FF:11286-116I8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005888 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005888 | ||
|accession_numbers=CAGE;DRX008486;DRR009358;DRZ000783;DRZ002168;DRZ012133;DRZ013518 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037240;DRR041606;DRZ007248 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0010314,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0004573,UBERON:0003498,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0005985,UBERON:0010317,UBERON:0007798,UBERON:0001621,UBERON:0004535,UBERON:0004571,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002494,CL:0000359,CL:0002592 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000172 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.89!76.02!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.58!37.00!SIM2;;chr11:65686802..65686818,+!p6@DRAP1!1.53!55.60!DRAP1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.49!29.72!ZBED1;;chr11:46299199..46299233,+!p1@CREB3L1!1.45!135.66!CREB3L1;;chr16:86600426..86600441,+!p1@FOXC2!1.43!63.08!FOXC2;;chr11:46299539..46299620,+!p2@CREB3L1!1.35!36.19!CREB3L1;;chr20:30433396..30433414,-!p1@FOXS1!1.33!20.22!FOXS1;;chr11:65687362..65687436,+!p3@DRAP1!1.32!89.57!DRAP1;;chr2:19558373..19558392,-!p1@OSR1!1.30!51.35!OSR1;;chr6:34204921..34204939,+!p3@HMGA1!1.28!529.11!HMGA1;;chr6:134210243..134210257,+!p1@TCF21!1.26!17.39!TCF21;;chr11:65686732..65686756,+!p2@DRAP1!1.25!69.55!DRAP1;;chr18:19749541..19749557,+!p1@GATA6!1.16!42.46!GATA6;;chr15:67418047..67418093,+!p4@SMAD3!1.10!14.76!SMAD3;;chr11:65687222..65687240,+!p7@DRAP1!1.09!14.56!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!1.08!43.47!FOSL1;;chr20:6748325..6748352,+!p1@BMP2!1.03!14.15!BMP2;;chr7:1577899..1577943,+!p3@MAFK!1.02!9.50!MAFK;;chr8:11561684..11561751,+!p1@GATA4!1.01!9.30!GATA4;;chr4:174450089..174450153,-!p2@HAND2!0.99!8.69!HAND2;;chr1:170632285..170632309,+!p1@PRRX1!0.98!9.70!PRRX1;;chr5:72744594..72744609,-!p1@FOXD1!0.97!39.02!FOXD1;;chr1:170633262..170633285,+!p3@PRRX1!0.97!9.50!PRRX1;;chr11:65667846..65667868,-!p1@FOSL1!0.96!220.78!FOSL1;;chr1:170633348..170633399,+!p2@PRRX1!0.96!11.32!PRRX1;;chr15:67418177..67418204,+!p9@SMAD3!0.96!8.09!SMAD3;;chr15:67418119..67418162,+!p5@SMAD3!0.95!8.90!SMAD3;;chr12:124873357..124873401,-!p1@NCOR2!0.94!92.40!NCOR2;;chr9:35732647..35732678,+!p2@CREB3!0.92!42.66!CREB3;;chr16:86544113..86544145,+!p1@FOXF1!0.92!9.30!FOXF1;;chr2:239756671..239756732,+!p1@TWIST2!0.91!23.66!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!0.91!12.33!TWIST2;;chr11:65687158..65687216,+!p4@DRAP1!0.90!41.45!DRAP1;;chr16:86600870..86600921,+!p2@FOXC2!0.90!6.87!FOXC2;;chr11:65687243..65687276,+!p8@DRAP1!0.88!9.10!DRAP1;;chr11:34642612..34642646,+!p1@EHF!0.88!6.67!EHF;;chr12:66218923..66218934,+!p14@HMGA2!0.87!6.47!HMGA2;;chr18:19749386..19749404,+!p2@GATA6!0.86!9.10!GATA6;;chr1:170632959..170632987,+!p4@PRRX1!0.85!6.67!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.85!6.07!PRRX1;;chr5:72744445..72744466,-!p2@FOXD1!0.84!10.31!FOXD1;;chr7:150945865..150945896,-!p4@SMARCD3!0.84!5.86!SMARCD3;;chr12:66218836..66218888,+!p1@HMGA2!0.83!58.23!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!0.82!15.77!HMGA2;;chr15:67430351..67430366,+!p10@SMAD3!0.82!5.66!SMAD3;;chr19:47523058..47523114,+!p1@NPAS1!0.82!5.66!NPAS1;;chr4:174451370..174451387,-!p1@HAND2!0.82!5.66!HAND2;;chr11:65686776..65686787,+!p9@DRAP1!0.81!6.67!DRAP1;;chr21:38071403..38071428,+!p2@SIM2!0.81!5.46!SIM2;;chr6:34204973..34204990,+!p4@HMGA1!0.79!74.40!HMGA1;;chr17:59477233..59477263,+!p1@TBX2!0.78!16.78!TBX2;;chr12:66218904..66218913,+!p11@HMGA2!0.78!5.05!HMGA2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.77!383.34!TAX1BP3;;chr11:65686952..65686975,+!p5@DRAP1!0.77!29.52!DRAP1;;chr12:66218598..66218645,+!p2@HMGA2!0.77!24.46!HMGA2;;chr1:151032860..151032918,+!p1@MLLT11!0.75!60.65!MLLT11;;chr16:86600458..86600461,+!p3@FOXC2!0.75!4.65!FOXC2;;chr22:38598086..38598105,+!p1@MAFF!0.73!51.56!MAFF;;chr10:94449703..94449718,+!p1@HHEX!0.73!18.60!HHEX;;chr8:106330656..106330684,+!p1@ZFPM2!0.73!12.33!ZFPM2;;chr5:72743793..72743855,-!p4@FOXD1!0.72!5.05!FOXD1;;chr6:34204672..34204692,+!p1@HMGA1!0.71!530.12!HMGA1;;chr20:50721803..50721857,-!p2@ZFP64!0.70!6.67!ZFP64;;chr15:67430381..67430396,+!p21@SMAD3!0.70!4.04!SMAD3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.69!55.20!ZC3H12A;;chr17:59477275..59477286,+!p3@TBX2!0.68!5.26!TBX2;;chr15:83953397..83953425,-!p1@BNC1!0.68!4.45!BNC1;;chr1:170633100..170633112,+!p19@PRRX1!0.68!3.84!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!0.67!94.22!AEBP1;;chr12:53614115..53614154,-!p1@RARG!0.67!22.64!RARG;;chr20:42543441..42543497,+!p1@TOX2!0.67!19.01!TOX2;;chr17:1959369..1959388,+!p2@HIC1!0.67!10.72!HIC1;;chr8:106330696..106330719,+!p2@ZFPM2!0.67!4.85!ZFPM2;;chr11:46299443..46299459,+!p4@CREB3L1!0.67!3.64!CREB3L1;;chr2:71127699..71127744,+!p1@VAX2!0.66!8.09!VAX2;;chr7:44143978..44143989,+!p2@AEBP1!0.66!7.08!AEBP1;;chr9:35732592..35732640,+!p1@CREB3!0.65!53.98!CREB3;;chr12:57504975..57505019,-!p2@STAT6!0.65!16.17!STAT6;;chr3:52001448..52001478,-!p2@PCBP4!0.64!55.60!PCBP4;;chr6:34205372..34205412,+!p5@HMGA1!0.64!20.02!HMGA1;;chr1:151032922..151032951,+!p2@MLLT11!0.64!6.07!MLLT11;;chr8:145159846..145159889,+!p6@MAF1!0.64!5.05!MAF1;;chr4:81118647..81118666,+!p1@PRDM8!0.64!4.65!PRDM8;;chr11:46299186..46299195,+!p3@CREB3L1!0.64!3.84!CREB3L1;;chr7:35293685..35293718,-!p1@TBX20!0.63!3.23!TBX20;;chr8:55370720..55370733,+!p2@SOX17!0.63!3.23!SOX17;;chr9:35732514..35732530,+!p5@CREB3!0.62!4.85!CREB3;;chr4:2263809..2263854,-!p1@MXD4!0.61!143.95!MXD4;;chr12:124873852..124873881,-!p3@NCOR2!0.61!22.04!NCOR2;;chr8:72756063..72756125,-!p1@MSC!0.61!6.87!MSC;;chr8:72756637..72756664,-!p3@MSC!0.61!3.64!MSC;;chr1:8938709..8938720,-!p3@ENO1!0.60!176.71!ENO1;;chr5:321810..321877,+!p1@AHRR!0.60!10.92!AHRR;;chr15:96876966..96877017,+!p12@NR2F2!0.60!4.65!NR2F2;;chr5:72744562..72744573,-!p3@FOXD1!0.60!3.84!FOXD1;;chr10:8096772..8096787,+!p2@GATA3!0.60!3.64!GATA3;;chr11:65430554..65430579,-!p3@RELA!0.59!8.49!RELA;;chr16:67881588..67881612,-!p2@CENPT!0.59!4.25!CENPT;;chr6:126070769..126070801,+!p1@HEY2!0.59!3.44!HEY2;;chr17:46622070..46622109,-!p1@HOXB2!0.58!7.08!HOXB2;;chr12:125002827..125002855,-!p5@NCOR2!0.58!4.25!NCOR2;;chr11:32457075..32457095,-!p1@WT1!0.58!2.83!WT1;;chr15:67458491..67458505,+!p18@SMAD3!0.58!2.83!SMAD3;;chr8:25902876..25902936,-!p1@EBF2!0.58!2.83!EBF2;;chr2:85981107..85981120,+!p3@ATOH8!0.58!2.83!ATOH8;;chr19:42636586..42636607,-!p1@POU2F2!0.57!8.69!POU2F2;;chr19:47922750..47922795,-!p1@MEIS3!0.57!4.85!MEIS3;;chr17:46622205..46622218,-!p3@HOXB2!0.57!3.23!HOXB2;;chr17:1958388..1958404,+!p1@HIC1!0.56!20.42!HIC1;;chr19:13134772..13134822,+!p2@NFIX!0.56!4.25!NFIX;;chr15:67458861..67458879,+!p17@SMAD3!0.56!2.63!SMAD3;;chr10:131762504..131762555,-!p1@EBF3!0.56!2.63!EBF3;;chr9:16705069..16705086,-!p3@BNC2!0.56!2.63!BNC2;;chr7:19157043..19157088,-!p2@TWIST1!0.55!7.48!TWIST1;;chr6:10415276..10415341,-!p2@TFAP2A!0.55!3.23!TFAP2A;;chr16:29819446..29819471,+!p9@MAZ!0.54!8.69!MAZ;;chr7:150946015..150946070,-!p3@SMARCD3!0.54!6.27!SMARCD3;;chr18:19749517..19749531,+!p3@GATA6!0.54!5.05!GATA6;;chr17:46622440..46622477,-!p5@HOXB2!0.54!2.83!HOXB2;;chr5:92918919..92918942,+!p1@NR2F1!0.53!13.14!NR2F1;;chr3:52001426..52001447,-!p3@PCBP4!0.53!8.09!PCBP4;;chr2:242576431..242576458,-!p3@THAP4!0.53!6.87!THAP4;;chr18:53068911..53068935,-!p4@TCF4!0.53!2.83!TCF4;;chr19:13136057..13136085,+!p11@NFIX!0.53!2.43!NFIX;;chr5:139492456..139492489,+!p7@PURA!0.53!2.43!PURA;;chr5:2751762..2751784,-!p1@IRX2!0.53!2.43!IRX2;;chr12:66218420..66218439,+!p12@HMGA2!0.53!2.43!HMGA2;;chr11:65686855..65686946,+!p1@DRAP1!0.52!225.23!DRAP1;;chr17:46621937..46621966,-!p2@HOXB2!0.52!7.48!HOXB2;;chr2:121493425..121493474,+!p1@GLI2!0.52!6.07!GLI2;;chr16:54320101..54320125,-!p4@IRX3!0.52!3.64!IRX3;;chr8:72756213..72756243,-!p5@MSC!0.52!3.23!MSC;;chr19:16435625..16435682,+!p1@KLF2!0.51!94.82!KLF2;;chr11:62368696..62368759,-!p4@MTA2!0.51!17.79!MTA2;;chr20:39946361..39946379,-!p2@ZHX3!0.51!8.09!ZHX3;;chr15:96874244..96874259,+!p5@NR2F2!0.51!6.47!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.51!4.65!ZFP106;;chr12:80085061..80085119,-!p6@PAWR!0.51!4.04!PAWR;;chr3:157823517..157823562,-!p1@SHOX2!0.51!2.43!SHOX2;;chr2:114036488..114036504,-!p1@PAX8!0.51!2.22!PAX8;;chr19:46801639..46801699,+!p1@HIF3A!0.51!2.22!HIF3A;;chr18:45663490..45663528,-!p2@ZBTB7C!0.51!2.22!ZBTB7C;;chr1:8763440..8763460,-!p2@RERE!0.50!14.15!RERE;;chr20:42543506..42543549,+!p2@TOX2!0.50!6.27!TOX2;;chr8:72756667..72756736,-!p2@MSC!0.50!3.84!MSC;;chr16:54320158..54320200,-!p5@IRX3!0.50!3.44!IRX3;;chr1:23885981..23886002,-!p1@ID3!0.49!489.89!ID3;;chr1:8938766..8938774,-!p2@ENO1!0.49!195.51!ENO1;;chr19:13106214..13106382,+!p1@NFIX!0.49!65.51!NFIX;;chr17:3571887..3571918,-!p2@TAX1BP3!0.49!31.14!TAX1BP3;;chr20:48599506..48599526,+!p1@SNAI1!0.49!17.59!SNAI1;;chr8:145159277..145159282,+!p7@MAF1!0.49!3.64!MAF1;;chr12:7079780..7079791,-!p2@PHB2!0.48!13.95!PHB2;;chr22:41697497..41697515,+!p2@ZC3H7B!0.48!6.87!ZC3H7B;;chr2:85981222..85981259,+!p2@ATOH8!0.48!3.84!ATOH8;;chr22:38598042..38598052,+!p4@MAFF!0.48!3.64!MAFF;;chr17:41622925..41622976,-!p3@ETV4!0.48!3.44!ETV4;;chr7:44143997..44144008,+!p3@AEBP1!0.48!2.83!AEBP1;;chr8:77593448..77593471,+!p2@ZFHX4!0.48!2.02!ZFHX4;;chr15:96869165..96869183,+!p20@NR2F2!0.48!2.02!NR2F2;;chr17:41622731..41622764,-!p5@ETV4!0.48!2.02!ETV4;;chr21:38071462..38071474,+!p3@SIM2!0.48!2.02!SIM2;;chr11:65429891..65429915,-!p7@RELA!0.48!2.02!RELA;;chr12:54447637..54447659,+!p4@HOXC4!0.48!2.02!HOXC4;;chr22:41721853..41721874,+!p6@ZC3H7B!0.48!2.02!ZC3H7B;;chr2:119604456..119604501,-!p2@EN1!0.48!2.02!EN1;;chr3:25469815..25469866,+!p3@RARB!0.48!2.02!RARB;;chr3:25470156..25470227,+!p2@RARB!0.48!2.02!RARB;;chr15:96869255..96869291,+!p6@NR2F2!0.47!4.25!NR2F2;;chr2:200322654..200322707,-!p2@SATB2!0.47!3.23!SATB2;;chr17:40719165..40719168,+!p4@MLX!0.47!2.63!MLX;;chr17:46622229..46622257,-!p6@HOXB2!0.47!2.43!HOXB2;;chr14:62162258..62162269,+!p2@HIF1A!0.46!25.07!HIF1A;;chr8:128749984..128750033,+!p4@MYC!0.46!8.90!MYC;;chr7:19157248..19157268,-!p1@TWIST1!0.46!6.67!TWIST1;;chr22:38598057..38598071,+!p3@MAFF!0.46!5.46!MAFF;;chr1:8938736..8938756,-!p1@ENO1!0.45!2814.78!ENO1;;chr19:1863568..1863586,-!p1@KLF16!0.45!84.11!KLF16;;chr19:3366570..3366619,+!p1@NFIC!0.45!81.48!NFIC;;chr3:141087393..141087426,+!p3@ZBTB38!0.45!9.70!ZBTB38;;chr17:41622765..41622821,-!p2@ETV4!0.45!3.23!ETV4;;chr17:46622114..46622138,-!p4@HOXB2!0.45!3.23!HOXB2;;chr3:25469724..25469773,+!p1@RARB!0.45!3.03!RARB;;chr12:66218212..66218244,+!p5@HMGA2!0.45!3.03!HMGA2;;chr8:72756267..72756296,-!p4@MSC!0.45!3.03!MSC;;chr8:72755987..72756002,-!p7@MSC!0.45!1.82!MSC;;chr11:125034605..125034636,+!p2@PKNOX2!0.45!1.82!PKNOX2;;chr12:115122318..115122331,-!p2@TBX3!0.45!1.82!TBX3;;chr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| |expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.89!76.02!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.58!37.00!SIM2;;chr11:65686802..65686818,+!p6@DRAP1!1.53!55.60!DRAP1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.49!29.72!ZBED1;;chr11:46299199..46299233,+!p1@CREB3L1!1.45!135.66!CREB3L1;;chr16:86600426..86600441,+!p1@FOXC2!1.43!63.08!FOXC2;;chr11:46299539..46299620,+!p2@CREB3L1!1.35!36.19!CREB3L1;;chr20:30433396..30433414,-!p1@FOXS1!1.33!20.22!FOXS1;;chr11:65687362..65687436,+!p3@DRAP1!1.32!89.57!DRAP1;;chr2:19558373..19558392,-!p1@OSR1!1.30!51.35!OSR1;;chr6:34204921..34204939,+!p3@HMGA1!1.28!529.11!HMGA1;;chr6:134210243..134210257,+!p1@TCF21!1.26!17.39!TCF21;;chr11:65686732..65686756,+!p2@DRAP1!1.25!69.55!DRAP1;;chr18:19749541..19749557,+!p1@GATA6!1.16!42.46!GATA6;;chr15:67418047..67418093,+!p4@SMAD3!1.10!14.76!SMAD3;;chr11:65687222..65687240,+!p7@DRAP1!1.09!14.56!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!1.08!43.47!FOSL1;;chr20:6748325..6748352,+!p1@BMP2!1.03!14.15!BMP2;;chr7:1577899..1577943,+!p3@MAFK!1.02!9.50!MAFK;;chr8:11561684..11561751,+!p1@GATA4!1.01!9.30!GATA4;;chr4:174450089..174450153,-!p2@HAND2!0.99!8.69!HAND2;;chr1:170632285..170632309,+!p1@PRRX1!0.98!9.70!PRRX1;;chr5:72744594..72744609,-!p1@FOXD1!0.97!39.02!FOXD1;;chr1:170633262..170633285,+!p3@PRRX1!0.97!9.50!PRRX1;;chr11:65667846..65667868,-!p1@FOSL1!0.96!220.78!FOSL1;;chr1:170633348..170633399,+!p2@PRRX1!0.96!11.32!PRRX1;;chr15:67418177..67418204,+!p9@SMAD3!0.96!8.09!SMAD3;;chr15:67418119..67418162,+!p5@SMAD3!0.95!8.90!SMAD3;;chr12:124873357..124873401,-!p1@NCOR2!0.94!92.40!NCOR2;;chr9:35732647..35732678,+!p2@CREB3!0.92!42.66!CREB3;;chr16:86544113..86544145,+!p1@FOXF1!0.92!9.30!FOXF1;;chr2:239756671..239756732,+!p1@TWIST2!0.91!23.66!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!0.91!12.33!TWIST2;;chr11:65687158..65687216,+!p4@DRAP1!0.90!41.45!DRAP1;;chr16:86600870..86600921,+!p2@FOXC2!0.90!6.87!FOXC2;;chr11:65687243..65687276,+!p8@DRAP1!0.88!9.10!DRAP1;;chr11:34642612..34642646,+!p1@EHF!0.88!6.67!EHF;;chr12:66218923..66218934,+!p14@HMGA2!0.87!6.47!HMGA2;;chr18:19749386..19749404,+!p2@GATA6!0.86!9.10!GATA6;;chr1:170632959..170632987,+!p4@PRRX1!0.85!6.67!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.85!6.07!PRRX1;;chr5:72744445..72744466,-!p2@FOXD1!0.84!10.31!FOXD1;;chr7:150945865..150945896,-!p4@SMARCD3!0.84!5.86!SMARCD3;;chr12:66218836..66218888,+!p1@HMGA2!0.83!58.23!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!0.82!15.77!HMGA2;;chr15:67430351..67430366,+!p10@SMAD3!0.82!5.66!SMAD3;;chr19:47523058..47523114,+!p1@NPAS1!0.82!5.66!NPAS1;;chr4:174451370..174451387,-!p1@HAND2!0.82!5.66!HAND2;;chr11:65686776..65686787,+!p9@DRAP1!0.81!6.67!DRAP1;;chr21:38071403..38071428,+!p2@SIM2!0.81!5.46!SIM2;;chr6:34204973..34204990,+!p4@HMGA1!0.79!74.40!HMGA1;;chr17:59477233..59477263,+!p1@TBX2!0.78!16.78!TBX2;;chr12:66218904..66218913,+!p11@HMGA2!0.78!5.05!HMGA2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.77!383.34!TAX1BP3;;chr11:65686952..65686975,+!p5@DRAP1!0.77!29.52!DRAP1;;chr12:66218598..66218645,+!p2@HMGA2!0.77!24.46!HMGA2;;chr1:151032860..151032918,+!p1@MLLT11!0.75!60.65!MLLT11;;chr16:86600458..86600461,+!p3@FOXC2!0.75!4.65!FOXC2;;chr22:38598086..38598105,+!p1@MAFF!0.73!51.56!MAFF;;chr10:94449703..94449718,+!p1@HHEX!0.73!18.60!HHEX;;chr8:106330656..106330684,+!p1@ZFPM2!0.73!12.33!ZFPM2;;chr5:72743793..72743855,-!p4@FOXD1!0.72!5.05!FOXD1;;chr6:34204672..34204692,+!p1@HMGA1!0.71!530.12!HMGA1;;chr20:50721803..50721857,-!p2@ZFP64!0.70!6.67!ZFP64;;chr15:67430381..67430396,+!p21@SMAD3!0.70!4.04!SMAD3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.69!55.20!ZC3H12A;;chr17:59477275..59477286,+!p3@TBX2!0.68!5.26!TBX2;;chr15:83953397..83953425,-!p1@BNC1!0.68!4.45!BNC1;;chr1:170633100..170633112,+!p19@PRRX1!0.68!3.84!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!0.67!94.22!AEBP1;;chr12:53614115..53614154,-!p1@RARG!0.67!22.64!RARG;;chr20:42543441..42543497,+!p1@TOX2!0.67!19.01!TOX2;;chr17:1959369..1959388,+!p2@HIC1!0.67!10.72!HIC1;;chr8:106330696..106330719,+!p2@ZFPM2!0.67!4.85!ZFPM2;;chr11:46299443..46299459,+!p4@CREB3L1!0.67!3.64!CREB3L1;;chr2:71127699..71127744,+!p1@VAX2!0.66!8.09!VAX2;;chr7:44143978..44143989,+!p2@AEBP1!0.66!7.08!AEBP1;;chr9:35732592..35732640,+!p1@CREB3!0.65!53.98!CREB3;;chr12:57504975..57505019,-!p2@STAT6!0.65!16.17!STAT6;;chr3:52001448..52001478,-!p2@PCBP4!0.64!55.60!PCBP4;;chr6:34205372..34205412,+!p5@HMGA1!0.64!20.02!HMGA1;;chr1:151032922..151032951,+!p2@MLLT11!0.64!6.07!MLLT11;;chr8:145159846..145159889,+!p6@MAF1!0.64!5.05!MAF1;;chr4:81118647..81118666,+!p1@PRDM8!0.64!4.65!PRDM8;;chr11:46299186..46299195,+!p3@CREB3L1!0.64!3.84!CREB3L1;;chr7:35293685..35293718,-!p1@TBX20!0.63!3.23!TBX20;;chr8:55370720..55370733,+!p2@SOX17!0.63!3.23!SOX17;;chr9:35732514..35732530,+!p5@CREB3!0.62!4.85!CREB3;;chr4:2263809..2263854,-!p1@MXD4!0.61!143.95!MXD4;;chr12:124873852..124873881,-!p3@NCOR2!0.61!22.04!NCOR2;;chr8:72756063..72756125,-!p1@MSC!0.61!6.87!MSC;;chr8:72756637..72756664,-!p3@MSC!0.61!3.64!MSC;;chr1:8938709..8938720,-!p3@ENO1!0.60!176.71!ENO1;;chr5:321810..321877,+!p1@AHRR!0.60!10.92!AHRR;;chr15:96876966..96877017,+!p12@NR2F2!0.60!4.65!NR2F2;;chr5:72744562..72744573,-!p3@FOXD1!0.60!3.84!FOXD1;;chr10:8096772..8096787,+!p2@GATA3!0.60!3.64!GATA3;;chr11:65430554..65430579,-!p3@RELA!0.59!8.49!RELA;;chr16:67881588..67881612,-!p2@CENPT!0.59!4.25!CENPT;;chr6:126070769..126070801,+!p1@HEY2!0.59!3.44!HEY2;;chr17:46622070..46622109,-!p1@HOXB2!0.58!7.08!HOXB2;;chr12:125002827..125002855,-!p5@NCOR2!0.58!4.25!NCOR2;;chr11:32457075..32457095,-!p1@WT1!0.58!2.83!WT1;;chr15:67458491..67458505,+!p18@SMAD3!0.58!2.83!SMAD3;;chr8:25902876..25902936,-!p1@EBF2!0.58!2.83!EBF2;;chr2:85981107..85981120,+!p3@ATOH8!0.58!2.83!ATOH8;;chr19:42636586..42636607,-!p1@POU2F2!0.57!8.69!POU2F2;;chr19:47922750..47922795,-!p1@MEIS3!0.57!4.85!MEIS3;;chr17:46622205..46622218,-!p3@HOXB2!0.57!3.23!HOXB2;;chr17:1958388..1958404,+!p1@HIC1!0.56!20.42!HIC1;;chr19:13134772..13134822,+!p2@NFIX!0.56!4.25!NFIX;;chr15:67458861..67458879,+!p17@SMAD3!0.56!2.63!SMAD3;;chr10:131762504..131762555,-!p1@EBF3!0.56!2.63!EBF3;;chr9:16705069..16705086,-!p3@BNC2!0.56!2.63!BNC2;;chr7:19157043..19157088,-!p2@TWIST1!0.55!7.48!TWIST1;;chr6:10415276..10415341,-!p2@TFAP2A!0.55!3.23!TFAP2A;;chr16:29819446..29819471,+!p9@MAZ!0.54!8.69!MAZ;;chr7:150946015..150946070,-!p3@SMARCD3!0.54!6.27!SMARCD3;;chr18:19749517..19749531,+!p3@GATA6!0.54!5.05!GATA6;;chr17:46622440..46622477,-!p5@HOXB2!0.54!2.83!HOXB2;;chr5:92918919..92918942,+!p1@NR2F1!0.53!13.14!NR2F1;;chr3:52001426..52001447,-!p3@PCBP4!0.53!8.09!PCBP4;;chr2:242576431..242576458,-!p3@THAP4!0.53!6.87!THAP4;;chr18:53068911..53068935,-!p4@TCF4!0.53!2.83!TCF4;;chr19:13136057..13136085,+!p11@NFIX!0.53!2.43!NFIX;;chr5:139492456..139492489,+!p7@PURA!0.53!2.43!PURA;;chr5:2751762..2751784,-!p1@IRX2!0.53!2.43!IRX2;;chr12:66218420..66218439,+!p12@HMGA2!0.53!2.43!HMGA2;;chr11:65686855..65686946,+!p1@DRAP1!0.52!225.23!DRAP1;;chr17:46621937..46621966,-!p2@HOXB2!0.52!7.48!HOXB2;;chr2:121493425..121493474,+!p1@GLI2!0.52!6.07!GLI2;;chr16:54320101..54320125,-!p4@IRX3!0.52!3.64!IRX3;;chr8:72756213..72756243,-!p5@MSC!0.52!3.23!MSC;;chr19:16435625..16435682,+!p1@KLF2!0.51!94.82!KLF2;;chr11:62368696..62368759,-!p4@MTA2!0.51!17.79!MTA2;;chr20:39946361..39946379,-!p2@ZHX3!0.51!8.09!ZHX3;;chr15:96874244..96874259,+!p5@NR2F2!0.51!6.47!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.51!4.65!ZFP106;;chr12:80085061..80085119,-!p6@PAWR!0.51!4.04!PAWR;;chr3:157823517..157823562,-!p1@SHOX2!0.51!2.43!SHOX2;;chr2:114036488..114036504,-!p1@PAX8!0.51!2.22!PAX8;;chr19:46801639..46801699,+!p1@HIF3A!0.51!2.22!HIF3A;;chr18:45663490..45663528,-!p2@ZBTB7C!0.51!2.22!ZBTB7C;;chr1:8763440..8763460,-!p2@RERE!0.50!14.15!RERE;;chr20:42543506..42543549,+!p2@TOX2!0.50!6.27!TOX2;;chr8:72756667..72756736,-!p2@MSC!0.50!3.84!MSC;;chr16:54320158..54320200,-!p5@IRX3!0.50!3.44!IRX3;;chr1:23885981..23886002,-!p1@ID3!0.49!489.89!ID3;;chr1:8938766..8938774,-!p2@ENO1!0.49!195.51!ENO1;;chr19:13106214..13106382,+!p1@NFIX!0.49!65.51!NFIX;;chr17:3571887..3571918,-!p2@TAX1BP3!0.49!31.14!TAX1BP3;;chr20:48599506..48599526,+!p1@SNAI1!0.49!17.59!SNAI1;;chr8:145159277..145159282,+!p7@MAF1!0.49!3.64!MAF1;;chr12:7079780..7079791,-!p2@PHB2!0.48!13.95!PHB2;;chr22:41697497..41697515,+!p2@ZC3H7B!0.48!6.87!ZC3H7B;;chr2:85981222..85981259,+!p2@ATOH8!0.48!3.84!ATOH8;;chr22:38598042..38598052,+!p4@MAFF!0.48!3.64!MAFF;;chr17:41622925..41622976,-!p3@ETV4!0.48!3.44!ETV4;;chr7:44143997..44144008,+!p3@AEBP1!0.48!2.83!AEBP1;;chr8:77593448..77593471,+!p2@ZFHX4!0.48!2.02!ZFHX4;;chr15:96869165..96869183,+!p20@NR2F2!0.48!2.02!NR2F2;;chr17:41622731..41622764,-!p5@ETV4!0.48!2.02!ETV4;;chr21:38071462..38071474,+!p3@SIM2!0.48!2.02!SIM2;;chr11:65429891..65429915,-!p7@RELA!0.48!2.02!RELA;;chr12:54447637..54447659,+!p4@HOXC4!0.48!2.02!HOXC4;;chr22:41721853..41721874,+!p6@ZC3H7B!0.48!2.02!ZC3H7B;;chr2:119604456..119604501,-!p2@EN1!0.48!2.02!EN1;;chr3:25469815..25469866,+!p3@RARB!0.48!2.02!RARB;;chr3:25470156..25470227,+!p2@RARB!0.48!2.02!RARB;;chr15:96869255..96869291,+!p6@NR2F2!0.47!4.25!NR2F2;;chr2:200322654..200322707,-!p2@SATB2!0.47!3.23!SATB2;;chr17:40719165..40719168,+!p4@MLX!0.47!2.63!MLX;;chr17:46622229..46622257,-!p6@HOXB2!0.47!2.43!HOXB2;;chr14:62162258..62162269,+!p2@HIF1A!0.46!25.07!HIF1A;;chr8:128749984..128750033,+!p4@MYC!0.46!8.90!MYC;;chr7:19157248..19157268,-!p1@TWIST1!0.46!6.67!TWIST1;;chr22:38598057..38598071,+!p3@MAFF!0.46!5.46!MAFF;;chr1:8938736..8938756,-!p1@ENO1!0.45!2814.78!ENO1;;chr19:1863568..1863586,-!p1@KLF16!0.45!84.11!KLF16;;chr19:3366570..3366619,+!p1@NFIC!0.45!81.48!NFIC;;chr3:141087393..141087426,+!p3@ZBTB38!0.45!9.70!ZBTB38;;chr17:41622765..41622821,-!p2@ETV4!0.45!3.23!ETV4;;chr17:46622114..46622138,-!p4@HOXB2!0.45!3.23!HOXB2;;chr3:25469724..25469773,+!p1@RARB!0.45!3.03!RARB;;chr12:66218212..66218244,+!p5@HMGA2!0.45!3.03!HMGA2;;chr8:72756267..72756296,-!p4@MSC!0.45!3.03!MSC;;chr8:72755987..72756002,-!p7@MSC!0.45!1.82!MSC;;chr11:125034605..125034636,+!p2@PKNOX2!0.45!1.82!PKNOX2;;chr12:115122318..115122331,-!p2@TBX3!0.45!1.82!TBX3;;chr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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002592;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003498;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor1.CNhs11088.11286-116I8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor1.CNhs11088.11286-116I8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor1.CNhs11088.11286-116I8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor1.CNhs11088.11286-116I8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor1.CNhs11088.11286-116I8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11286-116I8 | |id=FF:11286-116I8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000172 | ||
|is_obsolete= | |||
|library_id=CNhs11088 | |||
|library_id_phase_based=2:CNhs11088 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11286 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.GTAGAG.11286 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11286 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.GTAGAG.11286 | |||
|name=Smooth Muscle Cells - Coronary Artery, donor1 | |name=Smooth Muscle Cells - Coronary Artery, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11088,LSID724,release008,COMPLETED | |profile_hcage=CNhs11088,LSID724,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10014,,, | |profile_srnaseq=SRhi10014,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=CA350-R10a | |rna_catalog_number=CA350-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116I8 | |rna_tube_id=116I8 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10014.GTAGAG | |||
|sample_age=41 | |sample_age=41 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.72944007912536e-205!GO:0005737;cytoplasm;6.61362034045008e-198!GO:0043226;organelle;1.71212458824112e-157!GO:0043229;intracellular organelle;2.90079490832687e-157!GO:0043231;intracellular membrane-bound organelle;5.06967670215354e-155!GO:0043227;membrane-bound organelle;1.1018106126403e-154!GO:0044444;cytoplasmic part;1.68667986855956e-145!GO:0044422;organelle part;9.33352646585914e-126!GO:0044446;intracellular organelle part;1.95746554483275e-124!GO:0032991;macromolecular complex;1.48842818993677e-86!GO:0005515;protein binding;6.57848111965497e-82!GO:0030529;ribonucleoprotein complex;1.86383087967297e-77!GO:0044238;primary metabolic process;2.16211848159756e-71!GO:0044237;cellular metabolic process;2.60815231908375e-70!GO:0005739;mitochondrion;4.46021273010821e-69!GO:0043233;organelle lumen;9.20697765164947e-66!GO:0031974;membrane-enclosed lumen;9.20697765164947e-66!GO:0043170;macromolecule metabolic process;2.21102828831722e-62!GO:0044428;nuclear part;4.65934062218066e-56!GO:0003723;RNA binding;5.22212541155339e-56!GO:0031090;organelle membrane;5.76094465257596e-53!GO:0019538;protein metabolic process;3.26927279430207e-50!GO:0006412;translation;7.57780767294769e-50!GO:0005840;ribosome;1.19108989487922e-49!GO:0044429;mitochondrial part;2.09331381288485e-46!GO:0016043;cellular component organization and biogenesis;2.12041404680308e-45!GO:0009058;biosynthetic process;2.78202344454867e-45!GO:0005634;nucleus;1.41019991233124e-44!GO:0044260;cellular macromolecule metabolic process;3.41341786667029e-44!GO:0003735;structural constituent of ribosome;9.77361206146658e-44!GO:0044267;cellular protein metabolic process;1.20173386054963e-43!GO:0044249;cellular biosynthetic process;4.71907114882617e-43!GO:0043234;protein complex;4.71907114882617e-43!GO:0015031;protein transport;5.07944331227865e-43!GO:0033036;macromolecule localization;8.03665140412079e-42!GO:0005829;cytosol;1.51399830752864e-40!GO:0045184;establishment of protein localization;6.7839928898724e-40!GO:0009059;macromolecule biosynthetic process;7.96760821431738e-40!GO:0008104;protein localization;2.92912442654289e-39!GO:0006396;RNA processing;5.44597255288715e-39!GO:0031967;organelle envelope;1.28430121199907e-38!GO:0031975;envelope;3.15692608206878e-38!GO:0033279;ribosomal subunit;1.68707588089913e-37!GO:0031981;nuclear lumen;8.0487889209728e-37!GO:0046907;intracellular transport;5.88210439996359e-34!GO:0005740;mitochondrial envelope;9.55018563102124e-32!GO:0031966;mitochondrial membrane;9.52593917562942e-30!GO:0006886;intracellular protein transport;2.66063130108571e-29!GO:0006996;organelle organization and biogenesis;1.04668501537879e-28!GO:0043283;biopolymer metabolic process;1.59652939816494e-28!GO:0016071;mRNA metabolic process;1.64326338002148e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.84099300756869e-28!GO:0019866;organelle inner membrane;3.01738444824876e-27!GO:0065003;macromolecular complex assembly;4.65143683562727e-27!GO:0008380;RNA splicing;7.50965149126472e-27!GO:0005743;mitochondrial inner membrane;2.07631282075269e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.33503499858407e-26!GO:0010467;gene expression;4.92490857622383e-26!GO:0043228;non-membrane-bound organelle;1.27199877646459e-25!GO:0043232;intracellular non-membrane-bound organelle;1.27199877646459e-25!GO:0006397;mRNA processing;1.06955184876319e-24!GO:0022607;cellular component assembly;1.12682915794167e-24!GO:0044445;cytosolic part;5.97979662510993e-23!GO:0006119;oxidative phosphorylation;1.80532706483784e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.9999394592642e-22!GO:0005783;endoplasmic reticulum;2.67349081039158e-22!GO:0051649;establishment of cellular localization;1.23849721979821e-21!GO:0051641;cellular localization;1.37757870559378e-21!GO:0044455;mitochondrial membrane part;4.94086253819886e-21!GO:0005654;nucleoplasm;1.54672308820374e-20!GO:0005681;spliceosome;2.94092879104954e-20!GO:0015934;large ribosomal subunit;5.77480401759766e-20!GO:0012505;endomembrane system;6.14267223109534e-20!GO:0006457;protein folding;2.06666803532959e-19!GO:0048770;pigment granule;1.02908350531674e-18!GO:0042470;melanosome;1.02908350531674e-18!GO:0015935;small ribosomal subunit;1.80427085764542e-18!GO:0016462;pyrophosphatase activity;2.33994962905544e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.8408060526632e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;3.97121398359856e-18!GO:0017111;nucleoside-triphosphatase activity;6.60893773372037e-18!GO:0005730;nucleolus;7.16005182417022e-18!GO:0031980;mitochondrial lumen;8.18624250684875e-18!GO:0005759;mitochondrial matrix;8.18624250684875e-18!GO:0044432;endoplasmic reticulum part;8.96228286787114e-18!GO:0005794;Golgi apparatus;1.08343560934882e-17!GO:0000166;nucleotide binding;1.52467934785943e-17!GO:0044451;nucleoplasm part;4.8404156479772e-17!GO:0005746;mitochondrial respiratory chain;5.09899386082343e-17!GO:0051186;cofactor metabolic process;5.53755842686815e-17!GO:0006259;DNA metabolic process;8.96021113818628e-17!GO:0016874;ligase activity;2.02135644413331e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.53195240419247e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.76092358117549e-15!GO:0006605;protein targeting;2.09307692422672e-15!GO:0016192;vesicle-mediated transport;4.18217113249193e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.08840019430489e-14!GO:0003954;NADH dehydrogenase activity;1.08840019430489e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.08840019430489e-14!GO:0043285;biopolymer catabolic process;1.18278573349344e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.32034450063131e-14!GO:0022618;protein-RNA complex assembly;2.01946628602745e-14!GO:0008134;transcription factor binding;2.0372663742076e-14!GO:0044265;cellular macromolecule catabolic process;2.40208400642736e-14!GO:0009057;macromolecule catabolic process;2.43042391142313e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.4571230093599e-14!GO:0048193;Golgi vesicle transport;9.19253191871306e-14!GO:0006512;ubiquitin cycle;1.05606315573416e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.47966192913791e-13!GO:0051082;unfolded protein binding;1.53987224052559e-13!GO:0008135;translation factor activity, nucleic acid binding;1.62470666877732e-13!GO:0044248;cellular catabolic process;1.98676642143314e-13!GO:0042775;organelle ATP synthesis coupled electron transport;3.16132318181184e-13!GO:0042773;ATP synthesis coupled electron transport;3.16132318181184e-13!GO:0030964;NADH dehydrogenase complex (quinone);4.2916341631301e-13!GO:0045271;respiratory chain complex I;4.2916341631301e-13!GO:0005747;mitochondrial respiratory chain complex I;4.2916341631301e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;4.69066758627845e-13!GO:0005761;mitochondrial ribosome;5.27665529340411e-13!GO:0000313;organellar ribosome;5.27665529340411e-13!GO:0030163;protein catabolic process;6.09770158303411e-13!GO:0006732;coenzyme metabolic process;6.87429027244918e-13!GO:0019941;modification-dependent protein catabolic process;7.918080532144e-13!GO:0043632;modification-dependent macromolecule catabolic process;7.918080532144e-13!GO:0044257;cellular protein catabolic process;1.01441765279808e-12!GO:0017076;purine nucleotide binding;1.3729831535737e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.3729831535737e-12!GO:0007049;cell cycle;1.53406998142571e-12!GO:0032553;ribonucleotide binding;1.53553310617357e-12!GO:0032555;purine ribonucleotide binding;1.53553310617357e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.57481278998061e-12!GO:0042254;ribosome biogenesis and assembly;2.84795301134691e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.22145747443703e-12!GO:0043412;biopolymer modification;3.4769384064848e-12!GO:0009055;electron carrier activity;5.2325369858509e-12!GO:0005789;endoplasmic reticulum membrane;7.49840010216252e-12!GO:0012501;programmed cell death;1.07758793933554e-11!GO:0009259;ribonucleotide metabolic process;1.8196760495942e-11!GO:0005793;ER-Golgi intermediate compartment;1.89296332486882e-11!GO:0006915;apoptosis;1.99264538080922e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;2.89185149951463e-11!GO:0000375;RNA splicing, via transesterification reactions;2.89185149951463e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.89185149951463e-11!GO:0006464;protein modification process;4.96243652590609e-11!GO:0006163;purine nucleotide metabolic process;6.45333531508913e-11!GO:0009150;purine ribonucleotide metabolic process;6.99168499530597e-11!GO:0048523;negative regulation of cellular process;2.21873353679659e-10!GO:0008219;cell death;2.48851825921836e-10!GO:0016265;death;2.48851825921836e-10!GO:0009260;ribonucleotide biosynthetic process;2.98425079960163e-10!GO:0006164;purine nucleotide biosynthetic process;3.68388449637263e-10!GO:0009152;purine ribonucleotide biosynthetic process;3.7692327733941e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.30333215649495e-10!GO:0003743;translation initiation factor activity;4.57410563343401e-10!GO:0006913;nucleocytoplasmic transport;4.57410563343401e-10!GO:0003712;transcription cofactor activity;8.46583890638381e-10!GO:0005524;ATP binding;8.81967784598739e-10!GO:0051169;nuclear transport;1.11189591469581e-09!GO:0022402;cell cycle process;1.11889827160741e-09!GO:0006399;tRNA metabolic process;1.34651281828647e-09!GO:0003676;nucleic acid binding;1.38769436581972e-09!GO:0016491;oxidoreductase activity;1.48826904194996e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.51453993276939e-09!GO:0032559;adenyl ribonucleotide binding;1.76514674202096e-09!GO:0030554;adenyl nucleotide binding;2.05174969456029e-09!GO:0009141;nucleoside triphosphate metabolic process;2.46105323329496e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.1643247374415e-09!GO:0009144;purine nucleoside triphosphate metabolic process;3.1643247374415e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.32914952601645e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.32914952601645e-09!GO:0006413;translational initiation;3.77389903901878e-09!GO:0030120;vesicle coat;4.20355499083775e-09!GO:0030662;coated vesicle membrane;4.20355499083775e-09!GO:0000278;mitotic cell cycle;5.99267300419768e-09!GO:0008639;small protein conjugating enzyme activity;6.1880660815247e-09!GO:0051188;cofactor biosynthetic process;6.21753089199132e-09!GO:0043687;post-translational protein modification;6.28697814468848e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.81932478391881e-09!GO:0048519;negative regulation of biological process;7.41570072625967e-09!GO:0005788;endoplasmic reticulum lumen;8.96582230871467e-09!GO:0009056;catabolic process;1.1543156853851e-08!GO:0048475;coated membrane;1.15501604431905e-08!GO:0030117;membrane coat;1.15501604431905e-08!GO:0017038;protein import;1.16299999722404e-08!GO:0004842;ubiquitin-protein ligase activity;1.26590914236967e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.26590914236967e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.26590914236967e-08!GO:0003924;GTPase activity;1.30555234388874e-08!GO:0005768;endosome;1.39629303695434e-08!GO:0006446;regulation of translational initiation;1.40966050775171e-08!GO:0051246;regulation of protein metabolic process;1.43262208419258e-08!GO:0015986;ATP synthesis coupled proton transport;1.43262208419258e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.43262208419258e-08!GO:0016604;nuclear body;1.48425944797206e-08!GO:0019787;small conjugating protein ligase activity;1.77542146731794e-08!GO:0005635;nuclear envelope;1.92981989049485e-08!GO:0043067;regulation of programmed cell death;1.93399827590261e-08!GO:0006364;rRNA processing;2.12129180200656e-08!GO:0042981;regulation of apoptosis;2.31541748446445e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.55121125989479e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.55121125989479e-08!GO:0009060;aerobic respiration;2.55951564823519e-08!GO:0008565;protein transporter activity;2.63007329003615e-08!GO:0044453;nuclear membrane part;2.63131261397637e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.7711352631913e-08!GO:0046034;ATP metabolic process;3.32091906118796e-08!GO:0016072;rRNA metabolic process;3.41055306469276e-08!GO:0016881;acid-amino acid ligase activity;3.53528154142788e-08!GO:0006461;protein complex assembly;3.98781665686171e-08!GO:0031965;nuclear membrane;4.04883817060052e-08!GO:0042623;ATPase activity, coupled;4.04988813006041e-08!GO:0044431;Golgi apparatus part;4.09105668900184e-08!GO:0016887;ATPase activity;4.13393621120976e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;4.13393621120976e-08!GO:0009117;nucleotide metabolic process;4.83445589838469e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.05013866175532e-08!GO:0004812;aminoacyl-tRNA ligase activity;6.05013866175532e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.05013866175532e-08!GO:0043069;negative regulation of programmed cell death;9.13375043291673e-08!GO:0016070;RNA metabolic process;1.132648545223e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.17111195329334e-07!GO:0045333;cellular respiration;1.18799137525997e-07!GO:0019829;cation-transporting ATPase activity;1.21990130359892e-07!GO:0043038;amino acid activation;1.29214086921647e-07!GO:0006418;tRNA aminoacylation for protein translation;1.29214086921647e-07!GO:0043039;tRNA aminoacylation;1.29214086921647e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.38458102446287e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.38832229482584e-07!GO:0065002;intracellular protein transport across a membrane;1.51212850626635e-07!GO:0006323;DNA packaging;1.53774657083719e-07!GO:0006974;response to DNA damage stimulus;1.629672025623e-07!GO:0043066;negative regulation of apoptosis;1.7908327922644e-07!GO:0031988;membrane-bound vesicle;2.06491462356737e-07!GO:0006916;anti-apoptosis;2.16389231194782e-07!GO:0006754;ATP biosynthetic process;2.47379074024507e-07!GO:0006753;nucleoside phosphate metabolic process;2.47379074024507e-07!GO:0065004;protein-DNA complex assembly;3.21462265681098e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.21462265681098e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.41100197273882e-07!GO:0051726;regulation of cell cycle;3.54705353966056e-07!GO:0007005;mitochondrion organization and biogenesis;3.84468614232076e-07!GO:0051276;chromosome organization and biogenesis;3.91206824895515e-07!GO:0000074;regulation of progression through cell cycle;5.11370493174254e-07!GO:0030532;small nuclear ribonucleoprotein complex;6.30565716389316e-07!GO:0005643;nuclear pore;6.30565716389316e-07!GO:0009108;coenzyme biosynthetic process;7.33617680626734e-07!GO:0005773;vacuole;7.40482944489075e-07!GO:0006099;tricarboxylic acid cycle;8.73830777823837e-07!GO:0046356;acetyl-CoA catabolic process;8.73830777823837e-07!GO:0051187;cofactor catabolic process;1.11189389524263e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.1335701940507e-06!GO:0006366;transcription from RNA polymerase II promoter;1.20337708399722e-06!GO:0008026;ATP-dependent helicase activity;1.42056299463493e-06!GO:0044440;endosomal part;1.52917821339855e-06!GO:0010008;endosome membrane;1.52917821339855e-06!GO:0006084;acetyl-CoA metabolic process;1.9615435719534e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.97786380217023e-06!GO:0016607;nuclear speck;1.99452803051429e-06!GO:0016787;hydrolase activity;2.22322122706891e-06!GO:0016740;transferase activity;2.35125672592775e-06!GO:0006333;chromatin assembly or disassembly;2.36250154753392e-06!GO:0045259;proton-transporting ATP synthase complex;2.4564605370099e-06!GO:0031410;cytoplasmic vesicle;2.53147359929237e-06!GO:0031982;vesicle;2.6697801476138e-06!GO:0005798;Golgi-associated vesicle;2.74975699310247e-06!GO:0031252;leading edge;3.09763350138243e-06!GO:0005905;coated pit;3.4498678299009e-06!GO:0009109;coenzyme catabolic process;3.47380500018382e-06!GO:0006281;DNA repair;3.80475514724845e-06!GO:0030036;actin cytoskeleton organization and biogenesis;3.84596545544388e-06!GO:0006091;generation of precursor metabolites and energy;4.07226425699826e-06!GO:0003714;transcription corepressor activity;5.24107647420417e-06!GO:0046930;pore complex;5.37360712822595e-06!GO:0006334;nucleosome assembly;5.38962632252603e-06!GO:0000139;Golgi membrane;5.92454051191614e-06!GO:0016779;nucleotidyltransferase activity;5.99161837607257e-06!GO:0006260;DNA replication;7.39060593890087e-06!GO:0016853;isomerase activity;7.48493714445663e-06!GO:0006752;group transfer coenzyme metabolic process;7.52327416348397e-06!GO:0000323;lytic vacuole;7.68575822747928e-06!GO:0005764;lysosome;7.68575822747928e-06!GO:0005525;GTP binding;7.89705123700819e-06!GO:0051170;nuclear import;8.17992403599346e-06!GO:0000087;M phase of mitotic cell cycle;8.37904103717141e-06!GO:0005770;late endosome;8.7145411020645e-06!GO:0007067;mitosis;8.7145411020645e-06!GO:0004386;helicase activity;9.13587667599234e-06!GO:0045454;cell redox homeostasis;9.38544189729346e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.87941411492433e-06!GO:0004298;threonine endopeptidase activity;1.05038467993634e-05!GO:0009719;response to endogenous stimulus;1.13462402244518e-05!GO:0048522;positive regulation of cellular process;1.17201067802965e-05!GO:0031497;chromatin assembly;1.2563367727972e-05!GO:0006606;protein import into nucleus;1.36704007219105e-05!GO:0031968;organelle outer membrane;1.44940296055704e-05!GO:0019867;outer membrane;1.58841303622481e-05!GO:0006403;RNA localization;2.22985189227583e-05!GO:0050657;nucleic acid transport;2.29554835958354e-05!GO:0051236;establishment of RNA localization;2.29554835958354e-05!GO:0050658;RNA transport;2.29554835958354e-05!GO:0005694;chromosome;2.63989951442003e-05!GO:0016564;transcription repressor activity;2.64770690450265e-05!GO:0003697;single-stranded DNA binding;2.87135952389219e-05!GO:0006793;phosphorus metabolic process;3.09756943074522e-05!GO:0006796;phosphate metabolic process;3.09756943074522e-05!GO:0005762;mitochondrial large ribosomal subunit;3.23092066519108e-05!GO:0000315;organellar large ribosomal subunit;3.23092066519108e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.37195844374496e-05!GO:0016567;protein ubiquitination;3.39810392902737e-05!GO:0005769;early endosome;3.54959527979084e-05!GO:0032446;protein modification by small protein conjugation;3.6634537103014e-05!GO:0000151;ubiquitin ligase complex;3.91650275458938e-05!GO:0000245;spliceosome assembly;3.99979928256298e-05!GO:0030867;rough endoplasmic reticulum membrane;4.46607365705886e-05!GO:0022403;cell cycle phase;4.5074689259874e-05!GO:0030029;actin filament-based process;4.70734102411151e-05!GO:0005741;mitochondrial outer membrane;4.72396453806298e-05!GO:0032561;guanyl ribonucleotide binding;4.9139410444278e-05!GO:0019001;guanyl nucleotide binding;4.9139410444278e-05!GO:0009165;nucleotide biosynthetic process;4.93386708954369e-05!GO:0005667;transcription factor complex;5.02697847114658e-05!GO:0031324;negative regulation of cellular metabolic process;5.33728295482181e-05!GO:0033116;ER-Golgi intermediate compartment membrane;5.64798696513372e-05!GO:0050794;regulation of cellular process;5.97635748862826e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.97985304580728e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.20186368804236e-05!GO:0003899;DNA-directed RNA polymerase activity;6.30953839966499e-05!GO:0003724;RNA helicase activity;6.34710231647751e-05!GO:0016044;membrane organization and biogenesis;6.42647072413126e-05!GO:0044427;chromosomal part;6.72102588529872e-05!GO:0008654;phospholipid biosynthetic process;7.02577127493214e-05!GO:0016563;transcription activator activity;7.39175805784959e-05!GO:0015980;energy derivation by oxidation of organic compounds;8.02535402815377e-05!GO:0003713;transcription coactivator activity;8.46839768699997e-05!GO:0000785;chromatin;8.89773326941564e-05!GO:0016310;phosphorylation;9.49989965817292e-05!GO:0045786;negative regulation of progression through cell cycle;0.00011638492030934!GO:0008361;regulation of cell size;0.000116403096465304!GO:0006613;cotranslational protein targeting to membrane;0.000116403096465304!GO:0016049;cell growth;0.000124202600422052!GO:0015630;microtubule cytoskeleton;0.000131119590457347!GO:0001558;regulation of cell growth;0.000131331537674832!GO:0005048;signal sequence binding;0.000134250195544236!GO:0008092;cytoskeletal protein binding;0.000139786839975139!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0001537237250547!GO:0044262;cellular carbohydrate metabolic process;0.000155210986588847!GO:0016568;chromatin modification;0.00015966969058125!GO:0043566;structure-specific DNA binding;0.000164325793998144!GO:0051301;cell division;0.000177870327680735!GO:0043623;cellular protein complex assembly;0.000196711175473385!GO:0030133;transport vesicle;0.000211832477297708!GO:0007010;cytoskeleton organization and biogenesis;0.000211832477297708!GO:0016859;cis-trans isomerase activity;0.00021188839863292!GO:0007243;protein kinase cascade;0.000220141481417256!GO:0009892;negative regulation of metabolic process;0.000227036637575582!GO:0051789;response to protein stimulus;0.000232535142378758!GO:0006986;response to unfolded protein;0.000232535142378758!GO:0006414;translational elongation;0.000249900828102843!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000267963219712789!GO:0051427;hormone receptor binding;0.00030488150648324!GO:0030176;integral to endoplasmic reticulum membrane;0.000330116497260047!GO:0006626;protein targeting to mitochondrion;0.000369307327417222!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000370965358562384!GO:0051028;mRNA transport;0.000385916647702974!GO:0005885;Arp2/3 protein complex;0.000402934398315541!GO:0043284;biopolymer biosynthetic process;0.000459335932683588!GO:0030663;COPI coated vesicle membrane;0.000486755436446392!GO:0030126;COPI vesicle coat;0.000486755436446392!GO:0030659;cytoplasmic vesicle membrane;0.000509820139329035!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000520941561414321!GO:0030118;clathrin coat;0.000559931733481469!GO:0035257;nuclear hormone receptor binding;0.000609247146212903!GO:0030658;transport vesicle membrane;0.000609255883209403!GO:0008250;oligosaccharyl transferase complex;0.000627098956574898!GO:0006612;protein targeting to membrane;0.000647709934958191!GO:0046474;glycerophospholipid biosynthetic process;0.000654794364805075!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000673303833732415!GO:0006839;mitochondrial transport;0.000685914879818308!GO:0043681;protein import into mitochondrion;0.000692158696987212!GO:0043021;ribonucleoprotein binding;0.000717713248722246!GO:0000314;organellar small ribosomal subunit;0.000719508337388494!GO:0005763;mitochondrial small ribosomal subunit;0.000719508337388494!GO:0030137;COPI-coated vesicle;0.000771876619716881!GO:0008186;RNA-dependent ATPase activity;0.00086307893453865!GO:0030132;clathrin coat of coated pit;0.000864715175406372!GO:0044433;cytoplasmic vesicle part;0.000897609281521123!GO:0008632;apoptotic program;0.000932012451997045!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000952122981049981!GO:0051920;peroxiredoxin activity;0.00101970073629276!GO:0019843;rRNA binding;0.00103339717060614!GO:0048518;positive regulation of biological process;0.00107894571265679!GO:0007264;small GTPase mediated signal transduction;0.00120542282180985!GO:0051329;interphase of mitotic cell cycle;0.00124154491850616!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00125098297266398!GO:0030880;RNA polymerase complex;0.00125682418654739!GO:0005791;rough endoplasmic reticulum;0.0012773991087679!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00133424516106396!GO:0007006;mitochondrial membrane organization and biogenesis;0.00137476689698693!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00139170666140511!GO:0019899;enzyme binding;0.0014482054908496!GO:0051168;nuclear export;0.00149533163267971!GO:0018196;peptidyl-asparagine modification;0.00153271656848659!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00153271656848659!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00154134596013348!GO:0065009;regulation of a molecular function;0.0015462663702829!GO:0006082;organic acid metabolic process;0.00172481186892792!GO:0004576;oligosaccharyl transferase activity;0.0017817330673345!GO:0008033;tRNA processing;0.0018770565607296!GO:0019752;carboxylic acid metabolic process;0.00192950330252916!GO:0008047;enzyme activator activity;0.00193495536038814!GO:0004004;ATP-dependent RNA helicase activity;0.00198375941852395!GO:0048487;beta-tubulin binding;0.00201182836595131!GO:0044452;nucleolar part;0.00201182836595131!GO:0030660;Golgi-associated vesicle membrane;0.00208960385674996!GO:0000279;M phase;0.00218825775614913!GO:0030134;ER to Golgi transport vesicle;0.00223079373382976!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00223079373382976!GO:0015399;primary active transmembrane transporter activity;0.00223079373382976!GO:0005774;vacuolar membrane;0.00245846596925516!GO:0046483;heterocycle metabolic process;0.00246458551902998!GO:0006891;intra-Golgi vesicle-mediated transport;0.00247180986957794!GO:0005813;centrosome;0.00249685580262646!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00253696649730044!GO:0051325;interphase;0.00256853449626532!GO:0006979;response to oxidative stress;0.00284673642684352!GO:0012506;vesicle membrane;0.00300393953969456!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00300393953969456!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00300393953969456!GO:0000428;DNA-directed RNA polymerase complex;0.00300393953969456!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.003024100128511!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.003024100128511!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00307158866228279!GO:0031072;heat shock protein binding;0.00307261233432881!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00307404176869069!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00307404176869069!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00307404176869069!GO:0000786;nucleosome;0.00307404176869069!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00313956990785197!GO:0040008;regulation of growth;0.00320878408466957!GO:0015992;proton transport;0.00331003246479021!GO:0030027;lamellipodium;0.00338351786596705!GO:0008610;lipid biosynthetic process;0.00344283210718157!GO:0048468;cell development;0.00345318167999448!GO:0017166;vinculin binding;0.00355730852748099!GO:0050789;regulation of biological process;0.00360249153885904!GO:0046489;phosphoinositide biosynthetic process;0.0036308946477906!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00364722755928424!GO:0030125;clathrin vesicle coat;0.00379626513838451!GO:0030665;clathrin coated vesicle membrane;0.00379626513838451!GO:0006818;hydrogen transport;0.00386179673259173!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00392571611601127!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00395362877564969!GO:0006509;membrane protein ectodomain proteolysis;0.00418858218809993!GO:0033619;membrane protein proteolysis;0.00418858218809993!GO:0006778;porphyrin metabolic process;0.00423891250412521!GO:0033013;tetrapyrrole metabolic process;0.00423891250412521!GO:0048471;perinuclear region of cytoplasm;0.00434730620566847!GO:0016126;sterol biosynthetic process;0.00442455870870277!GO:0030127;COPII vesicle coat;0.00446031940885963!GO:0012507;ER to Golgi transport vesicle membrane;0.00446031940885963!GO:0045941;positive regulation of transcription;0.00450861687666862!GO:0005815;microtubule organizing center;0.00464262111152899!GO:0046519;sphingoid metabolic process;0.00473660767601626!GO:0045792;negative regulation of cell size;0.00475213736241907!GO:0015631;tubulin binding;0.00476082382528679!GO:0016481;negative regulation of transcription;0.00479362743592331!GO:0042168;heme metabolic process;0.00479762726441275!GO:0001726;ruffle;0.00484439933994479!GO:0006950;response to stress;0.00489113966976604!GO:0045893;positive regulation of transcription, DNA-dependent;0.00491689249489955!GO:0005819;spindle;0.00500922262049421!GO:0016363;nuclear matrix;0.0050395502276647!GO:0046467;membrane lipid biosynthetic process;0.0051210893792037!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00521644282545877!GO:0031902;late endosome membrane;0.00528443431127703!GO:0030308;negative regulation of cell growth;0.00532974824996331!GO:0008243;plasminogen activator activity;0.00541082406338474!GO:0050662;coenzyme binding;0.00551290381371098!GO:0030119;AP-type membrane coat adaptor complex;0.00585744845341423!GO:0009967;positive regulation of signal transduction;0.00602995131226442!GO:0007033;vacuole organization and biogenesis;0.00625452454577699!GO:0006595;polyamine metabolic process;0.00627606522603364!GO:0044437;vacuolar part;0.00659595391252234!GO:0006383;transcription from RNA polymerase III promoter;0.00661691111974089!GO:0045045;secretory pathway;0.00679737895879593!GO:0042802;identical protein binding;0.00682066387068903!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00706295097583094!GO:0006650;glycerophospholipid metabolic process;0.00706295097583094!GO:0051087;chaperone binding;0.00711293244365355!GO:0006007;glucose catabolic process;0.00715257766327167!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00734437344084055!GO:0005765;lysosomal membrane;0.00734437344084055!GO:0000059;protein import into nucleus, docking;0.00740951579161896!GO:0007040;lysosome organization and biogenesis;0.00753354502769236!GO:0006417;regulation of translation;0.00755084600328985!GO:0003746;translation elongation factor activity;0.00755898239489806!GO:0005684;U2-dependent spliceosome;0.0076361656735489!GO:0051252;regulation of RNA metabolic process;0.00777741612065715!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00794004964923664!GO:0008139;nuclear localization sequence binding;0.00811370546049658!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00850484067916813!GO:0030131;clathrin adaptor complex;0.00853260141995204!GO:0043488;regulation of mRNA stability;0.00853721174510223!GO:0043487;regulation of RNA stability;0.00853721174510223!GO:0004177;aminopeptidase activity;0.00854573547433289!GO:0006897;endocytosis;0.00869086595250909!GO:0010324;membrane invagination;0.00869086595250909!GO:0003729;mRNA binding;0.00884552601346581!GO:0006740;NADPH regeneration;0.00885237339134356!GO:0006098;pentose-phosphate shunt;0.00885237339134356!GO:0005862;muscle thin filament tropomyosin;0.00893096223889286!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00910722442119101!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00910722442119101!GO:0051540;metal cluster binding;0.00937427156283254!GO:0051536;iron-sulfur cluster binding;0.00937427156283254!GO:0006672;ceramide metabolic process;0.00971435368293219!GO:0016197;endosome transport;0.00978153427940754!GO:0003711;transcription elongation regulator activity;0.00979082107773257!GO:0000049;tRNA binding;0.0102966660575595!GO:0048500;signal recognition particle;0.0105423519151914!GO:0006118;electron transport;0.0108247061625358!GO:0016860;intramolecular oxidoreductase activity;0.0109206027336687!GO:0005096;GTPase activator activity;0.0110326593409893!GO:0022890;inorganic cation transmembrane transporter activity;0.0113744921485957!GO:0008180;signalosome;0.011691204276684!GO:0030041;actin filament polymerization;0.011979748487042!GO:0006807;nitrogen compound metabolic process;0.0122296368866872!GO:0043492;ATPase activity, coupled to movement of substances;0.0122727072360019!GO:0006520;amino acid metabolic process;0.0122821770156708!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0131598585145498!GO:0015002;heme-copper terminal oxidase activity;0.0131598585145498!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0131598585145498!GO:0004129;cytochrome-c oxidase activity;0.0131598585145498!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0133277638344609!GO:0006289;nucleotide-excision repair;0.0136502195882379!GO:0006402;mRNA catabolic process;0.0138609681049138!GO:0003756;protein disulfide isomerase activity;0.0138609681049138!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0138609681049138!GO:0006779;porphyrin biosynthetic process;0.0139596169134419!GO:0033014;tetrapyrrole biosynthetic process;0.0139596169134419!GO:0005832;chaperonin-containing T-complex;0.0140770247522028!GO:0051539;4 iron, 4 sulfur cluster binding;0.0143513279461571!GO:0005869;dynactin complex;0.0143544339086812!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0144525987358006!GO:0009889;regulation of biosynthetic process;0.0146266959426675!GO:0043433;negative regulation of transcription factor activity;0.0146590210703588!GO:0030521;androgen receptor signaling pathway;0.0149525053045561!GO:0003684;damaged DNA binding;0.0150153456489553!GO:0031418;L-ascorbic acid binding;0.0150827852998119!GO:0006497;protein amino acid lipidation;0.0152847479116591!GO:0008154;actin polymerization and/or depolymerization;0.0154678039544449!GO:0006401;RNA catabolic process;0.0154900920690944!GO:0006783;heme biosynthetic process;0.0156868805164983!GO:0035035;histone acetyltransferase binding;0.0167497694686964!GO:0031529;ruffle organization and biogenesis;0.0173953336011425!GO:0035258;steroid hormone receptor binding;0.0178129040343901!GO:0006405;RNA export from nucleus;0.0179484051364153!GO:0033673;negative regulation of kinase activity;0.0179588108168464!GO:0006469;negative regulation of protein kinase activity;0.0179588108168464!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0179856421868985!GO:0007050;cell cycle arrest;0.0188330791085163!GO:0031326;regulation of cellular biosynthetic process;0.0191878888305852!GO:0019206;nucleoside kinase activity;0.0195456740797968!GO:0043022;ribosome binding;0.0196135365814911!GO:0031301;integral to organelle membrane;0.020194881954265!GO:0031543;peptidyl-proline dioxygenase activity;0.0209689126917424!GO:0000082;G1/S transition of mitotic cell cycle;0.0215949194933879!GO:0016272;prefoldin complex;0.0219156159912811!GO:0051348;negative regulation of transferase activity;0.0219156159912811!GO:0003779;actin binding;0.0229334747865311!GO:0007021;tubulin folding;0.0233623475642839!GO:0008312;7S RNA binding;0.0233675647648765!GO:0051287;NAD binding;0.0236053122593784!GO:0045926;negative regulation of growth;0.0237336453730542!GO:0008538;proteasome activator activity;0.0238808191235802!GO:0009303;rRNA transcription;0.024493085004487!GO:0006695;cholesterol biosynthetic process;0.0247690464392191!GO:0019798;procollagen-proline dioxygenase activity;0.0248731345553149!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0249172370862727!GO:0045047;protein targeting to ER;0.0249172370862727!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.025229647093587!GO:0051098;regulation of binding;0.0259066393517336!GO:0000209;protein polyubiquitination;0.0260894120465807!GO:0006354;RNA elongation;0.0266033543857248!GO:0009308;amine metabolic process;0.0268797670347601!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0270155313145474!GO:0006693;prostaglandin metabolic process;0.0278977618542151!GO:0006692;prostanoid metabolic process;0.0278977618542151!GO:0005874;microtubule;0.0279127829802814!GO:0048037;cofactor binding;0.0279658930572285!GO:0009112;nucleobase metabolic process;0.0279658930572285!GO:0043065;positive regulation of apoptosis;0.0280243492597284!GO:0022408;negative regulation of cell-cell adhesion;0.0281029050649737!GO:0006458;'de novo' protein folding;0.028285194013639!GO:0051084;'de novo' posttranslational protein folding;0.028285194013639!GO:0006611;protein export from nucleus;0.0283243255426136!GO:0006790;sulfur metabolic process;0.0285817921199441!GO:0031272;regulation of pseudopodium formation;0.0292448792394002!GO:0031269;pseudopodium formation;0.0292448792394002!GO:0031344;regulation of cell projection organization and biogenesis;0.0292448792394002!GO:0031268;pseudopodium organization and biogenesis;0.0292448792394002!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0292448792394002!GO:0031274;positive regulation of pseudopodium formation;0.0292448792394002!GO:0005100;Rho GTPase activator activity;0.0294010258885044!GO:0016408;C-acyltransferase activity;0.0301682338817861!GO:0050811;GABA receptor binding;0.0302398124940387!GO:0000096;sulfur amino acid metabolic process;0.0303787075353291!GO:0043068;positive regulation of programmed cell death;0.0303787075353291!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0311248793728928!GO:0050790;regulation of catalytic activity;0.031313167837965!GO:0051101;regulation of DNA binding;0.0314525680600714!GO:0030031;cell projection biogenesis;0.0315265393735611!GO:0007034;vacuolar transport;0.0315821005409902!GO:0030433;ER-associated protein catabolic process;0.0317430552743801!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0317430552743801!GO:0030149;sphingolipid catabolic process;0.0320221788376311!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0320671812354512!GO:0048144;fibroblast proliferation;0.0330356994288694!GO:0048145;regulation of fibroblast proliferation;0.0330356994288694!GO:0001953;negative regulation of cell-matrix adhesion;0.0330786135615084!GO:0051128;regulation of cellular component organization and biogenesis;0.0335526455250861!GO:0007030;Golgi organization and biogenesis;0.0336161250966213!GO:0005092;GDP-dissociation inhibitor activity;0.0346035581588603!GO:0006220;pyrimidine nucleotide metabolic process;0.0346554117766611!GO:0006352;transcription initiation;0.0347700876872378!GO:0000030;mannosyltransferase activity;0.0347700876872378!GO:0008637;apoptotic mitochondrial changes;0.0356869262457711!GO:0031901;early endosome membrane;0.035700043681589!GO:0006506;GPI anchor biosynthetic process;0.0358891029960302!GO:0045334;clathrin-coated endocytic vesicle;0.0362427697996609!GO:0022415;viral reproductive process;0.0365180164589027!GO:0032940;secretion by cell;0.0365995840296166!GO:0007265;Ras protein signal transduction;0.037084227586888!GO:0030145;manganese ion binding;0.0375919825441049!GO:0003678;DNA helicase activity;0.0381103284324689!GO:0045936;negative regulation of phosphate metabolic process;0.0382041213595448!GO:0030032;lamellipodium biogenesis;0.038393603013675!GO:0008147;structural constituent of bone;0.038774422940113!GO:0006376;mRNA splice site selection;0.0389078746785917!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0389078746785917!GO:0051270;regulation of cell motility;0.0389237702760774!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0393333403704332!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.039429936217815!GO:0030128;clathrin coat of endocytic vesicle;0.039429936217815!GO:0030669;clathrin-coated endocytic vesicle membrane;0.039429936217815!GO:0030122;AP-2 adaptor complex;0.039429936217815!GO:0005758;mitochondrial intermembrane space;0.039429936217815!GO:0042158;lipoprotein biosynthetic process;0.0398567611748773!GO:0019318;hexose metabolic process;0.0400351471230088!GO:0032507;maintenance of cellular protein localization;0.0410545981588271!GO:0006096;glycolysis;0.0410661452764013!GO:0006378;mRNA polyadenylation;0.0415398357892737!GO:0031124;mRNA 3'-end processing;0.0420734547904643!GO:0007051;spindle organization and biogenesis;0.0420734547904643!GO:0030911;TPR domain binding;0.0420968523584057!GO:0030384;phosphoinositide metabolic process;0.0420997417752836!GO:0006739;NADP metabolic process;0.0421901524872609!GO:0006635;fatty acid beta-oxidation;0.0426071637223665!GO:0043189;H4/H2A histone acetyltransferase complex;0.0430933407598987!GO:0030833;regulation of actin filament polymerization;0.0433002705517602!GO:0006261;DNA-dependent DNA replication;0.0439299596966087!GO:0004680;casein kinase activity;0.0444094787894708!GO:0031371;ubiquitin conjugating enzyme complex;0.0448633274122918!GO:0005996;monosaccharide metabolic process;0.0448633274122918!GO:0046365;monosaccharide catabolic process;0.0448633274122918!GO:0045892;negative regulation of transcription, DNA-dependent;0.045798180925667!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0460285633485538!GO:0030503;regulation of cell redox homeostasis;0.0460902853546472!GO:0046426;negative regulation of JAK-STAT cascade;0.0464173368943689!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0467154301643127!GO:0051272;positive regulation of cell motility;0.0470008773472498!GO:0040017;positive regulation of locomotion;0.0470008773472498!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0470515119667785!GO:0009116;nucleoside metabolic process;0.0472221590340463!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0476596398670987!GO:0006505;GPI anchor metabolic process;0.0478573456121674!GO:0000339;RNA cap binding;0.0480009564707495!GO:0031625;ubiquitin protein ligase binding;0.0481422678794864!GO:0006904;vesicle docking during exocytosis;0.0481882549977725!GO:0030100;regulation of endocytosis;0.0482981841816276!GO:0035267;NuA4 histone acetyltransferase complex;0.0483913406366609!GO:0030508;thiol-disulfide exchange intermediate activity;0.0483913406366609!GO:0051235;maintenance of localization;0.0487023295669535!GO:0033239;negative regulation of amine metabolic process;0.0487023295669535!GO:0045763;negative regulation of amino acid metabolic process;0.0487023295669535!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0487023295669535!GO:0006749;glutathione metabolic process;0.0490684396202841!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0494791411167494!GO:0022406;membrane docking;0.0494970708111931!GO:0048278;vesicle docking;0.0494970708111931 | |||
|sample_id=11286 | |sample_id=11286 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=coronary artery | |sample_tissue=coronary artery | ||
|top_motifs=GTF2A1,2:1.80389289945;EBF1:1.35266679083;HES1:1.33598480427;HOX{A5,B5}:1.25394854712;TLX1..3_NFIC{dimer}:1.23485925202;IKZF1:1.22815829015;CRX:1.19255830006;ZNF148:1.14289357611;PPARG:1.10880195216;SRF:1.06532785826;ZNF238:1.01771266429;NFE2L1:1.0149890277;GCM1,2:0.990196560564;TFCP2:0.982843169845;bHLH_family:0.966236692444;GLI1..3:0.930539690716;ZBTB6:0.839544393121;XCPE1{core}:0.811552962971;TBP:0.799619886644;MYBL2:0.789651872073;LHX3,4:0.776990099977;TEAD1:0.749404443544;HIF1A:0.725199113127;EN1,2:0.718044758108;TP53:0.71159587534;ONECUT1,2:0.693865686834;FOX{I1,J2}:0.683184814705;ZNF423:0.676316814588;FOXL1:0.670782888038;SMAD1..7,9:0.665692663364;NR3C1:0.665023638671;HMX1:0.662493201112;HSF1,2:0.65478217197;TAL1_TCF{3,4,12}:0.613250654332;TFAP4:0.596910426145;NFATC1..3:0.5912860283;TBX4,5:0.581539170069;HAND1,2:0.578348622834;GFI1B:0.568339200736;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.566079901326;NFE2L2:0.563308355279;NKX2-2,8:0.539558998566;ADNP_IRX_SIX_ZHX:0.525733361405;HIC1:0.506562089053;PAX8:0.477245481389;TFAP2B:0.47311271283;BACH2:0.46916193268;FOS_FOS{B,L1}_JUN{B,D}:0.464482280389;PBX1:0.424798628833;NHLH1,2:0.415982931557;KLF4:0.415524541992;HOX{A6,A7,B6,B7}:0.378044983057;STAT5{A,B}:0.369040606069;POU2F1..3:0.365697060703;HLF:0.36346263908;GTF2I:0.354471135882;ALX4:0.353227683307;REST:0.347794001641;FOSL2:0.345811414667;SOX{8,9,10}:0.3448821705;LEF1_TCF7_TCF7L1,2:0.342372999044;XBP1:0.33441075797;TFAP2{A,C}:0.325714852812;SOX17:0.324562283346;ZIC1..3:0.321817644901;POU3F1..4:0.276492097803;NR5A1,2:0.275647836858;GZF1:0.274073036931;ELK1,4_GABP{A,B1}:0.260241208053;NKX3-2:0.24951733155;NFIX:0.241775137888;POU1F1:0.235027247156;JUN:0.229818024049;MAFB:0.215421857547;SPZ1:0.214441765258;ZNF384:0.195166145458;ATF6:0.184452981828;MTF1:0.177744115387;NFE2:0.172483928152;SP1:0.170246352605;CEBPA,B_DDIT3:0.164735903556;HNF1A:0.163939348169;PAX5:0.161900793527;HBP1_HMGB_SSRP1_UBTF:0.157148853559;AR:0.146398611897;ESRRA:0.134991994186;CDC5L:0.132628802151;GATA6:0.131162886623;FOXQ1:0.127704347978;MZF1:0.119449440641;TLX2:0.0845418879426;MEF2{A,B,C,D}:0.0606931397381;PRRX1,2:0.0509369953436;PAX1,9:0.0214603315937;NANOG:0.00810515672433;RXRA_VDR{dimer}:0.000424609325412;ETS1,2:-0.00421269421151;PATZ1:-0.00630635695353;VSX1,2:-0.010738747491;DBP:-0.0382390334368;MTE{core}:-0.0436571159531;RXR{A,B,G}:-0.050999670895;MYFfamily:-0.0576791864109;NFKB1_REL_RELA:-0.069179494039;GATA4:-0.0794849086075;HMGA1,2:-0.0798406713757;NFIL3:-0.0809585538774;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0988148024733;HOX{A4,D4}:-0.107873480749;PAX2:-0.11128735843;SOX2:-0.114153426221;EP300:-0.119665551371;EVI1:-0.12615648678;RREB1:-0.132094903122;RUNX1..3:-0.144132334824;ESR1:-0.155188141934;UFEwm:-0.157097500485;POU6F1:-0.176029021274;PRDM1:-0.177664971634;RFX1:-0.181328543821;ELF1,2,4:-0.205594964785;POU5F1:-0.206706226374;STAT2,4,6:-0.207518632291;MAZ:-0.207812469169;MED-1{core}:-0.213621356347;FOXM1:-0.217223507733;ZNF143:-0.236159316593;EGR1..3:-0.240326338415;ARID5B:-0.254069833094;YY1:-0.273904476771;HNF4A_NR2F1,2:-0.274021157453;LMO2:-0.295034270547;TFDP1:-0.317221477967;HOXA9_MEIS1:-0.339351591347;SPIB:-0.340053051062;NANOG{mouse}:-0.342523145441;MYOD1:-0.366439629439;SPI1:-0.366441738426;TGIF1:-0.373143031276;PAX6:-0.376023576274;MYB:-0.378708019066;AIRE:-0.380495340574;GFI1:-0.386966642804;NKX2-3_NKX2-5:-0.389997831399;NRF1:-0.419480055255;ZFP161:-0.44687577285;NR6A1:-0.477527085488;FOXD3:-0.483756739424;ALX1:-0.484829784711;NKX3-1:-0.516638500543;SNAI1..3:-0.529899840483;TOPORS:-0.532415220351;OCT4_SOX2{dimer}:-0.535613470713;FOXA2:-0.538499942163;DMAP1_NCOR{1,2}_SMARC:-0.550639147213;AHR_ARNT_ARNT2:-0.57347505864;E2F1..5:-0.574521954307;NFY{A,B,C}:-0.583073108996;PAX3,7:-0.587128677531;PITX1..3:-0.606919936624;ATF2:-0.611683400381;IRF1,2:-0.614243646443;RORA:-0.621236268392;FOXO1,3,4:-0.627067461816;ZEB1:-0.63543813477;FOX{F1,F2,J1}:-0.636734455766;NR1H4:-0.640568914809;T:-0.667007399548;SOX5:-0.685069048249;FOX{D1,D2}:-0.733377898689;ATF5_CREB3:-0.738764022853;TEF:-0.755470075868;IRF7:-0.799381430589;CUX2:-0.894255122115;SREBF1,2:-0.928819888904;IKZF2:-0.937303287595;BREu{core}:-0.938760029083;NKX2-1,4:-0.979344716745;CREB1:-1.01607641453;RFX2..5_RFXANK_RFXAP:-1.02943490381;PAX4:-1.06340919209;FOXP1:-1.09255300232;ATF4:-1.10892225653;PDX1:-1.17726224531;NKX6-1,2:-1.18261547836;FOXP3:-1.19246167275;CDX1,2,4:-1.28095421021;STAT1,3:-1.29988434909;BPTF:-1.35075992515;RBPJ:-1.40466635517;FOXN1:-1.41191197633;ZBTB16:-1.51343772566 | |top_motifs=GTF2A1,2:1.80389289945;EBF1:1.35266679083;HES1:1.33598480427;HOX{A5,B5}:1.25394854712;TLX1..3_NFIC{dimer}:1.23485925202;IKZF1:1.22815829015;CRX:1.19255830006;ZNF148:1.14289357611;PPARG:1.10880195216;SRF:1.06532785826;ZNF238:1.01771266429;NFE2L1:1.0149890277;GCM1,2:0.990196560564;TFCP2:0.982843169845;bHLH_family:0.966236692444;GLI1..3:0.930539690716;ZBTB6:0.839544393121;XCPE1{core}:0.811552962971;TBP:0.799619886644;MYBL2:0.789651872073;LHX3,4:0.776990099977;TEAD1:0.749404443544;HIF1A:0.725199113127;EN1,2:0.718044758108;TP53:0.71159587534;ONECUT1,2:0.693865686834;FOX{I1,J2}:0.683184814705;ZNF423:0.676316814588;FOXL1:0.670782888038;SMAD1..7,9:0.665692663364;NR3C1:0.665023638671;HMX1:0.662493201112;HSF1,2:0.65478217197;TAL1_TCF{3,4,12}:0.613250654332;TFAP4:0.596910426145;NFATC1..3:0.5912860283;TBX4,5:0.581539170069;HAND1,2:0.578348622834;GFI1B:0.568339200736;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.566079901326;NFE2L2:0.563308355279;NKX2-2,8:0.539558998566;ADNP_IRX_SIX_ZHX:0.525733361405;HIC1:0.506562089053;PAX8:0.477245481389;TFAP2B:0.47311271283;BACH2:0.46916193268;FOS_FOS{B,L1}_JUN{B,D}:0.464482280389;PBX1:0.424798628833;NHLH1,2:0.415982931557;KLF4:0.415524541992;HOX{A6,A7,B6,B7}:0.378044983057;STAT5{A,B}:0.369040606069;POU2F1..3:0.365697060703;HLF:0.36346263908;GTF2I:0.354471135882;ALX4:0.353227683307;REST:0.347794001641;FOSL2:0.345811414667;SOX{8,9,10}:0.3448821705;LEF1_TCF7_TCF7L1,2:0.342372999044;XBP1:0.33441075797;TFAP2{A,C}:0.325714852812;SOX17:0.324562283346;ZIC1..3:0.321817644901;POU3F1..4:0.276492097803;NR5A1,2:0.275647836858;GZF1:0.274073036931;ELK1,4_GABP{A,B1}:0.260241208053;NKX3-2:0.24951733155;NFIX:0.241775137888;POU1F1:0.235027247156;JUN:0.229818024049;MAFB:0.215421857547;SPZ1:0.214441765258;ZNF384:0.195166145458;ATF6:0.184452981828;MTF1:0.177744115387;NFE2:0.172483928152;SP1:0.170246352605;CEBPA,B_DDIT3:0.164735903556;HNF1A:0.163939348169;PAX5:0.161900793527;HBP1_HMGB_SSRP1_UBTF:0.157148853559;AR:0.146398611897;ESRRA:0.134991994186;CDC5L:0.132628802151;GATA6:0.131162886623;FOXQ1:0.127704347978;MZF1:0.119449440641;TLX2:0.0845418879426;MEF2{A,B,C,D}:0.0606931397381;PRRX1,2:0.0509369953436;PAX1,9:0.0214603315937;NANOG:0.00810515672433;RXRA_VDR{dimer}:0.000424609325412;ETS1,2:-0.00421269421151;PATZ1:-0.00630635695353;VSX1,2:-0.010738747491;DBP:-0.0382390334368;MTE{core}:-0.0436571159531;RXR{A,B,G}:-0.050999670895;MYFfamily:-0.0576791864109;NFKB1_REL_RELA:-0.069179494039;GATA4:-0.0794849086075;HMGA1,2:-0.0798406713757;NFIL3:-0.0809585538774;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0988148024733;HOX{A4,D4}:-0.107873480749;PAX2:-0.11128735843;SOX2:-0.114153426221;EP300:-0.119665551371;EVI1:-0.12615648678;RREB1:-0.132094903122;RUNX1..3:-0.144132334824;ESR1:-0.155188141934;UFEwm:-0.157097500485;POU6F1:-0.176029021274;PRDM1:-0.177664971634;RFX1:-0.181328543821;ELF1,2,4:-0.205594964785;POU5F1:-0.206706226374;STAT2,4,6:-0.207518632291;MAZ:-0.207812469169;MED-1{core}:-0.213621356347;FOXM1:-0.217223507733;ZNF143:-0.236159316593;EGR1..3:-0.240326338415;ARID5B:-0.254069833094;YY1:-0.273904476771;HNF4A_NR2F1,2:-0.274021157453;LMO2:-0.295034270547;TFDP1:-0.317221477967;HOXA9_MEIS1:-0.339351591347;SPIB:-0.340053051062;NANOG{mouse}:-0.342523145441;MYOD1:-0.366439629439;SPI1:-0.366441738426;TGIF1:-0.373143031276;PAX6:-0.376023576274;MYB:-0.378708019066;AIRE:-0.380495340574;GFI1:-0.386966642804;NKX2-3_NKX2-5:-0.389997831399;NRF1:-0.419480055255;ZFP161:-0.44687577285;NR6A1:-0.477527085488;FOXD3:-0.483756739424;ALX1:-0.484829784711;NKX3-1:-0.516638500543;SNAI1..3:-0.529899840483;TOPORS:-0.532415220351;OCT4_SOX2{dimer}:-0.535613470713;FOXA2:-0.538499942163;DMAP1_NCOR{1,2}_SMARC:-0.550639147213;AHR_ARNT_ARNT2:-0.57347505864;E2F1..5:-0.574521954307;NFY{A,B,C}:-0.583073108996;PAX3,7:-0.587128677531;PITX1..3:-0.606919936624;ATF2:-0.611683400381;IRF1,2:-0.614243646443;RORA:-0.621236268392;FOXO1,3,4:-0.627067461816;ZEB1:-0.63543813477;FOX{F1,F2,J1}:-0.636734455766;NR1H4:-0.640568914809;T:-0.667007399548;SOX5:-0.685069048249;FOX{D1,D2}:-0.733377898689;ATF5_CREB3:-0.738764022853;TEF:-0.755470075868;IRF7:-0.799381430589;CUX2:-0.894255122115;SREBF1,2:-0.928819888904;IKZF2:-0.937303287595;BREu{core}:-0.938760029083;NKX2-1,4:-0.979344716745;CREB1:-1.01607641453;RFX2..5_RFXANK_RFXAP:-1.02943490381;PAX4:-1.06340919209;FOXP1:-1.09255300232;ATF4:-1.10892225653;PDX1:-1.17726224531;NKX6-1,2:-1.18261547836;FOXP3:-1.19246167275;CDX1,2,4:-1.28095421021;STAT1,3:-1.29988434909;BPTF:-1.35075992515;RBPJ:-1.40466635517;FOXN1:-1.41191197633;ZBTB16:-1.51343772566 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11286-116I8;search_select_hide=table117:FF:11286-116I8 | |||
}} | }} | ||
Latest revision as of 16:31, 3 June 2020
| Name: | Smooth Muscle Cells - Coronary Artery, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11088 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11088
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11088
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.905 |
| 10 | 10 | 0.144 |
| 100 | 100 | 0.9 |
| 101 | 101 | 0.637 |
| 102 | 102 | 0.95 |
| 103 | 103 | 0.524 |
| 104 | 104 | 0.339 |
| 105 | 105 | 0.378 |
| 106 | 106 | 0.0454 |
| 107 | 107 | 0.0273 |
| 108 | 108 | 0.608 |
| 109 | 109 | 0.0876 |
| 11 | 11 | 0.101 |
| 110 | 110 | 0.504 |
| 111 | 111 | 0.448 |
| 112 | 112 | 0.624 |
| 113 | 113 | 0.215 |
| 114 | 114 | 0.314 |
| 115 | 115 | 0.688 |
| 116 | 116 | 0.0643 |
| 117 | 117 | 0.799 |
| 118 | 118 | 0.697 |
| 119 | 119 | 0.34 |
| 12 | 12 | 0.697 |
| 120 | 120 | 0.203 |
| 121 | 121 | 0.421 |
| 122 | 122 | 0.428 |
| 123 | 123 | 0.0341 |
| 124 | 124 | 0.961 |
| 125 | 125 | 0.69 |
| 126 | 126 | 0.902 |
| 127 | 127 | 0.732 |
| 128 | 128 | 0.204 |
| 129 | 129 | 0.601 |
| 13 | 13 | 0.985 |
| 130 | 130 | 0.245 |
| 131 | 131 | 0.137 |
| 132 | 132 | 0.409 |
| 133 | 133 | 0.911 |
| 134 | 134 | 0.15 |
| 135 | 135 | 0.246 |
| 136 | 136 | 0.852 |
| 137 | 137 | 0.297 |
| 138 | 138 | 0.494 |
| 139 | 139 | 0.32 |
| 14 | 14 | 0.553 |
| 140 | 140 | 0.585 |
| 141 | 141 | 0.42 |
| 142 | 142 | 0.941 |
| 143 | 143 | 0.0365 |
| 144 | 144 | 0.999 |
| 145 | 145 | 0.17 |
| 146 | 146 | 0.363 |
| 147 | 147 | 0.192 |
| 148 | 148 | 0.914 |
| 149 | 149 | 0.153 |
| 15 | 15 | 0.684 |
| 150 | 150 | 0.128 |
| 151 | 151 | 0.482 |
| 152 | 152 | 0.00846 |
| 153 | 153 | 0.396 |
| 154 | 154 | 0.25 |
| 155 | 155 | 0.0162 |
| 156 | 156 | 0.96 |
| 157 | 157 | 0.833 |
| 158 | 158 | 0.0311 |
| 159 | 159 | 0.286 |
| 16 | 16 | 0.249 |
| 160 | 160 | 0.0936 |
| 161 | 161 | 0.567 |
| 162 | 162 | 0.755 |
| 163 | 163 | 0.941 |
| 164 | 164 | 0.856 |
| 165 | 165 | 0.559 |
| 166 | 166 | 0.753 |
| 167 | 167 | 0.466 |
| 168 | 168 | 0.478 |
| 169 | 169 | 0.0682 |
| 17 | 17 | 0.103 |
| 18 | 18 | 0.12 |
| 19 | 19 | 0.159 |
| 2 | 2 | 0.397 |
| 20 | 20 | 0.353 |
| 21 | 21 | 0.584 |
| 22 | 22 | 0.142 |
| 23 | 23 | 0.145 |
| 24 | 24 | 0.198 |
| 25 | 25 | 0.272 |
| 26 | 26 | 0.264 |
| 27 | 27 | 0.484 |
| 28 | 28 | 0.227 |
| 29 | 29 | 0.861 |
| 3 | 3 | 0.519 |
| 30 | 30 | 0.118 |
| 31 | 31 | 0.52 |
| 32 | 32 | 0.0451 |
| 33 | 33 | 0.846 |
| 34 | 34 | 0.201 |
| 35 | 35 | 0.924 |
| 36 | 36 | 0.781 |
| 37 | 37 | 0.154 |
| 38 | 38 | 0.541 |
| 39 | 39 | 0.255 |
| 4 | 4 | 0.744 |
| 40 | 40 | 0.159 |
| 41 | 41 | 0.795 |
| 42 | 42 | 0.649 |
| 43 | 43 | 0.387 |
| 44 | 44 | 0.829 |
| 45 | 45 | 0.172 |
| 46 | 46 | 0.257 |
| 47 | 47 | 0.406 |
| 48 | 48 | 0.18 |
| 49 | 49 | 0.683 |
| 5 | 5 | 0.766 |
| 50 | 50 | 0.395 |
| 51 | 51 | 0.773 |
| 52 | 52 | 0.554 |
| 53 | 53 | 0.609 |
| 54 | 54 | 0.502 |
| 55 | 55 | 0.259 |
| 56 | 56 | 0.511 |
| 57 | 57 | 0.588 |
| 58 | 58 | 0.548 |
| 59 | 59 | 0.0937 |
| 6 | 6 | 0.741 |
| 60 | 60 | 0.592 |
| 61 | 61 | 0.938 |
| 62 | 62 | 0.706 |
| 63 | 63 | 0.274 |
| 64 | 64 | 0.503 |
| 65 | 65 | 0.144 |
| 66 | 66 | 0.391 |
| 67 | 67 | 0.996 |
| 68 | 68 | 0.291 |
| 69 | 69 | 0.359 |
| 7 | 7 | 0.813 |
| 70 | 70 | 0.279 |
| 71 | 71 | 0.304 |
| 72 | 72 | 0.825 |
| 73 | 73 | 0.0037 |
| 74 | 74 | 0.699 |
| 75 | 75 | 0.563 |
| 76 | 76 | 0.346 |
| 77 | 77 | 0.00375 |
| 78 | 78 | 0.603 |
| 79 | 79 | 0.337 |
| 8 | 8 | 0.0866 |
| 80 | 80 | 0.303 |
| 81 | 81 | 0.806 |
| 82 | 82 | 0.639 |
| 83 | 83 | 0.988 |
| 84 | 84 | 0.97 |
| 85 | 85 | 0.149 |
| 86 | 86 | 0.879 |
| 87 | 87 | 0.0275 |
| 88 | 88 | 0.182 |
| 89 | 89 | 0.0659 |
| 9 | 9 | 0.149 |
| 90 | 90 | 0.136 |
| 91 | 91 | 0.46 |
| 92 | 92 | 0.569 |
| 93 | 93 | 0.903 |
| 94 | 94 | 0.769 |
| 95 | 95 | 0.111 |
| 96 | 96 | 0.898 |
| 97 | 97 | 0.25 |
| 98 | 98 | 0.856 |
| 99 | 99 | 0.00571 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11088
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000172 human smooth muscle cell of coronary artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000359 (vascular associated smooth muscle cell)
0002592 (smooth muscle cell of the coronary artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0004573 (systemic artery)
0003498 (heart blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0005985 (coronary vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001621 (coronary artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000172 (human smooth muscle cell of coronary artery sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
