344;regulation of cell projection organization and biogenesis;0.0289891859972963!GO:0031268;pseudopodium organization and biogenesis;0.0289891859972963!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0289891859972963!GO:0031274;positive regulation of pseudopodium formation;0.0289891859972963!GO:0007021;tubulin folding;0.0290489389781074!GO:0031970;organelle envelope lumen;0.0291443055920486!GO:0008637;apoptotic mitochondrial changes;0.0294700411350666!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0295242647764487!GO:0006308;DNA catabolic process;0.029614765914664!GO:0031326;regulation of cellular biosynthetic process;0.0301466081878266!GO:0003729;mRNA binding;0.0301466081878266!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0310239049078507!GO:0042158;lipoprotein biosynthetic process;0.031143247787164!GO:0005096;GTPase activator activity;0.0312497506047238!GO:0000209;protein polyubiquitination;0.0312823940441405!GO:0007030;Golgi organization and biogenesis;0.0318196897293011!GO:0007242;intracellular signaling cascade;0.0321155013492635!GO:0048144;fibroblast proliferation;0.0324307035141462!GO:0048145;regulation of fibroblast proliferation;0.0324307035141462!GO:0008312;7S RNA binding;0.0325715037984362!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.032999059851081!GO:0045047;protein targeting to ER;0.032999059851081!GO:0003756;protein disulfide isomerase activity;0.0331156769232086!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0331156769232086!GO:0005815;microtubule organizing center;0.0331156769232086!GO:0006892;post-Golgi vesicle-mediated transport;0.033741679916711!GO:0005092;GDP-dissociation inhibitor activity;0.0338155862498307!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0338508573451054!GO:0010257;NADH dehydrogenase complex assembly;0.0338508573451054!GO:0033108;mitochondrial respiratory chain complex assembly;0.0338508573451054!GO:0006289;nucleotide-excision repair;0.0339233973931768!GO:0006790;sulfur metabolic process;0.0340250078813579!GO:0051128;regulation of cellular component organization and biogenesis;0.0341166716665995!GO:0006403;RNA localization;0.0341166716665995!GO:0000339;RNA cap binding;0.036501764622463!GO:0050811;GABA receptor binding;0.0370308949345212!GO:0051059;NF-kappaB binding;0.0370308949345212!GO:0050657;nucleic acid transport;0.0381454939184092!GO:0051236;establishment of RNA localization;0.0381454939184092!GO:0050658;RNA transport;0.0381454939184092!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0382473821503303!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0384032913639207!GO:0045926;negative regulation of growth;0.0384967921401271!GO:0046822;regulation of nucleocytoplasmic transport;0.0387082886198931!GO:0046164;alcohol catabolic process;0.0387286700495948!GO:0016125;sterol metabolic process;0.0398990134447014!GO:0030433;ER-associated protein catabolic process;0.0402513905386642!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0402513905386642!GO:0007050;cell cycle arrest;0.0405927308423822!GO:0006458;'de novo' protein folding;0.0415834448143413!GO:0051084;'de novo' posttranslational protein folding;0.0415834448143413!GO:0045334;clathrin-coated endocytic vesicle;0.0416490675605894!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.042430177967311!GO:0030032;lamellipodium biogenesis;0.0428235667013895!GO:0006984;ER-nuclear signaling pathway;0.0428235667013895!GO:0007265;Ras protein signal transduction;0.0437067788594993!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0439618436357701!GO:0006749;glutathione metabolic process;0.0442313146974856!GO:0005099;Ras GTPase activator activity;0.0451428539266902!GO:0006401;RNA catabolic process;0.0451428539266902!GO:0006354;RNA elongation;0.04524738653226!GO:0006518;peptide metabolic process;0.0461629450383062!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0461629450383062!GO:0006352;transcription initiation;0.0462611672076888!GO:0000082;G1/S transition of mitotic cell cycle;0.0465018136690251!GO:0030911;TPR domain binding;0.0466256199579484!GO:0016481;negative regulation of transcription;0.0467436610190145!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.04680414999281!GO:0016860;intramolecular oxidoreductase activity;0.0471272189587268!GO:0001516;prostaglandin biosynthetic process;0.0471272189587268!GO:0046457;prostanoid biosynthetic process;0.0471272189587268!GO:0051101;regulation of DNA binding;0.0471272189587268!GO:0030145;manganese ion binding;0.0471272189587268!GO:0006607;NLS-bearing substrate import into nucleus;0.0474977668267891!GO:0008147;structural constituent of bone;0.0483120286606335!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0491622017294266!GO:0008629;induction of apoptosis by intracellular signals;0.0491622017294266!GO:0009303;rRNA transcription;0.0496226603598488!GO:0016363;nuclear matrix;0.0496829439365751!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0497610032819766
|sample_id=11363
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=coronary artery
|top_motifs=PPARG:2.00824986977;GLI1..3:1.58833419998;GTF2A1,2:1.48506982573;POU3F1..4:1.40899676245;ZIC1..3:1.22472631874;CRX:1.2003623937;HES1:1.19239473146;IKZF1:1.18288618494;ALX4:1.1460542915;ZBTB6:1.14604098197;ONECUT1,2:1.11144269368;EBF1:1.09359667127;NR5A1,2:1.05776992243;HMX1:1.0324530927;HOXA9_MEIS1:1.00888197739;ZNF238:1.00645620757;ZNF423:0.92980130128;LHX3,4:0.898736611028;NKX2-2,8:0.881673758539;ATF6:0.870707647081;HIF1A:0.869793792319;TLX1..3_NFIC{dimer}:0.830919623217;AR:0.817825917466;GZF1:0.803004067233;NKX3-1:0.783728318456;XBP1:0.780912963637;TFAP4:0.778961291903;NFE2L1:0.778544439065;MAFB:0.754738868945;GCM1,2:0.717445931316;POU6F1:0.698884629279;TBP:0.6842316743;PAX1,9:0.681031033557;RXR{A,B,G}:0.667555159477;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.653886127386;NR3C1:0.584116150435;SRF:0.547205219102;STAT5{A,B}:0.546998607886;SMAD1..7,9:0.528123822873;TEAD1:0.524760086517;TP53:0.521041648976;HOX{A5,B5}:0.514537707447;ZNF148:0.512515795756;TFAP2{A,C}:0.510851340479;TFCP2:0.46733832546;UFEwm:0.459831950354;FOX{I1,J2}:0.457214997038;TBX4,5:0.451933144249;REST:0.436244901436;TEF:0.395115162648;NANOG:0.387983252737;NKX3-2:0.387121687181;NFE2L2:0.382749279634;CDC5L:0.377049553124;bHLH_family:0.373768707652;FOSL2:0.366607718156;HOX{A6,A7,B6,B7}:0.353072620047;RXRA_VDR{dimer}:0.347441873629;LMO2:0.281972773709;TAL1_TCF{3,4,12}:0.27963423489;LEF1_TCF7_TCF7L1,2:0.277127514453;NR6A1:0.272615133999;HLF:0.24560158801;ESRRA:0.238704980857;PBX1:0.230370847097;GATA6:0.219253835161;NANOG{mouse}:0.210304893999;EN1,2:0.207499918598;POU2F1..3:0.20406027601;NHLH1,2:0.193832600186;BACH2:0.175310067581;HNF1A:0.158996741939;HIC1:0.141773719218;AIRE:0.141471965207;FOS_FOS{B,L1}_JUN{B,D}:0.108295642245;TLX2:0.106152816363;NFATC1..3:0.0965736366788;MYBL2:0.0939007696207;GTF2I:0.0769706638324;SPZ1:0.0598795113573;KLF4:0.0578979955486;PAX5:0.0285260047135;HAND1,2:0.0218982211304;GFI1B:0.0170649636795;FOXL1:-0.00923709451954;MYFfamily:-0.0110147010029;MEF2{A,B,C,D}:-0.0120054149059;ESR1:-0.0205118464982;POU1F1:-0.0378364816847;SOX{8,9,10}:-0.0389548034082;STAT2,4,6:-0.039786116222;ARID5B:-0.0465711201347;MYOD1:-0.0478572789981;HBP1_HMGB_SSRP1_UBTF:-0.0499564518211;JUN:-0.065272056137;FOXQ1:-0.0707675930997;SOX17:-0.0814989862209;MTE{core}:-0.102226109411;ELK1,4_GABP{A,B1}:-0.110940332431;HMGA1,2:-0.112188266816;RUNX1..3:-0.114347275671;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.126452471306;SOX2:-0.128726446052;HSF1,2:-0.153332558553;NFKB1_REL_RELA:-0.159098353232;XCPE1{core}:-0.188501428722;NFE2:-0.19261625059;ALX1:-0.195638329066;ZEB1:-0.218927102556;PAX8:-0.226134223513;TOPORS:-0.239177924838;CEBPA,B_DDIT3:-0.257649694596;ZBTB16:-0.268243831335;ATF2:-0.268442141619;MTF1:-0.274602125261;VSX1,2:-0.28285586394;TGIF1:-0.296447662746;YY1:-0.305160064647;HOX{A4,D4}:-0.322240810274;PAX6:-0.323383642608;SPIB:-0.32565088371;ETS1,2:-0.352003452926;SNAI1..3:-0.37466152496;PAX2:-0.383303160091;TFAP2B:-0.384072445011;RFX1:-0.395774365387;NFIX:-0.397219556222;ZNF143:-0.410961326583;PITX1..3:-0.413417807446;NFIL3:-0.442330225339;SOX5:-0.445384390662;FOXA2:-0.451297145371;NKX2-3_NKX2-5:-0.452390319604;HNF4A_NR2F1,2:-0.474125560621;OCT4_SOX2{dimer}:-0.499286941463;GATA4:-0.499731128278;PRRX1,2:-0.509709166886;MAZ:-0.51063979183;FOX{F1,F2,J1}:-0.520795638082;T:-0.523545446316;SPI1:-0.534853054037;ZFP161:-0.541358994451;EVI1:-0.548444221522;ADNP_IRX_SIX_ZHX:-0.548950836809;RREB1:-0.566849598594;PAX3,7:-0.573472969217;AHR_ARNT_ARNT2:-0.580985517003;NR1H4:-0.589189722246;DMAP1_NCOR{1,2}_SMARC:-0.593320250814;FOXM1:-0.605787002913;ELF1,2,4:-0.613124245241;SP1:-0.625535320243;PATZ1:-0.651071586837;CUX2:-0.652264525092;MED-1{core}:-0.678844000059;MZF1:-0.706784583977;PDX1:-0.714337928128;MYB:-0.734262163798;CDX1,2,4:-0.735670642117;EGR1..3:-0.740689839762;PRDM1:-0.758283772113;RORA:-0.768267460529;EP300:-0.784130835306;NRF1:-0.787635559024;ATF4:-0.794715232267;FOX{D1,D2}:-0.814091910169;IKZF2:-0.826108374;FOXO1,3,4:-0.828756151312;FOXN1:-0.85471022769;RFX2..5_RFXANK_RFXAP:-0.924059599892;ATF5_CREB3:-0.925920957517;IRF1,2:-0.944188732132;POU5F1:-0.981053511574;PAX4:-1.00466326411;ZNF384:-1.00938570399;CREB1:-1.01235419038;DBP:-1.01252345297;IRF7:-1.03856048311;GFI1:-1.1733606594;NFY{A,B,C}:-1.25296271887;E2F1..5:-1.27793247042;FOXP3:-1.31709973307;FOXP1:-1.39661550863;NKX6-1,2:-1.41215775573;SREBF1,2:-1.47447584857;BPTF:-1.50379103346;BREu{core}:-1.55101837718;TFDP1:-1.65302976465;RBPJ:-1.70801181629;FOXD3:-1.80847733231;NKX2-1,4:-1.91566474243;STAT1,3:-2.63105126998
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11363-117I4;search_select_hide=table117:FF:11363-117I4
}}
}}

Latest revision as of 17:55, 4 June 2020

Name:Smooth Muscle Cells - Coronary Artery, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11987
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecoronary artery
dev stage51 years old adult
sexmale
age51
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1369
catalog numberCA350-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004755
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11987 CAGE DRX008487 DRR009359
Accession ID Hg19

Library idBAMCTSS
CNhs11987 DRZ000784 DRZ002169
Accession ID Hg38

Library idBAMCTSS
CNhs11987 DRZ012134 DRZ013519
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004755
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10012.GAGTGG sRNA-Seq DRX037201 DRR041567
Accession ID Hg19

Library idBAMCTSS
SRhi10012.GAGTGG DRZ007209


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0722
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.401
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0689
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.357
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.135
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.375
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed1.099
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte1.207
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.143
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.00682
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.378
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.412
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.412
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic1.136
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.412
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.412
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11987

Jaspar motifP-value
MA0002.20.226
MA0003.10.199
MA0004.10.667
MA0006.10.324
MA0007.10.146
MA0009.10.411
MA0014.10.981
MA0017.10.163
MA0018.20.00359
MA0019.10.936
MA0024.15.81734e-6
MA0025.10.122
MA0027.10.645
MA0028.10.33
MA0029.10.827
MA0030.10.125
MA0031.10.0321
MA0035.20.507
MA0038.10.0173
MA0039.20.599
MA0040.10.732
MA0041.10.232
MA0042.10.718
MA0043.10.00421
MA0046.10.52
MA0047.20.483
MA0048.10.533
MA0050.11.89805e-4
MA0051.10.0457
MA0052.10.958
MA0055.10.957
MA0057.10.0881
MA0058.10.553
MA0059.10.0832
MA0060.12.67747e-5
MA0061.10.466
MA0062.20.032
MA0065.20.0173
MA0066.10.0715
MA0067.10.217
MA0068.15.41447e-4
MA0069.10.434
MA0070.10.421
MA0071.10.202
MA0072.10.37
MA0073.10.565
MA0074.10.339
MA0076.10.126
MA0077.10.38
MA0078.10.215
MA0079.20.692
MA0080.29.47596e-5
MA0081.10.334
MA0083.10.146
MA0084.10.583
MA0087.10.937
MA0088.10.338
MA0090.10.0381
MA0091.10.0333
MA0092.10.095
MA0093.10.582
MA0099.22.46901e-4
MA0100.10.149
MA0101.10.437
MA0102.20.0393
MA0103.10.589
MA0104.20.975
MA0105.10.0665
MA0106.10.352
MA0107.10.687
MA0108.20.0514
MA0111.10.321
MA0112.29.37095e-4
MA0113.10.433
MA0114.10.212
MA0115.10.691
MA0116.10.0301
MA0117.10.722
MA0119.10.00347
MA0122.10.402
MA0124.10.974
MA0125.10.372
MA0131.10.336
MA0135.10.682
MA0136.10.00116
MA0137.20.0597
MA0138.20.0565
MA0139.10.39
MA0140.10.559
MA0141.10.039
MA0142.10.161
MA0143.10.834
MA0144.10.733
MA0145.10.0699
MA0146.10.184
MA0147.10.612
MA0148.10.227
MA0149.10.112
MA0150.10.26
MA0152.10.879
MA0153.10.81
MA0154.10.07
MA0155.10.112
MA0156.10.0625
MA0157.10.504
MA0159.10.0218
MA0160.10.219
MA0162.10.0709
MA0163.17.15597e-5
MA0164.10.517
MA0258.10.00555
MA0259.10.726



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11987

Novel motifP-value
10.104
100.801
1000.891
1010.704
1020.765
1030.161
1040.364
1050.966
1060.011
1070.0524
1080.304
1090.0987
110.0452
1100.305
1110.878
1120.259
1130.225
1140.0296
1150.299
1160.149
1170.313
1180.585
1190.167
120.912
1200.242
1210.648
1221
1230.909
1240.891
1250.116
1260.709
1270.0459
1280.0695
1290.575
130.536
1300.512
1310.161
1320.87
1330.756
1340.841
1350.413
1360.953
1370.926
1380.384
1390.0126
140.873
1400.69
1410.35
1420.708
1430.00346
1440.936
1450.2
1460.353
1470.159
1480.501
1490.056
150.0912
1500.341
1510.288
1520.0354
1530.973
1540.803
1550.543
1560.618
1570.76
1580.346
1590.533
160.0904
1600.0393
1610.308
1620.81
1630.596
1640.231
1650.707
1660.667
1670.366
1680.778
1690.0226
170.22
180.0636
190.0863
20.534
200.621
210.475
220.211
230.106
240.433
250.885
260.0308
270.442
280.467
290.261
30.229
300.847
310.419
322.49955e-4
330.824
340.639
350.301
360.847
370.0537
380.485
390.33
40.453
400.377
410.668
420.434
430.194
440.118
450.514
460.0437
470.121
480.118
490.299
50.495
500.606
510.469
520.623
530.813
540.618
550.174
560.387
570.163
580.942
590.0356
60.764
600.302
610.831
620.432
630.0726
640.164
650.101
660.84
670.227
680.16
690.0325
70.756
700.00631
710.173
720.904
730.0212
740.385
750.331
760.972
770.0203
780.325
790.0471
80.0124
800.919
810.228
820.25
830.344
840.618
850.0288
860.559
870.0828
880.0715
890.0502
90.555
900.669
910.254
920.23
930.806
940.0935
950.225
960.513
970.442
980.17
990.0493



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11987


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000359 (vascular associated smooth muscle cell)
0002592 (smooth muscle cell of the coronary artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0004573 (systemic artery)
0003498 (heart blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0005985 (coronary vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001621 (coronary artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000172 (human smooth muscle cell of coronary artery sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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