FF:11353-117H3: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005579 | |||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005579 | |||
|accession_numbers=CAGE;DRX008390;DRR009262;DRZ000687;DRZ002072;DRZ012037;DRZ013422 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037030;DRR041396;DRZ007038 | |||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000062 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000062 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:96654133..96654150,-!p1@DLX5!1.91!79.59!DLX5;;chr4:57522513..57522548,-!p4@HOPX!1.85!70.50!HOPX;;chr4:57522598..57522664,-!p3@HOPX!1.76!56.85!HOPX;;chr4:57522674..57522699,-!p5@HOPX!1.57!36.39!HOPX;;chr12:54378923..54378966,+!p1@HOXC10!1.55!34.11!HOXC10;;chr9:132427972..132428056,+!p1@PRRX2!1.54!43.21!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.49!29.56!PRRX2;;chr7:44143978..44143989,+!p2@AEBP1!1.46!50.03!AEBP1;;chr1:170633348..170633399,+!p2@PRRX1!1.45!36.39!PRRX1;;chr7:44143997..44144008,+!p3@AEBP1!1.45!34.11!AEBP1;;chr12:54393880..54393962,+!p1@HOXC9!1.45!27.29!HOXC9;;chr11:46299539..46299620,+!p2@CREB3L1!1.41!40.93!CREB3L1;;chr6:45296048..45296082,+!p1@RUNX2!1.40!27.29!RUNX2;;chr19:13134772..13134822,+!p2@NFIX!1.39!34.11!NFIX;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.38!22.74!HOXC5;;chr7:19157248..19157268,-!p1@TWIST1!1.37!61.40!TWIST1;;chr11:46299199..46299233,+!p1@CREB3L1!1.31!97.79!CREB3L1;;chr1:119530636..119530653,-!p2@TBX15!1.28!18.19!TBX15;;chr16:86600426..86600441,+!p1@FOXC2!1.25!40.93!FOXC2;;chr12:10875658..10875708,-!p2@CSDA!1.23!36.39!CSDA;;chr12:54379029..54379057,+!p2@HOXC10!1.23!15.92!HOXC10;;chrX:106960180..106960197,-!p2@TSC22D3!1.22!59.13!TSC22D3;;chr19:18391615..18391637,-!p5@JUND!1.22!20.47!JUND;;chr15:42749722..42749739,-!p2@ZFP106!1.21!27.29!ZFP106;;chr19:18391708..18391737,-!p7@JUND!1.20!22.74!JUND;;chr1:170632285..170632309,+!p1@PRRX1!1.18!15.92!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!1.17!304.73!AEBP1;;chr14:61116183..61116208,-!p1@SIX1!1.17!52.30!SIX1;;chr12:10875548..10875563,-!p13@CSDA!1.17!13.64!CSDA;;chr12:54394309..54394336,+!p2@HOXC9!1.17!13.64!HOXC9;;chr7:27196217..27196246,-!p2@HOXA7!1.17!13.64!HOXA7;;chr7:27213872..27213886,-!p4@HOXA10!1.17!13.64!HOXA10;;chr7:27213893..27213954,-!p1@HOXA10!1.17!13.64!HOXA10;;chr7:96654026..96654061,-!p2@DLX5!1.17!13.64!DLX5;;chr19:7584204..7584218,+!p9@ZNF358!1.17!13.64!ZNF358;;chr19:13135914..13135942,+!p19@NFIX!1.17!13.64!NFIX;;chr5:72744594..72744609,-!p1@FOXD1!1.15!59.13!FOXD1;;chr12:10875768..10875808,-!p3@CSDA!1.11!18.19!CSDA;;chr4:57522166..57522260,-!p2@HOPX!1.11!13.64!HOPX;;chr12:10875612..10875631,-!p9@CSDA!1.09!13.64!CSDA;;chr2:45236540..45236577,-!p1@SIX2!1.09!11.37!SIX2;;chr17:46132044..46132080,+!p4@NFE2L1!1.09!11.37!NFE2L1;;chr7:27192185..27192209,-!p1@HOXA3!1.09!11.37!HOXA3;;chr7:96635178..96635181,+!p1@DLX6!1.09!11.37!DLX6;;chr19:46801639..46801699,+!p1@HIF3A!1.09!11.37!HIF3A;;chr1:170632477..170632506,+!p6@PRRX1!1.09!11.37!PRRX1;;chr17:59477233..59477263,+!p1@TBX2!1.08!34.11!TBX2;;chr16:54320101..54320125,-!p4@IRX3!1.08!15.92!IRX3;;chr20:48807648..48807671,+!p9@CEBPB!1.08!15.92!CEBPB;;chr6:1610293..1610310,+!p1@FOXC1!1.07!18.19!FOXC1;;chr5:92919375..92919438,+!p6@NR2F1!1.06!11.37!NR2F1;;chr5:92919100..92919135,+!p3@NR2F1!1.01!11.37!NR2F1;;chr20:48807548..48807572,+!p14@CEBPB!1.01!11.37!CEBPB;;chr11:46333934..46333963,+!p5@CREB3L1!1.00!9.10!CREB3L1;;chr2:176994408..176994492,+!p1@HOXD8!1.00!9.10!HOXD8;;chr7:27196267..27196311,-!p1@HOXA7!1.00!9.10!HOXA7;;chr7:27205136..27205164,-!p1@HOXA9!1.00!9.10!HOXA9;;chr19:56111680..56111716,+!p1@ZNF524!0.99!34.11!ZNF524;;chr14:24837368..24837401,+!p1@NFATC4!0.98!20.47!NFATC4;;chr16:79634595..79634620,-!p2@MAF!0.98!15.92!MAF;;chr17:59477275..59477286,+!p3@TBX2!0.98!11.37!TBX2;;chrX:106960285..106960299,-!p1@TSC22D3!0.97!229.68!TSC22D3;;chr11:46299186..46299195,+!p3@CREB3L1!0.96!9.10!CREB3L1;;chr7:19157043..19157088,-!p2@TWIST1!0.95!20.47!TWIST1;;chr1:170633262..170633285,+!p3@PRRX1!0.95!9.10!PRRX1;;chr5:92920456..92920488,+!p9@NR2F1!0.94!9.10!NR2F1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.93!77.32!GLIS2;;chr10:64576105..64576133,-!p1@EGR2!0.93!15.92!EGR2;;chr12:26277956..26277980,-!p1@BHLHE41!0.92!27.29!BHLHE41;;chr5:134369905..134369972,-!p1@PITX1!0.92!11.37!PITX1;;chr14:21566731..21566836,-!p1@ZNF219!0.91!79.59!ZNF219;;chr3:178789522..178789564,-!p2@ZMAT3!0.91!54.58!ZMAT3;;chr16:79633894..79633954,-!p3@MAF!0.90!13.64!MAF;;chr15:67391010..67391046,+!p13@SMAD3!0.89!6.82!SMAD3;;chr16:31076332..31076388,-!p3@ZNF668!0.89!6.82!ZNF668;;chr16:54320127..54320148,-!p6@IRX3!0.89!6.82!IRX3;;chr16:54320322..54320343,-!p7@IRX3!0.89!6.82!IRX3;;chr16:86600870..86600921,+!p2@FOXC2!0.89!6.82!FOXC2;;chr4:174451370..174451387,-!p1@HAND2!0.89!6.82!HAND2;;chr1:119530493..119530572,-!p1@TBX15!0.89!6.82!TBX15;;chr1:119530706..119530736,-!p3@TBX15!0.89!6.82!TBX15;;chr1:170632583..170632590,+!p26@PRRX1!0.89!6.82!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.89!6.82!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.89!6.82!FOXS1;;chrY:21906594..21906622,-!p1@KDM5D!0.89!6.82!KDM5D;;chr11:46299443..46299459,+!p4@CREB3L1!0.89!6.82!CREB3L1;;chr12:53625846..53625861,-!p6@RARG!0.89!6.82!RARG;;chr7:27224795..27224840,-!p2@HOXA11!0.89!6.82!HOXA11;;chr7:96635329..96635357,+!p9@DLX6!0.89!6.82!DLX6;;chr13:45151259..45151326,-!p2@TSC22D1!0.88!40.93!TSC22D1;;chr12:26277817..26277863,-!p2@BHLHE41!0.88!9.10!BHLHE41;;chr10:77161650..77161661,-!p4@ZNF503!0.87!9.10!ZNF503;;chr20:39317868..39317884,-!p1@MAFB!0.86!79.59!MAFB;;chrX:106960221..106960236,-!p3@TSC22D3!0.86!18.19!TSC22D3;;chr16:8962202..8962222,-!p3@CARHSP1!0.86!11.37!CARHSP1;;chr20:48808114..48808168,+!p5@CEBPB!0.85!15.92!CEBPB;;chr16:54964740..54964789,+!p1@IRX5!0.85!9.10!IRX5;;chr11:47279248..47279264,+!p3@NR1H3!0.84!6.82!NR1H3;;chr5:92918919..92918942,+!p1@NR2F1!0.83!27.29!NR2F1;;chr12:48298785..48298828,-!p1@VDR!0.82!31.84!VDR;;chr14:105886300..105886316,+!p2@MTA1!0.82!9.10!MTA1;;chr11:8102819..8102845,+!p3@TUB!0.81!6.82!TUB;;chr17:17723746..17723766,-!p5@SREBF1!0.80!9.10!SREBF1;;chr5:72744445..72744466,-!p2@FOXD1!0.80!9.10!FOXD1;;chr20:48807779..48807802,+!p10@CEBPB!0.80!9.10!CEBPB;;chr16:29817841..29817865,+!p1@MAZ!0.79!120.53!MAZ;;chr12:48298765..48298783,-!p2@VDR!0.79!11.37!VDR;;chr19:42788636..42788660,+!p1@CIC!0.79!9.10!CIC;;chr12:125003087..125003141,-!p4@NCOR2!0.79!6.82!NCOR2;;chr10:77161133..77161176,-!p3@ZNF503!0.78!11.37!ZNF503;;chr1:164528297..164528309,+!p9@PBX1!0.78!6.82!PBX1;;chr5:158526459..158526481,-!p2@EBF1!0.78!6.82!EBF1;;chr16:30583017..30583064,-!p1@ZNF688!0.77!27.29!ZNF688;;chr6:85474299..85474324,-!p1@TBX18!0.77!9.10!TBX18;;chr10:77161504..77161530,-!p1@ZNF503!0.76!70.50!ZNF503;;chr16:54320158..54320200,-!p5@IRX3!0.75!6.82!IRX3;;chr6:31515311..31515330,+!p3@NFKBIL1!0.75!6.82!NFKBIL1;;chr8:72756267..72756296,-!p4@MSC!0.74!6.82!MSC;;chr11:113930425..113930471,+!p1@ZBTB16!0.74!6.82!ZBTB16;;chr10:131762504..131762555,-!p1@EBF3!0.74!4.55!EBF3;;chr10:28032421..28032494,-!p2@MKX!0.74!4.55!MKX;;chr10:28034739..28034756,-!p1@MKX!0.74!4.55!MKX;;chr12:10856751..10856757,-!p39@CSDA!0.74!4.55!CSDA;;chr12:10870927..10870966,-!p5@CSDA!0.74!4.55!CSDA;;chr12:10875481..10875504,-!p14@CSDA!0.74!4.55!CSDA;;chr12:51611583..51611612,-!p4@POU6F1!0.74!4.55!POU6F1;;chr12:54380404..54380433,+!p3@HOXC10!0.74!4.55!HOXC10;;chr12:54402745..54402788,+!p1@HOXC8!0.74!4.55!HOXC8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.74!4.55!HOXC5;;chr12:57522813..57522825,-!p10@STAT6!0.74!4.55!STAT6;;chr13:45150455..45150472,-!p8@TSC22D1!0.74!4.55!TSC22D1;;chr5:134369879..134369898,-!p2@PITX1!0.74!4.55!PITX1;;chr5:92919312..92919334,+!p13@NR2F1!0.74!4.55!NR2F1;;chr5:92920517..92920532,+!p15@NR2F1!0.74!4.55!NR2F1;;chr6:134210243..134210257,+!p1@TCF21!0.74!4.55!TCF21;;chr6:1610178..1610190,+!p5@FOXC1!0.74!4.55!FOXC1;;chr6:45389966..45389977,+!p23@RUNX2!0.74!4.55!RUNX2;;chr7:27212501..27212513,-!p5@HOXA10!0.74!4.55!HOXA10;;chr7:27224842..27224872,-!p1@HOXA11!0.74!4.55!HOXA11;;chr7:96635277..96635301,+!p7@DLX6!0.74!4.55!DLX6;;chr7:96635448..96635470,+!p5@DLX6!0.74!4.55!DLX6;;chr7:96654015..96654018,-!p3@DLX5!0.74!4.55!DLX5;;chr2:28635317..28635334,+!p10@FOSL2!0.74!4.55!FOSL2;;chr2:74726710..74726736,-!p3@LBX2!0.74!4.55!LBX2;;chr2:85980868..85980880,+!p12@ATOH8!0.74!4.55!ATOH8;;chr2:85981008..85981025,+!p7@ATOH8!0.74!4.55!ATOH8;;chr3:157824001..157824078,-!p2@SHOX2!0.74!4.55!SHOX2;;chr4:57522701..57522712,-!p10@HOPX!0.74!4.55!HOPX;;chr17:17740823..17740833,-!p8@SREBF1!0.74!4.55!SREBF1;;chr19:13135731..13135787,+!p10@NFIX!0.74!4.55!NFIX;;chr19:16435735..16435773,+!p4@KLF2!0.74!4.55!KLF2;;chr19:20278043..20278054,+!p2@ZNF486!0.74!4.55!ZNF486;;chr1:170632683..170632696,+!p12@PRRX1!0.74!4.55!PRRX1;;chr21:36421347..36421380,-!p8@RUNX1!0.74!4.55!RUNX1;;chr21:40032558..40032578,-!p5@ERG!0.74!4.55!ERG;;chr1:23885981..23886002,-!p1@ID3!0.73!868.70!ID3;;chr17:46126136..46126152,+!p1@NFE2L1!0.73!254.70!NFE2L1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.72!338.84!TAX1BP3;;chr19:13106214..13106382,+!p1@NFIX!0.72!111.43!NFIX;;chr19:18392236..18392248,-!p2@JUND!0.72!31.84!JUND;;chr7:150974206..150974255,-!p1@SMARCD3!0.72!29.56!SMARCD3;;chr16:79634624..79634642,-!p1@MAF!0.71!18.19!MAF;;chr17:17723626..17723663,-!p4@SREBF1!0.71!9.10!SREBF1;;chr6:21594845..21594908,+!p6@SOX4!0.70!6.82!SOX4;;chr19:49140572..49140594,-!p2@DBP!0.70!6.82!DBP;;chr7:14028488..14028516,-!p2@ETV1!0.70!4.55!ETV1;;chr22:29196433..29196445,-!p4@XBP1!0.70!4.55!XBP1;;chr19:36545128..36545203,-!p1@THAP8!0.69!20.47!THAP8;;chr19:18392250..18392260,-!p4@JUND!0.69!13.64!JUND;;chr19:18391593..18391611,-!p6@JUND!0.69!6.82!JUND;;chr19:36980756..36980795,-!p3@ZNF566!0.69!6.82!ZNF566;;chr9:110252074..110252079,-!p3@KLF4!0.69!6.82!KLF4;;chr22:41735880..41735903,+!p5@ZC3H7B!0.69!4.55!ZC3H7B;;chr2:231084820..231084836,-!p5@SP110!0.69!4.55!SP110;;chr14:61116168..61116180,-!p2@SIX1!0.69!4.55!SIX1;;chr14:75894714..75894733,+!p1@JDP2!0.68!122.80!JDP2;;chr6:31515337..31515420,+!p1@NFKBIL1!0.68!79.59!NFKBIL1;;chr17:79885633..79885645,-!p4@MAFG!0.68!6.82!MAFG;;chr5:72743793..72743855,-!p4@FOXD1!0.68!4.55!FOXD1;;chr8:146024397..146024416,+!p2@ZNF517!0.68!4.55!ZNF517;;chr2:46524865..46524870,+!p9@EPAS1!0.68!4.55!EPAS1;;chr19:56154958..56155027,+!p1@ZNF581!0.67!140.99!ZNF581;;chr17:3571887..3571918,-!p2@TAX1BP3!0.67!47.76!TAX1BP3;;chr11:47279504..47279563,+!p1@NR1H3!0.67!9.10!NR1H3;;chr12:6798523..6798548,-!p6@ZNF384!0.67!6.82!ZNF384;;chr19:58666441..58666478,-!p2@ZNF329!0.67!6.82!ZNF329;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| |expression_enrichment_score=chr7:96654133..96654150,-!p1@DLX5!1.91!79.59!DLX5;;chr4:57522513..57522548,-!p4@HOPX!1.85!70.50!HOPX;;chr4:57522598..57522664,-!p3@HOPX!1.76!56.85!HOPX;;chr4:57522674..57522699,-!p5@HOPX!1.57!36.39!HOPX;;chr12:54378923..54378966,+!p1@HOXC10!1.55!34.11!HOXC10;;chr9:132427972..132428056,+!p1@PRRX2!1.54!43.21!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.49!29.56!PRRX2;;chr7:44143978..44143989,+!p2@AEBP1!1.46!50.03!AEBP1;;chr1:170633348..170633399,+!p2@PRRX1!1.45!36.39!PRRX1;;chr7:44143997..44144008,+!p3@AEBP1!1.45!34.11!AEBP1;;chr12:54393880..54393962,+!p1@HOXC9!1.45!27.29!HOXC9;;chr11:46299539..46299620,+!p2@CREB3L1!1.41!40.93!CREB3L1;;chr6:45296048..45296082,+!p1@RUNX2!1.40!27.29!RUNX2;;chr19:13134772..13134822,+!p2@NFIX!1.39!34.11!NFIX;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.38!22.74!HOXC5;;chr7:19157248..19157268,-!p1@TWIST1!1.37!61.40!TWIST1;;chr11:46299199..46299233,+!p1@CREB3L1!1.31!97.79!CREB3L1;;chr1:119530636..119530653,-!p2@TBX15!1.28!18.19!TBX15;;chr16:86600426..86600441,+!p1@FOXC2!1.25!40.93!FOXC2;;chr12:10875658..10875708,-!p2@CSDA!1.23!36.39!CSDA;;chr12:54379029..54379057,+!p2@HOXC10!1.23!15.92!HOXC10;;chrX:106960180..106960197,-!p2@TSC22D3!1.22!59.13!TSC22D3;;chr19:18391615..18391637,-!p5@JUND!1.22!20.47!JUND;;chr15:42749722..42749739,-!p2@ZFP106!1.21!27.29!ZFP106;;chr19:18391708..18391737,-!p7@JUND!1.20!22.74!JUND;;chr1:170632285..170632309,+!p1@PRRX1!1.18!15.92!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!1.17!304.73!AEBP1;;chr14:61116183..61116208,-!p1@SIX1!1.17!52.30!SIX1;;chr12:10875548..10875563,-!p13@CSDA!1.17!13.64!CSDA;;chr12:54394309..54394336,+!p2@HOXC9!1.17!13.64!HOXC9;;chr7:27196217..27196246,-!p2@HOXA7!1.17!13.64!HOXA7;;chr7:27213872..27213886,-!p4@HOXA10!1.17!13.64!HOXA10;;chr7:27213893..27213954,-!p1@HOXA10!1.17!13.64!HOXA10;;chr7:96654026..96654061,-!p2@DLX5!1.17!13.64!DLX5;;chr19:7584204..7584218,+!p9@ZNF358!1.17!13.64!ZNF358;;chr19:13135914..13135942,+!p19@NFIX!1.17!13.64!NFIX;;chr5:72744594..72744609,-!p1@FOXD1!1.15!59.13!FOXD1;;chr12:10875768..10875808,-!p3@CSDA!1.11!18.19!CSDA;;chr4:57522166..57522260,-!p2@HOPX!1.11!13.64!HOPX;;chr12:10875612..10875631,-!p9@CSDA!1.09!13.64!CSDA;;chr2:45236540..45236577,-!p1@SIX2!1.09!11.37!SIX2;;chr17:46132044..46132080,+!p4@NFE2L1!1.09!11.37!NFE2L1;;chr7:27192185..27192209,-!p1@HOXA3!1.09!11.37!HOXA3;;chr7:96635178..96635181,+!p1@DLX6!1.09!11.37!DLX6;;chr19:46801639..46801699,+!p1@HIF3A!1.09!11.37!HIF3A;;chr1:170632477..170632506,+!p6@PRRX1!1.09!11.37!PRRX1;;chr17:59477233..59477263,+!p1@TBX2!1.08!34.11!TBX2;;chr16:54320101..54320125,-!p4@IRX3!1.08!15.92!IRX3;;chr20:48807648..48807671,+!p9@CEBPB!1.08!15.92!CEBPB;;chr6:1610293..1610310,+!p1@FOXC1!1.07!18.19!FOXC1;;chr5:92919375..92919438,+!p6@NR2F1!1.06!11.37!NR2F1;;chr5:92919100..92919135,+!p3@NR2F1!1.01!11.37!NR2F1;;chr20:48807548..48807572,+!p14@CEBPB!1.01!11.37!CEBPB;;chr11:46333934..46333963,+!p5@CREB3L1!1.00!9.10!CREB3L1;;chr2:176994408..176994492,+!p1@HOXD8!1.00!9.10!HOXD8;;chr7:27196267..27196311,-!p1@HOXA7!1.00!9.10!HOXA7;;chr7:27205136..27205164,-!p1@HOXA9!1.00!9.10!HOXA9;;chr19:56111680..56111716,+!p1@ZNF524!0.99!34.11!ZNF524;;chr14:24837368..24837401,+!p1@NFATC4!0.98!20.47!NFATC4;;chr16:79634595..79634620,-!p2@MAF!0.98!15.92!MAF;;chr17:59477275..59477286,+!p3@TBX2!0.98!11.37!TBX2;;chrX:106960285..106960299,-!p1@TSC22D3!0.97!229.68!TSC22D3;;chr11:46299186..46299195,+!p3@CREB3L1!0.96!9.10!CREB3L1;;chr7:19157043..19157088,-!p2@TWIST1!0.95!20.47!TWIST1;;chr1:170633262..170633285,+!p3@PRRX1!0.95!9.10!PRRX1;;chr5:92920456..92920488,+!p9@NR2F1!0.94!9.10!NR2F1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.93!77.32!GLIS2;;chr10:64576105..64576133,-!p1@EGR2!0.93!15.92!EGR2;;chr12:26277956..26277980,-!p1@BHLHE41!0.92!27.29!BHLHE41;;chr5:134369905..134369972,-!p1@PITX1!0.92!11.37!PITX1;;chr14:21566731..21566836,-!p1@ZNF219!0.91!79.59!ZNF219;;chr3:178789522..178789564,-!p2@ZMAT3!0.91!54.58!ZMAT3;;chr16:79633894..79633954,-!p3@MAF!0.90!13.64!MAF;;chr15:67391010..67391046,+!p13@SMAD3!0.89!6.82!SMAD3;;chr16:31076332..31076388,-!p3@ZNF668!0.89!6.82!ZNF668;;chr16:54320127..54320148,-!p6@IRX3!0.89!6.82!IRX3;;chr16:54320322..54320343,-!p7@IRX3!0.89!6.82!IRX3;;chr16:86600870..86600921,+!p2@FOXC2!0.89!6.82!FOXC2;;chr4:174451370..174451387,-!p1@HAND2!0.89!6.82!HAND2;;chr1:119530493..119530572,-!p1@TBX15!0.89!6.82!TBX15;;chr1:119530706..119530736,-!p3@TBX15!0.89!6.82!TBX15;;chr1:170632583..170632590,+!p26@PRRX1!0.89!6.82!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.89!6.82!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.89!6.82!FOXS1;;chrY:21906594..21906622,-!p1@KDM5D!0.89!6.82!KDM5D;;chr11:46299443..46299459,+!p4@CREB3L1!0.89!6.82!CREB3L1;;chr12:53625846..53625861,-!p6@RARG!0.89!6.82!RARG;;chr7:27224795..27224840,-!p2@HOXA11!0.89!6.82!HOXA11;;chr7:96635329..96635357,+!p9@DLX6!0.89!6.82!DLX6;;chr13:45151259..45151326,-!p2@TSC22D1!0.88!40.93!TSC22D1;;chr12:26277817..26277863,-!p2@BHLHE41!0.88!9.10!BHLHE41;;chr10:77161650..77161661,-!p4@ZNF503!0.87!9.10!ZNF503;;chr20:39317868..39317884,-!p1@MAFB!0.86!79.59!MAFB;;chrX:106960221..106960236,-!p3@TSC22D3!0.86!18.19!TSC22D3;;chr16:8962202..8962222,-!p3@CARHSP1!0.86!11.37!CARHSP1;;chr20:48808114..48808168,+!p5@CEBPB!0.85!15.92!CEBPB;;chr16:54964740..54964789,+!p1@IRX5!0.85!9.10!IRX5;;chr11:47279248..47279264,+!p3@NR1H3!0.84!6.82!NR1H3;;chr5:92918919..92918942,+!p1@NR2F1!0.83!27.29!NR2F1;;chr12:48298785..48298828,-!p1@VDR!0.82!31.84!VDR;;chr14:105886300..105886316,+!p2@MTA1!0.82!9.10!MTA1;;chr11:8102819..8102845,+!p3@TUB!0.81!6.82!TUB;;chr17:17723746..17723766,-!p5@SREBF1!0.80!9.10!SREBF1;;chr5:72744445..72744466,-!p2@FOXD1!0.80!9.10!FOXD1;;chr20:48807779..48807802,+!p10@CEBPB!0.80!9.10!CEBPB;;chr16:29817841..29817865,+!p1@MAZ!0.79!120.53!MAZ;;chr12:48298765..48298783,-!p2@VDR!0.79!11.37!VDR;;chr19:42788636..42788660,+!p1@CIC!0.79!9.10!CIC;;chr12:125003087..125003141,-!p4@NCOR2!0.79!6.82!NCOR2;;chr10:77161133..77161176,-!p3@ZNF503!0.78!11.37!ZNF503;;chr1:164528297..164528309,+!p9@PBX1!0.78!6.82!PBX1;;chr5:158526459..158526481,-!p2@EBF1!0.78!6.82!EBF1;;chr16:30583017..30583064,-!p1@ZNF688!0.77!27.29!ZNF688;;chr6:85474299..85474324,-!p1@TBX18!0.77!9.10!TBX18;;chr10:77161504..77161530,-!p1@ZNF503!0.76!70.50!ZNF503;;chr16:54320158..54320200,-!p5@IRX3!0.75!6.82!IRX3;;chr6:31515311..31515330,+!p3@NFKBIL1!0.75!6.82!NFKBIL1;;chr8:72756267..72756296,-!p4@MSC!0.74!6.82!MSC;;chr11:113930425..113930471,+!p1@ZBTB16!0.74!6.82!ZBTB16;;chr10:131762504..131762555,-!p1@EBF3!0.74!4.55!EBF3;;chr10:28032421..28032494,-!p2@MKX!0.74!4.55!MKX;;chr10:28034739..28034756,-!p1@MKX!0.74!4.55!MKX;;chr12:10856751..10856757,-!p39@CSDA!0.74!4.55!CSDA;;chr12:10870927..10870966,-!p5@CSDA!0.74!4.55!CSDA;;chr12:10875481..10875504,-!p14@CSDA!0.74!4.55!CSDA;;chr12:51611583..51611612,-!p4@POU6F1!0.74!4.55!POU6F1;;chr12:54380404..54380433,+!p3@HOXC10!0.74!4.55!HOXC10;;chr12:54402745..54402788,+!p1@HOXC8!0.74!4.55!HOXC8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.74!4.55!HOXC5;;chr12:57522813..57522825,-!p10@STAT6!0.74!4.55!STAT6;;chr13:45150455..45150472,-!p8@TSC22D1!0.74!4.55!TSC22D1;;chr5:134369879..134369898,-!p2@PITX1!0.74!4.55!PITX1;;chr5:92919312..92919334,+!p13@NR2F1!0.74!4.55!NR2F1;;chr5:92920517..92920532,+!p15@NR2F1!0.74!4.55!NR2F1;;chr6:134210243..134210257,+!p1@TCF21!0.74!4.55!TCF21;;chr6:1610178..1610190,+!p5@FOXC1!0.74!4.55!FOXC1;;chr6:45389966..45389977,+!p23@RUNX2!0.74!4.55!RUNX2;;chr7:27212501..27212513,-!p5@HOXA10!0.74!4.55!HOXA10;;chr7:27224842..27224872,-!p1@HOXA11!0.74!4.55!HOXA11;;chr7:96635277..96635301,+!p7@DLX6!0.74!4.55!DLX6;;chr7:96635448..96635470,+!p5@DLX6!0.74!4.55!DLX6;;chr7:96654015..96654018,-!p3@DLX5!0.74!4.55!DLX5;;chr2:28635317..28635334,+!p10@FOSL2!0.74!4.55!FOSL2;;chr2:74726710..74726736,-!p3@LBX2!0.74!4.55!LBX2;;chr2:85980868..85980880,+!p12@ATOH8!0.74!4.55!ATOH8;;chr2:85981008..85981025,+!p7@ATOH8!0.74!4.55!ATOH8;;chr3:157824001..157824078,-!p2@SHOX2!0.74!4.55!SHOX2;;chr4:57522701..57522712,-!p10@HOPX!0.74!4.55!HOPX;;chr17:17740823..17740833,-!p8@SREBF1!0.74!4.55!SREBF1;;chr19:13135731..13135787,+!p10@NFIX!0.74!4.55!NFIX;;chr19:16435735..16435773,+!p4@KLF2!0.74!4.55!KLF2;;chr19:20278043..20278054,+!p2@ZNF486!0.74!4.55!ZNF486;;chr1:170632683..170632696,+!p12@PRRX1!0.74!4.55!PRRX1;;chr21:36421347..36421380,-!p8@RUNX1!0.74!4.55!RUNX1;;chr21:40032558..40032578,-!p5@ERG!0.74!4.55!ERG;;chr1:23885981..23886002,-!p1@ID3!0.73!868.70!ID3;;chr17:46126136..46126152,+!p1@NFE2L1!0.73!254.70!NFE2L1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.72!338.84!TAX1BP3;;chr19:13106214..13106382,+!p1@NFIX!0.72!111.43!NFIX;;chr19:18392236..18392248,-!p2@JUND!0.72!31.84!JUND;;chr7:150974206..150974255,-!p1@SMARCD3!0.72!29.56!SMARCD3;;chr16:79634624..79634642,-!p1@MAF!0.71!18.19!MAF;;chr17:17723626..17723663,-!p4@SREBF1!0.71!9.10!SREBF1;;chr6:21594845..21594908,+!p6@SOX4!0.70!6.82!SOX4;;chr19:49140572..49140594,-!p2@DBP!0.70!6.82!DBP;;chr7:14028488..14028516,-!p2@ETV1!0.70!4.55!ETV1;;chr22:29196433..29196445,-!p4@XBP1!0.70!4.55!XBP1;;chr19:36545128..36545203,-!p1@THAP8!0.69!20.47!THAP8;;chr19:18392250..18392260,-!p4@JUND!0.69!13.64!JUND;;chr19:18391593..18391611,-!p6@JUND!0.69!6.82!JUND;;chr19:36980756..36980795,-!p3@ZNF566!0.69!6.82!ZNF566;;chr9:110252074..110252079,-!p3@KLF4!0.69!6.82!KLF4;;chr22:41735880..41735903,+!p5@ZC3H7B!0.69!4.55!ZC3H7B;;chr2:231084820..231084836,-!p5@SP110!0.69!4.55!SP110;;chr14:61116168..61116180,-!p2@SIX1!0.69!4.55!SIX1;;chr14:75894714..75894733,+!p1@JDP2!0.68!122.80!JDP2;;chr6:31515337..31515420,+!p1@NFKBIL1!0.68!79.59!NFKBIL1;;chr17:79885633..79885645,-!p4@MAFG!0.68!6.82!MAFG;;chr5:72743793..72743855,-!p4@FOXD1!0.68!4.55!FOXD1;;chr8:146024397..146024416,+!p2@ZNF517!0.68!4.55!ZNF517;;chr2:46524865..46524870,+!p9@EPAS1!0.68!4.55!EPAS1;;chr19:56154958..56155027,+!p1@ZNF581!0.67!140.99!ZNF581;;chr17:3571887..3571918,-!p2@TAX1BP3!0.67!47.76!TAX1BP3;;chr11:47279504..47279563,+!p1@NR1H3!0.67!9.10!NR1H3;;chr12:6798523..6798548,-!p6@ZNF384!0.67!6.82!ZNF384;;chr19:58666441..58666478,-!p2@ZNF329!0.67!6.82!ZNF329;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43065197..43065244,+!p5@ZNF131!0.25!2.27!ZNF131;;chr9:128509635..128509658,+!p2@PBX3!0.25!2.27!PBX3;;chr9:2017420..2017433,+!p6@SMARCA2!0.25!2.27!SMARCA2;;chr8:145515263..145515299,+!p1@HSF1!0.24!113.70!HSF1;;chr12:57505121..57505179,-!p1@STAT6!0.24!61.40!STAT6;;chr11:65430402..65430431,-!p2@RELA!0.24!40.93!RELA;;chr19:19303731..19303783,+!p1@RFXANK!0.24!36.39!RFXANK;;chr16:29817617..29817664,+!p4@MAZ!0.24!15.92!MAZ;;chr16:3451184..3451264,+!p1@ZNF174!0.24!15.92!ZNF174;;chr18:77867139..77867176,+!p1@ADNP2!0.24!11.37!ADNP2;;chr19:58790314..58790358,+!p1@ZNF8!0.24!11.37!ZNF8;;chr18:77160282..77160343,+!p2@NFATC1!0.24!9.10!NFATC1;;chr11:58346525..58346570,+!p1@ZFP91!0.24!6.82!ZFP91;;chr19:44455368..44455396,+!p1@ZNF221!0.24!4.55!ZNF221;;chr19:57751980..57752019,+!p2@ZNF805!0.24!4.55!ZNF805;;chr19:58038683..58038736,+!p1@ZNF549!0.24!4.55!ZNF549;;chr6:134274295..134274308,+!p2@TBPL1!0.24!4.55!TBPL1;;chr8:123793959..123793977,+!p4@ZHX2!0.24!2.27!ZHX2;;chr11:8102749..8102769,+!p2@TUB!0.24!2.27!TUB;;chr12:12764947..12764986,+!p2@CREBL2!0.24!2.27!CREBL2;;chr12:57400227..57400245,-!p2@ZBTB39!0.24!2.27!ZBTB39;;chr19:19932586..19932598,-!p2@ZNF506!0.24!2.27!ZNF506;;chr19:58892390..58892404,-!p1@ZNF837!0.24!2.27!ZNF837;;chr19:6280007..6280019,-!p3@MLLT1!0.24!2.27!MLLT1;;chr1:249153114..249153175,-!p3@ZNF692!0.24!2.27!ZNF692;;chr20:25677399..25677433,-!p3@ZNF337!0.24!2.27!ZNF337;;chr1:8938709..8938720,-!p3@ENO1!0.23!75.04!ENO1;;chr19:57791328..57791377,+!p2@ZNF460!0.23!18.19!ZNF460;;chr12:133657477..133657529,+!p1@ZNF140!0.23!11.37!ZNF140;;chr16:58034520..58034622,-!p@chr16:58034520..58034622,-!0.23!11.37!ZNF319;;chr17:1958388..1958404,+!p1@HIC1!0.23!9.10!HIC1;;chr19:59084647..59084721,-!p1@MZF1!0.23!6.82!MZF1;;chr2:174830564..174830605,-!p3@SP3!0.23!6.82!SP3;;chr2:60780753..60780800,-!p1@BCL11A!0.23!6.82!BCL11A;;chr5:34929629..34929671,+!p2@DNAJC21!0.23!6.82!DNAJC21;;chr2:66662281..66662308,+!p1@MEIS1!0.23!4.55!MEIS1;;chr19:12721760..12721778,+!p3@ZNF791!0.23!4.55!ZNF791;;chr14:74353576..74353589,+!p3@ZNF410!0.23!4.55!ZNF410;;chr10:114710218..114710229,+!p4@TCF7L2!0.23!2.27!TCF7L2;;chr11:63684602..63684664,-!p1@RCOR2!0.23!2.27!RCOR2;;chr5:76383070..76383117,-!p3@ZBED3!0.23!2.27!ZBED3;;chr7:104654690..104654704,+!p2@MLL5!0.23!2.27!MLL5;;chr8:86089417..86089440,+!p2@E2F5!0.23!2.27!E2F5;;chr1:42800836..42800847,-!p3@FOXJ3!0.23!2.27!FOXJ3;;chr1:6845582..6845591,+!p2@CAMTA1!0.23!2.27!CAMTA1;;chr20:45142154..45142227,-!p1@ZNF334!0.23!2.27!ZNF334;;chrX:47341928..47342010,-!p2@ZNF41!0.23!2.27!ZNF41;;chr19:3366570..3366619,+!p1@NFIC!0.22!47.76!NFIC;;chr17:47492236..47492251,-!p1@PHB!0.22!20.47!PHB;;chr12:51477368..51477386,-!p1@CSRNP2!0.22!15.92!CSRNP2;;chr20:306489..306564,+!p1@SOX12!0.22!15.92!SOX12;;chr17:40540484..40540537,-!p2@STAT3!0.22!13.64!STAT3;;chr17:7387524..7387597,-!p1@ZBTB4!0.22!13.64!ZBTB4;;chr10:111985713..111985774,+!p2@MXI1!0.22!13.64!MXI1;;chr19:56110859..56110917,-!p1@FIZ1!0.22!9.10!FIZ1;;chr8:135725249..135725292,-!p1@ZFAT!0.22!9.10!ZFAT;;chr19:58071201..58071238,-!p1@ZNF550!0.22!4.55!ZNF550;;chr19:6280025..6280040,-!p2@MLLT1!0.22!4.55!MLLT1;;chr2:157198916..157198978,-!p2@NR4A2!0.22!4.55!NR4A2;;chr17:38219143..38219154,+!p2@THRA!0.22!4.55!THRA;;chr9:129622904..129622956,+!p1@ZBTB34!0.22!4.55!ZBTB34;;chr19:44037546..44037594,+!p1@ZNF575!0.22!2.27!ZNF575;;chr1:37940102..37940131,+!p2@ZC3H12A!0.22!2.27!ZC3H12A;;chr1:6845562..6845571,+!p3@CAMTA1!0.22!2.27!CAMTA1;;chr5:76383133..76383186,-!p2@ZBED3!0.22!2.27!ZBED3;;chr7:64467093..64467104,-!p2@ERV3-1,p2@ZNF117!0.22!2.27!ZNF117;;chr12:57919364..57919394,+!p4@MBD6!0.22!2.27!MBD6;; | ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000062 | |||
|ffid_belonging_in_development=CL:0000134,CL:0000335 | |ffid_belonging_in_development=CL:0000134,CL:0000335 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 38: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor2.CNhs11980.11353-117H3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor2.CNhs11980.11353-117H3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor2.CNhs11980.11353-117H3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor2.CNhs11980.11353-117H3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor2.CNhs11980.11353-117H3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11353-117H3 | |id=FF:11353-117H3 | ||
|is_a=EFO:0002091;;FF:0000127;;FF:0000128 | |is_a=EFO:0002091;;FF:0000127;;FF:0000128 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11980 | |||
|library_id_phase_based=2:CNhs11980 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11353 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.CGTACG.11353 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11353 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.CGTACG.11353 | |||
|name=Osteoblast - differentiated, donor2 | |name=Osteoblast - differentiated, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11980,LSID836,release011,COMPLETED | |profile_hcage=CNhs11980,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10003,,, | |profile_srnaseq=SRhi10003,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
|rna_box=117 | |rna_box=117 | ||
Line 61: | Line 82: | ||
|rna_tube_id=117H3 | |rna_tube_id=117H3 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10003.CGTACG | |||
|sample_age=embryo 22week | |sample_age=embryo 22week | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 83: | Line 106: | ||
|top_motifs=HMX1:2.43070393594;HES1:2.33984793782;ESR1:2.24930805124;EBF1:2.21618058476;TFAP4:1.80261387097;IKZF1:1.7552770145;ZNF423:1.71622591384;ZNF238:1.62390767104;bHLH_family:1.60814480064;TAL1_TCF{3,4,12}:1.58783250067;GLI1..3:1.53978025972;MAFB:1.4018876556;NFE2L1:1.38423428978;PAX1,9:1.27731631716;HOX{A5,B5}:1.17502028672;RXRA_VDR{dimer}:1.13750542782;UFEwm:1.10116956282;ESRRA:1.08371594449;NR5A1,2:1.05382749305;TP53:1.03786982715;GCM1,2:1.03763206354;SMAD1..7,9:1.00822898858;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.982174949912;ZBTB6:0.953856538595;ZIC1..3:0.854001024498;TFAP2{A,C}:0.822368410104;LHX3,4:0.820234452066;ATF6:0.794927379196;HOX{A6,A7,B6,B7}:0.761770099244;GTF2A1,2:0.724955846935;MTF1:0.700629198044;PPARG:0.685076442215;TFAP2B:0.666461796881;TEAD1:0.643722393575;GZF1:0.640888570825;SREBF1,2:0.61340982823;ZNF148:0.604908546628;ALX4:0.594890281084;TFCP2:0.587933548012;NANOG{mouse}:0.517424104279;RREB1:0.504577484825;NR6A1:0.503919229128;GFI1B:0.502203180359;ARID5B:0.494468799554;TLX1..3_NFIC{dimer}:0.477499468754;PAX5:0.451714519776;REST:0.40096154599;SPZ1:0.396431831346;MYFfamily:0.386348698095;NHLH1,2:0.358050387329;EVI1:0.32840468407;NFIX:0.322543786684;NR3C1:0.316203291864;SRF:0.315099854008;GTF2I:0.271994768869;XBP1:0.267862712802;HLF:0.267008869731;FOXL1:0.253734431244;HIC1:0.2393430271;NKX2-2,8:0.229489443728;KLF4:0.211298224085;HNF4A_NR2F1,2:0.19336266789;HAND1,2:0.185188616918;NR1H4:0.174868582019;STAT2,4,6:0.166497779124;NFE2L2:0.150852281169;TBX4,5:0.140735322087;NFATC1..3:0.127354063033;NFIL3:0.110073334389;MYB:0.089304270153;HNF1A:0.0786062914854;PATZ1:0.0648142349428;MED-1{core}:0.0508141243057;ONECUT1,2:0.0469606910612;MYOD1:0.024465736548;RXR{A,B,G}:0.0101988053889;RUNX1..3:-0.0137124891712;CEBPA,B_DDIT3:-0.0472541752058;LEF1_TCF7_TCF7L1,2:-0.0758662820105;YY1:-0.0778401168923;FOX{D1,D2}:-0.0939009651369;TBP:-0.123746388937;XCPE1{core}:-0.128316832392;ZEB1:-0.137469217408;MAZ:-0.157007353229;JUN:-0.165858626735;RFX1:-0.174422689732;MTE{core}:-0.178416091117;BACH2:-0.183323662422;SNAI1..3:-0.18915718727;FOS_FOS{B,L1}_JUN{B,D}:-0.199805315943;MZF1:-0.204343079431;FOXO1,3,4:-0.219708171512;PRRX1,2:-0.222664238694;FOSL2:-0.242168472279;EN1,2:-0.250350071427;STAT5{A,B}:-0.267631916882;TLX2:-0.287965608227;POU6F1:-0.310141095746;AIRE:-0.320965227629;NFKB1_REL_RELA:-0.327154866438;FOXA2:-0.346975043543;PRDM1:-0.364419462193;CDC5L:-0.373353328533;MEF2{A,B,C,D}:-0.375381770598;ATF4:-0.444892823996;GATA4:-0.445900393898;NKX2-3_NKX2-5:-0.461460942108;SOX17:-0.469458350204;GATA6:-0.47951440731;FOXM1:-0.479598948433;LMO2:-0.480963043446;DBP:-0.484927619313;PBX1:-0.486365993922;ADNP_IRX_SIX_ZHX:-0.49782351508;NKX3-2:-0.529718575669;MYBL2:-0.532366351993;PAX6:-0.542920037641;TOPORS:-0.570841927679;HOX{A4,D4}:-0.577029932865;SPIB:-0.594125969949;SP1:-0.611714957176;FOX{F1,F2,J1}:-0.612542746606;BPTF:-0.626487302653;RFX2..5_RFXANK_RFXAP:-0.647867475089;ETS1,2:-0.650025572286;HMGA1,2:-0.663885666753;TGIF1:-0.667994327657;GFI1:-0.668775196545;FOXQ1:-0.673152861321;EGR1..3:-0.676160455759;PAX4:-0.707369990354;IRF1,2:-0.711780190788;EP300:-0.72280099016;ZNF143:-0.744323555635;ZFP161:-0.752375771951;NFE2:-0.763821803246;CRX:-0.765594058276;FOXP3:-0.775209033346;POU3F1..4:-0.793903485142;NKX3-1:-0.794196395076;SPI1:-0.806777324839;DMAP1_NCOR{1,2}_SMARC:-0.8070752884;CDX1,2,4:-0.813005796545;FOX{I1,J2}:-0.815459219808;RORA:-0.829553276121;PAX3,7:-0.871448592484;T:-0.887428021299;POU2F1..3:-0.891198658668;ZNF384:-0.898484314132;PAX8:-0.91791106089;NANOG:-0.929080059287;IRF7:-0.931931562069;SOX5:-0.937903645561;SOX{8,9,10}:-0.976062885127;TFDP1:-1.01262676446;NKX6-1,2:-1.01746215576;HIF1A:-1.04406745767;CUX2:-1.04644672148;HOXA9_MEIS1:-1.05301923481;ELK1,4_GABP{A,B1}:-1.06401364163;AR:-1.06751817571;PITX1..3:-1.07088366997;ATF2:-1.07094157878;TEF:-1.08931985442;HSF1,2:-1.09333772353;RBPJ:-1.1588025527;OCT4_SOX2{dimer}:-1.17105129142;STAT1,3:-1.18310003923;SOX2:-1.20657893006;HBP1_HMGB_SSRP1_UBTF:-1.21222726696;NRF1:-1.21920259056;ATF5_CREB3:-1.26176820691;PAX2:-1.27568047974;CREB1:-1.28166500594;BREu{core}:-1.34098819947;NKX2-1,4:-1.36744176189;E2F1..5:-1.45296017525;ZBTB16:-1.46660013899;AHR_ARNT_ARNT2:-1.48041568125;VSX1,2:-1.50143583503;PDX1:-1.50893190087;NFY{A,B,C}:-1.54132825763;ALX1:-1.6017748677;FOXP1:-1.64637924525;POU5F1:-1.64828600646;ELF1,2,4:-1.65772190666;FOXN1:-1.70755989577;IKZF2:-1.80419820594;RXR{A,B,G}_{NR1H2,PPAR}dimers:-2.37923802558;POU1F1:-2.40463642062;FOXD3:-2.5066863879 | |top_motifs=HMX1:2.43070393594;HES1:2.33984793782;ESR1:2.24930805124;EBF1:2.21618058476;TFAP4:1.80261387097;IKZF1:1.7552770145;ZNF423:1.71622591384;ZNF238:1.62390767104;bHLH_family:1.60814480064;TAL1_TCF{3,4,12}:1.58783250067;GLI1..3:1.53978025972;MAFB:1.4018876556;NFE2L1:1.38423428978;PAX1,9:1.27731631716;HOX{A5,B5}:1.17502028672;RXRA_VDR{dimer}:1.13750542782;UFEwm:1.10116956282;ESRRA:1.08371594449;NR5A1,2:1.05382749305;TP53:1.03786982715;GCM1,2:1.03763206354;SMAD1..7,9:1.00822898858;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.982174949912;ZBTB6:0.953856538595;ZIC1..3:0.854001024498;TFAP2{A,C}:0.822368410104;LHX3,4:0.820234452066;ATF6:0.794927379196;HOX{A6,A7,B6,B7}:0.761770099244;GTF2A1,2:0.724955846935;MTF1:0.700629198044;PPARG:0.685076442215;TFAP2B:0.666461796881;TEAD1:0.643722393575;GZF1:0.640888570825;SREBF1,2:0.61340982823;ZNF148:0.604908546628;ALX4:0.594890281084;TFCP2:0.587933548012;NANOG{mouse}:0.517424104279;RREB1:0.504577484825;NR6A1:0.503919229128;GFI1B:0.502203180359;ARID5B:0.494468799554;TLX1..3_NFIC{dimer}:0.477499468754;PAX5:0.451714519776;REST:0.40096154599;SPZ1:0.396431831346;MYFfamily:0.386348698095;NHLH1,2:0.358050387329;EVI1:0.32840468407;NFIX:0.322543786684;NR3C1:0.316203291864;SRF:0.315099854008;GTF2I:0.271994768869;XBP1:0.267862712802;HLF:0.267008869731;FOXL1:0.253734431244;HIC1:0.2393430271;NKX2-2,8:0.229489443728;KLF4:0.211298224085;HNF4A_NR2F1,2:0.19336266789;HAND1,2:0.185188616918;NR1H4:0.174868582019;STAT2,4,6:0.166497779124;NFE2L2:0.150852281169;TBX4,5:0.140735322087;NFATC1..3:0.127354063033;NFIL3:0.110073334389;MYB:0.089304270153;HNF1A:0.0786062914854;PATZ1:0.0648142349428;MED-1{core}:0.0508141243057;ONECUT1,2:0.0469606910612;MYOD1:0.024465736548;RXR{A,B,G}:0.0101988053889;RUNX1..3:-0.0137124891712;CEBPA,B_DDIT3:-0.0472541752058;LEF1_TCF7_TCF7L1,2:-0.0758662820105;YY1:-0.0778401168923;FOX{D1,D2}:-0.0939009651369;TBP:-0.123746388937;XCPE1{core}:-0.128316832392;ZEB1:-0.137469217408;MAZ:-0.157007353229;JUN:-0.165858626735;RFX1:-0.174422689732;MTE{core}:-0.178416091117;BACH2:-0.183323662422;SNAI1..3:-0.18915718727;FOS_FOS{B,L1}_JUN{B,D}:-0.199805315943;MZF1:-0.204343079431;FOXO1,3,4:-0.219708171512;PRRX1,2:-0.222664238694;FOSL2:-0.242168472279;EN1,2:-0.250350071427;STAT5{A,B}:-0.267631916882;TLX2:-0.287965608227;POU6F1:-0.310141095746;AIRE:-0.320965227629;NFKB1_REL_RELA:-0.327154866438;FOXA2:-0.346975043543;PRDM1:-0.364419462193;CDC5L:-0.373353328533;MEF2{A,B,C,D}:-0.375381770598;ATF4:-0.444892823996;GATA4:-0.445900393898;NKX2-3_NKX2-5:-0.461460942108;SOX17:-0.469458350204;GATA6:-0.47951440731;FOXM1:-0.479598948433;LMO2:-0.480963043446;DBP:-0.484927619313;PBX1:-0.486365993922;ADNP_IRX_SIX_ZHX:-0.49782351508;NKX3-2:-0.529718575669;MYBL2:-0.532366351993;PAX6:-0.542920037641;TOPORS:-0.570841927679;HOX{A4,D4}:-0.577029932865;SPIB:-0.594125969949;SP1:-0.611714957176;FOX{F1,F2,J1}:-0.612542746606;BPTF:-0.626487302653;RFX2..5_RFXANK_RFXAP:-0.647867475089;ETS1,2:-0.650025572286;HMGA1,2:-0.663885666753;TGIF1:-0.667994327657;GFI1:-0.668775196545;FOXQ1:-0.673152861321;EGR1..3:-0.676160455759;PAX4:-0.707369990354;IRF1,2:-0.711780190788;EP300:-0.72280099016;ZNF143:-0.744323555635;ZFP161:-0.752375771951;NFE2:-0.763821803246;CRX:-0.765594058276;FOXP3:-0.775209033346;POU3F1..4:-0.793903485142;NKX3-1:-0.794196395076;SPI1:-0.806777324839;DMAP1_NCOR{1,2}_SMARC:-0.8070752884;CDX1,2,4:-0.813005796545;FOX{I1,J2}:-0.815459219808;RORA:-0.829553276121;PAX3,7:-0.871448592484;T:-0.887428021299;POU2F1..3:-0.891198658668;ZNF384:-0.898484314132;PAX8:-0.91791106089;NANOG:-0.929080059287;IRF7:-0.931931562069;SOX5:-0.937903645561;SOX{8,9,10}:-0.976062885127;TFDP1:-1.01262676446;NKX6-1,2:-1.01746215576;HIF1A:-1.04406745767;CUX2:-1.04644672148;HOXA9_MEIS1:-1.05301923481;ELK1,4_GABP{A,B1}:-1.06401364163;AR:-1.06751817571;PITX1..3:-1.07088366997;ATF2:-1.07094157878;TEF:-1.08931985442;HSF1,2:-1.09333772353;RBPJ:-1.1588025527;OCT4_SOX2{dimer}:-1.17105129142;STAT1,3:-1.18310003923;SOX2:-1.20657893006;HBP1_HMGB_SSRP1_UBTF:-1.21222726696;NRF1:-1.21920259056;ATF5_CREB3:-1.26176820691;PAX2:-1.27568047974;CREB1:-1.28166500594;BREu{core}:-1.34098819947;NKX2-1,4:-1.36744176189;E2F1..5:-1.45296017525;ZBTB16:-1.46660013899;AHR_ARNT_ARNT2:-1.48041568125;VSX1,2:-1.50143583503;PDX1:-1.50893190087;NFY{A,B,C}:-1.54132825763;ALX1:-1.6017748677;FOXP1:-1.64637924525;POU5F1:-1.64828600646;ELF1,2,4:-1.65772190666;FOXN1:-1.70755989577;IKZF2:-1.80419820594;RXR{A,B,G}_{NR1H2,PPAR}dimers:-2.37923802558;POU1F1:-2.40463642062;FOXD3:-2.5066863879 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11353-117H3;search_select_hide=table117:FF:11353-117H3 | |||
}} | }} |
Latest revision as of 17:54, 4 June 2020
Name: | Osteoblast - differentiated, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11980 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11980
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11980
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.666 |
10 | 10 | 0.871 |
100 | 100 | 0.917 |
101 | 101 | 0.908 |
102 | 102 | 0.722 |
103 | 103 | 0.226 |
104 | 104 | 0.138 |
105 | 105 | 0.576 |
106 | 106 | 0.0298 |
107 | 107 | 0.0368 |
108 | 108 | 0.229 |
109 | 109 | 0.0851 |
11 | 11 | 0.0375 |
110 | 110 | 0.287 |
111 | 111 | 0.595 |
112 | 112 | 0.402 |
113 | 113 | 0.267 |
114 | 114 | 0.207 |
115 | 115 | 0.0161 |
116 | 116 | 0.105 |
117 | 117 | 0.729 |
118 | 118 | 0.821 |
119 | 119 | 0.194 |
12 | 12 | 0.632 |
120 | 120 | 0.217 |
121 | 121 | 0.543 |
122 | 122 | 0.479 |
123 | 123 | 0.363 |
124 | 124 | 0.91 |
125 | 125 | 0.945 |
126 | 126 | 0.81 |
127 | 127 | 0.21 |
128 | 128 | 0.0348 |
129 | 129 | 0.683 |
13 | 13 | 0.791 |
130 | 130 | 0.576 |
131 | 131 | 0.856 |
132 | 132 | 0.396 |
133 | 133 | 0.963 |
134 | 134 | 0.169 |
135 | 135 | 0.175 |
136 | 136 | 0.761 |
137 | 137 | 0.418 |
138 | 138 | 0.957 |
139 | 139 | 0.0997 |
14 | 14 | 0.845 |
140 | 140 | 0.158 |
141 | 141 | 0.527 |
142 | 142 | 0.0536 |
143 | 143 | 0.0754 |
144 | 144 | 0.78 |
145 | 145 | 0.186 |
146 | 146 | 0.239 |
147 | 147 | 0.46 |
148 | 148 | 0.442 |
149 | 149 | 0.00917 |
15 | 15 | 0.204 |
150 | 150 | 0.345 |
151 | 151 | 0.296 |
152 | 152 | 0.0679 |
153 | 153 | 0.87 |
154 | 154 | 0.59 |
155 | 155 | 0.425 |
156 | 156 | 0.728 |
157 | 157 | 0.171 |
158 | 158 | 0.189 |
159 | 159 | 0.654 |
16 | 16 | 0.0703 |
160 | 160 | 0.133 |
161 | 161 | 0.568 |
162 | 162 | 0.0443 |
163 | 163 | 0.0877 |
164 | 164 | 0.448 |
165 | 165 | 0.611 |
166 | 166 | 0.121 |
167 | 167 | 0.606 |
168 | 168 | 0.718 |
169 | 169 | 0.0367 |
17 | 17 | 0.178 |
18 | 18 | 0.0392 |
19 | 19 | 0.06 |
2 | 2 | 0.289 |
20 | 20 | 0.509 |
21 | 21 | 0.764 |
22 | 22 | 0.0891 |
23 | 23 | 0.187 |
24 | 24 | 0.792 |
25 | 25 | 0.573 |
26 | 26 | 0.299 |
27 | 27 | 0.205 |
28 | 28 | 0.613 |
29 | 29 | 0.415 |
3 | 3 | 0.341 |
30 | 30 | 0.425 |
31 | 31 | 0.367 |
32 | 32 | 1.75673e-7 |
33 | 33 | 0.757 |
34 | 34 | 0.535 |
35 | 35 | 0.333 |
36 | 36 | 0.858 |
37 | 37 | 0.145 |
38 | 38 | 0.409 |
39 | 39 | 0.257 |
4 | 4 | 0.703 |
40 | 40 | 0.286 |
41 | 41 | 0.926 |
42 | 42 | 0.781 |
43 | 43 | 0.16 |
44 | 44 | 0.213 |
45 | 45 | 0.256 |
46 | 46 | 0.13 |
47 | 47 | 0.323 |
48 | 48 | 0.188 |
49 | 49 | 0.17 |
5 | 5 | 0.61 |
50 | 50 | 0.519 |
51 | 51 | 0.266 |
52 | 52 | 0.323 |
53 | 53 | 0.771 |
54 | 54 | 0.326 |
55 | 55 | 0.0662 |
56 | 56 | 0.372 |
57 | 57 | 0.393 |
58 | 58 | 0.966 |
59 | 59 | 0.013 |
6 | 6 | 0.956 |
60 | 60 | 0.392 |
61 | 61 | 0.603 |
62 | 62 | 0.759 |
63 | 63 | 0.0748 |
64 | 64 | 0.153 |
65 | 65 | 0.0684 |
66 | 66 | 0.709 |
67 | 67 | 0.363 |
68 | 68 | 0.329 |
69 | 69 | 0.0811 |
7 | 7 | 0.853 |
70 | 70 | 0.0301 |
71 | 71 | 0.43 |
72 | 72 | 0.559 |
73 | 73 | 0.0438 |
74 | 74 | 0.729 |
75 | 75 | 0.377 |
76 | 76 | 0.753 |
77 | 77 | 0.0131 |
78 | 78 | 0.52 |
79 | 79 | 0.00129 |
8 | 8 | 0.0488 |
80 | 80 | 0.926 |
81 | 81 | 0.213 |
82 | 82 | 0.123 |
83 | 83 | 0.551 |
84 | 84 | 0.224 |
85 | 85 | 0.0785 |
86 | 86 | 0.444 |
87 | 87 | 0.226 |
88 | 88 | 0.601 |
89 | 89 | 0.0229 |
9 | 9 | 0.438 |
90 | 90 | 0.354 |
91 | 91 | 0.357 |
92 | 92 | 0.104 |
93 | 93 | 0.54 |
94 | 94 | 0.527 |
95 | 95 | 0.452 |
96 | 96 | 0.494 |
97 | 97 | 0.248 |
98 | 98 | 0.0631 |
99 | 99 | 0.021 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11980
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000127 human osteoblast-Sciencell sample
FF:0000128 human osteoblast-Cell applications sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000062 (osteoblast)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000127 (human osteoblast-Sciencell sample)
0000128 (human osteoblast-Cell applications sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000335 (mesenchyme condensation cell)