FF:11286-116I8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005888 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005888 | ||
|accession_numbers=CAGE;DRX008486;DRR009358;DRZ000783;DRZ002168;DRZ012133;DRZ013518 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037240;DRR041606;DRZ007248 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0010314,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0004573,UBERON:0003498,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0005985,UBERON:0010317,UBERON:0007798,UBERON:0001621,UBERON:0004535,UBERON:0004571,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002494,CL:0000359,CL:0002592 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000172 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.89!76.02!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.58!37.00!SIM2;;chr11:65686802..65686818,+!p6@DRAP1!1.53!55.60!DRAP1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.49!29.72!ZBED1;;chr11:46299199..46299233,+!p1@CREB3L1!1.45!135.66!CREB3L1;;chr16:86600426..86600441,+!p1@FOXC2!1.43!63.08!FOXC2;;chr11:46299539..46299620,+!p2@CREB3L1!1.35!36.19!CREB3L1;;chr20:30433396..30433414,-!p1@FOXS1!1.33!20.22!FOXS1;;chr11:65687362..65687436,+!p3@DRAP1!1.32!89.57!DRAP1;;chr2:19558373..19558392,-!p1@OSR1!1.30!51.35!OSR1;;chr6:34204921..34204939,+!p3@HMGA1!1.28!529.11!HMGA1;;chr6:134210243..134210257,+!p1@TCF21!1.26!17.39!TCF21;;chr11:65686732..65686756,+!p2@DRAP1!1.25!69.55!DRAP1;;chr18:19749541..19749557,+!p1@GATA6!1.16!42.46!GATA6;;chr15:67418047..67418093,+!p4@SMAD3!1.10!14.76!SMAD3;;chr11:65687222..65687240,+!p7@DRAP1!1.09!14.56!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!1.08!43.47!FOSL1;;chr20:6748325..6748352,+!p1@BMP2!1.03!14.15!BMP2;;chr7:1577899..1577943,+!p3@MAFK!1.02!9.50!MAFK;;chr8:11561684..11561751,+!p1@GATA4!1.01!9.30!GATA4;;chr4:174450089..174450153,-!p2@HAND2!0.99!8.69!HAND2;;chr1:170632285..170632309,+!p1@PRRX1!0.98!9.70!PRRX1;;chr5:72744594..72744609,-!p1@FOXD1!0.97!39.02!FOXD1;;chr1:170633262..170633285,+!p3@PRRX1!0.97!9.50!PRRX1;;chr11:65667846..65667868,-!p1@FOSL1!0.96!220.78!FOSL1;;chr1:170633348..170633399,+!p2@PRRX1!0.96!11.32!PRRX1;;chr15:67418177..67418204,+!p9@SMAD3!0.96!8.09!SMAD3;;chr15:67418119..67418162,+!p5@SMAD3!0.95!8.90!SMAD3;;chr12:124873357..124873401,-!p1@NCOR2!0.94!92.40!NCOR2;;chr9:35732647..35732678,+!p2@CREB3!0.92!42.66!CREB3;;chr16:86544113..86544145,+!p1@FOXF1!0.92!9.30!FOXF1;;chr2:239756671..239756732,+!p1@TWIST2!0.91!23.66!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!0.91!12.33!TWIST2;;chr11:65687158..65687216,+!p4@DRAP1!0.90!41.45!DRAP1;;chr16:86600870..86600921,+!p2@FOXC2!0.90!6.87!FOXC2;;chr11:65687243..65687276,+!p8@DRAP1!0.88!9.10!DRAP1;;chr11:34642612..34642646,+!p1@EHF!0.88!6.67!EHF;;chr12:66218923..66218934,+!p14@HMGA2!0.87!6.47!HMGA2;;chr18:19749386..19749404,+!p2@GATA6!0.86!9.10!GATA6;;chr1:170632959..170632987,+!p4@PRRX1!0.85!6.67!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.85!6.07!PRRX1;;chr5:72744445..72744466,-!p2@FOXD1!0.84!10.31!FOXD1;;chr7:150945865..150945896,-!p4@SMARCD3!0.84!5.86!SMARCD3;;chr12:66218836..66218888,+!p1@HMGA2!0.83!58.23!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!0.82!15.77!HMGA2;;chr15:67430351..67430366,+!p10@SMAD3!0.82!5.66!SMAD3;;chr19:47523058..47523114,+!p1@NPAS1!0.82!5.66!NPAS1;;chr4:174451370..174451387,-!p1@HAND2!0.82!5.66!HAND2;;chr11:65686776..65686787,+!p9@DRAP1!0.81!6.67!DRAP1;;chr21:38071403..38071428,+!p2@SIM2!0.81!5.46!SIM2;;chr6:34204973..34204990,+!p4@HMGA1!0.79!74.40!HMGA1;;chr17:59477233..59477263,+!p1@TBX2!0.78!16.78!TBX2;;chr12:66218904..66218913,+!p11@HMGA2!0.78!5.05!HMGA2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.77!383.34!TAX1BP3;;chr11:65686952..65686975,+!p5@DRAP1!0.77!29.52!DRAP1;;chr12:66218598..66218645,+!p2@HMGA2!0.77!24.46!HMGA2;;chr1:151032860..151032918,+!p1@MLLT11!0.75!60.65!MLLT11;;chr16:86600458..86600461,+!p3@FOXC2!0.75!4.65!FOXC2;;chr22:38598086..38598105,+!p1@MAFF!0.73!51.56!MAFF;;chr10:94449703..94449718,+!p1@HHEX!0.73!18.60!HHEX;;chr8:106330656..106330684,+!p1@ZFPM2!0.73!12.33!ZFPM2;;chr5:72743793..72743855,-!p4@FOXD1!0.72!5.05!FOXD1;;chr6:34204672..34204692,+!p1@HMGA1!0.71!530.12!HMGA1;;chr20:50721803..50721857,-!p2@ZFP64!0.70!6.67!ZFP64;;chr15:67430381..67430396,+!p21@SMAD3!0.70!4.04!SMAD3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.69!55.20!ZC3H12A;;chr17:59477275..59477286,+!p3@TBX2!0.68!5.26!TBX2;;chr15:83953397..83953425,-!p1@BNC1!0.68!4.45!BNC1;;chr1:170633100..170633112,+!p19@PRRX1!0.68!3.84!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!0.67!94.22!AEBP1;;chr12:53614115..53614154,-!p1@RARG!0.67!22.64!RARG;;chr20:42543441..42543497,+!p1@TOX2!0.67!19.01!TOX2;;chr17:1959369..1959388,+!p2@HIC1!0.67!10.72!HIC1;;chr8:106330696..106330719,+!p2@ZFPM2!0.67!4.85!ZFPM2;;chr11:46299443..46299459,+!p4@CREB3L1!0.67!3.64!CREB3L1;;chr2:71127699..71127744,+!p1@VAX2!0.66!8.09!VAX2;;chr7:44143978..44143989,+!p2@AEBP1!0.66!7.08!AEBP1;;chr9:35732592..35732640,+!p1@CREB3!0.65!53.98!CREB3;;chr12:57504975..57505019,-!p2@STAT6!0.65!16.17!STAT6;;chr3:52001448..52001478,-!p2@PCBP4!0.64!55.60!PCBP4;;chr6:34205372..34205412,+!p5@HMGA1!0.64!20.02!HMGA1;;chr1:151032922..151032951,+!p2@MLLT11!0.64!6.07!MLLT11;;chr8:145159846..145159889,+!p6@MAF1!0.64!5.05!MAF1;;chr4:81118647..81118666,+!p1@PRDM8!0.64!4.65!PRDM8;;chr11:46299186..46299195,+!p3@CREB3L1!0.64!3.84!CREB3L1;;chr7:35293685..35293718,-!p1@TBX20!0.63!3.23!TBX20;;chr8:55370720..55370733,+!p2@SOX17!0.63!3.23!SOX17;;chr9:35732514..35732530,+!p5@CREB3!0.62!4.85!CREB3;;chr4:2263809..2263854,-!p1@MXD4!0.61!143.95!MXD4;;chr12:124873852..124873881,-!p3@NCOR2!0.61!22.04!NCOR2;;chr8:72756063..72756125,-!p1@MSC!0.61!6.87!MSC;;chr8:72756637..72756664,-!p3@MSC!0.61!3.64!MSC;;chr1:8938709..8938720,-!p3@ENO1!0.60!176.71!ENO1;;chr5:321810..321877,+!p1@AHRR!0.60!10.92!AHRR;;chr15:96876966..96877017,+!p12@NR2F2!0.60!4.65!NR2F2;;chr5:72744562..72744573,-!p3@FOXD1!0.60!3.84!FOXD1;;chr10:8096772..8096787,+!p2@GATA3!0.60!3.64!GATA3;;chr11:65430554..65430579,-!p3@RELA!0.59!8.49!RELA;;chr16:67881588..67881612,-!p2@CENPT!0.59!4.25!CENPT;;chr6:126070769..126070801,+!p1@HEY2!0.59!3.44!HEY2;;chr17:46622070..46622109,-!p1@HOXB2!0.58!7.08!HOXB2;;chr12:125002827..125002855,-!p5@NCOR2!0.58!4.25!NCOR2;;chr11:32457075..32457095,-!p1@WT1!0.58!2.83!WT1;;chr15:67458491..67458505,+!p18@SMAD3!0.58!2.83!SMAD3;;chr8:25902876..25902936,-!p1@EBF2!0.58!2.83!EBF2;;chr2:85981107..85981120,+!p3@ATOH8!0.58!2.83!ATOH8;;chr19:42636586..42636607,-!p1@POU2F2!0.57!8.69!POU2F2;;chr19:47922750..47922795,-!p1@MEIS3!0.57!4.85!MEIS3;;chr17:46622205..46622218,-!p3@HOXB2!0.57!3.23!HOXB2;;chr17:1958388..1958404,+!p1@HIC1!0.56!20.42!HIC1;;chr19:13134772..13134822,+!p2@NFIX!0.56!4.25!NFIX;;chr15:67458861..67458879,+!p17@SMAD3!0.56!2.63!SMAD3;;chr10:131762504..131762555,-!p1@EBF3!0.56!2.63!EBF3;;chr9:16705069..16705086,-!p3@BNC2!0.56!2.63!BNC2;;chr7:19157043..19157088,-!p2@TWIST1!0.55!7.48!TWIST1;;chr6:10415276..10415341,-!p2@TFAP2A!0.55!3.23!TFAP2A;;chr16:29819446..29819471,+!p9@MAZ!0.54!8.69!MAZ;;chr7:150946015..150946070,-!p3@SMARCD3!0.54!6.27!SMARCD3;;chr18:19749517..19749531,+!p3@GATA6!0.54!5.05!GATA6;;chr17:46622440..46622477,-!p5@HOXB2!0.54!2.83!HOXB2;;chr5:92918919..92918942,+!p1@NR2F1!0.53!13.14!NR2F1;;chr3:52001426..52001447,-!p3@PCBP4!0.53!8.09!PCBP4;;chr2:242576431..242576458,-!p3@THAP4!0.53!6.87!THAP4;;chr18:53068911..53068935,-!p4@TCF4!0.53!2.83!TCF4;;chr19:13136057..13136085,+!p11@NFIX!0.53!2.43!NFIX;;chr5:139492456..139492489,+!p7@PURA!0.53!2.43!PURA;;chr5:2751762..2751784,-!p1@IRX2!0.53!2.43!IRX2;;chr12:66218420..66218439,+!p12@HMGA2!0.53!2.43!HMGA2;;chr11:65686855..65686946,+!p1@DRAP1!0.52!225.23!DRAP1;;chr17:46621937..46621966,-!p2@HOXB2!0.52!7.48!HOXB2;;chr2:121493425..121493474,+!p1@GLI2!0.52!6.07!GLI2;;chr16:54320101..54320125,-!p4@IRX3!0.52!3.64!IRX3;;chr8:72756213..72756243,-!p5@MSC!0.52!3.23!MSC;;chr19:16435625..16435682,+!p1@KLF2!0.51!94.82!KLF2;;chr11:62368696..62368759,-!p4@MTA2!0.51!17.79!MTA2;;chr20:39946361..39946379,-!p2@ZHX3!0.51!8.09!ZHX3;;chr15:96874244..96874259,+!p5@NR2F2!0.51!6.47!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.51!4.65!ZFP106;;chr12:80085061..80085119,-!p6@PAWR!0.51!4.04!PAWR;;chr3:157823517..157823562,-!p1@SHOX2!0.51!2.43!SHOX2;;chr2:114036488..114036504,-!p1@PAX8!0.51!2.22!PAX8;;chr19:46801639..46801699,+!p1@HIF3A!0.51!2.22!HIF3A;;chr18:45663490..45663528,-!p2@ZBTB7C!0.51!2.22!ZBTB7C;;chr1:8763440..8763460,-!p2@RERE!0.50!14.15!RERE;;chr20:42543506..42543549,+!p2@TOX2!0.50!6.27!TOX2;;chr8:72756667..72756736,-!p2@MSC!0.50!3.84!MSC;;chr16:54320158..54320200,-!p5@IRX3!0.50!3.44!IRX3;;chr1:23885981..23886002,-!p1@ID3!0.49!489.89!ID3;;chr1:8938766..8938774,-!p2@ENO1!0.49!195.51!ENO1;;chr19:13106214..13106382,+!p1@NFIX!0.49!65.51!NFIX;;chr17:3571887..3571918,-!p2@TAX1BP3!0.49!31.14!TAX1BP3;;chr20:48599506..48599526,+!p1@SNAI1!0.49!17.59!SNAI1;;chr8:145159277..145159282,+!p7@MAF1!0.49!3.64!MAF1;;chr12:7079780..7079791,-!p2@PHB2!0.48!13.95!PHB2;;chr22:41697497..41697515,+!p2@ZC3H7B!0.48!6.87!ZC3H7B;;chr2:85981222..85981259,+!p2@ATOH8!0.48!3.84!ATOH8;;chr22:38598042..38598052,+!p4@MAFF!0.48!3.64!MAFF;;chr17:41622925..41622976,-!p3@ETV4!0.48!3.44!ETV4;;chr7:44143997..44144008,+!p3@AEBP1!0.48!2.83!AEBP1;;chr8:77593448..77593471,+!p2@ZFHX4!0.48!2.02!ZFHX4;;chr15:96869165..96869183,+!p20@NR2F2!0.48!2.02!NR2F2;;chr17:41622731..41622764,-!p5@ETV4!0.48!2.02!ETV4;;chr21:38071462..38071474,+!p3@SIM2!0.48!2.02!SIM2;;chr11:65429891..65429915,-!p7@RELA!0.48!2.02!RELA;;chr12:54447637..54447659,+!p4@HOXC4!0.48!2.02!HOXC4;;chr22:41721853..41721874,+!p6@ZC3H7B!0.48!2.02!ZC3H7B;;chr2:119604456..119604501,-!p2@EN1!0.48!2.02!EN1;;chr3:25469815..25469866,+!p3@RARB!0.48!2.02!RARB;;chr3:25470156..25470227,+!p2@RARB!0.48!2.02!RARB;;chr15:96869255..96869291,+!p6@NR2F2!0.47!4.25!NR2F2;;chr2:200322654..200322707,-!p2@SATB2!0.47!3.23!SATB2;;chr17:40719165..40719168,+!p4@MLX!0.47!2.63!MLX;;chr17:46622229..46622257,-!p6@HOXB2!0.47!2.43!HOXB2;;chr14:62162258..62162269,+!p2@HIF1A!0.46!25.07!HIF1A;;chr8:128749984..128750033,+!p4@MYC!0.46!8.90!MYC;;chr7:19157248..19157268,-!p1@TWIST1!0.46!6.67!TWIST1;;chr22:38598057..38598071,+!p3@MAFF!0.46!5.46!MAFF;;chr1:8938736..8938756,-!p1@ENO1!0.45!2814.78!ENO1;;chr19:1863568..1863586,-!p1@KLF16!0.45!84.11!KLF16;;chr19:3366570..3366619,+!p1@NFIC!0.45!81.48!NFIC;;chr3:141087393..141087426,+!p3@ZBTB38!0.45!9.70!ZBTB38;;chr17:41622765..41622821,-!p2@ETV4!0.45!3.23!ETV4;;chr17:46622114..46622138,-!p4@HOXB2!0.45!3.23!HOXB2;;chr3:25469724..25469773,+!p1@RARB!0.45!3.03!RARB;;chr12:66218212..66218244,+!p5@HMGA2!0.45!3.03!HMGA2;;chr8:72756267..72756296,-!p4@MSC!0.45!3.03!MSC;;chr8:72755987..72756002,-!p7@MSC!0.45!1.82!MSC;;chr11:125034605..125034636,+!p2@PKNOX2!0.45!1.82!PKNOX2;;chr12:115122318..115122331,-!p2@TBX3!0.45!1.82!TBX3;;chr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| |expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.89!76.02!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.58!37.00!SIM2;;chr11:65686802..65686818,+!p6@DRAP1!1.53!55.60!DRAP1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.49!29.72!ZBED1;;chr11:46299199..46299233,+!p1@CREB3L1!1.45!135.66!CREB3L1;;chr16:86600426..86600441,+!p1@FOXC2!1.43!63.08!FOXC2;;chr11:46299539..46299620,+!p2@CREB3L1!1.35!36.19!CREB3L1;;chr20:30433396..30433414,-!p1@FOXS1!1.33!20.22!FOXS1;;chr11:65687362..65687436,+!p3@DRAP1!1.32!89.57!DRAP1;;chr2:19558373..19558392,-!p1@OSR1!1.30!51.35!OSR1;;chr6:34204921..34204939,+!p3@HMGA1!1.28!529.11!HMGA1;;chr6:134210243..134210257,+!p1@TCF21!1.26!17.39!TCF21;;chr11:65686732..65686756,+!p2@DRAP1!1.25!69.55!DRAP1;;chr18:19749541..19749557,+!p1@GATA6!1.16!42.46!GATA6;;chr15:67418047..67418093,+!p4@SMAD3!1.10!14.76!SMAD3;;chr11:65687222..65687240,+!p7@DRAP1!1.09!14.56!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!1.08!43.47!FOSL1;;chr20:6748325..6748352,+!p1@BMP2!1.03!14.15!BMP2;;chr7:1577899..1577943,+!p3@MAFK!1.02!9.50!MAFK;;chr8:11561684..11561751,+!p1@GATA4!1.01!9.30!GATA4;;chr4:174450089..174450153,-!p2@HAND2!0.99!8.69!HAND2;;chr1:170632285..170632309,+!p1@PRRX1!0.98!9.70!PRRX1;;chr5:72744594..72744609,-!p1@FOXD1!0.97!39.02!FOXD1;;chr1:170633262..170633285,+!p3@PRRX1!0.97!9.50!PRRX1;;chr11:65667846..65667868,-!p1@FOSL1!0.96!220.78!FOSL1;;chr1:170633348..170633399,+!p2@PRRX1!0.96!11.32!PRRX1;;chr15:67418177..67418204,+!p9@SMAD3!0.96!8.09!SMAD3;;chr15:67418119..67418162,+!p5@SMAD3!0.95!8.90!SMAD3;;chr12:124873357..124873401,-!p1@NCOR2!0.94!92.40!NCOR2;;chr9:35732647..35732678,+!p2@CREB3!0.92!42.66!CREB3;;chr16:86544113..86544145,+!p1@FOXF1!0.92!9.30!FOXF1;;chr2:239756671..239756732,+!p1@TWIST2!0.91!23.66!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!0.91!12.33!TWIST2;;chr11:65687158..65687216,+!p4@DRAP1!0.90!41.45!DRAP1;;chr16:86600870..86600921,+!p2@FOXC2!0.90!6.87!FOXC2;;chr11:65687243..65687276,+!p8@DRAP1!0.88!9.10!DRAP1;;chr11:34642612..34642646,+!p1@EHF!0.88!6.67!EHF;;chr12:66218923..66218934,+!p14@HMGA2!0.87!6.47!HMGA2;;chr18:19749386..19749404,+!p2@GATA6!0.86!9.10!GATA6;;chr1:170632959..170632987,+!p4@PRRX1!0.85!6.67!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.85!6.07!PRRX1;;chr5:72744445..72744466,-!p2@FOXD1!0.84!10.31!FOXD1;;chr7:150945865..150945896,-!p4@SMARCD3!0.84!5.86!SMARCD3;;chr12:66218836..66218888,+!p1@HMGA2!0.83!58.23!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!0.82!15.77!HMGA2;;chr15:67430351..67430366,+!p10@SMAD3!0.82!5.66!SMAD3;;chr19:47523058..47523114,+!p1@NPAS1!0.82!5.66!NPAS1;;chr4:174451370..174451387,-!p1@HAND2!0.82!5.66!HAND2;;chr11:65686776..65686787,+!p9@DRAP1!0.81!6.67!DRAP1;;chr21:38071403..38071428,+!p2@SIM2!0.81!5.46!SIM2;;chr6:34204973..34204990,+!p4@HMGA1!0.79!74.40!HMGA1;;chr17:59477233..59477263,+!p1@TBX2!0.78!16.78!TBX2;;chr12:66218904..66218913,+!p11@HMGA2!0.78!5.05!HMGA2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.77!383.34!TAX1BP3;;chr11:65686952..65686975,+!p5@DRAP1!0.77!29.52!DRAP1;;chr12:66218598..66218645,+!p2@HMGA2!0.77!24.46!HMGA2;;chr1:151032860..151032918,+!p1@MLLT11!0.75!60.65!MLLT11;;chr16:86600458..86600461,+!p3@FOXC2!0.75!4.65!FOXC2;;chr22:38598086..38598105,+!p1@MAFF!0.73!51.56!MAFF;;chr10:94449703..94449718,+!p1@HHEX!0.73!18.60!HHEX;;chr8:106330656..106330684,+!p1@ZFPM2!0.73!12.33!ZFPM2;;chr5:72743793..72743855,-!p4@FOXD1!0.72!5.05!FOXD1;;chr6:34204672..34204692,+!p1@HMGA1!0.71!530.12!HMGA1;;chr20:50721803..50721857,-!p2@ZFP64!0.70!6.67!ZFP64;;chr15:67430381..67430396,+!p21@SMAD3!0.70!4.04!SMAD3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.69!55.20!ZC3H12A;;chr17:59477275..59477286,+!p3@TBX2!0.68!5.26!TBX2;;chr15:83953397..83953425,-!p1@BNC1!0.68!4.45!BNC1;;chr1:170633100..170633112,+!p19@PRRX1!0.68!3.84!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!0.67!94.22!AEBP1;;chr12:53614115..53614154,-!p1@RARG!0.67!22.64!RARG;;chr20:42543441..42543497,+!p1@TOX2!0.67!19.01!TOX2;;chr17:1959369..1959388,+!p2@HIC1!0.67!10.72!HIC1;;chr8:106330696..106330719,+!p2@ZFPM2!0.67!4.85!ZFPM2;;chr11:46299443..46299459,+!p4@CREB3L1!0.67!3.64!CREB3L1;;chr2:71127699..71127744,+!p1@VAX2!0.66!8.09!VAX2;;chr7:44143978..44143989,+!p2@AEBP1!0.66!7.08!AEBP1;;chr9:35732592..35732640,+!p1@CREB3!0.65!53.98!CREB3;;chr12:57504975..57505019,-!p2@STAT6!0.65!16.17!STAT6;;chr3:52001448..52001478,-!p2@PCBP4!0.64!55.60!PCBP4;;chr6:34205372..34205412,+!p5@HMGA1!0.64!20.02!HMGA1;;chr1:151032922..151032951,+!p2@MLLT11!0.64!6.07!MLLT11;;chr8:145159846..145159889,+!p6@MAF1!0.64!5.05!MAF1;;chr4:81118647..81118666,+!p1@PRDM8!0.64!4.65!PRDM8;;chr11:46299186..46299195,+!p3@CREB3L1!0.64!3.84!CREB3L1;;chr7:35293685..35293718,-!p1@TBX20!0.63!3.23!TBX20;;chr8:55370720..55370733,+!p2@SOX17!0.63!3.23!SOX17;;chr9:35732514..35732530,+!p5@CREB3!0.62!4.85!CREB3;;chr4:2263809..2263854,-!p1@MXD4!0.61!143.95!MXD4;;chr12:124873852..124873881,-!p3@NCOR2!0.61!22.04!NCOR2;;chr8:72756063..72756125,-!p1@MSC!0.61!6.87!MSC;;chr8:72756637..72756664,-!p3@MSC!0.61!3.64!MSC;;chr1:8938709..8938720,-!p3@ENO1!0.60!176.71!ENO1;;chr5:321810..321877,+!p1@AHRR!0.60!10.92!AHRR;;chr15:96876966..96877017,+!p12@NR2F2!0.60!4.65!NR2F2;;chr5:72744562..72744573,-!p3@FOXD1!0.60!3.84!FOXD1;;chr10:8096772..8096787,+!p2@GATA3!0.60!3.64!GATA3;;chr11:65430554..65430579,-!p3@RELA!0.59!8.49!RELA;;chr16:67881588..67881612,-!p2@CENPT!0.59!4.25!CENPT;;chr6:126070769..126070801,+!p1@HEY2!0.59!3.44!HEY2;;chr17:46622070..46622109,-!p1@HOXB2!0.58!7.08!HOXB2;;chr12:125002827..125002855,-!p5@NCOR2!0.58!4.25!NCOR2;;chr11:32457075..32457095,-!p1@WT1!0.58!2.83!WT1;;chr15:67458491..67458505,+!p18@SMAD3!0.58!2.83!SMAD3;;chr8:25902876..25902936,-!p1@EBF2!0.58!2.83!EBF2;;chr2:85981107..85981120,+!p3@ATOH8!0.58!2.83!ATOH8;;chr19:42636586..42636607,-!p1@POU2F2!0.57!8.69!POU2F2;;chr19:47922750..47922795,-!p1@MEIS3!0.57!4.85!MEIS3;;chr17:46622205..46622218,-!p3@HOXB2!0.57!3.23!HOXB2;;chr17:1958388..1958404,+!p1@HIC1!0.56!20.42!HIC1;;chr19:13134772..13134822,+!p2@NFIX!0.56!4.25!NFIX;;chr15:67458861..67458879,+!p17@SMAD3!0.56!2.63!SMAD3;;chr10:131762504..131762555,-!p1@EBF3!0.56!2.63!EBF3;;chr9:16705069..16705086,-!p3@BNC2!0.56!2.63!BNC2;;chr7:19157043..19157088,-!p2@TWIST1!0.55!7.48!TWIST1;;chr6:10415276..10415341,-!p2@TFAP2A!0.55!3.23!TFAP2A;;chr16:29819446..29819471,+!p9@MAZ!0.54!8.69!MAZ;;chr7:150946015..150946070,-!p3@SMARCD3!0.54!6.27!SMARCD3;;chr18:19749517..19749531,+!p3@GATA6!0.54!5.05!GATA6;;chr17:46622440..46622477,-!p5@HOXB2!0.54!2.83!HOXB2;;chr5:92918919..92918942,+!p1@NR2F1!0.53!13.14!NR2F1;;chr3:52001426..52001447,-!p3@PCBP4!0.53!8.09!PCBP4;;chr2:242576431..242576458,-!p3@THAP4!0.53!6.87!THAP4;;chr18:53068911..53068935,-!p4@TCF4!0.53!2.83!TCF4;;chr19:13136057..13136085,+!p11@NFIX!0.53!2.43!NFIX;;chr5:139492456..139492489,+!p7@PURA!0.53!2.43!PURA;;chr5:2751762..2751784,-!p1@IRX2!0.53!2.43!IRX2;;chr12:66218420..66218439,+!p12@HMGA2!0.53!2.43!HMGA2;;chr11:65686855..65686946,+!p1@DRAP1!0.52!225.23!DRAP1;;chr17:46621937..46621966,-!p2@HOXB2!0.52!7.48!HOXB2;;chr2:121493425..121493474,+!p1@GLI2!0.52!6.07!GLI2;;chr16:54320101..54320125,-!p4@IRX3!0.52!3.64!IRX3;;chr8:72756213..72756243,-!p5@MSC!0.52!3.23!MSC;;chr19:16435625..16435682,+!p1@KLF2!0.51!94.82!KLF2;;chr11:62368696..62368759,-!p4@MTA2!0.51!17.79!MTA2;;chr20:39946361..39946379,-!p2@ZHX3!0.51!8.09!ZHX3;;chr15:96874244..96874259,+!p5@NR2F2!0.51!6.47!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.51!4.65!ZFP106;;chr12:80085061..80085119,-!p6@PAWR!0.51!4.04!PAWR;;chr3:157823517..157823562,-!p1@SHOX2!0.51!2.43!SHOX2;;chr2:114036488..114036504,-!p1@PAX8!0.51!2.22!PAX8;;chr19:46801639..46801699,+!p1@HIF3A!0.51!2.22!HIF3A;;chr18:45663490..45663528,-!p2@ZBTB7C!0.51!2.22!ZBTB7C;;chr1:8763440..8763460,-!p2@RERE!0.50!14.15!RERE;;chr20:42543506..42543549,+!p2@TOX2!0.50!6.27!TOX2;;chr8:72756667..72756736,-!p2@MSC!0.50!3.84!MSC;;chr16:54320158..54320200,-!p5@IRX3!0.50!3.44!IRX3;;chr1:23885981..23886002,-!p1@ID3!0.49!489.89!ID3;;chr1:8938766..8938774,-!p2@ENO1!0.49!195.51!ENO1;;chr19:13106214..13106382,+!p1@NFIX!0.49!65.51!NFIX;;chr17:3571887..3571918,-!p2@TAX1BP3!0.49!31.14!TAX1BP3;;chr20:48599506..48599526,+!p1@SNAI1!0.49!17.59!SNAI1;;chr8:145159277..145159282,+!p7@MAF1!0.49!3.64!MAF1;;chr12:7079780..7079791,-!p2@PHB2!0.48!13.95!PHB2;;chr22:41697497..41697515,+!p2@ZC3H7B!0.48!6.87!ZC3H7B;;chr2:85981222..85981259,+!p2@ATOH8!0.48!3.84!ATOH8;;chr22:38598042..38598052,+!p4@MAFF!0.48!3.64!MAFF;;chr17:41622925..41622976,-!p3@ETV4!0.48!3.44!ETV4;;chr7:44143997..44144008,+!p3@AEBP1!0.48!2.83!AEBP1;;chr8:77593448..77593471,+!p2@ZFHX4!0.48!2.02!ZFHX4;;chr15:96869165..96869183,+!p20@NR2F2!0.48!2.02!NR2F2;;chr17:41622731..41622764,-!p5@ETV4!0.48!2.02!ETV4;;chr21:38071462..38071474,+!p3@SIM2!0.48!2.02!SIM2;;chr11:65429891..65429915,-!p7@RELA!0.48!2.02!RELA;;chr12:54447637..54447659,+!p4@HOXC4!0.48!2.02!HOXC4;;chr22:41721853..41721874,+!p6@ZC3H7B!0.48!2.02!ZC3H7B;;chr2:119604456..119604501,-!p2@EN1!0.48!2.02!EN1;;chr3:25469815..25469866,+!p3@RARB!0.48!2.02!RARB;;chr3:25470156..25470227,+!p2@RARB!0.48!2.02!RARB;;chr15:96869255..96869291,+!p6@NR2F2!0.47!4.25!NR2F2;;chr2:200322654..200322707,-!p2@SATB2!0.47!3.23!SATB2;;chr17:40719165..40719168,+!p4@MLX!0.47!2.63!MLX;;chr17:46622229..46622257,-!p6@HOXB2!0.47!2.43!HOXB2;;chr14:62162258..62162269,+!p2@HIF1A!0.46!25.07!HIF1A;;chr8:128749984..128750033,+!p4@MYC!0.46!8.90!MYC;;chr7:19157248..19157268,-!p1@TWIST1!0.46!6.67!TWIST1;;chr22:38598057..38598071,+!p3@MAFF!0.46!5.46!MAFF;;chr1:8938736..8938756,-!p1@ENO1!0.45!2814.78!ENO1;;chr19:1863568..1863586,-!p1@KLF16!0.45!84.11!KLF16;;chr19:3366570..3366619,+!p1@NFIC!0.45!81.48!NFIC;;chr3:141087393..141087426,+!p3@ZBTB38!0.45!9.70!ZBTB38;;chr17:41622765..41622821,-!p2@ETV4!0.45!3.23!ETV4;;chr17:46622114..46622138,-!p4@HOXB2!0.45!3.23!HOXB2;;chr3:25469724..25469773,+!p1@RARB!0.45!3.03!RARB;;chr12:66218212..66218244,+!p5@HMGA2!0.45!3.03!HMGA2;;chr8:72756267..72756296,-!p4@MSC!0.45!3.03!MSC;;chr8:72755987..72756002,-!p7@MSC!0.45!1.82!MSC;;chr11:125034605..125034636,+!p2@PKNOX2!0.45!1.82!PKNOX2;;chr12:115122318..115122331,-!p2@TBX3!0.45!1.82!TBX3;;chr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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002592;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003498;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor1.CNhs11088.11286-116I8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor1.CNhs11088.11286-116I8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor1.CNhs11088.11286-116I8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor1.CNhs11088.11286-116I8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor1.CNhs11088.11286-116I8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11286-116I8 | |id=FF:11286-116I8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000172 | ||
|is_obsolete= | |||
|library_id=CNhs11088 | |||
|library_id_phase_based=2:CNhs11088 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11286 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.GTAGAG.11286 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11286 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.GTAGAG.11286 | |||
|name=Smooth Muscle Cells - Coronary Artery, donor1 | |name=Smooth Muscle Cells - Coronary Artery, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11088,LSID724,release008,COMPLETED | |profile_hcage=CNhs11088,LSID724,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10014,,, | |profile_srnaseq=SRhi10014,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=CA350-R10a | |rna_catalog_number=CA350-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116I8 | |rna_tube_id=116I8 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10014.GTAGAG | |||
|sample_age=41 | |sample_age=41 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 105: | ||
|sample_tissue=coronary artery | |sample_tissue=coronary artery | ||
|top_motifs=GTF2A1,2:1.80389289945;EBF1:1.35266679083;HES1:1.33598480427;HOX{A5,B5}:1.25394854712;TLX1..3_NFIC{dimer}:1.23485925202;IKZF1:1.22815829015;CRX:1.19255830006;ZNF148:1.14289357611;PPARG:1.10880195216;SRF:1.06532785826;ZNF238:1.01771266429;NFE2L1:1.0149890277;GCM1,2:0.990196560564;TFCP2:0.982843169845;bHLH_family:0.966236692444;GLI1..3:0.930539690716;ZBTB6:0.839544393121;XCPE1{core}:0.811552962971;TBP:0.799619886644;MYBL2:0.789651872073;LHX3,4:0.776990099977;TEAD1:0.749404443544;HIF1A:0.725199113127;EN1,2:0.718044758108;TP53:0.71159587534;ONECUT1,2:0.693865686834;FOX{I1,J2}:0.683184814705;ZNF423:0.676316814588;FOXL1:0.670782888038;SMAD1..7,9:0.665692663364;NR3C1:0.665023638671;HMX1:0.662493201112;HSF1,2:0.65478217197;TAL1_TCF{3,4,12}:0.613250654332;TFAP4:0.596910426145;NFATC1..3:0.5912860283;TBX4,5:0.581539170069;HAND1,2:0.578348622834;GFI1B:0.568339200736;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.566079901326;NFE2L2:0.563308355279;NKX2-2,8:0.539558998566;ADNP_IRX_SIX_ZHX:0.525733361405;HIC1:0.506562089053;PAX8:0.477245481389;TFAP2B:0.47311271283;BACH2:0.46916193268;FOS_FOS{B,L1}_JUN{B,D}:0.464482280389;PBX1:0.424798628833;NHLH1,2:0.415982931557;KLF4:0.415524541992;HOX{A6,A7,B6,B7}:0.378044983057;STAT5{A,B}:0.369040606069;POU2F1..3:0.365697060703;HLF:0.36346263908;GTF2I:0.354471135882;ALX4:0.353227683307;REST:0.347794001641;FOSL2:0.345811414667;SOX{8,9,10}:0.3448821705;LEF1_TCF7_TCF7L1,2:0.342372999044;XBP1:0.33441075797;TFAP2{A,C}:0.325714852812;SOX17:0.324562283346;ZIC1..3:0.321817644901;POU3F1..4:0.276492097803;NR5A1,2:0.275647836858;GZF1:0.274073036931;ELK1,4_GABP{A,B1}:0.260241208053;NKX3-2:0.24951733155;NFIX:0.241775137888;POU1F1:0.235027247156;JUN:0.229818024049;MAFB:0.215421857547;SPZ1:0.214441765258;ZNF384:0.195166145458;ATF6:0.184452981828;MTF1:0.177744115387;NFE2:0.172483928152;SP1:0.170246352605;CEBPA,B_DDIT3:0.164735903556;HNF1A:0.163939348169;PAX5:0.161900793527;HBP1_HMGB_SSRP1_UBTF:0.157148853559;AR:0.146398611897;ESRRA:0.134991994186;CDC5L:0.132628802151;GATA6:0.131162886623;FOXQ1:0.127704347978;MZF1:0.119449440641;TLX2:0.0845418879426;MEF2{A,B,C,D}:0.0606931397381;PRRX1,2:0.0509369953436;PAX1,9:0.0214603315937;NANOG:0.00810515672433;RXRA_VDR{dimer}:0.000424609325412;ETS1,2:-0.00421269421151;PATZ1:-0.00630635695353;VSX1,2:-0.010738747491;DBP:-0.0382390334368;MTE{core}:-0.0436571159531;RXR{A,B,G}:-0.050999670895;MYFfamily:-0.0576791864109;NFKB1_REL_RELA:-0.069179494039;GATA4:-0.0794849086075;HMGA1,2:-0.0798406713757;NFIL3:-0.0809585538774;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0988148024733;HOX{A4,D4}:-0.107873480749;PAX2:-0.11128735843;SOX2:-0.114153426221;EP300:-0.119665551371;EVI1:-0.12615648678;RREB1:-0.132094903122;RUNX1..3:-0.144132334824;ESR1:-0.155188141934;UFEwm:-0.157097500485;POU6F1:-0.176029021274;PRDM1:-0.177664971634;RFX1:-0.181328543821;ELF1,2,4:-0.205594964785;POU5F1:-0.206706226374;STAT2,4,6:-0.207518632291;MAZ:-0.207812469169;MED-1{core}:-0.213621356347;FOXM1:-0.217223507733;ZNF143:-0.236159316593;EGR1..3:-0.240326338415;ARID5B:-0.254069833094;YY1:-0.273904476771;HNF4A_NR2F1,2:-0.274021157453;LMO2:-0.295034270547;TFDP1:-0.317221477967;HOXA9_MEIS1:-0.339351591347;SPIB:-0.340053051062;NANOG{mouse}:-0.342523145441;MYOD1:-0.366439629439;SPI1:-0.366441738426;TGIF1:-0.373143031276;PAX6:-0.376023576274;MYB:-0.378708019066;AIRE:-0.380495340574;GFI1:-0.386966642804;NKX2-3_NKX2-5:-0.389997831399;NRF1:-0.419480055255;ZFP161:-0.44687577285;NR6A1:-0.477527085488;FOXD3:-0.483756739424;ALX1:-0.484829784711;NKX3-1:-0.516638500543;SNAI1..3:-0.529899840483;TOPORS:-0.532415220351;OCT4_SOX2{dimer}:-0.535613470713;FOXA2:-0.538499942163;DMAP1_NCOR{1,2}_SMARC:-0.550639147213;AHR_ARNT_ARNT2:-0.57347505864;E2F1..5:-0.574521954307;NFY{A,B,C}:-0.583073108996;PAX3,7:-0.587128677531;PITX1..3:-0.606919936624;ATF2:-0.611683400381;IRF1,2:-0.614243646443;RORA:-0.621236268392;FOXO1,3,4:-0.627067461816;ZEB1:-0.63543813477;FOX{F1,F2,J1}:-0.636734455766;NR1H4:-0.640568914809;T:-0.667007399548;SOX5:-0.685069048249;FOX{D1,D2}:-0.733377898689;ATF5_CREB3:-0.738764022853;TEF:-0.755470075868;IRF7:-0.799381430589;CUX2:-0.894255122115;SREBF1,2:-0.928819888904;IKZF2:-0.937303287595;BREu{core}:-0.938760029083;NKX2-1,4:-0.979344716745;CREB1:-1.01607641453;RFX2..5_RFXANK_RFXAP:-1.02943490381;PAX4:-1.06340919209;FOXP1:-1.09255300232;ATF4:-1.10892225653;PDX1:-1.17726224531;NKX6-1,2:-1.18261547836;FOXP3:-1.19246167275;CDX1,2,4:-1.28095421021;STAT1,3:-1.29988434909;BPTF:-1.35075992515;RBPJ:-1.40466635517;FOXN1:-1.41191197633;ZBTB16:-1.51343772566 | |top_motifs=GTF2A1,2:1.80389289945;EBF1:1.35266679083;HES1:1.33598480427;HOX{A5,B5}:1.25394854712;TLX1..3_NFIC{dimer}:1.23485925202;IKZF1:1.22815829015;CRX:1.19255830006;ZNF148:1.14289357611;PPARG:1.10880195216;SRF:1.06532785826;ZNF238:1.01771266429;NFE2L1:1.0149890277;GCM1,2:0.990196560564;TFCP2:0.982843169845;bHLH_family:0.966236692444;GLI1..3:0.930539690716;ZBTB6:0.839544393121;XCPE1{core}:0.811552962971;TBP:0.799619886644;MYBL2:0.789651872073;LHX3,4:0.776990099977;TEAD1:0.749404443544;HIF1A:0.725199113127;EN1,2:0.718044758108;TP53:0.71159587534;ONECUT1,2:0.693865686834;FOX{I1,J2}:0.683184814705;ZNF423:0.676316814588;FOXL1:0.670782888038;SMAD1..7,9:0.665692663364;NR3C1:0.665023638671;HMX1:0.662493201112;HSF1,2:0.65478217197;TAL1_TCF{3,4,12}:0.613250654332;TFAP4:0.596910426145;NFATC1..3:0.5912860283;TBX4,5:0.581539170069;HAND1,2:0.578348622834;GFI1B:0.568339200736;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.566079901326;NFE2L2:0.563308355279;NKX2-2,8:0.539558998566;ADNP_IRX_SIX_ZHX:0.525733361405;HIC1:0.506562089053;PAX8:0.477245481389;TFAP2B:0.47311271283;BACH2:0.46916193268;FOS_FOS{B,L1}_JUN{B,D}:0.464482280389;PBX1:0.424798628833;NHLH1,2:0.415982931557;KLF4:0.415524541992;HOX{A6,A7,B6,B7}:0.378044983057;STAT5{A,B}:0.369040606069;POU2F1..3:0.365697060703;HLF:0.36346263908;GTF2I:0.354471135882;ALX4:0.353227683307;REST:0.347794001641;FOSL2:0.345811414667;SOX{8,9,10}:0.3448821705;LEF1_TCF7_TCF7L1,2:0.342372999044;XBP1:0.33441075797;TFAP2{A,C}:0.325714852812;SOX17:0.324562283346;ZIC1..3:0.321817644901;POU3F1..4:0.276492097803;NR5A1,2:0.275647836858;GZF1:0.274073036931;ELK1,4_GABP{A,B1}:0.260241208053;NKX3-2:0.24951733155;NFIX:0.241775137888;POU1F1:0.235027247156;JUN:0.229818024049;MAFB:0.215421857547;SPZ1:0.214441765258;ZNF384:0.195166145458;ATF6:0.184452981828;MTF1:0.177744115387;NFE2:0.172483928152;SP1:0.170246352605;CEBPA,B_DDIT3:0.164735903556;HNF1A:0.163939348169;PAX5:0.161900793527;HBP1_HMGB_SSRP1_UBTF:0.157148853559;AR:0.146398611897;ESRRA:0.134991994186;CDC5L:0.132628802151;GATA6:0.131162886623;FOXQ1:0.127704347978;MZF1:0.119449440641;TLX2:0.0845418879426;MEF2{A,B,C,D}:0.0606931397381;PRRX1,2:0.0509369953436;PAX1,9:0.0214603315937;NANOG:0.00810515672433;RXRA_VDR{dimer}:0.000424609325412;ETS1,2:-0.00421269421151;PATZ1:-0.00630635695353;VSX1,2:-0.010738747491;DBP:-0.0382390334368;MTE{core}:-0.0436571159531;RXR{A,B,G}:-0.050999670895;MYFfamily:-0.0576791864109;NFKB1_REL_RELA:-0.069179494039;GATA4:-0.0794849086075;HMGA1,2:-0.0798406713757;NFIL3:-0.0809585538774;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0988148024733;HOX{A4,D4}:-0.107873480749;PAX2:-0.11128735843;SOX2:-0.114153426221;EP300:-0.119665551371;EVI1:-0.12615648678;RREB1:-0.132094903122;RUNX1..3:-0.144132334824;ESR1:-0.155188141934;UFEwm:-0.157097500485;POU6F1:-0.176029021274;PRDM1:-0.177664971634;RFX1:-0.181328543821;ELF1,2,4:-0.205594964785;POU5F1:-0.206706226374;STAT2,4,6:-0.207518632291;MAZ:-0.207812469169;MED-1{core}:-0.213621356347;FOXM1:-0.217223507733;ZNF143:-0.236159316593;EGR1..3:-0.240326338415;ARID5B:-0.254069833094;YY1:-0.273904476771;HNF4A_NR2F1,2:-0.274021157453;LMO2:-0.295034270547;TFDP1:-0.317221477967;HOXA9_MEIS1:-0.339351591347;SPIB:-0.340053051062;NANOG{mouse}:-0.342523145441;MYOD1:-0.366439629439;SPI1:-0.366441738426;TGIF1:-0.373143031276;PAX6:-0.376023576274;MYB:-0.378708019066;AIRE:-0.380495340574;GFI1:-0.386966642804;NKX2-3_NKX2-5:-0.389997831399;NRF1:-0.419480055255;ZFP161:-0.44687577285;NR6A1:-0.477527085488;FOXD3:-0.483756739424;ALX1:-0.484829784711;NKX3-1:-0.516638500543;SNAI1..3:-0.529899840483;TOPORS:-0.532415220351;OCT4_SOX2{dimer}:-0.535613470713;FOXA2:-0.538499942163;DMAP1_NCOR{1,2}_SMARC:-0.550639147213;AHR_ARNT_ARNT2:-0.57347505864;E2F1..5:-0.574521954307;NFY{A,B,C}:-0.583073108996;PAX3,7:-0.587128677531;PITX1..3:-0.606919936624;ATF2:-0.611683400381;IRF1,2:-0.614243646443;RORA:-0.621236268392;FOXO1,3,4:-0.627067461816;ZEB1:-0.63543813477;FOX{F1,F2,J1}:-0.636734455766;NR1H4:-0.640568914809;T:-0.667007399548;SOX5:-0.685069048249;FOX{D1,D2}:-0.733377898689;ATF5_CREB3:-0.738764022853;TEF:-0.755470075868;IRF7:-0.799381430589;CUX2:-0.894255122115;SREBF1,2:-0.928819888904;IKZF2:-0.937303287595;BREu{core}:-0.938760029083;NKX2-1,4:-0.979344716745;CREB1:-1.01607641453;RFX2..5_RFXANK_RFXAP:-1.02943490381;PAX4:-1.06340919209;FOXP1:-1.09255300232;ATF4:-1.10892225653;PDX1:-1.17726224531;NKX6-1,2:-1.18261547836;FOXP3:-1.19246167275;CDX1,2,4:-1.28095421021;STAT1,3:-1.29988434909;BPTF:-1.35075992515;RBPJ:-1.40466635517;FOXN1:-1.41191197633;ZBTB16:-1.51343772566 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11286-116I8;search_select_hide=table117:FF:11286-116I8 | |||
}} | }} | ||
Latest revision as of 16:31, 3 June 2020
| Name: | Smooth Muscle Cells - Coronary Artery, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11088 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11088
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11088
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.905 |
| 10 | 10 | 0.144 |
| 100 | 100 | 0.9 |
| 101 | 101 | 0.637 |
| 102 | 102 | 0.95 |
| 103 | 103 | 0.524 |
| 104 | 104 | 0.339 |
| 105 | 105 | 0.378 |
| 106 | 106 | 0.0454 |
| 107 | 107 | 0.0273 |
| 108 | 108 | 0.608 |
| 109 | 109 | 0.0876 |
| 11 | 11 | 0.101 |
| 110 | 110 | 0.504 |
| 111 | 111 | 0.448 |
| 112 | 112 | 0.624 |
| 113 | 113 | 0.215 |
| 114 | 114 | 0.314 |
| 115 | 115 | 0.688 |
| 116 | 116 | 0.0643 |
| 117 | 117 | 0.799 |
| 118 | 118 | 0.697 |
| 119 | 119 | 0.34 |
| 12 | 12 | 0.697 |
| 120 | 120 | 0.203 |
| 121 | 121 | 0.421 |
| 122 | 122 | 0.428 |
| 123 | 123 | 0.0341 |
| 124 | 124 | 0.961 |
| 125 | 125 | 0.69 |
| 126 | 126 | 0.902 |
| 127 | 127 | 0.732 |
| 128 | 128 | 0.204 |
| 129 | 129 | 0.601 |
| 13 | 13 | 0.985 |
| 130 | 130 | 0.245 |
| 131 | 131 | 0.137 |
| 132 | 132 | 0.409 |
| 133 | 133 | 0.911 |
| 134 | 134 | 0.15 |
| 135 | 135 | 0.246 |
| 136 | 136 | 0.852 |
| 137 | 137 | 0.297 |
| 138 | 138 | 0.494 |
| 139 | 139 | 0.32 |
| 14 | 14 | 0.553 |
| 140 | 140 | 0.585 |
| 141 | 141 | 0.42 |
| 142 | 142 | 0.941 |
| 143 | 143 | 0.0365 |
| 144 | 144 | 0.999 |
| 145 | 145 | 0.17 |
| 146 | 146 | 0.363 |
| 147 | 147 | 0.192 |
| 148 | 148 | 0.914 |
| 149 | 149 | 0.153 |
| 15 | 15 | 0.684 |
| 150 | 150 | 0.128 |
| 151 | 151 | 0.482 |
| 152 | 152 | 0.00846 |
| 153 | 153 | 0.396 |
| 154 | 154 | 0.25 |
| 155 | 155 | 0.0162 |
| 156 | 156 | 0.96 |
| 157 | 157 | 0.833 |
| 158 | 158 | 0.0311 |
| 159 | 159 | 0.286 |
| 16 | 16 | 0.249 |
| 160 | 160 | 0.0936 |
| 161 | 161 | 0.567 |
| 162 | 162 | 0.755 |
| 163 | 163 | 0.941 |
| 164 | 164 | 0.856 |
| 165 | 165 | 0.559 |
| 166 | 166 | 0.753 |
| 167 | 167 | 0.466 |
| 168 | 168 | 0.478 |
| 169 | 169 | 0.0682 |
| 17 | 17 | 0.103 |
| 18 | 18 | 0.12 |
| 19 | 19 | 0.159 |
| 2 | 2 | 0.397 |
| 20 | 20 | 0.353 |
| 21 | 21 | 0.584 |
| 22 | 22 | 0.142 |
| 23 | 23 | 0.145 |
| 24 | 24 | 0.198 |
| 25 | 25 | 0.272 |
| 26 | 26 | 0.264 |
| 27 | 27 | 0.484 |
| 28 | 28 | 0.227 |
| 29 | 29 | 0.861 |
| 3 | 3 | 0.519 |
| 30 | 30 | 0.118 |
| 31 | 31 | 0.52 |
| 32 | 32 | 0.0451 |
| 33 | 33 | 0.846 |
| 34 | 34 | 0.201 |
| 35 | 35 | 0.924 |
| 36 | 36 | 0.781 |
| 37 | 37 | 0.154 |
| 38 | 38 | 0.541 |
| 39 | 39 | 0.255 |
| 4 | 4 | 0.744 |
| 40 | 40 | 0.159 |
| 41 | 41 | 0.795 |
| 42 | 42 | 0.649 |
| 43 | 43 | 0.387 |
| 44 | 44 | 0.829 |
| 45 | 45 | 0.172 |
| 46 | 46 | 0.257 |
| 47 | 47 | 0.406 |
| 48 | 48 | 0.18 |
| 49 | 49 | 0.683 |
| 5 | 5 | 0.766 |
| 50 | 50 | 0.395 |
| 51 | 51 | 0.773 |
| 52 | 52 | 0.554 |
| 53 | 53 | 0.609 |
| 54 | 54 | 0.502 |
| 55 | 55 | 0.259 |
| 56 | 56 | 0.511 |
| 57 | 57 | 0.588 |
| 58 | 58 | 0.548 |
| 59 | 59 | 0.0937 |
| 6 | 6 | 0.741 |
| 60 | 60 | 0.592 |
| 61 | 61 | 0.938 |
| 62 | 62 | 0.706 |
| 63 | 63 | 0.274 |
| 64 | 64 | 0.503 |
| 65 | 65 | 0.144 |
| 66 | 66 | 0.391 |
| 67 | 67 | 0.996 |
| 68 | 68 | 0.291 |
| 69 | 69 | 0.359 |
| 7 | 7 | 0.813 |
| 70 | 70 | 0.279 |
| 71 | 71 | 0.304 |
| 72 | 72 | 0.825 |
| 73 | 73 | 0.0037 |
| 74 | 74 | 0.699 |
| 75 | 75 | 0.563 |
| 76 | 76 | 0.346 |
| 77 | 77 | 0.00375 |
| 78 | 78 | 0.603 |
| 79 | 79 | 0.337 |
| 8 | 8 | 0.0866 |
| 80 | 80 | 0.303 |
| 81 | 81 | 0.806 |
| 82 | 82 | 0.639 |
| 83 | 83 | 0.988 |
| 84 | 84 | 0.97 |
| 85 | 85 | 0.149 |
| 86 | 86 | 0.879 |
| 87 | 87 | 0.0275 |
| 88 | 88 | 0.182 |
| 89 | 89 | 0.0659 |
| 9 | 9 | 0.149 |
| 90 | 90 | 0.136 |
| 91 | 91 | 0.46 |
| 92 | 92 | 0.569 |
| 93 | 93 | 0.903 |
| 94 | 94 | 0.769 |
| 95 | 95 | 0.111 |
| 96 | 96 | 0.898 |
| 97 | 97 | 0.25 |
| 98 | 98 | 0.856 |
| 99 | 99 | 0.00571 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11088
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000172 human smooth muscle cell of coronary artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000359 (vascular associated smooth muscle cell)
0002592 (smooth muscle cell of the coronary artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0004573 (systemic artery)
0003498 (heart blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0005985 (coronary vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001621 (coronary artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000172 (human smooth muscle cell of coronary artery sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
