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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00005421
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|accession_numbers_RNASeq=sRNA-Seq;DRX037108;DRR041474;DRZ007116
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|microRNAs=
|microRNAs=
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|microRNAs_nn=
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|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.GAGTGG.11360
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.GAGTGG.11360
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11360
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.GAGTGG.11360
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.GAGTGG.11360
|name=Smooth Muscle Cells - Aortic, donor2
|name=Smooth Muscle Cells - Aortic, donor2
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|profile_rnaseq=
|profile_rnaseq=
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|profile_srnaseq=SRhi10007,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 78: Line 82:
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|sample_category=primary cells
Line 101: Line 106:
|top_motifs=HOX{A5,B5}:1.60120974889;GCM1,2:1.50868766871;GTF2A1,2:1.49402674981;CRX:1.43049391935;TLX1..3_NFIC{dimer}:1.15830587012;HES1:1.15790409083;ZNF238:1.10103792666;SRF:1.07937375309;ONECUT1,2:1.04219395047;POU3F1..4:1.02384424807;HSF1,2:1.01953062714;TAL1_TCF{3,4,12}:0.986410457435;bHLH_family:0.982174244259;ZBTB6:0.952474588504;GLI1..3:0.923442897605;TFCP2:0.922456399588;HAND1,2:0.885526944581;TBP:0.855709066395;NR3C1:0.838020362706;EBF1:0.812641885806;ZNF148:0.799096237025;NKX2-2,8:0.79223586376;TP53:0.780234835491;ZNF423:0.759108700728;NFE2L1:0.754827557757;ALX4:0.750861649041;GZF1:0.679009116564;SMAD1..7,9:0.651011579557;TEAD1:0.638942325187;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.631825437054;PPARG:0.609842276236;MYBL2:0.576096475521;NFE2L2:0.568678379557;HBP1_HMGB_SSRP1_UBTF:0.565388998691;LHX3,4:0.563937441105;IKZF1:0.56070885052;NKX3-2:0.558447096243;GFI1B:0.550837163933;LEF1_TCF7_TCF7L1,2:0.545524233453;ADNP_IRX_SIX_ZHX:0.538707312409;EN1,2:0.521196999439;NHLH1,2:0.491696779361;HOX{A6,A7,B6,B7}:0.475214630154;PAX8:0.469129516626;FOSL2:0.44948349119;BACH2:0.446775321075;HLF:0.434326977905;ZIC1..3:0.430803430726;FOS_FOS{B,L1}_JUN{B,D}:0.429447359071;NFATC1..3:0.417066879549;TFAP4:0.407047317772;REST:0.399593231793;XCPE1{core}:0.398422965546;HIF1A:0.362384592132;TBX4,5:0.342663766536;JUN:0.324140571934;POU2F1..3:0.31474281532;STAT5{A,B}:0.311250313172;SOX17:0.306127765841;HIC1:0.304983481245;POU1F1:0.304308287911;MAFB:0.303249105876;ELK1,4_GABP{A,B1}:0.291489933432;FOXL1:0.272431449555;CDC5L:0.271277363501;PBX1:0.26787007266;ATF6:0.238078732899;GATA6:0.235101646942;FOX{I1,J2}:0.226975450092;KLF4:0.224397347081;HNF1A:0.192178145572;SOX{8,9,10}:0.183003042682;NFE2:0.181478042556;NFIL3:0.162013647583;TFAP2B:0.159067321769;TFAP2{A,C}:0.155245944858;PRRX1,2:0.149733772078;NANOG:0.136314481093;GTF2I:0.133308509541;MTF1:0.114286207764;AR:0.103355390122;HMX1:0.0839410660541;HMGA1,2:0.0715925820013;RXRA_VDR{dimer}:0.0694533907344;TLX2:0.0635424769123;NR5A1,2:0.0634108261666;ESR1:0.0606030956267;MTE{core}:0.0605221935987;PAX5:0.0553666038278;HOX{A4,D4}:0.0363009582973;SP1:0.0354544894446;MEF2{A,B,C,D}:0.0159341150352;ETS1,2:-0.007116641432;CEBPA,B_DDIT3:-0.0202024381717;PRDM1:-0.0511270386142;POU5F1:-0.061199806587;RXR{A,B,G}:-0.0629226183195;LMO2:-0.0763992843655;NFKB1_REL_RELA:-0.0831423959087;XBP1:-0.085718386087;ESRRA:-0.0929357732289;T:-0.0939870951748;ARID5B:-0.0990097686987;NFIX:-0.103556934928;ZNF384:-0.129982485002;UFEwm:-0.141888614737;VSX1,2:-0.148442984826;MZF1:-0.15207692133;HNF4A_NR2F1,2:-0.154836466071;EVI1:-0.15670125516;RUNX1..3:-0.166877836262;STAT2,4,6:-0.171322236646;FOXM1:-0.175200462738;POU6F1:-0.185270184826;RREB1:-0.195144183538;SOX2:-0.195644421538;RFX1:-0.207789177892;ELF1,2,4:-0.230064478809;MYFfamily:-0.23291717728;PAX1,9:-0.234677569786;GATA4:-0.282182373235;SPIB:-0.285406750387;NR1H4:-0.293051092985;PAX2:-0.296422363931;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.296958150634;NR6A1:-0.297424889362;PATZ1:-0.303578968948;HOXA9_MEIS1:-0.312117976727;OCT4_SOX2{dimer}:-0.315389689719;AHR_ARNT_ARNT2:-0.320709967763;FOXQ1:-0.325441394669;TFDP1:-0.340712246038;MYB:-0.349915513202;YY1:-0.368730364058;SPZ1:-0.376405105565;TGIF1:-0.404343631567;SOX5:-0.405997615452;GFI1:-0.407328545165;AIRE:-0.412446846436;MED-1{core}:-0.418659450172;SPI1:-0.429096127847;ZNF143:-0.436113030982;PAX3,7:-0.455224139672;MYOD1:-0.45866974119;MAZ:-0.461286664376;RORA:-0.463736490955;NKX2-3_NKX2-5:-0.472301544631;EP300:-0.513115059991;NRF1:-0.517275469032;PITX1..3:-0.52835257613;ZFP161:-0.536131654821;ZEB1:-0.542506111322;SNAI1..3:-0.558195362978;EGR1..3:-0.565742621687;ATF2:-0.573234025017;FOX{F1,F2,J1}:-0.585774266195;PAX6:-0.585792433569;FOX{D1,D2}:-0.593738039915;DBP:-0.601936233502;NFY{A,B,C}:-0.60487858017;NANOG{mouse}:-0.609753706635;IRF1,2:-0.617737534419;FOXO1,3,4:-0.622944398663;NKX3-1:-0.63029263218;TOPORS:-0.640965203093;ATF5_CREB3:-0.65803938125;FOXA2:-0.700778864669;E2F1..5:-0.712371491595;ALX1:-0.71842341119;TEF:-0.752011297933;IRF7:-0.774758938073;FOXD3:-0.816430335786;SREBF1,2:-0.824997464143;CREB1:-0.880201723042;CUX2:-0.90509788778;DMAP1_NCOR{1,2}_SMARC:-0.913968938645;FOXP3:-0.964089476856;NKX6-1,2:-1.03104709757;CDX1,2,4:-1.0525143482;IKZF2:-1.13262690796;PAX4:-1.1439080548;BREu{core}:-1.14480392396;ATF4:-1.148681955;FOXN1:-1.19494512036;FOXP1:-1.30706533475;RFX2..5_RFXANK_RFXAP:-1.3247221982;RBPJ:-1.35870384626;ZBTB16:-1.39500426479;PDX1:-1.39521994329;NKX2-1,4:-1.46577558969;STAT1,3:-1.70221233155;BPTF:-1.71888164833
|top_motifs=HOX{A5,B5}:1.60120974889;GCM1,2:1.50868766871;GTF2A1,2:1.49402674981;CRX:1.43049391935;TLX1..3_NFIC{dimer}:1.15830587012;HES1:1.15790409083;ZNF238:1.10103792666;SRF:1.07937375309;ONECUT1,2:1.04219395047;POU3F1..4:1.02384424807;HSF1,2:1.01953062714;TAL1_TCF{3,4,12}:0.986410457435;bHLH_family:0.982174244259;ZBTB6:0.952474588504;GLI1..3:0.923442897605;TFCP2:0.922456399588;HAND1,2:0.885526944581;TBP:0.855709066395;NR3C1:0.838020362706;EBF1:0.812641885806;ZNF148:0.799096237025;NKX2-2,8:0.79223586376;TP53:0.780234835491;ZNF423:0.759108700728;NFE2L1:0.754827557757;ALX4:0.750861649041;GZF1:0.679009116564;SMAD1..7,9:0.651011579557;TEAD1:0.638942325187;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.631825437054;PPARG:0.609842276236;MYBL2:0.576096475521;NFE2L2:0.568678379557;HBP1_HMGB_SSRP1_UBTF:0.565388998691;LHX3,4:0.563937441105;IKZF1:0.56070885052;NKX3-2:0.558447096243;GFI1B:0.550837163933;LEF1_TCF7_TCF7L1,2:0.545524233453;ADNP_IRX_SIX_ZHX:0.538707312409;EN1,2:0.521196999439;NHLH1,2:0.491696779361;HOX{A6,A7,B6,B7}:0.475214630154;PAX8:0.469129516626;FOSL2:0.44948349119;BACH2:0.446775321075;HLF:0.434326977905;ZIC1..3:0.430803430726;FOS_FOS{B,L1}_JUN{B,D}:0.429447359071;NFATC1..3:0.417066879549;TFAP4:0.407047317772;REST:0.399593231793;XCPE1{core}:0.398422965546;HIF1A:0.362384592132;TBX4,5:0.342663766536;JUN:0.324140571934;POU2F1..3:0.31474281532;STAT5{A,B}:0.311250313172;SOX17:0.306127765841;HIC1:0.304983481245;POU1F1:0.304308287911;MAFB:0.303249105876;ELK1,4_GABP{A,B1}:0.291489933432;FOXL1:0.272431449555;CDC5L:0.271277363501;PBX1:0.26787007266;ATF6:0.238078732899;GATA6:0.235101646942;FOX{I1,J2}:0.226975450092;KLF4:0.224397347081;HNF1A:0.192178145572;SOX{8,9,10}:0.183003042682;NFE2:0.181478042556;NFIL3:0.162013647583;TFAP2B:0.159067321769;TFAP2{A,C}:0.155245944858;PRRX1,2:0.149733772078;NANOG:0.136314481093;GTF2I:0.133308509541;MTF1:0.114286207764;AR:0.103355390122;HMX1:0.0839410660541;HMGA1,2:0.0715925820013;RXRA_VDR{dimer}:0.0694533907344;TLX2:0.0635424769123;NR5A1,2:0.0634108261666;ESR1:0.0606030956267;MTE{core}:0.0605221935987;PAX5:0.0553666038278;HOX{A4,D4}:0.0363009582973;SP1:0.0354544894446;MEF2{A,B,C,D}:0.0159341150352;ETS1,2:-0.007116641432;CEBPA,B_DDIT3:-0.0202024381717;PRDM1:-0.0511270386142;POU5F1:-0.061199806587;RXR{A,B,G}:-0.0629226183195;LMO2:-0.0763992843655;NFKB1_REL_RELA:-0.0831423959087;XBP1:-0.085718386087;ESRRA:-0.0929357732289;T:-0.0939870951748;ARID5B:-0.0990097686987;NFIX:-0.103556934928;ZNF384:-0.129982485002;UFEwm:-0.141888614737;VSX1,2:-0.148442984826;MZF1:-0.15207692133;HNF4A_NR2F1,2:-0.154836466071;EVI1:-0.15670125516;RUNX1..3:-0.166877836262;STAT2,4,6:-0.171322236646;FOXM1:-0.175200462738;POU6F1:-0.185270184826;RREB1:-0.195144183538;SOX2:-0.195644421538;RFX1:-0.207789177892;ELF1,2,4:-0.230064478809;MYFfamily:-0.23291717728;PAX1,9:-0.234677569786;GATA4:-0.282182373235;SPIB:-0.285406750387;NR1H4:-0.293051092985;PAX2:-0.296422363931;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.296958150634;NR6A1:-0.297424889362;PATZ1:-0.303578968948;HOXA9_MEIS1:-0.312117976727;OCT4_SOX2{dimer}:-0.315389689719;AHR_ARNT_ARNT2:-0.320709967763;FOXQ1:-0.325441394669;TFDP1:-0.340712246038;MYB:-0.349915513202;YY1:-0.368730364058;SPZ1:-0.376405105565;TGIF1:-0.404343631567;SOX5:-0.405997615452;GFI1:-0.407328545165;AIRE:-0.412446846436;MED-1{core}:-0.418659450172;SPI1:-0.429096127847;ZNF143:-0.436113030982;PAX3,7:-0.455224139672;MYOD1:-0.45866974119;MAZ:-0.461286664376;RORA:-0.463736490955;NKX2-3_NKX2-5:-0.472301544631;EP300:-0.513115059991;NRF1:-0.517275469032;PITX1..3:-0.52835257613;ZFP161:-0.536131654821;ZEB1:-0.542506111322;SNAI1..3:-0.558195362978;EGR1..3:-0.565742621687;ATF2:-0.573234025017;FOX{F1,F2,J1}:-0.585774266195;PAX6:-0.585792433569;FOX{D1,D2}:-0.593738039915;DBP:-0.601936233502;NFY{A,B,C}:-0.60487858017;NANOG{mouse}:-0.609753706635;IRF1,2:-0.617737534419;FOXO1,3,4:-0.622944398663;NKX3-1:-0.63029263218;TOPORS:-0.640965203093;ATF5_CREB3:-0.65803938125;FOXA2:-0.700778864669;E2F1..5:-0.712371491595;ALX1:-0.71842341119;TEF:-0.752011297933;IRF7:-0.774758938073;FOXD3:-0.816430335786;SREBF1,2:-0.824997464143;CREB1:-0.880201723042;CUX2:-0.90509788778;DMAP1_NCOR{1,2}_SMARC:-0.913968938645;FOXP3:-0.964089476856;NKX6-1,2:-1.03104709757;CDX1,2,4:-1.0525143482;IKZF2:-1.13262690796;PAX4:-1.1439080548;BREu{core}:-1.14480392396;ATF4:-1.148681955;FOXN1:-1.19494512036;FOXP1:-1.30706533475;RFX2..5_RFXANK_RFXAP:-1.3247221982;RBPJ:-1.35870384626;ZBTB16:-1.39500426479;PDX1:-1.39521994329;NKX2-1,4:-1.46577558969;STAT1,3:-1.70221233155;BPTF:-1.71888164833
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11360-117I1;search_select_hide=table117:FF:11360-117I1
}}
}}

Latest revision as of 17:55, 4 June 2020

Name:Smooth Muscle Cells - Aortic, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11305
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueaorta
dev stage40 years old adult
sexmale
age40
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1347
catalog numberCA354-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005421
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11305 CAGE DRX008469 DRR009341
Accession ID Hg19

Library idBAMCTSS
CNhs11305 DRZ000766 DRZ002151
Accession ID Hg38

Library idBAMCTSS
CNhs11305 DRZ012116 DRZ013501
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005421
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10007.GAGTGG sRNA-Seq DRX037108 DRR041474
Accession ID Hg19

Library idBAMCTSS
SRhi10007.GAGTGG DRZ007116


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.207
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.221
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.185
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.042
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.426
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.441
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.185
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.26
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.117
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.185
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0089
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.315
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.406
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.801
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.185
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.185
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11305

Jaspar motifP-value
MA0002.20.14
MA0003.10.195
MA0004.10.85
MA0006.10.266
MA0007.10.368
MA0009.10.695
MA0014.10.872
MA0017.10.329
MA0018.20.00104
MA0019.10.453
MA0024.13.14441e-5
MA0025.10.376
MA0027.10.751
MA0028.10.685
MA0029.10.265
MA0030.10.208
MA0031.10.0343
MA0035.20.227
MA0038.10.225
MA0039.20.385
MA0040.10.507
MA0041.10.442
MA0042.10.915
MA0043.10.0016
MA0046.10.353
MA0047.20.978
MA0048.10.913
MA0050.16.66787e-5
MA0051.10.172
MA0052.10.931
MA0055.10.417
MA0057.10.11
MA0058.10.95
MA0059.10.0817
MA0060.10.0516
MA0061.10.376
MA0062.20.402
MA0065.20.232
MA0066.10.307
MA0067.10.0161
MA0068.10.159
MA0069.10.586
MA0070.10.721
MA0071.10.722
MA0072.10.495
MA0073.10.472
MA0074.10.507
MA0076.10.466
MA0077.10.145
MA0078.10.194
MA0079.20.764
MA0080.20.154
MA0081.10.725
MA0083.11.00625e-4
MA0084.10.577
MA0087.10.571
MA0088.10.466
MA0090.10.0102
MA0091.10.0446
MA0092.10.0584
MA0093.10.822
MA0099.21.56659e-17
MA0100.10.155
MA0101.10.755
MA0102.20.00615
MA0103.10.422
MA0104.20.722
MA0105.10.282
MA0106.10.126
MA0107.10.456
MA0108.27.41789e-7
MA0111.10.0521
MA0112.20.00455
MA0113.10.195
MA0114.10.383
MA0115.10.943
MA0116.10.13
MA0117.10.402
MA0119.10.055
MA0122.10.63
MA0124.10.502
MA0125.10.704
MA0131.10.311
MA0135.10.954
MA0136.10.465
MA0137.20.353
MA0138.20.872
MA0139.10.751
MA0140.10.111
MA0141.10.538
MA0142.10.55
MA0143.10.777
MA0144.10.577
MA0145.10.0803
MA0146.10.158
MA0147.10.751
MA0148.10.62
MA0149.10.404
MA0150.10.0204
MA0152.10.474
MA0153.10.595
MA0154.10.125
MA0155.10.0975
MA0156.10.731
MA0157.10.391
MA0159.10.0771
MA0160.10.562
MA0162.10.069
MA0163.10.036
MA0164.10.565
MA0258.10.122
MA0259.10.989



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11305

Novel motifP-value
10.426
100.4
1000.938
1010.993
1020.983
1030.517
1040.256
1050.193
1060.025
1070.0319
1080.477
1090.0612
110.0939
1100.333
1110.502
1120.38
1130.302
1140.141
1150.97
1160.148
1170.963
1180.931
1190.175
120.627
1200.202
1210.685
1220.531
1230.0776
1240.71
1250.928
1260.7
1270.184
1280.146
1290.815
130.612
1300.164
1310.257
1320.935
1330.568
1340.151
1350.152
1360.585
1370.774
1380.826
1390.519
140.999
1400.599
1410.387
1420.96
1430.0082
1440.79
1450.117
1460.433
1470.0977
1480.44
1490.1
150.376
1500.204
1510.291
1520.0253
1530.883
1540.489
1550.0406
1560.929
1570.795
1580.169
1590.527
160.268
1600.0705
1610.444
1620.923
1631
1640.692
1650.64
1660.441
1670.821
1680.297
1690.0452
170.0517
180.0472
190.0911
20.406
200.315
210.575
220.137
230.136
240.157
250.498
260.193
270.452
280.293
290.519
30.459
300.164
310.547
320.0344
330.938
340.347
350.694
360.799
370.131
380.37
390.312
40.458
400.145
410.319
420.519
430.257
440.937
450.191
460.138
470.454
480.166
490.396
50.663
500.411
510.865
520.312
530.833
540.531
550.134
560.423
570.376
580.893
590.103
60.756
600.351
610.846
620.951
630.158
640.287
650.117
660.365
670.695
680.163
690.376
70.808
700.0436
710.177
720.667
730.00854
740.905
750.538
760.82
770.0164
780.722
790.3
80.0358
800.221
810.354
820.385
830.524
840.885
850.146
860.836
870.08
880.0903
890.0262
90.256
900.878
910.189
920.535
930.685
940.438
950.299
960.797
970.16
980.729
990.0167



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11305


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000168 (human aortic smooth muscle cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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