FF:11363-117I4: Difference between revisions

Latest revision as of 17:55, 4 June 2020

Name:	Smooth Muscle Cells - Coronary Artery, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs11987
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	coronary artery
dev stage	51 years old adult
sex	male
age	51
cell type	smooth muscle cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1369
catalog number	CA350-R10a
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004755

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11987		CAGE		DRX008487		DRR009359

Accession ID Hg19

Library id		BAM		CTSS
CNhs11987		DRZ000784		DRZ002169

Accession ID Hg38

Library id		BAM		CTSS
CNhs11987		DRZ012134		DRZ013519

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00004755

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10012.GAGTGG		sRNA-Seq		DRX037201		DRR041567

Accession ID Hg19

Library id		BAM		CTSS
SRhi10012.GAGTGG		DRZ007209

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0722
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.401
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0689
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.357
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.135
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.375
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	1.099
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	1.207
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.143
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.00682
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.378
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.412
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.412
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	1.136
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.412
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.412
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11987

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.226
MA0003.1	MA0003.1	0.199
MA0004.1	MA0004.1	0.667
MA0006.1	MA0006.1	0.324
MA0007.1	MA0007.1	0.146
MA0009.1	MA0009.1	0.411
MA0014.1	MA0014.1	0.981
MA0017.1	MA0017.1	0.163
MA0018.2	MA0018.2	0.00359
MA0019.1	MA0019.1	0.936
MA0024.1	MA0024.1	5.81734e-6
MA0025.1	MA0025.1	0.122
MA0027.1	MA0027.1	0.645
MA0028.1	MA0028.1	0.33
MA0029.1	MA0029.1	0.827
MA0030.1	MA0030.1	0.125
MA0031.1	MA0031.1	0.0321
MA0035.2	MA0035.2	0.507
MA0038.1	MA0038.1	0.0173
MA0039.2	MA0039.2	0.599
MA0040.1	MA0040.1	0.732
MA0041.1	MA0041.1	0.232
MA0042.1	MA0042.1	0.718
MA0043.1	MA0043.1	0.00421
MA0046.1	MA0046.1	0.52
MA0047.2	MA0047.2	0.483
MA0048.1	MA0048.1	0.533
MA0050.1	MA0050.1	1.89805e-4
MA0051.1	MA0051.1	0.0457
MA0052.1	MA0052.1	0.958
MA0055.1	MA0055.1	0.957
MA0057.1	MA0057.1	0.0881
MA0058.1	MA0058.1	0.553
MA0059.1	MA0059.1	0.0832
MA0060.1	MA0060.1	2.67747e-5
MA0061.1	MA0061.1	0.466
MA0062.2	MA0062.2	0.032
MA0065.2	MA0065.2	0.0173
MA0066.1	MA0066.1	0.0715
MA0067.1	MA0067.1	0.217
MA0068.1	MA0068.1	5.41447e-4
MA0069.1	MA0069.1	0.434
MA0070.1	MA0070.1	0.421
MA0071.1	MA0071.1	0.202
MA0072.1	MA0072.1	0.37
MA0073.1	MA0073.1	0.565
MA0074.1	MA0074.1	0.339
MA0076.1	MA0076.1	0.126
MA0077.1	MA0077.1	0.38
MA0078.1	MA0078.1	0.215
MA0079.2	MA0079.2	0.692
MA0080.2	MA0080.2	9.47596e-5
MA0081.1	MA0081.1	0.334
MA0083.1	MA0083.1	0.146
MA0084.1	MA0084.1	0.583
MA0087.1	MA0087.1	0.937
MA0088.1	MA0088.1	0.338
MA0090.1	MA0090.1	0.0381
MA0091.1	MA0091.1	0.0333
MA0092.1	MA0092.1	0.095
MA0093.1	MA0093.1	0.582
MA0099.2	MA0099.2	2.46901e-4
MA0100.1	MA0100.1	0.149
MA0101.1	MA0101.1	0.437
MA0102.2	MA0102.2	0.0393
MA0103.1	MA0103.1	0.589
MA0104.2	MA0104.2	0.975
MA0105.1	MA0105.1	0.0665
MA0106.1	MA0106.1	0.352
MA0107.1	MA0107.1	0.687
MA0108.2	MA0108.2	0.0514
MA0111.1	MA0111.1	0.321
MA0112.2	MA0112.2	9.37095e-4
MA0113.1	MA0113.1	0.433
MA0114.1	MA0114.1	0.212
MA0115.1	MA0115.1	0.691
MA0116.1	MA0116.1	0.0301
MA0117.1	MA0117.1	0.722
MA0119.1	MA0119.1	0.00347
MA0122.1	MA0122.1	0.402
MA0124.1	MA0124.1	0.974
MA0125.1	MA0125.1	0.372
MA0131.1	MA0131.1	0.336
MA0135.1	MA0135.1	0.682
MA0136.1	MA0136.1	0.00116
MA0137.2	MA0137.2	0.0597
MA0138.2	MA0138.2	0.0565
MA0139.1	MA0139.1	0.39
MA0140.1	MA0140.1	0.559
MA0141.1	MA0141.1	0.039
MA0142.1	MA0142.1	0.161
MA0143.1	MA0143.1	0.834
MA0144.1	MA0144.1	0.733
MA0145.1	MA0145.1	0.0699
MA0146.1	MA0146.1	0.184
MA0147.1	MA0147.1	0.612
MA0148.1	MA0148.1	0.227
MA0149.1	MA0149.1	0.112
MA0150.1	MA0150.1	0.26
MA0152.1	MA0152.1	0.879
MA0153.1	MA0153.1	0.81
MA0154.1	MA0154.1	0.07
MA0155.1	MA0155.1	0.112
MA0156.1	MA0156.1	0.0625
MA0157.1	MA0157.1	0.504
MA0159.1	MA0159.1	0.0218
MA0160.1	MA0160.1	0.219
MA0162.1	MA0162.1	0.0709
MA0163.1	MA0163.1	7.15597e-5
MA0164.1	MA0164.1	0.517
MA0258.1	MA0258.1	0.00555
MA0259.1	MA0259.1	0.726

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11987

Novel motif	Logo	P-value
1	1	0.104
10	10	0.801
100	100	0.891
101	101	0.704
102	102	0.765
103	103	0.161
104	104	0.364
105	105	0.966
106	106	0.011
107	107	0.0524
108	108	0.304
109	109	0.0987
11	11	0.0452
110	110	0.305
111	111	0.878
112	112	0.259
113	113	0.225
114	114	0.0296
115	115	0.299
116	116	0.149
117	117	0.313
118	118	0.585
119	119	0.167
12	12	0.912
120	120	0.242
121	121	0.648
122	122	1
123	123	0.909
124	124	0.891
125	125	0.116
126	126	0.709
127	127	0.0459
128	128	0.0695
129	129	0.575
13	13	0.536
130	130	0.512
131	131	0.161
132	132	0.87
133	133	0.756
134	134	0.841
135	135	0.413
136	136	0.953
137	137	0.926
138	138	0.384
139	139	0.0126
14	14	0.873
140	140	0.69
141	141	0.35
142	142	0.708
143	143	0.00346
144	144	0.936
145	145	0.2
146	146	0.353
147	147	0.159
148	148	0.501
149	149	0.056
15	15	0.0912
150	150	0.341
151	151	0.288
152	152	0.0354
153	153	0.973
154	154	0.803
155	155	0.543
156	156	0.618
157	157	0.76
158	158	0.346
159	159	0.533
16	16	0.0904
160	160	0.0393
161	161	0.308
162	162	0.81
163	163	0.596
164	164	0.231
165	165	0.707
166	166	0.667
167	167	0.366
168	168	0.778
169	169	0.0226
17	17	0.22
18	18	0.0636
19	19	0.0863
2	2	0.534
20	20	0.621
21	21	0.475
22	22	0.211
23	23	0.106
24	24	0.433
25	25	0.885
26	26	0.0308
27	27	0.442
28	28	0.467
29	29	0.261
3	3	0.229
30	30	0.847
31	31	0.419
32	32	2.49955e-4
33	33	0.824
34	34	0.639
35	35	0.301
36	36	0.847
37	37	0.0537
38	38	0.485
39	39	0.33
4	4	0.453
40	40	0.377
41	41	0.668
42	42	0.434
43	43	0.194
44	44	0.118
45	45	0.514
46	46	0.0437
47	47	0.121
48	48	0.118
49	49	0.299
5	5	0.495
50	50	0.606
51	51	0.469
52	52	0.623
53	53	0.813
54	54	0.618
55	55	0.174
56	56	0.387
57	57	0.163
58	58	0.942
59	59	0.0356
6	6	0.764
60	60	0.302
61	61	0.831
62	62	0.432
63	63	0.0726
64	64	0.164
65	65	0.101
66	66	0.84
67	67	0.227
68	68	0.16
69	69	0.0325
7	7	0.756
70	70	0.00631
71	71	0.173
72	72	0.904
73	73	0.0212
74	74	0.385
75	75	0.331
76	76	0.972
77	77	0.0203
78	78	0.325
79	79	0.0471
8	8	0.0124
80	80	0.919
81	81	0.228
82	82	0.25
83	83	0.344
84	84	0.618
85	85	0.0288
86	86	0.559
87	87	0.0828
88	88	0.0715
89	89	0.0502
9	9	0.555
90	90	0.669
91	91	0.254
92	92	0.23
93	93	0.806
94	94	0.0935
95	95	0.225
96	96	0.513
97	97	0.442
98	98	0.17
99	99	0.0493

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11987

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000172 human smooth muscle cell of coronary artery sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000359 (vascular associated smooth muscle cell)
0002592 (smooth muscle cell of the coronary artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0004573 (systemic artery)
0003498 (heart blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0005985 (coronary vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001621 (coronary artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000172 (human smooth muscle cell of coronary artery sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008379
+|DRA_sample_Accession=CAGE@SAMD00004755
-|accession_numbers=CAGE;DRX008487;DRR009359;DRZ000784;DRZ002169
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004755
+|accession_numbers=CAGE;DRX008487;DRR009359;DRZ000784;DRZ002169;DRZ012134;DRZ013519
+|accession_numbers_RNASeq=sRNA-Seq;DRX037201;DRR041567;DRZ007209
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0010314,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0004573,UBERON:0003498,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0005985,UBERON:0010317,UBERON:0007798,UBERON:0001621,UBERON:0004535,UBERON:0004571,UBERON:0004572,UBERON:0004537,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002494,CL:0000359,CL:0002592
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!1.92!82.43!TCF21;;chr8:55370487..55370503,+!p1@SOX17!1.82!64.99!SOX17;;chr11:65686802..65686818,+!p6@DRAP1!1.69!82.43!DRAP1;;chr11:65687362..65687436,+!p3@DRAP1!1.43!115.71!DRAP1;;chr4:174451370..174451387,-!p1@HAND2!1.42!25.36!HAND2;;chr11:65686732..65686756,+!p2@DRAP1!1.39!96.69!DRAP1;;chr4:174450089..174450153,-!p2@HAND2!1.33!20.61!HAND2;;chr11:46299199..46299233,+!p1@CREB3L1!1.31!98.28!CREB3L1;;chr12:66218923..66218934,+!p14@HMGA2!1.27!17.44!HMGA2;;chr7:35293685..35293718,-!p1@TBX20!1.27!17.44!TBX20;;chr9:35732514..35732530,+!p5@CREB3!1.25!23.78!CREB3;;chr9:35732647..35732678,+!p2@CREB3!1.23!87.18!CREB3;;chr8:11561684..11561751,+!p1@GATA4!1.23!15.85!GATA4;;chr6:34204921..34204939,+!p3@HMGA1!1.21!451.75!HMGA1;;chr16:86544113..86544145,+!p1@FOXF1!1.18!17.44!FOXF1;;chr11:65687243..65687276,+!p8@DRAP1!1.14!17.44!DRAP1;;chr7:1577899..1577943,+!p3@MAFK!1.14!12.68!MAFK;;chr22:38598086..38598105,+!p1@MAFF!1.09!120.47!MAFF;;chr11:65687222..65687240,+!p7@DRAP1!1.08!14.27!DRAP1;;chr15:67458491..67458505,+!p18@SMAD3!1.08!11.10!SMAD3;;chr20:30433396..30433414,-!p1@FOXS1!1.08!11.10!FOXS1;;chr18:19749541..19749557,+!p1@GATA6!1.06!33.29!GATA6;;chr11:46299539..46299620,+!p2@CREB3L1!1.05!17.44!CREB3L1;;chr12:66218836..66218888,+!p1@HMGA2!1.04!93.52!HMGA2;;chr15:67418177..67418204,+!p9@SMAD3!1.02!9.51!SMAD3;;chr4:174451350..174451363,-!p3@HAND2!1.02!9.51!HAND2;;chr2:239756739..239756755,+!p2@TWIST2!1.01!15.85!TWIST2;;chr9:35732592..35732640,+!p1@CREB3!1.00!120.47!CREB3;;chr12:66218598..66218645,+!p2@HMGA2!1.00!42.80!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!1.00!25.36!OSR1;;chr20:6748325..6748352,+!p1@BMP2!0.99!12.68!BMP2;;chr11:65687158..65687216,+!p4@DRAP1!0.98!50.72!DRAP1;;chr15:67418119..67418162,+!p5@SMAD3!0.98!9.51!SMAD3;;chr9:132427972..132428056,+!p1@PRRX2!0.97!11.10!PRRX2;;chr10:8096772..8096787,+!p2@GATA3!0.95!9.51!GATA3;;chr11:65686776..65686787,+!p9@DRAP1!0.95!9.51!DRAP1;;chr19:47523058..47523114,+!p1@NPAS1!0.95!7.93!NPAS1;;chr2:239756671..239756732,+!p1@TWIST2!0.94!25.36!TWIST2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.93!551.62!TAX1BP3;;chr1:8934931..8934947,-!p4@ENO1!0.93!25.36!ENO1;;chr6:1610293..1610310,+!p1@FOXC1!0.93!12.68!FOXC1;;chr11:65667884..65667895,-!p2@FOSL1!0.91!28.53!FOSL1;;chr1:170633262..170633285,+!p3@PRRX1!0.90!7.93!PRRX1;;chr16:86600426..86600441,+!p1@FOXC2!0.89!17.44!FOXC2;;chr6:126070769..126070801,+!p1@HEY2!0.89!7.93!HEY2;;chr4:2263809..2263854,-!p1@MXD4!0.88!267.88!MXD4;;chr2:85981969..85982019,+!p6@ATOH8!0.87!6.34!ATOH8;;chr12:66218904..66218913,+!p11@HMGA2!0.87!6.34!HMGA2;;chr1:170633058..170633084,+!p5@PRRX1!0.87!6.34!PRRX1;;chr9:35732561..35732587,+!p3@CREB3!0.85!26.95!CREB3;;chr3:52001396..52001425,-!p4@PCBP4!0.85!11.10!PCBP4;;chr12:124873357..124873401,-!p1@NCOR2!0.83!71.33!NCOR2;;chr12:53614115..53614154,-!p1@RARG!0.83!33.29!RARG;;chr1:151032922..151032951,+!p2@MLLT11!0.81!9.51!MLLT11;;chr15:83953397..83953425,-!p1@BNC1!0.81!6.34!BNC1;;chr3:52001426..52001447,-!p3@PCBP4!0.80!15.85!PCBP4;;chr7:137686763..137686784,-!p5@CREB3L2!0.80!9.51!CREB3L2;;chr5:321810..321877,+!p1@AHRR!0.79!17.44!AHRR;;chr1:151032860..151032918,+!p1@MLLT11!0.78!64.99!MLLT11;;chr11:65686952..65686975,+!p5@DRAP1!0.78!30.12!DRAP1;;chr15:42749722..42749739,-!p2@ZFP106!0.78!9.51!ZFP106;;chr1:8938709..8938720,-!p3@ENO1!0.77!258.37!ENO1;;chr1:151032739..151032748,+!p6@MLLT11!0.77!6.34!MLLT11;;chr15:37391588..37391604,-!p11@MEIS2!0.76!6.34!MEIS2;;chr15:67458836..67458859,+!p22@SMAD3!0.76!4.76!SMAD3;;chr19:13136057..13136085,+!p11@NFIX!0.76!4.76!NFIX;;chr2:85981073..85981091,+!p5@ATOH8!0.76!4.76!ATOH8;;chr11:65480222..65480241,+!p4@KAT5!0.76!4.76!KAT5;;chr12:66357317..66357328,+!p19@HMGA2!0.76!4.76!HMGA2;;chr7:1577952..1577963,+!p8@MAFK!0.76!4.76!MAFK;;chr6:34204973..34204990,+!p4@HMGA1!0.75!68.16!HMGA1;;chr10:22292591..22292606,-!p2@DNAJC1!0.75!7.93!DNAJC1;;chr2:85980951..85981004,+!p1@ATOH8!0.75!7.93!ATOH8;;chr2:85981222..85981259,+!p2@ATOH8!0.75!7.93!ATOH8;;chr6:34205372..34205412,+!p5@HMGA1!0.74!25.36!HMGA1;;chr19:45261550..45261641,+!p6@BCL3!0.74!7.93!BCL3;;chr1:170633348..170633399,+!p2@PRRX1!0.74!6.34!PRRX1;;chr3:5021268..5021282,+!p4@BHLHE40!0.73!9.51!BHLHE40;;chr17:38498594..38498661,+!p2@RARA!0.72!15.85!RARA;;chr8:145159846..145159889,+!p6@MAF1!0.72!6.34!MAF1;;chr1:170632959..170632987,+!p4@PRRX1!0.72!4.76!PRRX1;;chr19:13106214..13106382,+!p1@NFIX!0.71!109.37!NFIX;;chr17:59477233..59477263,+!p1@TBX2!0.71!14.27!TBX2;;chr19:13134772..13134822,+!p2@NFIX!0.71!6.34!NFIX;;chr3:178789522..178789564,-!p2@ZMAT3!0.70!33.29!ZMAT3;;chr7:44143978..44143989,+!p2@AEBP1!0.70!7.93!AEBP1;;chr7:137686552..137686564,-!p9@CREB3L2!0.70!6.34!CREB3L2;;chr5:92920456..92920488,+!p9@NR2F1!0.70!4.76!NR2F1;;chr2:231084820..231084836,-!p5@SP110!0.70!4.76!SP110;;chr1:23885981..23886002,-!p1@ID3!0.69!786.21!ID3;;chr11:65667846..65667868,-!p1@FOSL1!0.69!118.88!FOSL1;;chr10:8095593..8095625,+!p3@GATA3!0.69!4.76!GATA3;;chr1:151032833..151032850,+!p3@MLLT11!0.68!9.51!MLLT11;;chr10:8096631..8096660,+!p1@GATA3!0.68!4.76!GATA3;;chr22:41697497..41697515,+!p2@ZC3H7B!0.66!11.10!ZC3H7B;;chr20:42543506..42543549,+!p2@TOX2!0.66!9.51!TOX2;;chr6:126240442..126240459,+!p4@NCOA7!0.66!4.76!NCOA7;;chr6:35310363..35310382,+!p3@PPARD!0.64!14.27!PPARD;;chr17:46621101..46621143,-!p7@HOXB2!0.64!4.76!HOXB2;;chr20:39946361..39946379,-!p2@ZHX3!0.63!11.10!ZHX3;;chr1:8924055..8924074,-!p9@ENO1!0.63!6.34!ENO1;;chr16:67881588..67881612,-!p2@CENPT!0.63!4.76!CENPT;;chr19:16435625..16435682,+!p1@KLF2!0.62!122.05!KLF2;;chr8:37553292..37553317,+!p1@ZNF703!0.62!90.35!ZNF703;;chr6:126070748..126070768,+!p2@HEY2!0.62!3.17!HEY2;;chr7:150945865..150945896,-!p4@SMARCD3!0.62!3.17!SMARCD3;;chr8:55370720..55370733,+!p2@SOX17!0.62!3.17!SOX17;;chr15:67458861..67458879,+!p17@SMAD3!0.62!3.17!SMAD3;;chr15:90294087..90294115,-!p1@MESP1!0.62!3.17!MESP1;;chr16:31076332..31076388,-!p3@ZNF668!0.62!3.17!ZNF668;;chr16:86600458..86600461,+!p3@FOXC2!0.62!3.17!FOXC2;;chr16:86600870..86600921,+!p2@FOXC2!0.62!3.17!FOXC2;;chr16:86601088..86601105,+!p5@FOXC2!0.62!3.17!FOXC2;;chr17:40477163..40477183,-!p7@STAT3!0.62!3.17!STAT3;;chr17:46621279..46621297,-!p13@HOXB2!0.62!3.17!HOXB2;;chr19:1863437..1863446,-!p5@KLF16!0.62!3.17!KLF16;;chr9:16705069..16705086,-!p3@BNC2!0.62!3.17!BNC2;;chr9:132427883..132427951,+!p2@PRRX2!0.62!3.17!PRRX2;;chr9:14314066..14314075,-!p11@NFIB!0.62!3.17!NFIB;;chr11:34642612..34642646,+!p1@EHF!0.62!3.17!EHF;;chr11:46299443..46299459,+!p4@CREB3L1!0.62!3.17!CREB3L1;;chr11:62369084..62369093,-!p9@MTA2!0.62!3.17!MTA2;;chr12:66357214..66357233,+!p13@HMGA2!0.62!3.17!HMGA2;;chr13:37494275..37494304,-!p2@SMAD9!0.62!3.17!SMAD9;;chr1:170632723..170632739,+!p8@PRRX1!0.62!3.17!PRRX1;;chr1:2234717..2234744,+!p4@SKI!0.62!3.17!SKI;;chr2:19558327..19558334,-!p2@OSR1!0.62!3.17!OSR1;;chr2:85981027..85981047,+!p8@ATOH8!0.62!3.17!ATOH8;;chr2:85981107..85981120,+!p3@ATOH8!0.62!3.17!ATOH8;;chr3:141087562..141087594,+!p12@ZBTB38!0.62!3.17!ZBTB38;;chr3:25470156..25470227,+!p2@RARB!0.62!3.17!RARB;;chr3:52001374..52001385,-!p6@PCBP4!0.62!3.17!PCBP4;;chr12:66218255..66218304,+!p3@HMGA2!0.61!9.51!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!0.61!4.76!HMGA2;;chr18:19749386..19749404,+!p2@GATA6!0.61!4.76!GATA6;;chr11:65686855..65686946,+!p1@DRAP1!0.60!272.64!DRAP1;;chr3:52001448..52001478,-!p2@PCBP4!0.60!50.72!PCBP4;;chr22:38598057..38598071,+!p3@MAFF!0.60!7.93!MAFF;;chr19:53758058..53758088,-!p2@ZNF677!0.59!11.10!ZNF677;;chr19:58951496..58951539,-!p1@ZNF132!0.59!7.93!ZNF132;;chr8:145159447..145159458,+!p4@MAF1!0.59!7.93!MAF1;;chr17:46622114..46622138,-!p4@HOXB2!0.59!4.76!HOXB2;;chr7:100076744..100076749,-!p8@TSC22D4!0.59!3.17!TSC22D4;;chr2:85980919..85980942,+!p4@ATOH8!0.59!3.17!ATOH8;;chr6:144329384..144329405,-!p1@PLAGL1!0.58!39.63!PLAGL1;;chr12:124873852..124873881,-!p3@NCOR2!0.58!20.61!NCOR2;;chr16:3285119..3285133,-!p2@ZNF200!0.58!6.34!ZNF200;;chr1:151032782..151032801,+!p4@MLLT11!0.58!6.34!MLLT11;;chr8:72756063..72756125,-!p1@MSC!0.58!6.34!MSC;;chr11:65686702..65686715,+!p11@DRAP1!0.58!3.17!DRAP1;;chr16:29819446..29819471,+!p9@MAZ!0.57!9.51!MAZ;;chr16:3185125..3185173,+!p1@ZNF213!0.57!7.93!ZNF213;;chr17:17723626..17723663,-!p4@SREBF1!0.57!6.34!SREBF1;;chr8:145159324..145159333,+!p5@MAF1!0.57!6.34!MAF1;;chr6:10412392..10412409,-!p4@TFAP2A!0.57!3.17!TFAP2A;;chr7:1577111..1577132,+!p4@MAFK!0.57!3.17!MAFK;;chr8:72756637..72756664,-!p3@MSC!0.57!3.17!MSC;;chr16:30407021..30407061,+!p3@ZNF48!0.57!3.17!ZNF48;;chr19:12175596..12175605,+!p4@ZNF844!0.57!3.17!ZNF844;;chr1:23886132..23886156,-!p2@ID3!0.57!3.17!ID3;;chr3:185826286..185826318,-!p5@ETV5!0.57!3.17!ETV5;;chr5:92918919..92918942,+!p1@NR2F1!0.56!14.27!NR2F1;;chr20:42543441..42543497,+!p1@TOX2!0.56!14.27!TOX2;;chr12:48298765..48298783,-!p2@VDR!0.56!6.34!VDR;;chr12:56575310..56575344,-!p3@SMARCC2!0.56!4.76!SMARCC2;;chr3:168864315..168864339,-!p2@MECOM!0.56!4.76!MECOM;;chr4:81105027..81105039,+!p3@PRDM8!0.56!3.17!PRDM8;;chr19:1652555..1652568,-!p2@TCF3!0.55!12.68!TCF3;;chr5:139487608..139487663,+!p3@PURA!0.55!6.34!PURA;;chr1:221052994..221053008,+!p6@HLX!0.55!3.17!HLX;;chr4:81104958..81104981,+!p5@PRDM8!0.55!3.17!PRDM8;;chr6:10415276..10415341,-!p2@TFAP2A!0.54!3.17!TFAP2A;;chr10:44144187..44144201,-!p3@ZNF32!0.54!3.17!ZNF32;;chr11:120107344..120107351,+!p1@POU2F3!0.54!3.17!POU2F3;;chr19:42636586..42636607,-!p1@POU2F2!0.53!7.93!POU2F2;;chr17:42298339..42298361,-!p5@UBTF!0.53!6.34!UBTF;;chr2:185463247..185463263,+!p1@ZNF804A!0.53!4.76!ZNF804A;;chr19:58666441..58666478,-!p2@ZNF329!0.53!4.76!ZNF329;;chr19:38720294..38720348,-!p1@DPF1!0.53!3.17!DPF1;;chr8:72756023..72756055,-!p6@MSC!0.53!3.17!MSC;;chr12:7077134..7077154,-!p3@PHB2!0.53!3.17!PHB2;;chr8:128748308..128748324,+!p2@MYC!0.52!84.01!MYC;;chr6:35310395..35310410,+!p2@PPARD!0.52!11.10!PPARD;;chr10:94449703..94449718,+!p1@HHEX!0.52!11.10!HHEX;;chr19:56652686..56652701,+!p3@ZNF444!0.52!4.76!ZNF444;;chr1:8923998..8924033,-!p8@ENO1!0.52!4.76!ENO1;;chr18:19749517..19749531,+!p3@GATA6!0.52!4.76!GATA6;;chr19:13134457..13134462,+!p5@NFIX!0.52!4.76!NFIX;;ch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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002592;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003498;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
 |ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
 |fonse_cell_line=
@@ Line 40: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor2.CNhs11987.11363-117I4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor2.CNhs11987.11363-117I4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor2.CNhs11987.11363-117I4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor2.CNhs11987.11363-117I4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor2.CNhs11987.11363-117I4.hg38.nobarcode.ctss.bed.gz
 |id=FF:11363-117I4
 |is_a=EFO:0002091;;FF:0000172
 |is_obsolete=
 |library_id=CNhs11987
+|library_id_phase_based=2:CNhs11987
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11363
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.GAGTGG.11363
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11363
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.GAGTGG.11363
 |name=Smooth Muscle Cells - Coronary Artery, donor2
 |namespace=FANTOM5
@@ Line 49: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11987,LSID836,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10012,,,
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@@ Line 65: / Line 82: @@
 |rna_tube_id=117I4
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10012.GAGTGG
 |sample_age=51
 |sample_category=primary cells
@@ Line 88: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11363-117I4;search_select_hide=table117:FF:11363-117I4
 }}

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FF:11363-117I4: Difference between revisions

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Latest revision as of 17:55, 4 June 2020

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