FF:11282-116I4: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004973 | |DRA_sample_Accession=CAGE@SAMD00004973 | ||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004973 | |||
|HumanCAGEScanFiles=NCig10050;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.NCig10050.11282-116I4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.NCig10050.11282-116I4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.NCig10050.11282-116I4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.NCig10050.11282-116I4.hg19.GCTATA.pairs.bed.gz | |HumanCAGEScanFiles=NCig10050;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.NCig10050.11282-116I4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.NCig10050.11282-116I4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.NCig10050.11282-116I4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.NCig10050.11282-116I4.hg19.GCTATA.pairs.bed.gz | ||
|accession_numbers=CAGE;DRX008461;DRR009333;DRZ000758;DRZ002143 | |accession_numbers=CAGE;DRX008461;DRR009333;DRZ000758;DRZ002143;DRZ012108;DRZ013493 | ||
|accession_numbers_RNASeq=sRNA-Seq;DRX037047;DRR041413;DRZ007055 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188 | ||
Line 66: | Line 68: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10004,,, | |profile_srnaseq=SRhi10004,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |refex=http://refex.dbcls.jp/genelist.php?lang | ||
|repeat_enrich_byfamily=0,0,0,0,0,0.78985262985064,0,0.0500604919608165,0,-0.206193221154561,-0.263883232866197,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.116282354926937,0,0.13826770559353,0,0,0,-0.0609172408465664,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.0370406554214911,0,-0.189504136031258,0,0,0,0,0,0,0,0,-0.0056946934020888,0,0,0,0.0370406554214911,0,0.0370406554214911,0.102809556581045,-0.0969923612426051,0,0,0.0349571013953984,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0370406554214911,0.0711689110389527,0.0185203277107455,0,0,0.136831753840418,0.0616417037925133,0.0185203277107455,0.444144877224401,0,0.0370406554214911,-0.0268664401987537,-0.119956873090149,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0204107906016815,0.102809556581045,0,0,-0.133148912944135,-0.145865846607338,0,0,0,0,0,0 | |repeat_enrich_byfamily=0,0,0,0,0,0.78985262985064,0,0.0500604919608165,0,-0.206193221154561,-0.263883232866197,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.116282354926937,0,0.13826770559353,0,0,0,-0.0609172408465664,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.0370406554214911,0,-0.189504136031258,0,0,0,0,0,0,0,0,-0.0056946934020888,0,0,0,0.0370406554214911,0,0.0370406554214911,0.102809556581045,-0.0969923612426051,0,0,0.0349571013953984,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0370406554214911,0.0711689110389527,0.0185203277107455,0,0,0.136831753840418,0.0616417037925133,0.0185203277107455,0.444144877224401,0,0.0370406554214911,-0.0268664401987537,-0.119956873090149,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0204107906016815,0.102809556581045,0,0,-0.133148912944135,-0.145865846607338,0,0,0,0,0,0 | ||
|repeat_enrich_byname=0,0,0,0.0370406554214911,-0.0268664401987537,0,0.0370406554214911,0,0,0,0,0.0370406554214911,0,0.444144877224401,0,0,0.153107721445982,0.0185203277107455,0.379807227131635,-0.106474487101981,0.0185203277107455,0,0.027182990233839,0,0,0,0,0.0370406554214911,0,0.0370406554214911,0.0370406554214911,0,0.256504573187381,0,0.90013976714092,0.0514047782905225,0,0.0409036051511167,0,0.0579379654505418,-0.119592456553966,0,0.080060717628127,-0.0313036056558771,0,0,0,0,0.272380042138156,0,-0.0497105727547879,-0.0115512572844646,0.392876571088564,0.39143368368142,0.0154564142577707,0,0,0.0185203277107455,-0.0886624068148841,0.12214839697007,0,0,0.120208879153616,0.0475665682055215,0,0,0.933674831066715,0.210378522047203,-0.111519453767087,0.311221832329921,0,0.0352443151727874,0,0,0,0,0,0,0,0,0,0,0,0.393032031784081,0.0576358434609772,0.0185203277107455,0.0711689110389527,0.444144877224401,0,-0.125793862216322,0.0439603994007482,0.0095657968002742,-0.139717386908282,0.0408634459047459,0.0178947427277714,0.374107401910771,0.024666057385848,0.155442646522448,0.191574697542998,0.247093427542902,0.144207707863341,0.149121270922412,0.0203968024973553,0.0711689110389527,-0.103873154298491,0.243293428171444,-0.0344809359966618,-0.050534894669245,0.0677112175943807,0.355859532007506,-0.231360625708481,0.0370406554214911,0,0.0370406554214911,0.00546980937245212,0.00829243572316515,0.0370406554214911,0.0185228430784995,-0.0078379903544362,0.039601636099212,0.0699753763286495,0.0828185778902535,-0.175937415708131,0.22347236228737,0.184356554045865,0.0370406554214911,0.752937977614413,0.00429009311908413,0.0370406554214911,0,-0.014248341140494,-0.00237826178895617,-0.157993799646318,0.0189339956158415,0,0.117535513267073,0.0514047782905225,0.205857175716143,0.0489583659072241,0.0711689110389527,0,-0.00359018233789421,0.0370406554214911,0,0,0.0321366680493831,0.102809556581045,-0.278648070535662,-0.329113620982964,-0.0224770395083422,0,-0.00165547149693835,0.0171604024698472,-0.0971427819868135,0,0.0609617905506443,-0.0680016454171646,-0.0215387411742313,-0.0696158097043346,0,0.0233350258552595,0.0538207493080087,-0.0228653791122218,0.0862427521635356,-0.0584468268118252,-0.00836987778031317,-0.211898134477499,0.136831753840418,0.0370085386179769,0.196776627849115,-0.0510861770537966,0,-0.0296513046347365,-0.159036487505397,0.0391951499028937,0.0489771821274868,0.185879774344441,-0.0764055839276219,0,-0.276255810738894,0.0340733187202914,-0.256184299648165,0.110092262049507,-0.205720605532401,-0.513933926467972,0.00057529319259697,0.0698378375562373,0.484114005866757,0.0370406554214911,-0.0664767453548358,0.00204871002443823,0.0370406554214911,0.370094560781488,0.226048340517061,-0.140481516825636,0.0177985766250815,0,0.0951341612057484,0,0.0711689110389527,0.0239337418765678,-0.0495962634199473,0.0370406554214911,0.0130328647590677,-0.0772305917141611,-0.0722437186960595,-0.115971073434934,0,0,0.208193107890919,0,0.0711689110389527,0.242518376425429,0.0711689110389527,1.03325375355355,0.388466665455704,0.0279666220145478,0.300135645950794,0,0,0.00835200837926578,0,0.298955264507069,0,0,0.092947238516338,0,0,0.241988730905491,0.210378522047203,0,0,0,0,0,0,0,0,-0.280636590089012,0.177138992282787,0,0.102809556581045,0,0.0711689110389527,0,0,0,0,0.0232745732233623,0.632880782823029,0.682368088228904,0.105268683777858,0.0368985702865151,0.0185203277107455,0,0,0,0.214288517170827,-0.100427005513679,0.0370406554214911,0.000438022110863689,0.0711689110389527,0.0185203277107455,0,0,-0.0491003343677203,0,0,0.0185203277107455,0.0185203277107455,0.045079099527381,-0.129306014631101,0,0,0,-0.27695440160179,0,0,0.0370406554214911,0.0370406554214911,0.0098195409290458,0,0.0659588605465925,0.108735338518931,0,0.0453498877693859,0.214941240746709,0,-0.146479667101313,0.275821712347394,0.406511238107939,0,0.368376251967562,0.0725868567533298,0,0.0199038551258537,-0.0560739681196989,0,0.0370406554214911,0.0590332170353505,0,0,0,0,0,0,-0.143145601360803,0.0355844555194764,0,0.0267705376608574,0,0,0.185879774344441,0,0.0370406554214911,0,0,0,-0.0785914601045232,-0.0210551456195577,0.076921078622655,0,0,0.0370406554214911,0,0,0,-0.00558569536815755,0.0129340361586465,0.0185203277107455,0,0.0370406554214911,0,0,0,0,0,0.143062219528128,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.527766465732393,0,0,-0.206193221154561,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0625606883089937,-0.265353569373762,0,0.0370406554214911,0,0,0,0,0,-0.203664387167138,0,0,0.0370406554214911,0,0.0460316122539582,0,0,0,0.105582137258046,0,0.0500604919608165,0.78985262985064,0,0.0370406554214911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0514047782905225,0,0,0.00713367136864865,0.265740067647291,0.0467822662453693,0.0815202296941986,-0.165790639442251,0,0,0.124725324481486,0,0,0,0,0,0,0.0348099402757207,0,0,0,0,0,0,0,0.0185203277107455,0,0,0,0,0,0,0,0,0,0,0.102809556581045,0,0,0,0,0,0.0185203277107455,-0.0163377160943429,0,0,0,0,0.185879774344441,0,0,-0.0609172408465664,0,0,-0.0208638987615734,0,0,0,0,0.00804344521072334,0.0105265605848893,-0.0249719499126685,0.396484966402735,0.0452611521438193,0,0,0.928328807702114,0.0117647918217927,0.0370406554214911,0,0.0650584480071252,0.102809556581045,0.065523341189594,0.0370406554214911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.116282354926937,0,0,0,0,0,0,0,0,0,0,0,0,0.0661503643042475,0,0,0,0,0,0,0,0,0,0,0,0,0.0711689110389527,0,0.0370406554214911,0.0355844555194764,0,0,0,0,0,0.0370406554214911,-0.015491035564671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.0807855010485483,0,0,0,0,0,0,0.0370406554214911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.273128138341899,0,0,0,0,0,0,0,0,0.0370406554214911,0,0,0,0,-0.0482220752390542,0,-0.047335976808536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711689110389527,-0.418203313907217,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0.102809556581045,0,0,0,0,0,0,0,0,0,0,-0.216569952867014,0,0,-0.189504136031258,0,0,0,0,0,0,0,0,0,0,0,0,0.00984873188882631,0,0,0,0,0,0,0,0,0,0,-0.0113893868041776,0,0,0,0,0,0,0,0,0.750482618256122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0185203277107455,-0.147470643773807,-0.145865846607338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0185203277107455,0.0355844555194764,0,0,0,0,0,0,0,0,0,0,0,0,0.0305827221975424,0.0185203277107455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0058875331468006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0185203277107455,0,0,0,0,0,0.0370406554214911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0185203277107455,0,0,0,0,0,0,0,0,-0.220109822018058,0,0,0,0,0,0.0711689110389527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0408215812033631,0,0,0,0.13826770559353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0185203277107455,0,0,0,0.0355844555194764,0.026951711697274,0,0,0,0,0,0,0,-0.0515270859580482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0185203277107455,0,0,0,0.0370406554214911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235550816987754,0,0,0,-0.042701343243487,0,0,0,0,0,0,0,0,0,0,0.0370406554214911,0,0,0,0,0,0,0,0.0349571013953984,0,0.0185203277107455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00146679576893608,0,0,0,0,0,0,0,0,0,0,-0.0227297638170617,0.0355844555194764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00103971096491584,0,0,-0.0422874684771159,0,-0.127786039420021,0.0475917925456366,0,0,0,0,0,0.121725548899289,0,0,0,0,0,0,0,0,0,0,-0.0400762477245316,0,0,0.0087698548618211,0,0,0,0,0,0,0.102809556581045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.243031439901475,0,-0.0967365778526975,-0.0455782218951749,0,0.0370406554214911,-0.21431887862335,0,0,-0.0477396614475454,0,0,0.121530225203251,-0.243904534260815,0.0370406554214911,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0773080218065147,0.315631259440879,0.0370406554214911,0.0711689110389527,0.0459506104184458,-0.198306724555616,0.0370406554214911,-0.145267485302139,0.0370406554214911,0,-0.150348491328587,0,0,0,0.0068501492074581 | |repeat_enrich_byname=0,0,0,0.0370406554214911,-0.0268664401987537,0,0.0370406554214911,0,0,0,0,0.0370406554214911,0,0.444144877224401,0,0,0.153107721445982,0.0185203277107455,0.379807227131635,-0.106474487101981,0.0185203277107455,0,0.027182990233839,0,0,0,0,0.0370406554214911,0,0.0370406554214911,0.0370406554214911,0,0.256504573187381,0,0.90013976714092,0.0514047782905225,0,0.0409036051511167,0,0.0579379654505418,-0.119592456553966,0,0.080060717628127,-0.0313036056558771,0,0,0,0,0.272380042138156,0,-0.0497105727547879,-0.0115512572844646,0.392876571088564,0.39143368368142,0.0154564142577707,0,0,0.0185203277107455,-0.0886624068148841,0.12214839697007,0,0,0.120208879153616,0.0475665682055215,0,0,0.933674831066715,0.210378522047203,-0.111519453767087,0.311221832329921,0,0.0352443151727874,0,0,0,0,0,0,0,0,0,0,0,0.393032031784081,0.0576358434609772,0.0185203277107455,0.0711689110389527,0.444144877224401,0,-0.125793862216322,0.0439603994007482,0.0095657968002742,-0.139717386908282,0.0408634459047459,0.0178947427277714,0.374107401910771,0.024666057385848,0.155442646522448,0.191574697542998,0.247093427542902,0.144207707863341,0.149121270922412,0.0203968024973553,0.0711689110389527,-0.103873154298491,0.243293428171444,-0.0344809359966618,-0.050534894669245,0.0677112175943807,0.355859532007506,-0.231360625708481,0.0370406554214911,0,0.0370406554214911,0.00546980937245212,0.00829243572316515,0.0370406554214911,0.0185228430784995,-0.0078379903544362,0.039601636099212,0.0699753763286495,0.0828185778902535,-0.175937415708131,0.22347236228737,0.184356554045865,0.0370406554214911,0.752937977614413,0.00429009311908413,0.0370406554214911,0,-0.014248341140494,-0.00237826178895617,-0.157993799646318,0.0189339956158415,0,0.117535513267073,0.0514047782905225,0.205857175716143,0.0489583659072241,0.0711689110389527,0,-0.00359018233789421,0.0370406554214911,0,0,0.0321366680493831,0.102809556581045,-0.278648070535662,-0.329113620982964,-0.0224770395083422,0,-0.00165547149693835,0.0171604024698472,-0.0971427819868135,0,0.0609617905506443,-0.0680016454171646,-0.0215387411742313,-0.0696158097043346,0,0.0233350258552595,0.0538207493080087,-0.0228653791122218,0.0862427521635356,-0.0584468268118252,-0.00836987778031317,-0.211898134477499,0.136831753840418,0.0370085386179769,0.196776627849115,-0.0510861770537966,0,-0.0296513046347365,-0.159036487505397,0.0391951499028937,0.0489771821274868,0.185879774344441,-0.0764055839276219,0,-0.276255810738894,0.0340733187202914,-0.256184299648165,0.110092262049507,-0.205720605532401,-0.513933926467972,0.00057529319259697,0.0698378375562373,0.484114005866757,0.0370406554214911,-0.0664767453548358,0.00204871002443823,0.0370406554214911,0.370094560781488,0.226048340517061,-0.140481516825636,0.0177985766250815,0,0.0951341612057484,0,0.0711689110389527,0.0239337418765678,-0.0495962634199473,0.0370406554214911,0.0130328647590677,-0.0772305917141611,-0.0722437186960595,-0.115971073434934,0,0,0.208193107890919,0,0.0711689110389527,0.242518376425429,0.0711689110389527,1.03325375355355,0.388466665455704,0.0279666220145478,0.300135645950794,0,0,0.00835200837926578,0,0.298955264507069,0,0,0.092947238516338,0,0,0.241988730905491,0.210378522047203,0,0,0,0,0,0,0,0,-0.280636590089012,0.177138992282787,0,0.102809556581045,0,0.0711689110389527,0,0,0,0,0.0232745732233623,0.632880782823029,0.682368088228904,0.105268683777858,0.0368985702865151,0.0185203277107455,0,0,0,0.214288517170827,-0.100427005513679,0.0370406554214911,0.000438022110863689,0.0711689110389527,0.0185203277107455,0,0,-0.0491003343677203,0,0,0.0185203277107455,0.0185203277107455,0.045079099527381,-0.129306014631101,0,0,0,-0.27695440160179,0,0,0.0370406554214911,0.0370406554214911,0.0098195409290458,0,0.0659588605465925,0.108735338518931,0,0.0453498877693859,0.214941240746709,0,-0.146479667101313,0.275821712347394,0.406511238107939,0,0.368376251967562,0.0725868567533298,0,0.0199038551258537,-0.0560739681196989,0,0.0370406554214911,0.0590332170353505,0,0,0,0,0,0,-0.143145601360803,0.0355844555194764,0,0.0267705376608574,0,0,0.185879774344441,0,0.0370406554214911,0,0,0,-0.0785914601045232,-0.0210551456195577,0.076921078622655,0,0,0.0370406554214911,0,0,0,-0.00558569536815755,0.0129340361586465,0.0185203277107455,0,0.0370406554214911,0,0,0,0,0,0.143062219528128,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.527766465732393,0,0,-0.206193221154561,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0625606883089937,-0.265353569373762,0,0.0370406554214911,0,0,0,0,0,-0.203664387167138,0,0,0.0370406554214911,0,0.0460316122539582,0,0,0,0.105582137258046,0,0.0500604919608165,0.78985262985064,0,0.0370406554214911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0514047782905225,0,0,0.00713367136864865,0.265740067647291,0.0467822662453693,0.0815202296941986,-0.165790639442251,0,0,0.124725324481486,0,0,0,0,0,0,0.0348099402757207,0,0,0,0,0,0,0,0.0185203277107455,0,0,0,0,0,0,0,0,0,0,0.102809556581045,0,0,0,0,0,0.0185203277107455,-0.0163377160943429,0,0,0,0,0.185879774344441,0,0,-0.0609172408465664,0,0,-0.0208638987615734,0,0,0,0,0.00804344521072334,0.0105265605848893,-0.0249719499126685,0.396484966402735,0.0452611521438193,0,0,0.928328807702114,0.0117647918217927,0.0370406554214911,0,0.0650584480071252,0.102809556581045,0.065523341189594,0.0370406554214911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.116282354926937,0,0,0,0,0,0,0,0,0,0,0,0,0.0661503643042475,0,0,0,0,0,0,0,0,0,0,0,0,0.0711689110389527,0,0.0370406554214911,0.0355844555194764,0,0,0,0,0,0.0370406554214911,-0.015491035564671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.0807855010485483,0,0,0,0,0,0,0.0370406554214911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.273128138341899,0,0,0,0,0,0,0,0,0.0370406554214911,0,0,0,0,-0.0482220752390542,0,-0.047335976808536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711689110389527,-0.418203313907217,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0.102809556581045,0,0,0,0,0,0,0,0,0,0,-0.216569952867014,0,0,-0.189504136031258,0,0,0,0,0,0,0,0,0,0,0,0,0.00984873188882631,0,0,0,0,0,0,0,0,0,0,-0.0113893868041776,0,0,0,0,0,0,0,0,0.750482618256122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0185203277107455,-0.147470643773807,-0.145865846607338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0185203277107455,0.0355844555194764,0,0,0,0,0,0,0,0,0,0,0,0,0.0305827221975424,0.0185203277107455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0058875331468006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0185203277107455,0,0,0,0,0,0.0370406554214911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0185203277107455,0,0,0,0,0,0,0,0,-0.220109822018058,0,0,0,0,0,0.0711689110389527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0408215812033631,0,0,0,0.13826770559353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0185203277107455,0,0,0,0.0355844555194764,0.026951711697274,0,0,0,0,0,0,0,-0.0515270859580482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0185203277107455,0,0,0,0.0370406554214911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235550816987754,0,0,0,-0.042701343243487,0,0,0,0,0,0,0,0,0,0,0.0370406554214911,0,0,0,0,0,0,0,0.0349571013953984,0,0.0185203277107455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00146679576893608,0,0,0,0,0,0,0,0,0,0,-0.0227297638170617,0.0355844555194764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00103971096491584,0,0,-0.0422874684771159,0,-0.127786039420021,0.0475917925456366,0,0,0,0,0,0.121725548899289,0,0,0,0,0,0,0,0,0,0,-0.0400762477245316,0,0,0.0087698548618211,0,0,0,0,0,0,0.102809556581045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.243031439901475,0,-0.0967365778526975,-0.0455782218951749,0,0.0370406554214911,-0.21431887862335,0,0,-0.0477396614475454,0,0,0.121530225203251,-0.243904534260815,0.0370406554214911,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0773080218065147,0.315631259440879,0.0370406554214911,0.0711689110389527,0.0459506104184458,-0.198306724555616,0.0370406554214911,-0.145267485302139,0.0370406554214911,0,-0.150348491328587,0,0,0,0.0068501492074581 | ||
Line 81: | Line 83: | ||
|rna_tube_id=116I4 | |rna_tube_id=116I4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10004.GTAGAG | |||
|sample_age=embryo 22week | |sample_age=embryo 22week | ||
|sample_category=primary cells | |sample_category=primary cells | ||
Line 104: | Line 107: | ||
|top_motifs=MEF2{A,B,C,D}:2.71120577662;NHLH1,2:2.6135763734;MYBL2:2.20028654538;SRF:2.14806687976;TAL1_TCF{3,4,12}:2.13823023079;TFAP4:1.98962328922;MYOD1:1.65488468771;NR6A1:1.61673324613;ZNF384:1.59679251239;HOX{A4,D4}:1.58643716452;GLI1..3:1.51861037699;ZNF238:1.43069720472;SMAD1..7,9:1.42662806961;KLF4:1.3624111371;GTF2A1,2:1.34313666657;PAX5:1.34255662443;TEAD1:1.30670924888;SOX5:1.23873601385;RXR{A,B,G}:1.23235161671;NR5A1,2:1.23027101866;SPZ1:1.20965047554;ESR1:1.20785849355;TBP:1.19140257967;NR3C1:1.1663247599;HOX{A5,B5}:1.16446495292;TGIF1:1.16293455374;SOX17:1.15799252064;IKZF1:1.14636876916;RREB1:1.11682875635;MAZ:1.09960417352;NKX3-1:1.09669653907;EVI1:1.06652832202;RXRA_VDR{dimer}:1.05682836304;LMO2:1.0371290126;ZIC1..3:1.01411611067;GFI1B:1.01207920302;NKX6-1,2:1.01166525221;PATZ1:1.00322353158;GATA4:0.97054622586;LHX3,4:0.969247795679;TFCP2:0.959938526639;MZF1:0.950025240001;MAFB:0.941329083831;HAND1,2:0.933120668282;HSF1,2:0.925879602665;FOXL1:0.919761870032;GCM1,2:0.896919195441;NFIX:0.873206969009;ALX4:0.869704917593;TLX1..3_NFIC{dimer}:0.847306244678;EN1,2:0.839052373821;GTF2I:0.821670202257;UFEwm:0.786617654427;NFATC1..3:0.739227705113;ZNF148:0.733464370429;PRDM1:0.698612587067;YY1:0.640223176974;MYFfamily:0.623054263847;SOX2:0.621914824609;POU3F1..4:0.57831507768;TP53:0.573303180922;FOXM1:0.551463006522;PAX4:0.537330542431;TFAP2{A,C}:0.520983690162;TFAP2B:0.516428965653;ZNF143:0.50900766992;T:0.498456264019;PAX3,7:0.49622295814;NANOG{mouse}:0.478384843222;NKX2-3_NKX2-5:0.474680331037;MTE{core}:0.473359533525;NKX2-1,4:0.467495787394;HIC1:0.46523218423;DBP:0.452824692015;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.449763269384;HES1:0.432610544443;MED-1{core}:0.423808210426;TOPORS:0.406356057481;HMX1:0.402956906926;GFI1:0.382838543258;TBX4,5:0.360877484789;SOX{8,9,10}:0.32534489781;PAX1,9:0.31034089087;RBPJ:0.305451433926;NR1H4:0.269856725332;EGR1..3:0.265359832295;SP1:0.261117001019;HMGA1,2:0.242700226801;EBF1:0.234709216388;XCPE1{core}:0.22457422825;LEF1_TCF7_TCF7L1,2:0.207945766427;NFE2L2:0.189262437513;EP300:0.183789482079;HOX{A6,A7,B6,B7}:0.149322711683;NRF1:0.138343742177;IKZF2:0.137712412708;POU6F1:0.118381356573;PAX8:0.116895451341;REST:0.110978558512;CRX:0.0892830941168;E2F1..5:0.0886002527124;NFY{A,B,C}:0.0837418343607;CDC5L:0.0746562104171;DMAP1_NCOR{1,2}_SMARC:0.0726489496978;FOSL2:0.0614358670038;GZF1:0.0563687674964;ELK1,4_GABP{A,B1}:0.0553012741249;POU5F1:0.0363467480679;CUX2:0.0310570331574;FOXD3:0.0251200845813;RFX2..5_RFXANK_RFXAP:0.011982980989;ZNF423:0.00974159395744;NFIL3:0.00637994296536;STAT1,3:0.00414974679593;NKX3-2:-0.0265370088193;ADNP_IRX_SIX_ZHX:-0.037209496155;JUN:-0.0393840477352;HLF:-0.0512829409089;RUNX1..3:-0.0579487296809;STAT5{A,B}:-0.0682662826404;RFX1:-0.0701756848208;AIRE:-0.0784235894739;STAT2,4,6:-0.0795490719408;HIF1A:-0.0974831147858;FOXO1,3,4:-0.101436068453;PAX2:-0.106275405883;ZBTB6:-0.118780130963;AHR_ARNT_ARNT2:-0.139460845007;IRF1,2:-0.149635636588;ZFP161:-0.161165279796;FOXA2:-0.170409623413;SNAI1..3:-0.179400860774;ATF2:-0.182412366274;TEF:-0.192707936548;TFDP1:-0.204287133352;ESRRA:-0.205321789359;HNF1A:-0.205636720317;BACH2:-0.221070660555;FOS_FOS{B,L1}_JUN{B,D}:-0.238688202834;ATF6:-0.249611051054;NFE2L1:-0.26543266749;CDX1,2,4:-0.270825481235;MYB:-0.279581967219;OCT4_SOX2{dimer}:-0.284797287121;AR:-0.289269948063;NKX2-2,8:-0.295458095463;VSX1,2:-0.303514947583;CEBPA,B_DDIT3:-0.305472266366;PRRX1,2:-0.308412665024;FOXP3:-0.308563206757;IRF7:-0.310242399459;TLX2:-0.331537104591;bHLH_family:-0.374970221646;RORA:-0.39137105125;PAX6:-0.406650798823;FOXP1:-0.417000152014;PDX1:-0.419101303096;HNF4A_NR2F1,2:-0.424770537105;NFE2:-0.440061981297;NFKB1_REL_RELA:-0.448425584264;CREB1:-0.491215021963;XBP1:-0.495965317536;ATF4:-0.539091441671;PBX1:-0.571982256991;BPTF:-0.583978697616;SPI1:-0.59506731194;PITX1..3:-0.607964888656;MTF1:-0.608544536809;ALX1:-0.61263084638;POU1F1:-0.632157752969;ELF1,2,4:-0.649687475136;FOX{F1,F2,J1}:-0.649933288837;HBP1_HMGB_SSRP1_UBTF:-0.650384654273;SREBF1,2:-0.656214728787;ONECUT1,2:-0.663857266534;FOXQ1:-0.716156072143;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.736060334994;SPIB:-0.747288771959;PPARG:-0.754454868085;NANOG:-0.765870742337;BREu{core}:-0.767512876459;ETS1,2:-0.816608798673;GATA6:-0.837992584154;FOXN1:-0.851422892649;HOXA9_MEIS1:-0.908891184194;FOX{D1,D2}:-0.919394379143;ZEB1:-0.928612605697;ATF5_CREB3:-0.99273986523;POU2F1..3:-1.00782637758;FOX{I1,J2}:-1.19060989615;ZBTB16:-1.2543246159;ARID5B:-1.26478216539 | |top_motifs=MEF2{A,B,C,D}:2.71120577662;NHLH1,2:2.6135763734;MYBL2:2.20028654538;SRF:2.14806687976;TAL1_TCF{3,4,12}:2.13823023079;TFAP4:1.98962328922;MYOD1:1.65488468771;NR6A1:1.61673324613;ZNF384:1.59679251239;HOX{A4,D4}:1.58643716452;GLI1..3:1.51861037699;ZNF238:1.43069720472;SMAD1..7,9:1.42662806961;KLF4:1.3624111371;GTF2A1,2:1.34313666657;PAX5:1.34255662443;TEAD1:1.30670924888;SOX5:1.23873601385;RXR{A,B,G}:1.23235161671;NR5A1,2:1.23027101866;SPZ1:1.20965047554;ESR1:1.20785849355;TBP:1.19140257967;NR3C1:1.1663247599;HOX{A5,B5}:1.16446495292;TGIF1:1.16293455374;SOX17:1.15799252064;IKZF1:1.14636876916;RREB1:1.11682875635;MAZ:1.09960417352;NKX3-1:1.09669653907;EVI1:1.06652832202;RXRA_VDR{dimer}:1.05682836304;LMO2:1.0371290126;ZIC1..3:1.01411611067;GFI1B:1.01207920302;NKX6-1,2:1.01166525221;PATZ1:1.00322353158;GATA4:0.97054622586;LHX3,4:0.969247795679;TFCP2:0.959938526639;MZF1:0.950025240001;MAFB:0.941329083831;HAND1,2:0.933120668282;HSF1,2:0.925879602665;FOXL1:0.919761870032;GCM1,2:0.896919195441;NFIX:0.873206969009;ALX4:0.869704917593;TLX1..3_NFIC{dimer}:0.847306244678;EN1,2:0.839052373821;GTF2I:0.821670202257;UFEwm:0.786617654427;NFATC1..3:0.739227705113;ZNF148:0.733464370429;PRDM1:0.698612587067;YY1:0.640223176974;MYFfamily:0.623054263847;SOX2:0.621914824609;POU3F1..4:0.57831507768;TP53:0.573303180922;FOXM1:0.551463006522;PAX4:0.537330542431;TFAP2{A,C}:0.520983690162;TFAP2B:0.516428965653;ZNF143:0.50900766992;T:0.498456264019;PAX3,7:0.49622295814;NANOG{mouse}:0.478384843222;NKX2-3_NKX2-5:0.474680331037;MTE{core}:0.473359533525;NKX2-1,4:0.467495787394;HIC1:0.46523218423;DBP:0.452824692015;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.449763269384;HES1:0.432610544443;MED-1{core}:0.423808210426;TOPORS:0.406356057481;HMX1:0.402956906926;GFI1:0.382838543258;TBX4,5:0.360877484789;SOX{8,9,10}:0.32534489781;PAX1,9:0.31034089087;RBPJ:0.305451433926;NR1H4:0.269856725332;EGR1..3:0.265359832295;SP1:0.261117001019;HMGA1,2:0.242700226801;EBF1:0.234709216388;XCPE1{core}:0.22457422825;LEF1_TCF7_TCF7L1,2:0.207945766427;NFE2L2:0.189262437513;EP300:0.183789482079;HOX{A6,A7,B6,B7}:0.149322711683;NRF1:0.138343742177;IKZF2:0.137712412708;POU6F1:0.118381356573;PAX8:0.116895451341;REST:0.110978558512;CRX:0.0892830941168;E2F1..5:0.0886002527124;NFY{A,B,C}:0.0837418343607;CDC5L:0.0746562104171;DMAP1_NCOR{1,2}_SMARC:0.0726489496978;FOSL2:0.0614358670038;GZF1:0.0563687674964;ELK1,4_GABP{A,B1}:0.0553012741249;POU5F1:0.0363467480679;CUX2:0.0310570331574;FOXD3:0.0251200845813;RFX2..5_RFXANK_RFXAP:0.011982980989;ZNF423:0.00974159395744;NFIL3:0.00637994296536;STAT1,3:0.00414974679593;NKX3-2:-0.0265370088193;ADNP_IRX_SIX_ZHX:-0.037209496155;JUN:-0.0393840477352;HLF:-0.0512829409089;RUNX1..3:-0.0579487296809;STAT5{A,B}:-0.0682662826404;RFX1:-0.0701756848208;AIRE:-0.0784235894739;STAT2,4,6:-0.0795490719408;HIF1A:-0.0974831147858;FOXO1,3,4:-0.101436068453;PAX2:-0.106275405883;ZBTB6:-0.118780130963;AHR_ARNT_ARNT2:-0.139460845007;IRF1,2:-0.149635636588;ZFP161:-0.161165279796;FOXA2:-0.170409623413;SNAI1..3:-0.179400860774;ATF2:-0.182412366274;TEF:-0.192707936548;TFDP1:-0.204287133352;ESRRA:-0.205321789359;HNF1A:-0.205636720317;BACH2:-0.221070660555;FOS_FOS{B,L1}_JUN{B,D}:-0.238688202834;ATF6:-0.249611051054;NFE2L1:-0.26543266749;CDX1,2,4:-0.270825481235;MYB:-0.279581967219;OCT4_SOX2{dimer}:-0.284797287121;AR:-0.289269948063;NKX2-2,8:-0.295458095463;VSX1,2:-0.303514947583;CEBPA,B_DDIT3:-0.305472266366;PRRX1,2:-0.308412665024;FOXP3:-0.308563206757;IRF7:-0.310242399459;TLX2:-0.331537104591;bHLH_family:-0.374970221646;RORA:-0.39137105125;PAX6:-0.406650798823;FOXP1:-0.417000152014;PDX1:-0.419101303096;HNF4A_NR2F1,2:-0.424770537105;NFE2:-0.440061981297;NFKB1_REL_RELA:-0.448425584264;CREB1:-0.491215021963;XBP1:-0.495965317536;ATF4:-0.539091441671;PBX1:-0.571982256991;BPTF:-0.583978697616;SPI1:-0.59506731194;PITX1..3:-0.607964888656;MTF1:-0.608544536809;ALX1:-0.61263084638;POU1F1:-0.632157752969;ELF1,2,4:-0.649687475136;FOX{F1,F2,J1}:-0.649933288837;HBP1_HMGB_SSRP1_UBTF:-0.650384654273;SREBF1,2:-0.656214728787;ONECUT1,2:-0.663857266534;FOXQ1:-0.716156072143;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.736060334994;SPIB:-0.747288771959;PPARG:-0.754454868085;NANOG:-0.765870742337;BREu{core}:-0.767512876459;ETS1,2:-0.816608798673;GATA6:-0.837992584154;FOXN1:-0.851422892649;HOXA9_MEIS1:-0.908891184194;FOX{D1,D2}:-0.919394379143;ZEB1:-0.928612605697;ATF5_CREB3:-0.99273986523;POU2F1..3:-1.00782637758;FOX{I1,J2}:-1.19060989615;ZBTB16:-1.2543246159;ARID5B:-1.26478216539 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11282-116I4;search_select_hide=table117:FF:11282-116I4 | |||
}} | }} |
Latest revision as of 16:30, 3 June 2020
Name: | Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1 |
---|---|
Species: | Human (Homo sapiens) |
Library ID: | CNhs11084 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Download raw sequence, BAM & CTSS | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11084
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11084
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.397 |
10 | 10 | 0.0288 |
100 | 100 | 0.946 |
101 | 101 | 0.651 |
102 | 102 | 0.616 |
103 | 103 | 0.195 |
104 | 104 | 0.374 |
105 | 105 | 0.819 |
106 | 106 | 0.232 |
107 | 107 | 0.252 |
108 | 108 | 0.437 |
109 | 109 | 0.32 |
11 | 11 | 0.794 |
110 | 110 | 0.705 |
111 | 111 | 0.669 |
112 | 112 | 0.225 |
113 | 113 | 6.19584e-5 |
114 | 114 | 0.576 |
115 | 115 | 0.982 |
116 | 116 | 0.234 |
117 | 117 | 0.154 |
118 | 118 | 0.0795 |
119 | 119 | 0.863 |
12 | 12 | 0.645 |
120 | 120 | 0.358 |
121 | 121 | 0.62 |
122 | 122 | 0.0483 |
123 | 123 | 1.31115e-4 |
124 | 124 | 0.108 |
125 | 125 | 0.321 |
126 | 126 | 0.558 |
127 | 127 | 0.422 |
128 | 128 | 0.496 |
129 | 129 | 0.691 |
13 | 13 | 0.93 |
130 | 130 | 0.327 |
131 | 131 | 0.0849 |
132 | 132 | 0.501 |
133 | 133 | 0.653 |
134 | 134 | 0.0643 |
135 | 135 | 0.963 |
136 | 136 | 0.0589 |
137 | 137 | 0.266 |
138 | 138 | 0.217 |
139 | 139 | 0.784 |
14 | 14 | 0.772 |
140 | 140 | 0.161 |
141 | 141 | 0.0951 |
142 | 142 | 0.987 |
143 | 143 | 0.194 |
144 | 144 | 0.427 |
145 | 145 | 0.57 |
146 | 146 | 0.867 |
147 | 147 | 0.0947 |
148 | 148 | 0.304 |
149 | 149 | 0.0417 |
15 | 15 | 0.11 |
150 | 150 | 0.902 |
151 | 151 | 0.837 |
152 | 152 | 0.218 |
153 | 153 | 0.365 |
154 | 154 | 0.484 |
155 | 155 | 0.00555 |
156 | 156 | 0.321 |
157 | 157 | 0.58 |
158 | 158 | 0.0777 |
159 | 159 | 0.876 |
16 | 16 | 0.316 |
160 | 160 | 0.735 |
161 | 161 | 0.779 |
162 | 162 | 0.0635 |
163 | 163 | 0.65 |
164 | 164 | 0.159 |
165 | 165 | 0.71 |
166 | 166 | 0.426 |
167 | 167 | 0.025 |
168 | 168 | 0.693 |
169 | 169 | 0.0248 |
17 | 17 | 0.971 |
18 | 18 | 0.932 |
19 | 19 | 0.0355 |
2 | 2 | 0.152 |
20 | 20 | 0.0831 |
21 | 21 | 0.341 |
22 | 22 | 0.204 |
23 | 23 | 0.892 |
24 | 24 | 0.571 |
25 | 25 | 0.532 |
26 | 26 | 0.297 |
27 | 27 | 0.567 |
28 | 28 | 0.27 |
29 | 29 | 0.157 |
3 | 3 | 0.355 |
30 | 30 | 0.248 |
31 | 31 | 0.888 |
32 | 32 | 1.08339e-9 |
33 | 33 | 0.259 |
34 | 34 | 0.58 |
35 | 35 | 0.478 |
36 | 36 | 0.151 |
37 | 37 | 0.932 |
38 | 38 | 0.447 |
39 | 39 | 0.227 |
4 | 4 | 0.72 |
40 | 40 | 0.0791 |
41 | 41 | 0.0729 |
42 | 42 | 0.401 |
43 | 43 | 0.558 |
44 | 44 | 0.818 |
45 | 45 | 0.577 |
46 | 46 | 0.991 |
47 | 47 | 0.546 |
48 | 48 | 0.746 |
49 | 49 | 0.393 |
5 | 5 | 0.832 |
50 | 50 | 0.439 |
51 | 51 | 0.829 |
52 | 52 | 0.881 |
53 | 53 | 0.656 |
54 | 54 | 0.801 |
55 | 55 | 0.857 |
56 | 56 | 0.876 |
57 | 57 | 0.605 |
58 | 58 | 0.168 |
59 | 59 | 0.597 |
6 | 6 | 0.833 |
60 | 60 | 0.513 |
61 | 61 | 0.47 |
62 | 62 | 0.555 |
63 | 63 | 0.9 |
64 | 64 | 0.508 |
65 | 65 | 0.818 |
66 | 66 | 0.585 |
67 | 67 | 0.823 |
68 | 68 | 0.799 |
69 | 69 | 0.904 |
7 | 7 | 0.742 |
70 | 70 | 0.351 |
71 | 71 | 0.118 |
72 | 72 | 0.197 |
73 | 73 | 0.594 |
74 | 74 | 0.417 |
75 | 75 | 0.251 |
76 | 76 | 0.0354 |
77 | 77 | 0.632 |
78 | 78 | 0.458 |
79 | 79 | 0.0113 |
8 | 8 | 0.937 |
80 | 80 | 0.647 |
81 | 81 | 0.379 |
82 | 82 | 0.875 |
83 | 83 | 0.272 |
84 | 84 | 0.592 |
85 | 85 | 0.947 |
86 | 86 | 0.697 |
87 | 87 | 0.222 |
88 | 88 | 0.713 |
89 | 89 | 0.194 |
9 | 9 | 0.198 |
90 | 90 | 0.323 |
91 | 91 | 0.895 |
92 | 92 | 0.891 |
93 | 93 | 0.659 |
94 | 94 | 0.522 |
95 | 95 | 0.0859 |
96 | 96 | 0.822 |
97 | 97 | 0.775 |
98 | 98 | 0.119 |
99 | 99 | 0.00294 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11084
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0104975 human myotube cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000162 (human skeletal muscle cell sample)
0104975 (human myotube cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)