FF:11282-116I4: Difference between revisions

Latest revision as of 16:30, 3 June 2020

Name:	Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11084
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skeletal muscle
dev stage	22 weeks old fetus
sex	unknown
age	embryo 22week
cell type	skeletal muscle cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1424
catalog number	CA150D-R10f
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004973

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11084		CAGE		DRX008461		DRR009333

Accession ID Hg19

Library id		BAM		CTSS
CNhs11084		DRZ000758		DRZ002143

Accession ID Hg38

Library id		BAM		CTSS
CNhs11084		DRZ012108		DRZ013493

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10050		download		download		download		download

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00004973

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10004.GTAGAG		sRNA-Seq		DRX037047		DRR041413

Accession ID Hg19

Library id		BAM		CTSS
SRhi10004.GTAGAG		DRZ007055

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.053
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0155
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0.52
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0712
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0.777
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.744
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.00813
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0902
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.196
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.132
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.52
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.183
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.192
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.037
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.676
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0385
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.00569
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.037
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.103
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.00667
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0304
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.0125
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.037
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.132
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.037
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.659
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.575
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.4
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.037
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.245
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0.037
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.737
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.458
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0.037
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11084

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.124
MA0003.1	MA0003.1	0.172
MA0004.1	MA0004.1	0.191
MA0006.1	MA0006.1	0.451
MA0007.1	MA0007.1	0.0467
MA0009.1	MA0009.1	0.0196
MA0014.1	MA0014.1	0.633
MA0017.1	MA0017.1	0.109
MA0018.2	MA0018.2	0.0383
MA0019.1	MA0019.1	0.0849
MA0024.1	MA0024.1	0.651
MA0025.1	MA0025.1	0.111
MA0027.1	MA0027.1	0.378
MA0028.1	MA0028.1	0.0315
MA0029.1	MA0029.1	0.413
MA0030.1	MA0030.1	0.137
MA0031.1	MA0031.1	0.018
MA0035.2	MA0035.2	0.0398
MA0038.1	MA0038.1	0.288
MA0039.2	MA0039.2	0.0762
MA0040.1	MA0040.1	0.667
MA0041.1	MA0041.1	0.534
MA0042.1	MA0042.1	0.587
MA0043.1	MA0043.1	0.0114
MA0046.1	MA0046.1	0.288
MA0047.2	MA0047.2	0.00638
MA0048.1	MA0048.1	0.00815
MA0050.1	MA0050.1	0.00113
MA0051.1	MA0051.1	0.0184
MA0052.1	MA0052.1	3.93849e-10
MA0055.1	MA0055.1	5.03024e-4
MA0057.1	MA0057.1	0.922
MA0058.1	MA0058.1	0.0942
MA0059.1	MA0059.1	0.576
MA0060.1	MA0060.1	0.854
MA0061.1	MA0061.1	4.76641e-4
MA0062.2	MA0062.2	6.44404e-8
MA0065.2	MA0065.2	0.317
MA0066.1	MA0066.1	0.489
MA0067.1	MA0067.1	0.012
MA0068.1	MA0068.1	0.0579
MA0069.1	MA0069.1	0.0587
MA0070.1	MA0070.1	0.0906
MA0071.1	MA0071.1	0.778
MA0072.1	MA0072.1	0.634
MA0073.1	MA0073.1	0.639
MA0074.1	MA0074.1	0.447
MA0076.1	MA0076.1	0.0372
MA0077.1	MA0077.1	0.378
MA0078.1	MA0078.1	0.701
MA0079.2	MA0079.2	0.925
MA0080.2	MA0080.2	7.13863e-13
MA0081.1	MA0081.1	0.00357
MA0083.1	MA0083.1	1.58161e-5
MA0084.1	MA0084.1	0.116
MA0087.1	MA0087.1	0.286
MA0088.1	MA0088.1	0.833
MA0090.1	MA0090.1	0.00193
MA0091.1	MA0091.1	1.85543e-11
MA0092.1	MA0092.1	0.706
MA0093.1	MA0093.1	0.235
MA0099.2	MA0099.2	1.88129e-4
MA0100.1	MA0100.1	0.578
MA0101.1	MA0101.1	7.2659e-5
MA0102.2	MA0102.2	0.00971
MA0103.1	MA0103.1	0.0118
MA0104.2	MA0104.2	0.165
MA0105.1	MA0105.1	0.00238
MA0106.1	MA0106.1	0.408
MA0107.1	MA0107.1	2.16562e-4
MA0108.2	MA0108.2	2.46192e-13
MA0111.1	MA0111.1	0.362
MA0112.2	MA0112.2	0.0329
MA0113.1	MA0113.1	0.224
MA0114.1	MA0114.1	0.26
MA0115.1	MA0115.1	0.302
MA0116.1	MA0116.1	0.00789
MA0117.1	MA0117.1	0.399
MA0119.1	MA0119.1	0.475
MA0122.1	MA0122.1	0.506
MA0124.1	MA0124.1	0.697
MA0125.1	MA0125.1	0.401
MA0131.1	MA0131.1	0.237
MA0135.1	MA0135.1	0.124
MA0136.1	MA0136.1	1.2546e-15
MA0137.2	MA0137.2	0.194
MA0138.2	MA0138.2	0.872
MA0139.1	MA0139.1	0.397
MA0140.1	MA0140.1	0.0629
MA0141.1	MA0141.1	0.626
MA0142.1	MA0142.1	0.138
MA0143.1	MA0143.1	0.618
MA0144.1	MA0144.1	0.11
MA0145.1	MA0145.1	0.0127
MA0146.1	MA0146.1	0.312
MA0147.1	MA0147.1	0.302
MA0148.1	MA0148.1	0.00483
MA0149.1	MA0149.1	0.0739
MA0150.1	MA0150.1	1.58935e-4
MA0152.1	MA0152.1	0.00585
MA0153.1	MA0153.1	0.531
MA0154.1	MA0154.1	0.389
MA0155.1	MA0155.1	0.0281
MA0156.1	MA0156.1	1.69171e-14
MA0157.1	MA0157.1	0.0271
MA0159.1	MA0159.1	0.672
MA0160.1	MA0160.1	0.0353
MA0162.1	MA0162.1	0.183
MA0163.1	MA0163.1	0.825
MA0164.1	MA0164.1	0.605
MA0258.1	MA0258.1	0.834
MA0259.1	MA0259.1	0.642

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11084

Novel motif	Logo	P-value
1	1	0.397
10	10	0.0288
100	100	0.946
101	101	0.651
102	102	0.616
103	103	0.195
104	104	0.374
105	105	0.819
106	106	0.232
107	107	0.252
108	108	0.437
109	109	0.32
11	11	0.794
110	110	0.705
111	111	0.669
112	112	0.225
113	113	6.19584e-5
114	114	0.576
115	115	0.982
116	116	0.234
117	117	0.154
118	118	0.0795
119	119	0.863
12	12	0.645
120	120	0.358
121	121	0.62
122	122	0.0483
123	123	1.31115e-4
124	124	0.108
125	125	0.321
126	126	0.558
127	127	0.422
128	128	0.496
129	129	0.691
13	13	0.93
130	130	0.327
131	131	0.0849
132	132	0.501
133	133	0.653
134	134	0.0643
135	135	0.963
136	136	0.0589
137	137	0.266
138	138	0.217
139	139	0.784
14	14	0.772
140	140	0.161
141	141	0.0951
142	142	0.987
143	143	0.194
144	144	0.427
145	145	0.57
146	146	0.867
147	147	0.0947
148	148	0.304
149	149	0.0417
15	15	0.11
150	150	0.902
151	151	0.837
152	152	0.218
153	153	0.365
154	154	0.484
155	155	0.00555
156	156	0.321
157	157	0.58
158	158	0.0777
159	159	0.876
16	16	0.316
160	160	0.735
161	161	0.779
162	162	0.0635
163	163	0.65
164	164	0.159
165	165	0.71
166	166	0.426
167	167	0.025
168	168	0.693
169	169	0.0248
17	17	0.971
18	18	0.932
19	19	0.0355
2	2	0.152
20	20	0.0831
21	21	0.341
22	22	0.204
23	23	0.892
24	24	0.571
25	25	0.532
26	26	0.297
27	27	0.567
28	28	0.27
29	29	0.157
3	3	0.355
30	30	0.248
31	31	0.888
32	32	1.08339e-9
33	33	0.259
34	34	0.58
35	35	0.478
36	36	0.151
37	37	0.932
38	38	0.447
39	39	0.227
4	4	0.72
40	40	0.0791
41	41	0.0729
42	42	0.401
43	43	0.558
44	44	0.818
45	45	0.577
46	46	0.991
47	47	0.546
48	48	0.746
49	49	0.393
5	5	0.832
50	50	0.439
51	51	0.829
52	52	0.881
53	53	0.656
54	54	0.801
55	55	0.857
56	56	0.876
57	57	0.605
58	58	0.168
59	59	0.597
6	6	0.833
60	60	0.513
61	61	0.47
62	62	0.555
63	63	0.9
64	64	0.508
65	65	0.818
66	66	0.585
67	67	0.823
68	68	0.799
69	69	0.904
7	7	0.742
70	70	0.351
71	71	0.118
72	72	0.197
73	73	0.594
74	74	0.417
75	75	0.251
76	76	0.0354
77	77	0.632
78	78	0.458
79	79	0.0113
8	8	0.937
80	80	0.647
81	81	0.379
82	82	0.875
83	83	0.272
84	84	0.592
85	85	0.947
86	86	0.697
87	87	0.222
88	88	0.713
89	89	0.194
9	9	0.198
90	90	0.323
91	91	0.895
92	92	0.891
93	93	0.659
94	94	0.522
95	95	0.0859
96	96	0.822
97	97	0.775
98	98	0.119
99	99	0.00294

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11084

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0104975 human myotube cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000162 (human skeletal muscle cell sample)
0104975 (human myotube cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|id=FF:11282-116I4
+|DRA_sample_Accession=CAGE@SAMD00004973
-|name=Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004973
-|sample_id=11282
+|HumanCAGEScanFiles=NCig10050;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.NCig10050.11282-116I4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.NCig10050.11282-116I4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.NCig10050.11282-116I4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.NCig10050.11282-116I4.hg19.GCTATA.pairs.bed.gz
-|rna_tube_id=116I4
+|accession_numbers=CAGE;DRX008461;DRR009333;DRZ000758;DRZ002143;DRZ012108;DRZ013493
-|rna_box=116
+|accession_numbers_RNASeq=sRNA-Seq;DRX037047;DRR041413;DRZ007055
-|rna_position=I4
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
-|sample_cell_lot=N/A
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188
-|sample_cell_catalog=N/A
-|sample_company=Cell Applications
-|rna_lot_number=1424.00000
-|rna_catalog_number=CA150D-R10f
-|sample_species=Human (Homo sapiens)
-|sample_strain=
-|sample_dev_stage=22 weeks old fetus
-|sample_tissue=skeletal muscle
-|sample_donor(cell lot)=
-|sample_sex=unknown
-|sample_age=embryo 22week
-|sample_ethnicity=U
-|rna_rin=
-|rna_od260/230=
-|rna_od260/280=
-|sample_cell_type=skeletal muscle cell
-|sample_cell_line=
-|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
-|sample_experimental_condition=
-|sample_disease=
-|rna_sample_type=total RNA
-|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
-|rna_weight_ug=10.00000
-|rna_concentration=1.00000
-|sample_note=
-|profile_hcage=CNhs11084,LSID724,release008,COMPLETED
-|profile_cagescan=NCig10050,,,
-|profile_srnaseq=SRhi10004,,,
-|profile_rnaseq=,,,
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000188,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000393,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0002036,UBERON:0002050,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003082,UBERON:0003104,UBERON:0004120,UBERON:0004290,UBERON:0005291,UBERON:0005423,UBERON:0009142
 |ancestors_in_disease_facet=
-|sample_description=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000162,FF:0104975
+|comment=
+|created_by=tmeehan
+|creation_date=2011-03-06T03:58:36Z
+|data_phase=2
+|datafreeze_phase=2
+|def="Skeletal muscle cells derived from myotubules." [GOC:tfm]
+|expression_enrichment_score=chr1:203055129..203055147,-!p1@MYOG!2.54!346.16!MYOG;;chr15:42749722..42749739,-!p2@ZFP106!2.34!376.96!ZFP106;;chr1:40105299..40105326,-!p1@HEYL!1.90!78.35!HEYL;;chr9:20382446..20382493,-!p4@MLLT3!1.79!61.25!MLLT3;;chr15:57511609..57511651,+!p2@TCF12!1.77!96.07!TCF12;;chr8:25902876..25902936,-!p1@EBF2!1.69!47.54!EBF2;;chr14:61116183..61116208,-!p1@SIX1!1.59!139.87!SIX1;;chr11:17741111..17741124,+!p1@MYOD1!1.57!36.50!MYOD1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.52!32.32!HOXC5;;chr1:170632285..170632309,+!p1@PRRX1!1.45!30.81!PRRX1;;chr7:15726296..15726315,-!p1@MEOX2!1.44!26.35!MEOX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.41!124.56!CREB3L1;;chr17:1959369..1959388,+!p2@HIC1!1.41!63.39!HIC1;;chr19:2867325..2867348,+!p1@ZNF556!1.41!24.93!ZNF556;;chr12:81110684..81110700,+!p1@MYF5!1.41!24.66!MYF5;;chr2:239148671..239148686,-!p1@HES6!1.40!86.63!HES6;;chr10:64576105..64576133,-!p1@EGR2!1.38!46.03!EGR2;;chr21:36421535..36421610,-!p2@RUNX1!1.36!77.01!RUNX1;;chr1:170633348..170633399,+!p2@PRRX1!1.34!28.13!PRRX1;;chr11:125034640..125034655,+!p1@PKNOX2!1.34!20.66!PKNOX2;;chr8:72756637..72756664,-!p3@MSC!1.33!23.33!MSC;;chr16:1031762..1031781,+!p1@SOX8!1.32!19.77!SOX8;;chr19:13134772..13134822,+!p2@NFIX!1.27!25.82!NFIX;;chr8:72756667..72756736,-!p2@MSC!1.25!26.26!MSC;;chr1:151032922..151032951,+!p2@MLLT11!1.23!26.62!MLLT11;;chr5:88178983..88179012,-!p1@MEF2C!1.22!118.23!MEF2C;;chr12:54393880..54393962,+!p1@HOXC9!1.18!14.07!HOXC9;;chr1:244214577..244214593,+!p1@ZNF238!1.18!13.98!ZNF238;;chr12:125003087..125003141,-!p4@NCOR2!1.17!17.72!NCOR2;;chr10:104001259..104001274,-!p1@PITX3!1.17!13.71!PITX3;;chr4:111558135..111558198,-!p2@PITX2!1.17!13.71!PITX2;;chr1:151032860..151032918,+!p1@MLLT11!1.15!152.96!MLLT11;;chr6:45296048..45296082,+!p1@RUNX2!1.15!15.14!RUNX2;;chr12:54378923..54378966,+!p1@HOXC10!1.14!12.91!HOXC10;;chr19:50432453..50432468,+!p1@ATF5!1.13!696.85!ATF5;;chr19:45260775..45260838,+!p5@BCL3!1.13!16.38!BCL3;;chr11:17741254..17741282,+!p2@MYOD1!1.11!11.84!MYOD1;;chr2:5832508..5832524,+!p1@SOX11!1.10!11.66!SOX11;;chr7:15726243..15726293,-!p2@MEOX2!1.08!11.13!MEOX2;;chr1:119530493..119530572,-!p1@TBX15!1.05!10.15!TBX15;;chr1:170633262..170633285,+!p3@PRRX1!1.04!11.31!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.03!16.65!CREB3L1;;chr2:24714729..24714761,+!p1@NCOA1!1.03!9.62!NCOA1;;chr7:27196267..27196311,-!p1@HOXA7!1.02!9.53!HOXA7;;chr11:125034605..125034636,+!p2@PKNOX2!1.00!8.90!PKNOX2;;chr5:72744594..72744609,-!p1@FOXD1!0.99!40.60!FOXD1;;chr1:170632959..170632987,+!p4@PRRX1!0.97!9.26!PRRX1;;chr17:1958388..1958404,+!p1@HIC1!0.96!53.78!HIC1;;chr18:53068911..53068935,-!p4@TCF4!0.95!8.90!TCF4;;chr10:131762504..131762555,-!p1@EBF3!0.95!8.01!EBF3;;chr12:125002827..125002855,-!p5@NCOR2!0.94!11.04!NCOR2;;chr3:25470156..25470227,+!p2@RARB!0.90!7.03!RARB;;chr2:45236540..45236577,-!p1@SIX2!0.90!6.94!SIX2;;chr7:150945754..150945789,-!p2@SMARCD3!0.89!21.81!SMARCD3;;chr1:170632723..170632739,+!p8@PRRX1!0.89!6.68!PRRX1;;chr5:134369905..134369972,-!p1@PITX1!0.88!10.24!PITX1;;chr19:49864746..49864780,-!p2@TEAD2!0.88!9.26!TEAD2;;chr1:18957333..18957375,+!p1@PAX7!0.87!6.41!PAX7;;chr2:145275947..145275981,-!p10@ZEB2!0.87!6.41!ZEB2;;chr12:3068544..3068597,+!p1@TEAD4!0.86!40.06!TEAD4;;chr8:72756063..72756125,-!p1@MSC!0.86!13.27!MSC;;chr1:165414227..165414242,-!p2@RXRG!0.86!6.32!RXRG;;chr11:125034586..125034604,+!p3@PKNOX2!0.86!6.23!PKNOX2;;chr4:111544219..111544240,-!p1@PITX2!0.86!6.23!PITX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.85!6.05!HOXC5;;chr8:80679993..80680011,-!p1@HEY1!0.84!8.90!HEY1;;chr18:22932080..22932170,-!p1@ZNF521!0.83!26.26!ZNF521;;chr12:48298765..48298783,-!p2@VDR!0.83!12.64!VDR;;chr1:23696448..23696453,-!p5@ZNF436!0.83!7.12!ZNF436;;chr12:54410948..54410992,+!p3@HOXC5!0.83!5.70!HOXC5;;chr3:52001448..52001478,-!p2@PCBP4!0.82!83.96!PCBP4;;chr14:61116168..61116180,-!p2@SIX1!0.82!6.50!SIX1;;chr1:40367668..40367684,-!p2@MYCL1!0.82!5.61!MYCL1;;chr15:57511589..57511608,+!p4@TCF12!0.82!5.61!TCF12;;chr8:25902668..25902680,-!p3@EBF2!0.81!5.52!EBF2;;chr2:176994408..176994492,+!p1@HOXD8!0.81!5.52!HOXD8;;chr22:19748231..19748317,+!p1@TBX1!0.81!5.43!TBX1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.81!5.43!PEG3;;chr12:125002739..125002756,-!p6@NCOR2!0.80!8.19!NCOR2;;chr8:72756267..72756296,-!p4@MSC!0.80!8.10!MSC;;chr12:54379029..54379057,+!p2@HOXC10!0.80!5.34!HOXC10;;chr10:104001289..104001310,-!p2@PITX3!0.80!5.25!PITX3;;chr20:30433396..30433414,-!p1@FOXS1!0.80!5.25!FOXS1;;chr11:17741084..17741094,+!p3@MYOD1!0.78!5.07!MYOD1;;chr13:73633131..73633149,+!p1@KLF5!0.77!57.96!KLF5;;chr3:141747459..141747475,-!p1@TFDP2!0.77!44.43!TFDP2;;chr8:49833948..49833973,-!p2@SNAI2!0.77!34.28!SNAI2;;chr2:145275162..145275202,-!p2@ZEB2!0.77!31.61!ZEB2;;chr20:51588873..51588953,+!p1@TSHZ2!0.77!6.59!TSHZ2;;chr4:174451370..174451387,-!p1@HAND2!0.77!4.90!HAND2;;chr1:41827095..41827155,+!p1@FOXO6!0.76!6.68!FOXO6;;chr2:119605214..119605230,-!p1@EN1!0.76!4.81!EN1;;chr16:31076273..31076288,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+|ffid_belonging_in_development=CL:0000355,CL:0000222
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 67: / Line 44: @@
 |fonse_treatment=
 |fonse_treatment_closure=
+|has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.CNhs11084.11282-116I4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.CNhs11084.11282-116I4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.CNhs11084.11282-116I4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.CNhs11084.11282-116I4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.CNhs11084.11282-116I4.hg38.nobarcode.ctss.bed.gz
+|id=FF:11282-116I4
+|is_a=EFO:0002091;;FF:0104975
+|is_obsolete=
+|library_id=CNhs11084
+|library_id_phase_based=2:CNhs11084
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11282
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GTAGAG.11282
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11282
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GTAGAG.11282
+|name=Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1
+|namespace=FANTOM5
+|part_of=
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+|profile_hcage=CNhs11084,LSID724,release008,COMPLETED
+|profile_rnaseq=
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+|rna_box=116
+|rna_catalog_number=CA150D-R10f
+|rna_concentration=1
+|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
+|rna_lot_number=1424
+|rna_od260/230=
+|rna_od260/280=
+|rna_position=I4
+|rna_rin=
+|rna_sample_type=total RNA
+|rna_tube_id=116I4
+|rna_weight_ug=10
+|rnaseq_library_id=SRhi10004.GTAGAG
+|sample_age=embryo 22week
+|sample_category=primary cells
+|sample_cell_catalog=N/A
+|sample_cell_line=
+|sample_cell_lot=N/A
+|sample_cell_type=skeletal muscle cell
+|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
+|sample_company=Cell Applications
+|sample_description=
+|sample_dev_stage=22 weeks old fetus
+|sample_disease=
+|sample_donor(cell lot)=
+|sample_ethnicity=U
+|sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.92879069752607e-243!GO:0043226;organelle;3.70733187604252e-195!GO:0043229;intracellular organelle;6.37269879927266e-195!GO:0005737;cytoplasm;3.63900984458414e-193!GO:0043231;intracellular membrane-bound organelle;6.06254621375055e-177!GO:0043227;membrane-bound organelle;1.83588092459527e-176!GO:0044422;organelle part;6.92788842445799e-140!GO:0044446;intracellular organelle part;1.20255624015233e-138!GO:0044444;cytoplasmic part;1.130835241887e-132!GO:0032991;macromolecular complex;1.07268849596465e-106!GO:0005515;protein binding;4.79181577876444e-95!GO:0030529;ribonucleoprotein complex;1.426716615088e-82!GO:0044238;primary metabolic process;1.53011392331736e-78!GO:0044237;cellular metabolic process;8.25617441485996e-78!GO:0005634;nucleus;2.8283523209662e-74!GO:0043170;macromolecule metabolic process;1.89965445408702e-73!GO:0043233;organelle lumen;3.16113487230231e-71!GO:0031974;membrane-enclosed lumen;3.16113487230231e-71!GO:0044428;nuclear part;2.0029789254926e-70!GO:0003723;RNA binding;3.34031492666887e-66!GO:0043234;protein complex;2.04109535366502e-56!GO:0005739;mitochondrion;8.44899139344837e-56!GO:0016043;cellular component organization and biogenesis;2.37185353085417e-53!GO:0005840;ribosome;1.11838251222742e-48!GO:0006396;RNA processing;3.47378370801395e-46!GO:0043283;biopolymer metabolic process;1.3148915523728e-43!GO:0019538;protein metabolic process;2.18575244541103e-43!GO:0031090;organelle membrane;2.48811605083476e-43!GO:0006412;translation;3.98469558182409e-43!GO:0010467;gene expression;1.01654984729088e-42!GO:0043228;non-membrane-bound organelle;2.61950870797919e-42!GO:0043232;intracellular non-membrane-bound organelle;2.61950870797919e-42!GO:0003735;structural constituent of ribosome;2.687119694552e-42!GO:0031981;nuclear lumen;7.87313120683442e-42!GO:0044260;cellular macromolecule metabolic process;1.27506965027573e-38!GO:0044429;mitochondrial part;1.34559003921719e-38!GO:0015031;protein transport;1.92123310199646e-38!GO:0033036;macromolecule localization;2.81798305474557e-38!GO:0016071;mRNA metabolic process;5.59722195189014e-38!GO:0031967;organelle envelope;1.34008477010177e-37!GO:0044267;cellular protein metabolic process;1.43156084457377e-37!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.12971741041897e-37!GO:0031975;envelope;2.72644242016296e-37!GO:0033279;ribosomal subunit;8.44035344427944e-37!GO:0008104;protein localization;8.67153499312825e-35!GO:0009058;biosynthetic process;9.02419707885375e-35!GO:0008380;RNA splicing;1.44570132200529e-34!GO:0045184;establishment of protein localization;2.26158547434414e-34!GO:0005829;cytosol;4.00169575461181e-34!GO:0046907;intracellular transport;2.53091269265123e-33!GO:0009059;macromolecule biosynthetic process;3.70390982845923e-33!GO:0044249;cellular biosynthetic process;5.26989716978061e-33!GO:0006996;organelle organization and biogenesis;6.74741276032167e-33!GO:0006397;mRNA processing;1.38837889867969e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.22228760370546e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.11372735810597e-27!GO:0065003;macromolecular complex assembly;1.76092387354239e-27!GO:0006886;intracellular protein transport;6.01589749185379e-27!GO:0022607;cellular component assembly;6.78988038465019e-27!GO:0005654;nucleoplasm;4.04640792969911e-26!GO:0005740;mitochondrial envelope;7.83418819615495e-26!GO:0019866;organelle inner membrane;5.26616593187017e-25!GO:0005681;spliceosome;1.04081279891275e-24!GO:0031966;mitochondrial membrane;2.39161078433367e-24!GO:0005743;mitochondrial inner membrane;3.4811126666043e-23!GO:0003676;nucleic acid binding;8.80804620789462e-23!GO:0044451;nucleoplasm part;1.34659420366093e-21!GO:0044445;cytosolic part;2.03702412098128e-21!GO:0005783;endoplasmic reticulum;1.25716091821791e-20!GO:0006119;oxidative phosphorylation;1.95531073180862e-20!GO:0016070;RNA metabolic process;6.16967138930707e-20!GO:0051641;cellular localization;8.91108129133306e-20!GO:0000166;nucleotide binding;9.19633226407281e-20!GO:0051649;establishment of cellular localization;1.59769030482192e-19!GO:0006259;DNA metabolic process;3.8579765036932e-19!GO:0006457;protein folding;4.5726127030694e-19!GO:0015935;small ribosomal subunit;7.61389271206206e-19!GO:0015934;large ribosomal subunit;7.61389271206206e-19!GO:0008134;transcription factor binding;1.72253471163102e-18!GO:0044455;mitochondrial membrane part;2.75226300448338e-18!GO:0006512;ubiquitin cycle;9.02547578628069e-18!GO:0012505;endomembrane system;3.95562624400094e-17!GO:0016462;pyrophosphatase activity;4.9856606327984e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.94052468536798e-17!GO:0005730;nucleolus;7.24083850252166e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;7.68941870762525e-17!GO:0044432;endoplasmic reticulum part;1.00423905351694e-16!GO:0048770;pigment granule;1.02891314223026e-16!GO:0042470;melanosome;1.02891314223026e-16!GO:0022618;protein-RNA complex assembly;1.26451839299609e-16!GO:0017111;nucleoside-triphosphatase activity;1.90617313890253e-16!GO:0016874;ligase activity;2.03438634728164e-16!GO:0005746;mitochondrial respiratory chain;6.186070477039e-16!GO:0007049;cell cycle;7.54120214448721e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.39940329696458e-15!GO:0031980;mitochondrial lumen;1.41657166552419e-15!GO:0005759;mitochondrial matrix;1.41657166552419e-15!GO:0008135;translation factor activity, nucleic acid binding;1.79829921678702e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;8.26262718542192e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.22488625188922e-14!GO:0019941;modification-dependent protein catabolic process;1.52924109913367e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.52924109913367e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.92887591311887e-14!GO:0051186;cofactor metabolic process;2.14207299145736e-14!GO:0006605;protein targeting;2.19559895469421e-14!GO:0044257;cellular protein catabolic process;2.50857453775914e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.60745779484397e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.48707615599782e-14!GO:0003954;NADH dehydrogenase activity;3.48707615599782e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.48707615599782e-14!GO:0044265;cellular macromolecule catabolic process;3.95601944531627e-14!GO:0043285;biopolymer catabolic process;5.31627889124908e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.1002246787269e-13!GO:0005794;Golgi apparatus;2.57992732438059e-13!GO:0005761;mitochondrial ribosome;2.68445677993062e-13!GO:0000313;organellar ribosome;2.68445677993062e-13!GO:0032553;ribonucleotide binding;2.71775439890205e-13!GO:0032555;purine ribonucleotide binding;2.71775439890205e-13!GO:0048193;Golgi vesicle transport;2.78356728032737e-13!GO:0030163;protein catabolic process;3.77758250837388e-13!GO:0017076;purine nucleotide binding;8.71106014769127e-13!GO:0042254;ribosome biogenesis and assembly;9.0400305050193e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.73809249136619e-12!GO:0000375;RNA splicing, via transesterification reactions;1.73809249136619e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.73809249136619e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.80622975063695e-12!GO:0042773;ATP synthesis coupled electron transport;1.80622975063695e-12!GO:0008092;cytoskeletal protein binding;1.94754545250136e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.96006587127624e-12!GO:0045271;respiratory chain complex I;1.96006587127624e-12!GO:0005747;mitochondrial respiratory chain complex I;1.96006587127624e-12!GO:0051082;unfolded protein binding;1.99499250945077e-12!GO:0016192;vesicle-mediated transport;2.9863695996666e-12!GO:0009057;macromolecule catabolic process;3.10218444441833e-12!GO:0003712;transcription cofactor activity;3.76350665496664e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.66822647188554e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.90160587143276e-12!GO:0043412;biopolymer modification;4.90160587143276e-12!GO:0005635;nuclear envelope;5.44381697986117e-12!GO:0022402;cell cycle process;8.81217247367978e-12!GO:0031965;nuclear membrane;1.41609890050305e-11!GO:0003743;translation initiation factor activity;2.57654748217066e-11!GO:0006732;coenzyme metabolic process;4.86243439358259e-11!GO:0005793;ER-Golgi intermediate compartment;5.10651113968668e-11!GO:0005788;endoplasmic reticulum lumen;5.21112880165001e-11!GO:0006366;transcription from RNA polymerase II promoter;5.59217498442665e-11!GO:0006464;protein modification process;8.67141990365949e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.27545427555971e-10!GO:0006913;nucleocytoplasmic transport;2.59853282019427e-10!GO:0005524;ATP binding;3.35135432811597e-10!GO:0006413;translational initiation;3.8694890194811e-10!GO:0000278;mitotic cell cycle;3.89192670770172e-10!GO:0005789;endoplasmic reticulum membrane;4.13860821718313e-10!GO:0044248;cellular catabolic process;4.28244430818887e-10!GO:0006446;regulation of translational initiation;5.28765351750258e-10!GO:0016604;nuclear body;5.63854891600518e-10!GO:0051169;nuclear transport;6.85186182837647e-10!GO:0032559;adenyl ribonucleotide binding;7.45859183909434e-10!GO:0006163;purine nucleotide metabolic process;9.08344725363903e-10!GO:0006974;response to DNA damage stimulus;1.01675961232872e-09!GO:0009259;ribonucleotide metabolic process;1.03391002643878e-09!GO:0005694;chromosome;1.24003880738893e-09!GO:0044453;nuclear membrane part;1.29900638447059e-09!GO:0051276;chromosome organization and biogenesis;1.38564660070117e-09!GO:0009150;purine ribonucleotide metabolic process;1.61862820179967e-09!GO:0008565;protein transporter activity;1.71182732680973e-09!GO:0043687;post-translational protein modification;1.87490284329192e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;2.3976851818046e-09!GO:0030554;adenyl nucleotide binding;2.66438594302622e-09!GO:0008639;small protein conjugating enzyme activity;5.23196979279327e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.0049435018596e-09!GO:0050794;regulation of cellular process;7.97403998175154e-09!GO:0012501;programmed cell death;8.26042826401621e-09!GO:0004842;ubiquitin-protein ligase activity;8.44740673171262e-09!GO:0015629;actin cytoskeleton;8.71306393237952e-09!GO:0006323;DNA packaging;8.71584278880609e-09!GO:0007517;muscle development;9.84984879280835e-09!GO:0009055;electron carrier activity;1.04860277235059e-08!GO:0019787;small conjugating protein ligase activity;1.35126271279231e-08!GO:0006915;apoptosis;1.38364442643588e-08!GO:0016607;nuclear speck;2.07155108178602e-08!GO:0003924;GTPase activity;2.14522234757678e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.30459346960973e-08!GO:0065002;intracellular protein transport across a membrane;2.42461090853002e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.75140036340744e-08!GO:0017038;protein import;3.06652710816912e-08!GO:0006164;purine nucleotide biosynthetic process;3.18791065068248e-08!GO:0009141;nucleoside triphosphate metabolic process;3.80494367062031e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.02612763050805e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.02612763050805e-08!GO:0006399;tRNA metabolic process;4.23499260260693e-08!GO:0009060;aerobic respiration;4.62615253832584e-08!GO:0042623;ATPase activity, coupled;5.13022228669765e-08!GO:0050789;regulation of biological process;5.1358502800828e-08!GO:0006364;rRNA processing;5.53076457089207e-08!GO:0009152;purine ribonucleotide biosynthetic process;5.88098984957918e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.11534783299599e-08!GO:0044427;chromosomal part;6.41175902562878e-08!GO:0009260;ribonucleotide biosynthetic process;6.92984195734644e-08!GO:0051726;regulation of cell cycle;8.04582302604206e-08!GO:0000074;regulation of progression through cell cycle;9.13627384262291e-08!GO:0006888;ER to Golgi vesicle-mediated transport;9.35540278772382e-08!GO:0016887;ATPase activity;9.35540278772382e-08!GO:0048523;negative regulation of cellular process;9.68802464818831e-08!GO:0045333;cellular respiration;1.08437675368285e-07!GO:0005643;nuclear pore;1.09212266711919e-07!GO:0016072;rRNA metabolic process;1.11902542747237e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.12595433779072e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.12595433779072e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.12595433779072e-07!GO:0046034;ATP metabolic process;1.18157306877805e-07!GO:0005667;transcription factor complex;1.18157306877805e-07!GO:0044449;contractile fiber part;1.2370685804717e-07!GO:0065004;protein-DNA complex assembly;1.27879473652298e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.33224654775181e-07!GO:0008219;cell death;1.40804760705586e-07!GO:0016265;death;1.40804760705586e-07!GO:0003779;actin binding;1.48598528160216e-07!GO:0016881;acid-amino acid ligase activity;1.65784370438264e-07!GO:0050657;nucleic acid transport;1.66148717091124e-07!GO:0051236;establishment of RNA localization;1.66148717091124e-07!GO:0050658;RNA transport;1.66148717091124e-07!GO:0007010;cytoskeleton organization and biogenesis;1.67284927176191e-07!GO:0006281;DNA repair;1.67284927176191e-07!GO:0006403;RNA localization;1.961515424211e-07!GO:0015986;ATP synthesis coupled proton transport;2.3364897264893e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.3364897264893e-07!GO:0004386;helicase activity;2.36632567188338e-07!GO:0043038;amino acid activation;2.70777150814155e-07!GO:0006418;tRNA aminoacylation for protein translation;2.70777150814155e-07!GO:0043039;tRNA aminoacylation;2.70777150814155e-07!GO:0006461;protein complex assembly;2.76126609804666e-07!GO:0009719;response to endogenous stimulus;3.04293368071412e-07!GO:0030532;small nuclear ribonucleoprotein complex;3.83883783434181e-07!GO:0030029;actin filament-based process;3.85427497220613e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.97510160398735e-07!GO:0006099;tricarboxylic acid cycle;4.08321092280961e-07!GO:0046356;acetyl-CoA catabolic process;4.08321092280961e-07!GO:0043292;contractile fiber;4.43672324389349e-07!GO:0006333;chromatin assembly or disassembly;4.71205540035668e-07!GO:0030036;actin cytoskeleton organization and biogenesis;5.03126977748828e-07!GO:0048475;coated membrane;5.03126977748828e-07!GO:0030117;membrane coat;5.03126977748828e-07!GO:0030120;vesicle coat;5.54346421756508e-07!GO:0030662;coated vesicle membrane;5.54346421756508e-07!GO:0019829;cation-transporting ATPase activity;5.95759709393324e-07!GO:0008026;ATP-dependent helicase activity;7.29076274899929e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;8.5843241354692e-07!GO:0022403;cell cycle phase;8.80096454485713e-07!GO:0003714;transcription corepressor activity;9.14530326018782e-07!GO:0009142;nucleoside triphosphate biosynthetic process;9.19074709194714e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.19074709194714e-07!GO:0031252;leading edge;9.31961474499985e-07!GO:0051246;regulation of protein metabolic process;1.01548542487453e-06!GO:0051187;cofactor catabolic process;1.10226805465737e-06!GO:0009109;coenzyme catabolic process;1.11203622339756e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.11367342901865e-06!GO:0051188;cofactor biosynthetic process;1.17950258416016e-06!GO:0000087;M phase of mitotic cell cycle;1.19069933608036e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.32929457579749e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.32929457579749e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.32929457579749e-06!GO:0007067;mitosis;1.40297036147458e-06!GO:0015630;microtubule cytoskeleton;1.41817215587051e-06!GO:0006260;DNA replication;1.49685716782668e-06!GO:0043566;structure-specific DNA binding;1.52687801002981e-06!GO:0006084;acetyl-CoA metabolic process;1.7051238317552e-06!GO:0051301;cell division;2.03475659987994e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.1914007248157e-06!GO:0003697;single-stranded DNA binding;2.20827019766696e-06!GO:0000785;chromatin;2.57055440100663e-06!GO:0046930;pore complex;3.19796719595404e-06!GO:0016564;transcription repressor activity;3.36876783837476e-06!GO:0048519;negative regulation of biological process;3.39550436263823e-06!GO:0006752;group transfer coenzyme metabolic process;3.66454733636456e-06!GO:0005525;GTP binding;4.11278938996181e-06!GO:0006754;ATP biosynthetic process;4.11278938996181e-06!GO:0006753;nucleoside phosphate metabolic process;4.11278938996181e-06!GO:0005768;endosome;4.35511218348678e-06!GO:0032446;protein modification by small protein conjugation;4.47281452017214e-06!GO:0000245;spliceosome assembly;4.94532436001209e-06!GO:0051170;nuclear import;5.40017650553442e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.55343823401513e-06!GO:0051028;mRNA transport;5.69326222238841e-06!GO:0005798;Golgi-associated vesicle;5.70059455842575e-06!GO:0016567;protein ubiquitination;6.08240489979895e-06!GO:0016563;transcription activator activity;6.39623493035074e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.98123620924712e-06!GO:0006606;protein import into nucleus;7.42111111939388e-06!GO:0016853;isomerase activity;7.48656897252123e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.72978735226368e-06!GO:0009056;catabolic process;8.69528047536562e-06!GO:0045259;proton-transporting ATP synthase complex;9.01273954218866e-06!GO:0003713;transcription coactivator activity;1.05811534441061e-05!GO:0006334;nucleosome assembly;1.05811534441061e-05!GO:0019222;regulation of metabolic process;1.12828179137815e-05!GO:0009117;nucleotide metabolic process;1.15057568560085e-05!GO:0006613;cotranslational protein targeting to membrane;1.2559579430902e-05!GO:0031324;negative regulation of cellular metabolic process;1.26842018742249e-05!GO:0016568;chromatin modification;1.29986819593324e-05!GO:0004298;threonine endopeptidase activity;1.43058109282819e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.79168638192569e-05!GO:0051427;hormone receptor binding;1.79295221991845e-05!GO:0000151;ubiquitin ligase complex;1.8657268444492e-05!GO:0007005;mitochondrion organization and biogenesis;1.97844427502727e-05!GO:0051789;response to protein stimulus;1.97844427502727e-05!GO:0006986;response to unfolded protein;1.97844427502727e-05!GO:0042981;regulation of apoptosis;1.97844427502727e-05!GO:0044431;Golgi apparatus part;2.14826875330347e-05!GO:0044440;endosomal part;2.17861497455944e-05!GO:0010008;endosome membrane;2.17861497455944e-05!GO:0045786;negative regulation of progression through cell cycle;2.25514679934456e-05!GO:0031497;chromatin assembly;2.32169247417711e-05!GO:0043067;regulation of programmed cell death;2.52828211441359e-05!GO:0030016;myofibril;3.55867188856198e-05!GO:0035257;nuclear hormone receptor binding;3.86566635070149e-05!GO:0009108;coenzyme biosynthetic process;3.8725780135457e-05!GO:0032561;guanyl ribonucleotide binding;3.8725780135457e-05!GO:0019001;guanyl nucleotide binding;3.8725780135457e-05!GO:0009892;negative regulation of metabolic process;3.93645253305829e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.25721803387613e-05!GO:0030867;rough endoplasmic reticulum membrane;4.3719720021698e-05!GO:0016491;oxidoreductase activity;4.37324033683836e-05!GO:0005856;cytoskeleton;4.97226037691142e-05!GO:0003724;RNA helicase activity;5.08873295412043e-05!GO:0016859;cis-trans isomerase activity;5.45475930782616e-05!GO:0043069;negative regulation of programmed cell death;5.47134003098224e-05!GO:0016481;negative regulation of transcription;5.48967050621311e-05!GO:0016023;cytoplasmic membrane-bound vesicle;5.754219269194e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.68387687669782e-05!GO:0045454;cell redox homeostasis;6.68765417477963e-05!GO:0005865;striated muscle thin filament;6.76719559390107e-05!GO:0031988;membrane-bound vesicle;7.24303608847182e-05!GO:0008361;regulation of cell size;7.44520698629868e-05!GO:0043066;negative regulation of apoptosis;7.58520496751375e-05!GO:0016049;cell growth;8.94409909161939e-05!GO:0005791;rough endoplasmic reticulum;9.1636879345396e-05!GO:0000279;M phase;0.000110305641749633!GO:0006916;anti-apoptosis;0.000111876000783305!GO:0008307;structural constituent of muscle;0.000114424394765199!GO:0014706;striated muscle development;0.000127791563712234!GO:0043021;ribonucleoprotein binding;0.0001330651424082!GO:0030017;sarcomere;0.000157112191856855!GO:0006793;phosphorus metabolic process;0.000159442526990791!GO:0006796;phosphate metabolic process;0.000159442526990791!GO:0065007;biological regulation;0.00016374773663618!GO:0005770;late endosome;0.000165563357754926!GO:0044420;extracellular matrix part;0.000170019016770954!GO:0016126;sterol biosynthetic process;0.000180561285406728!GO:0031982;vesicle;0.0001904305047973!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000191948595057083!GO:0008654;phospholipid biosynthetic process;0.000197635486691386!GO:0005762;mitochondrial large ribosomal subunit;0.000198181868495281!GO:0000315;organellar large ribosomal subunit;0.000198181868495281!GO:0031410;cytoplasmic vesicle;0.000199736859809087!GO:0016044;membrane organization and biogenesis;0.000209327400190572!GO:0016310;phosphorylation;0.000219236540359549!GO:0000314;organellar small ribosomal subunit;0.000242810786643565!GO:0005763;mitochondrial small ribosomal subunit;0.000242810786643565!GO:0033116;ER-Golgi intermediate compartment membrane;0.000282296652438616!GO:0003729;mRNA binding;0.000289982755193482!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000343380234225519!GO:0030133;transport vesicle;0.000343395184951318!GO:0043284;biopolymer biosynthetic process;0.000357000510602885!GO:0006612;protein targeting to membrane;0.000365838610980038!GO:0030663;COPI coated vesicle membrane;0.000385838520688427!GO:0030126;COPI vesicle coat;0.000385838520688427!GO:0016779;nucleotidyltransferase activity;0.000404860460938377!GO:0005769;early endosome;0.000426795643031956!GO:0007519;skeletal muscle development;0.000426795643031956!GO:0051329;interphase of mitotic cell cycle;0.000456940823285485!GO:0008250;oligosaccharyl transferase complex;0.000468496848598072!GO:0003899;DNA-directed RNA polymerase activity;0.000472481472988389!GO:0001558;regulation of cell growth;0.000488333948642377!GO:0043623;cellular protein complex assembly;0.000493105824577964!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000537287386326067!GO:0008186;RNA-dependent ATPase activity;0.000582894623489534!GO:0005813;centrosome;0.000611176475021339!GO:0005048;signal sequence binding;0.000623470104056903!GO:0005885;Arp2/3 protein complex;0.000630664578679458!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000711807637515122!GO:0006414;translational elongation;0.000803949467482663!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000811173930524229!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000825303352410053!GO:0004576;oligosaccharyl transferase activity;0.00083419722142815!GO:0016740;transferase activity;0.000895502403100209!GO:0019899;enzyme binding;0.000913003973159274!GO:0051168;nuclear export;0.000923261982153935!GO:0005905;coated pit;0.000956408999679224!GO:0016363;nuclear matrix;0.000986734542085613!GO:0001725;stress fiber;0.00100891420548502!GO:0032432;actin filament bundle;0.00100891420548502!GO:0006091;generation of precursor metabolites and energy;0.0010218367535599!GO:0007264;small GTPase mediated signal transduction;0.00105240534245647!GO:0019867;outer membrane;0.00112169194499592!GO:0030137;COPI-coated vesicle;0.00113152505775366!GO:0043681;protein import into mitochondrion;0.00114742175148011!GO:0051920;peroxiredoxin activity;0.00114742175148011!GO:0051128;regulation of cellular component organization and biogenesis;0.00115658773849698!GO:0051325;interphase;0.00118538178194323!GO:0031968;organelle outer membrane;0.00121224965502302!GO:0006350;transcription;0.00123575878144173!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00123575878144173!GO:0000139;Golgi membrane;0.00126697713175146!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00129493684330224!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00129493684330224!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00129493684330224!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00129493684330224!GO:0030027;lamellipodium;0.00129539902340681!GO:0031323;regulation of cellular metabolic process;0.00137765405411661!GO:0006626;protein targeting to mitochondrion;0.00139930845024368!GO:0033673;negative regulation of kinase activity;0.00141190029685145!GO:0006469;negative regulation of protein kinase activity;0.00141190029685145!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00155086208393103!GO:0003746;translation elongation factor activity;0.00156439256757265!GO:0004004;ATP-dependent RNA helicase activity;0.00157125168403743!GO:0018196;peptidyl-asparagine modification;0.00161138607688508!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00161138607688508!GO:0006891;intra-Golgi vesicle-mediated transport;0.00176154805157673!GO:0005773;vacuole;0.00181355890416644!GO:0005815;microtubule organizing center;0.0018696822500206!GO:0051252;regulation of RNA metabolic process;0.00210798902436973!GO:0043488;regulation of mRNA stability;0.00213932239654772!GO:0043487;regulation of RNA stability;0.00213932239654772!GO:0045892;negative regulation of transcription, DNA-dependent;0.00213932239654772!GO:0051348;negative regulation of transferase activity;0.00220448640741981!GO:0046474;glycerophospholipid biosynthetic process;0.00222638362697509!GO:0019843;rRNA binding;0.00224362918432917!GO:0030521;androgen receptor signaling pathway;0.00226245060750397!GO:0015631;tubulin binding;0.00230698624662581!GO:0048500;signal recognition particle;0.00241939021882673!GO:0005581;collagen;0.00244282877587624!GO:0005874;microtubule;0.0025026913046017!GO:0035258;steroid hormone receptor binding;0.00253010866455636!GO:0006402;mRNA catabolic process;0.00255467730418119!GO:0006695;cholesterol biosynthetic process;0.00261922712579326!GO:0030880;RNA polymerase complex;0.0026522544816226!GO:0003690;double-stranded DNA binding;0.00277150276277185!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00295203070465254!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00306300413614817!GO:0045941;positive regulation of transcription;0.00311303690186021!GO:0007050;cell cycle arrest;0.00312704420547364!GO:0031072;heat shock protein binding;0.00313037805597874!GO:0001726;ruffle;0.00317630981655882!GO:0044452;nucleolar part;0.00340303720531075!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00341148134482045!GO:0003702;RNA polymerase II transcription factor activity;0.00352747858300555!GO:0051101;regulation of DNA binding;0.00352747858300555!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00381846219148305!GO:0030134;ER to Golgi transport vesicle;0.0039670480728584!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00405351862771296!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00406139904719204!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00425965971128825!GO:0051087;chaperone binding;0.00451117591788382!GO:0005741;mitochondrial outer membrane;0.00451117591788382!GO:0007006;mitochondrial membrane organization and biogenesis;0.00451117591788382!GO:0009165;nucleotide biosynthetic process;0.00451117591788382!GO:0055003;cardiac myofibril assembly;0.0047600583600396!GO:0055013;cardiac muscle cell development;0.0047600583600396!GO:0010468;regulation of gene expression;0.00483940937845209!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00483940937845209!GO:0033043;regulation of organelle organization and biogenesis;0.00483940937845209!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00507200496881579!GO:0005523;tropomyosin binding;0.00517690439184953!GO:0000049;tRNA binding;0.00521889913763451!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00533479856398126!GO:0000428;DNA-directed RNA polymerase complex;0.00533479856398126!GO:0008154;actin polymerization and/or depolymerization;0.00539403639338088!GO:0031124;mRNA 3'-end processing;0.00540681092192895!GO:0005657;replication fork;0.00550404427803712!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00578688367178212!GO:0045047;protein targeting to ER;0.00578688367178212!GO:0008312;7S RNA binding;0.00590140976237427!GO:0030127;COPII vesicle coat;0.00600509983410247!GO:0012507;ER to Golgi transport vesicle membrane;0.00600509983410247!GO:0051287;NAD binding;0.00602423235422622!GO:0006383;transcription from RNA polymerase III promoter;0.00610705629593564!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00613510751008146!GO:0048471;perinuclear region of cytoplasm;0.00616419677923646!GO:0045893;positive regulation of transcription, DNA-dependent;0.00619426173435038!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00619426173435038!GO:0015002;heme-copper terminal oxidase activity;0.00619426173435038!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00619426173435038!GO:0004129;cytochrome-c oxidase activity;0.00619426173435038!GO:0006595;polyamine metabolic process;0.0063526528004191!GO:0017166;vinculin binding;0.00652427834714333!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00658440480924784!GO:0007265;Ras protein signal transduction;0.006658937275824!GO:0006839;mitochondrial transport;0.00690984271507182!GO:0000059;protein import into nucleus, docking;0.00702387197056702!GO:0030176;integral to endoplasmic reticulum membrane;0.0070518755228892!GO:0015992;proton transport;0.00707553888646145!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00709641259186809!GO:0005684;U2-dependent spliceosome;0.00714337095669501!GO:0005586;collagen type III;0.00732608663068296!GO:0030118;clathrin coat;0.00733589208064971!GO:0006509;membrane protein ectodomain proteolysis;0.00736116465512094!GO:0033619;membrane protein proteolysis;0.00736116465512094!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00747546384725858!GO:0005583;fibrillar collagen;0.00747546384725858!GO:0005819;spindle;0.00747824248397634!GO:0000323;lytic vacuole;0.007588966863373!GO:0005764;lysosome;0.007588966863373!GO:0048741;skeletal muscle fiber development;0.00759603034830999!GO:0048747;muscle fiber development;0.00759603034830999!GO:0030132;clathrin coat of coated pit;0.00789326713952284!GO:0048487;beta-tubulin binding;0.00806189165081712!GO:0000786;nucleosome;0.00817141376401568!GO:0006650;glycerophospholipid metabolic process;0.00819542177321988!GO:0030658;transport vesicle membrane;0.00836443947567134!GO:0006818;hydrogen transport;0.00863354306858602!GO:0031418;L-ascorbic acid binding;0.00863354306858602!GO:0005862;muscle thin filament tropomyosin;0.00866929711233737!GO:0016787;hydrolase activity;0.00871646674497168!GO:0001527;microfibril;0.00947784163772569!GO:0016251;general RNA polymerase II transcription factor activity;0.00951056018547556!GO:0046483;heterocycle metabolic process;0.00967849691337239!GO:0006352;transcription initiation;0.00980902145655566!GO:0065009;regulation of a molecular function;0.00992200652481642!GO:0000339;RNA cap binding;0.0102739962497988!GO:0003682;chromatin binding;0.0104308920865262!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0104762601366012!GO:0016197;endosome transport;0.010758607441381!GO:0006261;DNA-dependent DNA replication;0.0108654638018224!GO:0008180;signalosome;0.01097093108104!GO:0022890;inorganic cation transmembrane transporter activity;0.01097093108104!GO:0051098;regulation of binding;0.0111934419365695!GO:0008139;nuclear localization sequence binding;0.0112046059779673!GO:0050681;androgen receptor binding;0.0112278116698769!GO:0005869;dynactin complex;0.0116428102806868!GO:0006401;RNA catabolic process;0.0117785405732084!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0117797199016521!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0117797199016521!GO:0003711;transcription elongation regulator activity;0.0121330587769471!GO:0030041;actin filament polymerization;0.0122345057056853!GO:0044262;cellular carbohydrate metabolic process;0.0124166146774765!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0125340985928793!GO:0031901;early endosome membrane;0.0127900316091103!GO:0003756;protein disulfide isomerase activity;0.0130197207740596!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0130197207740596!GO:0006897;endocytosis;0.0131140675886646!GO:0010324;membrane invagination;0.0131140675886646!GO:0048468;cell development;0.0132446074764735!GO:0007179;transforming growth factor beta receptor signaling pathway;0.013262710422582!GO:0005832;chaperonin-containing T-complex;0.0133822045493436!GO:0043022;ribosome binding;0.013561300451533!GO:0008610;lipid biosynthetic process;0.0135840736803883!GO:0007051;spindle organization and biogenesis;0.0137683912963653!GO:0046489;phosphoinositide biosynthetic process;0.0138207202895847!GO:0016408;C-acyltransferase activity;0.0142336443255465!GO:0007243;protein kinase cascade;0.0147605861974336!GO:0003684;damaged DNA binding;0.0149259677096488!GO:0008033;tRNA processing;0.0149259677096488!GO:0030518;steroid hormone receptor signaling pathway;0.0150556126051227!GO:0006979;response to oxidative stress;0.0150790410624761!GO:0006405;RNA export from nucleus;0.0150790410624761!GO:0051539;4 iron, 4 sulfur cluster binding;0.0155015951376679!GO:0008047;enzyme activator activity;0.0155015951376679!GO:0008286;insulin receptor signaling pathway;0.0156174808244117!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0165113871471157!GO:0006740;NADPH regeneration;0.0166786565261989!GO:0006098;pentose-phosphate shunt;0.0166786565261989!GO:0003678;DNA helicase activity;0.0169069373327154!GO:0000902;cell morphogenesis;0.0176236805167728!GO:0032989;cellular structure morphogenesis;0.0176236805167728!GO:0016584;nucleosome positioning;0.0178422185939912!GO:0048522;positive regulation of cellular process;0.0179173842341479!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0180797607161133!GO:0001952;regulation of cell-matrix adhesion;0.0181568957752389!GO:0031970;organelle envelope lumen;0.0182130309191232!GO:0040008;regulation of growth;0.0188847609709332!GO:0030660;Golgi-associated vesicle membrane;0.0196452466493596!GO:0004177;aminopeptidase activity;0.0198792427734878!GO:0032774;RNA biosynthetic process;0.0202103201283628!GO:0005758;mitochondrial intermembrane space;0.0203654965544475!GO:0031123;RNA 3'-end processing;0.0204403324162013!GO:0032535;regulation of cellular component size;0.020733657001421!GO:0042802;identical protein binding;0.0208008080247455!GO:0031529;ruffle organization and biogenesis;0.0208008080247455!GO:0006351;transcription, DNA-dependent;0.0208008080247455!GO:0031543;peptidyl-proline dioxygenase activity;0.0208008080247455!GO:0008629;induction of apoptosis by intracellular signals;0.0211072215223632!GO:0019798;procollagen-proline dioxygenase activity;0.0212806712549247!GO:0008320;protein transmembrane transporter activity;0.0213039420884771!GO:0016272;prefoldin complex;0.0214276997534747!GO:0030031;cell projection biogenesis;0.0214276997534747!GO:0030032;lamellipodium biogenesis;0.0214276997534747!GO:0035035;histone acetyltransferase binding;0.0224855536881477!GO:0005637;nuclear inner membrane;0.02252405321535!GO:0046467;membrane lipid biosynthetic process;0.02252405321535!GO:0006720;isoprenoid metabolic process;0.0230258737788035!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0234226528253434!GO:0000209;protein polyubiquitination;0.023546778243837!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.023822013253241!GO:0015399;primary active transmembrane transporter activity;0.023822013253241!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0243778321026322!GO:0031674;I band;0.0243778321026322!GO:0030832;regulation of actin filament length;0.0244854308606286!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0250081272740939!GO:0006376;mRNA splice site selection;0.0256820637677015!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0256820637677015!GO:0008147;structural constituent of bone;0.0269276118002843!GO:0000096;sulfur amino acid metabolic process;0.0278364439273023!GO:0008652;amino acid biosynthetic process;0.0279788865273872!GO:0009303;rRNA transcription;0.0279788865273872!GO:0017022;myosin binding;0.0282933047966228!GO:0008022;protein C-terminus binding;0.0282947114933576!GO:0051540;metal cluster binding;0.0284065938117026!GO:0051536;iron-sulfur cluster binding;0.0284065938117026!GO:0006338;chromatin remodeling;0.0284557177525123!GO:0000792;heterochromatin;0.0288775372559915!GO:0006302;double-strand break repair;0.0292326701709765!GO:0006778;porphyrin metabolic process;0.0293903319232446!GO:0033013;tetrapyrrole metabolic process;0.0293903319232446!GO:0040029;regulation of gene expression, epigenetic;0.0294899652720589!GO:0032984;macromolecular complex disassembly;0.0298082669410025!GO:0006892;post-Golgi vesicle-mediated transport;0.0300627370098632!GO:0043624;cellular protein complex disassembly;0.0305847076247868!GO:0050811;GABA receptor binding;0.0311874602941345!GO:0006984;ER-nuclear signaling pathway;0.0311874602941345!GO:0006144;purine base metabolic process;0.031300420249415!GO:0005588;collagen type V;0.0325012544652968!GO:0007160;cell-matrix adhesion;0.0325012544652968!GO:0000082;G1/S transition of mitotic cell cycle;0.0325574260295739!GO:0000075;cell cycle checkpoint;0.0334153887323127!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0335435539842848!GO:0031589;cell-substrate adhesion;0.0340035233875661!GO:0007030;Golgi organization and biogenesis;0.0341230497010759!GO:0008538;proteasome activator activity;0.035321332824386!GO:0032507;maintenance of cellular protein localization;0.0353466785817225!GO:0005669;transcription factor TFIID complex;0.0353965579937429!GO:0005096;GTPase activator activity;0.0354032843547295!GO:0006611;protein export from nucleus;0.0355727651611938!GO:0030833;regulation of actin filament polymerization;0.0358837811375995!GO:0032780;negative regulation of ATPase activity;0.0365152805722279!GO:0000228;nuclear chromosome;0.0367924245967802!GO:0007052;mitotic spindle organization and biogenesis;0.0369443689104497!GO:0032508;DNA duplex unwinding;0.0369617188599332!GO:0032392;DNA geometric change;0.0369617188599332!GO:0045445;myoblast differentiation;0.036970242125633!GO:0005861;troponin complex;0.0371663740579749!GO:0008094;DNA-dependent ATPase activity;0.0378455164576715!GO:0019752;carboxylic acid metabolic process;0.0382316575026985!GO:0004674;protein serine/threonine kinase activity;0.0382837445217361!GO:0045449;regulation of transcription;0.039055045017705!GO:0008097;5S rRNA binding;0.039055045017705!GO:0007021;tubulin folding;0.039055045017705!GO:0009112;nucleobase metabolic process;0.0393941110163068!GO:0043407;negative regulation of MAP kinase activity;0.0401989014645553!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0406435294581286!GO:0030508;thiol-disulfide exchange intermediate activity;0.0406435294581286!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0408756318333369!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0408756318333369!GO:0006082;organic acid metabolic process;0.041220927748042!GO:0030659;cytoplasmic vesicle membrane;0.0416845570860429!GO:0042585;germinal vesicle;0.0417222233199629!GO:0031902;late endosome membrane;0.0418723387486291!GO:0006289;nucleotide-excision repair;0.0421974340396282!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0422786217656975!GO:0008632;apoptotic program;0.042819256949829!GO:0005784;translocon complex;0.0432201282880016!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0432201282880016!GO:0055083;monovalent inorganic anion homeostasis;0.0432201282880016!GO:0055064;chloride ion homeostasis;0.0432201282880016!GO:0030644;cellular chloride ion homeostasis;0.0432201282880016!GO:0030145;manganese ion binding;0.0433040374375644!GO:0000776;kinetochore;0.0439740651159777!GO:0004860;protein kinase inhibitor activity;0.0442176723091701!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0447250855352727!GO:0006378;mRNA polyadenylation;0.0447346806912678!GO:0016741;transferase activity, transferring one-carbon groups;0.0458214878173574!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0459144300937542!GO:0006596;polyamine biosynthetic process;0.0459646134644798!GO:0007266;Rho protein signal transduction;0.0460412501865286!GO:0045098;type III intermediate filament;0.0467527360553508!GO:0006779;porphyrin biosynthetic process;0.0470309729392341!GO:0033014;tetrapyrrole biosynthetic process;0.0470309729392341!GO:0003923;GPI-anchor transamidase activity;0.0470309729392341!GO:0016255;attachment of GPI anchor to protein;0.0470309729392341!GO:0042765;GPI-anchor transamidase complex;0.0470309729392341!GO:0043241;protein complex disassembly;0.0475466898207406!GO:0031625;ubiquitin protein ligase binding;0.0475466898207406!GO:0030119;AP-type membrane coat adaptor complex;0.047750396431764!GO:0045045;secretory pathway;0.0479134289702793!GO:0006739;NADP metabolic process;0.0489267499643414!GO:0005100;Rho GTPase activator activity;0.0489726937039555
+|sample_id=11282
+|sample_note=
+|sample_sex=unknown
+|sample_species=Human (Homo sapiens)
+|sample_strain=
+|sample_tissue=skeletal muscle
+|top_motifs=MEF2{A,B,C,D}:2.71120577662;NHLH1,2:2.6135763734;MYBL2:2.20028654538;SRF:2.14806687976;TAL1_TCF{3,4,12}:2.13823023079;TFAP4:1.98962328922;MYOD1:1.65488468771;NR6A1:1.61673324613;ZNF384:1.59679251239;HOX{A4,D4}:1.58643716452;GLI1..3:1.51861037699;ZNF238:1.43069720472;SMAD1..7,9:1.42662806961;KLF4:1.3624111371;GTF2A1,2:1.34313666657;PAX5:1.34255662443;TEAD1:1.30670924888;SOX5:1.23873601385;RXR{A,B,G}:1.23235161671;NR5A1,2:1.23027101866;SPZ1:1.20965047554;ESR1:1.20785849355;TBP:1.19140257967;NR3C1:1.1663247599;HOX{A5,B5}:1.16446495292;TGIF1:1.16293455374;SOX17:1.15799252064;IKZF1:1.14636876916;RREB1:1.11682875635;MAZ:1.09960417352;NKX3-1:1.09669653907;EVI1:1.06652832202;RXRA_VDR{dimer}:1.05682836304;LMO2:1.0371290126;ZIC1..3:1.01411611067;GFI1B:1.01207920302;NKX6-1,2:1.01166525221;PATZ1:1.00322353158;GATA4:0.97054622586;LHX3,4:0.969247795679;TFCP2:0.959938526639;MZF1:0.950025240001;MAFB:0.941329083831;HAND1,2:0.933120668282;HSF1,2:0.925879602665;FOXL1:0.919761870032;GCM1,2:0.896919195441;NFIX:0.873206969009;ALX4:0.869704917593;TLX1..3_NFIC{dimer}:0.847306244678;EN1,2:0.839052373821;GTF2I:0.821670202257;UFEwm:0.786617654427;NFATC1..3:0.739227705113;ZNF148:0.733464370429;PRDM1:0.698612587067;YY1:0.640223176974;MYFfamily:0.623054263847;SOX2:0.621914824609;POU3F1..4:0.57831507768;TP53:0.573303180922;FOXM1:0.551463006522;PAX4:0.537330542431;TFAP2{A,C}:0.520983690162;TFAP2B:0.516428965653;ZNF143:0.50900766992;T:0.498456264019;PAX3,7:0.49622295814;NANOG{mouse}:0.478384843222;NKX2-3_NKX2-5:0.474680331037;MTE{core}:0.473359533525;NKX2-1,4:0.467495787394;HIC1:0.46523218423;DBP:0.452824692015;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.449763269384;HES1:0.432610544443;MED-1{core}:0.423808210426;TOPORS:0.406356057481;HMX1:0.402956906926;GFI1:0.382838543258;TBX4,5:0.360877484789;SOX{8,9,10}:0.32534489781;PAX1,9:0.31034089087;RBPJ:0.305451433926;NR1H4:0.269856725332;EGR1..3:0.265359832295;SP1:0.261117001019;HMGA1,2:0.242700226801;EBF1:0.234709216388;XCPE1{core}:0.22457422825;LEF1_TCF7_TCF7L1,2:0.207945766427;NFE2L2:0.189262437513;EP300:0.183789482079;HOX{A6,A7,B6,B7}:0.149322711683;NRF1:0.138343742177;IKZF2:0.137712412708;POU6F1:0.118381356573;PAX8:0.116895451341;REST:0.110978558512;CRX:0.0892830941168;E2F1..5:0.0886002527124;NFY{A,B,C}:0.0837418343607;CDC5L:0.0746562104171;DMAP1_NCOR{1,2}_SMARC:0.0726489496978;FOSL2:0.0614358670038;GZF1:0.0563687674964;ELK1,4_GABP{A,B1}:0.0553012741249;POU5F1:0.0363467480679;CUX2:0.0310570331574;FOXD3:0.0251200845813;RFX2..5_RFXANK_RFXAP:0.011982980989;ZNF423:0.00974159395744;NFIL3:0.00637994296536;STAT1,3:0.00414974679593;NKX3-2:-0.0265370088193;ADNP_IRX_SIX_ZHX:-0.037209496155;JUN:-0.0393840477352;HLF:-0.0512829409089;RUNX1..3:-0.0579487296809;STAT5{A,B}:-0.0682662826404;RFX1:-0.0701756848208;AIRE:-0.0784235894739;STAT2,4,6:-0.0795490719408;HIF1A:-0.0974831147858;FOXO1,3,4:-0.101436068453;PAX2:-0.106275405883;ZBTB6:-0.118780130963;AHR_ARNT_ARNT2:-0.139460845007;IRF1,2:-0.149635636588;ZFP161:-0.161165279796;FOXA2:-0.170409623413;SNAI1..3:-0.179400860774;ATF2:-0.182412366274;TEF:-0.192707936548;TFDP1:-0.204287133352;ESRRA:-0.205321789359;HNF1A:-0.205636720317;BACH2:-0.221070660555;FOS_FOS{B,L1}_JUN{B,D}:-0.238688202834;ATF6:-0.249611051054;NFE2L1:-0.26543266749;CDX1,2,4:-0.270825481235;MYB:-0.279581967219;OCT4_SOX2{dimer}:-0.284797287121;AR:-0.289269948063;NKX2-2,8:-0.295458095463;VSX1,2:-0.303514947583;CEBPA,B_DDIT3:-0.305472266366;PRRX1,2:-0.308412665024;FOXP3:-0.308563206757;IRF7:-0.310242399459;TLX2:-0.331537104591;bHLH_family:-0.374970221646;RORA:-0.39137105125;PAX6:-0.406650798823;FOXP1:-0.417000152014;PDX1:-0.419101303096;HNF4A_NR2F1,2:-0.424770537105;NFE2:-0.440061981297;NFKB1_REL_RELA:-0.448425584264;CREB1:-0.491215021963;XBP1:-0.495965317536;ATF4:-0.539091441671;PBX1:-0.571982256991;BPTF:-0.583978697616;SPI1:-0.59506731194;PITX1..3:-0.607964888656;MTF1:-0.608544536809;ALX1:-0.61263084638;POU1F1:-0.632157752969;ELF1,2,4:-0.649687475136;FOX{F1,F2,J1}:-0.649933288837;HBP1_HMGB_SSRP1_UBTF:-0.650384654273;SREBF1,2:-0.656214728787;ONECUT1,2:-0.663857266534;FOXQ1:-0.716156072143;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.736060334994;SPIB:-0.747288771959;PPARG:-0.754454868085;NANOG:-0.765870742337;BREu{core}:-0.767512876459;ETS1,2:-0.816608798673;GATA6:-0.837992584154;FOXN1:-0.851422892649;HOXA9_MEIS1:-0.908891184194;FOX{D1,D2}:-0.919394379143;ZEB1:-0.928612605697;ATF5_CREB3:-0.99273986523;POU2F1..3:-1.00782637758;FOX{I1,J2}:-1.19060989615;ZBTB16:-1.2543246159;ARID5B:-1.26478216539
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11282-116I4;search_select_hide=table117:FF:11282-116I4
 }}

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FF:11282-116I4: Difference between revisions

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Latest revision as of 16:30, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0