FF:11275-116H6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005090 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005090 | ||
|accession_numbers=CAGE;DRX008373;DRR009245;DRZ000670;DRZ002055;DRZ012020;DRZ013405 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037175;DRR041541;DRZ007183 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004121,UBERON:0011216,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000047,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002371,CL:0002319,CL:0000255,CL:0000034 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000120 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor1.CNhs11063.11275-116H6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor1.CNhs11063.11275-116H6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor1.CNhs11063.11275-116H6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor1.CNhs11063.11275-116H6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor1.CNhs11063.11275-116H6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11275-116H6 | |id=FF:11275-116H6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000120 | ||
|is_obsolete= | |||
|library_id=CNhs11063 | |||
|library_id_phase_based=2:CNhs11063 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11275 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11275 | |||
|name=Neural stem cells, donor1 | |name=Neural stem cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 63: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11063,LSID723,release008,COMPLETED | |profile_hcage=CNhs11063,LSID723,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10011,,, | |profile_srnaseq=SRhi10011,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.195798334806536,0,-0.27483329820609,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.000372409945368135,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.317954060866147,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0189970391880939,0.402187029232461,-0.0969923612426051,0,0,0.000986679000328686,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178455840471772,0,0,0,0,0.089227920235886,0,0,0,0,0.0578862962343893,0.0442218168083754,0.258390049342694,0,0.00552836154468858,0.364159235726084,0.118157585304004,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0.0983303062134256,0,0,0,0,0,-0.0071456736865751,0,0,0,-0.170391984681829,-0.257802796587978,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.0983303062134256,-0.0980353512377064,0.0983303062134256,0,0,0,0.178455840471772,0,0.516780098685389,0,0,0,0,0.155008153946896,0.387198480455848,0.532268838391518,-0.143515142523472,0,0,-0.12270702953201,0,0.178455840471772,0,0.0519293338790571,0,0,0,0.0983303062134256,1.89766584422143,0.050335973519207,0,0.128043288882457,0,0,0.0534107029501535,0,0.0875240830771995,-0.0593963640510854,0,0.10030160557854,0.0299860451360574,0.0491651531067128,0,0.0983303062134256,0,-0.0241648024870025,0,0.18369257358382,0.0156101378900083,1.66251936203532,0.496820182130639,-0.055712496781182,0,0,0,0.342792513336108,0.00919882135874706,0,0,0.244282586638236,0.381604401921874,0,0,1.05508901627881,0,-0.175492403201679,0.181496475684443,0,0,0,0,0,0,0.0983303062134256,0,0,0.0983303062134256,0.246075866847322,0.089227920235886,0,0.080899606521162,-0.326988596678969,0.0983303062134256,0,0.246075866847322,0,0.00682983462165176,0.0983303062134256,0,-0.373286155956567,-0.22465046819106,0.11648956909193,0.0240677785095355,0,0.276826729895344,-0.0957710458595601,0.225968705784553,0.401610019578491,0.0986740174761834,0.253854060064411,0,0.0113200094950068,0.197769138264969,0.0985720057835661,-0.28969389291286,0.110935194300427,0.71006402609657,-0.328383373901189,0,0.0983303062134256,0,-0.106433811237684,0.0788420355856394,0.0983303062134256,-0.133998349583852,-0.0364253293733907,0.383986672550232,0.0167307296358665,-0.0834030855331835,0.183241339234799,1.6951260830843,0.40899064185389,0,0.466276104826312,0.213596755200824,0.579216456905257,0.0883516685097787,0.249730904157948,0.3589367814752,-0.213639143946218,0.0236310369863869,-0.00213984889187269,0.236227796300192,0.287375891603705,0.017915002230348,-0.0317338682096855,0.0983303062134256,0.0166430542034363,-0.274205173493851,0,0,0,0.0983303062134256,0.356116364892922,0.0740058365435543,-0.441161836816741,0.0132203052917771,0.0983297676797256,0.0857398267476615,0.0397773316762051,-0.0388960310098921,0.0647612523195799,0.104318285758209,-0.0237149211390338,0.0983303062134256,0.0575864081459072,0.0537364093147761,-0.201097951710433,-0.392089811570553,0.0134651441327689,0.236315170608008,0.77687436487194,0.241968016476214,-0.191600553064937,0.219918304593818,-0.542863997942905,0.0578862962343893,0.63775284794076,0.193969113806819,0.0257250141911579,-0.501042291149753,-0.0106792509204126,0.128577323600803,0.178455840471772,0.139518870681204,0,0.169743992429406,0,-0.154086450250823,-0.294357884625918,0.0774907241047025,-0.108025752891149,0,0.0646800866174819,-0.0040921993455254,0,-0.187130278032242,0.0858560116027414,0,0.205749281558283,0.153456608303709,0.133305395366201,0.224798130284741,0,-0.107806946728037,0,0.246075866847322,0.216182407968567,-0.235476037764389,0,0.106780096472065,0.39715214293013,0.663718648862048,-0.115971073434934,0,0,-0.341128280615164,0.0983303062134256,0,0.794419749318546,0.356116364892922,0.447360995598642,0.512178138174247,0.131301961455369,0.501916105624748,0.0541023648191491,0.402187029232461,0.339252332720213,0,0.435236799756191,0,0,0.231759720089829,-0.116628112990133,0,0.400907142478974,1.84893956383736,0,0,0,0.481837612919108,0,0,0,0.0161721536614638,-0.585410702516556,-0.176377489744676,0,0.424792813380062,0,0,0,0,0.0983303062134256,0.0245418489131403,0.0983303062134256,0,0.979075669168841,0.158969014314808,0.426101917779679,0.0491651531067128,0.0491651531067128,0.0491651531067128,0,-0.215723402553475,-0.104906255881298,0.0983303062134256,0.11421316034969,0,0.0983303062134256,0,0,-0.0861409897892114,0,0,0,0,0.0405998491597616,-0.199358972622188,0,0,0,-0.27695440160179,0,0,0,0.0395659681371912,0.0708432739110862,0,0,0.0140523549898215,0,-0.0206723351975555,0.274534485346081,0.224501571239135,-0.320211456300849,-0.490445957988998,0.293855010743572,0,0,0.0432249255876732,0,0,0.0118671411062949,0,0,0.29385614266335,0,0,0,0,0.0983303062134256,0,0.187872516832705,0,0,0,0,0,0,0,0.178455840471772,0,0,0.0983303062134256,0.176510263640286,-0.0922240566585104,0.0983303062134256,0,0.0270074060053962,0,0,0,0.0983303062134256,-0.0241060230789031,0.0047831561046455,0,0,0,0,0,0,0,0,-0.0692389104307813,0,0,0.532949716070744,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,-0.179031825980088,0,0,0,0,0,0,0,0.0235919467775506,0,0,0,0,0,0.055136754436324,-0.333085063191101,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,-0.113884373708977,0,0,0,0.199775672588404,0,0.195798334806536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00109543837390935,-0.115565772030464,0.168281250184194,-0.0891321498829138,-0.110486230516145,0,0,-0.0107104628259128,0,0,0,0,0,0,0.0178247290781858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0421671020525955,0,0,0,0,0,0,0,0.000372409945368135,0,0,0.00629749641289952,0,0,0,0,0,0.0372618169013449,-0.198748920420824,0.158673857318262,0.1987094104258,0,0,0.0983303062134256,0.0439447337309706,0,0,0.0385433970901352,0.402187029232461,0.0315529187945243,0,0,0,0.00138096467018156,0.0983303062134256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=custom | |rna_catalog_number=custom | ||
| Line 56: | Line 80: | ||
|rna_tube_id=116H6 | |rna_tube_id=116H6 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10011.ATGTCA | |||
|sample_age=embryo 19week | |sample_age=embryo 19week | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 95: | ||
|sample_ethnicity=U | |sample_ethnicity=U | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.20324195200997e-234!GO:0043226;organelle;1.754350872479e-193!GO:0043229;intracellular organelle;1.44249610122397e-192!GO:0043227;membrane-bound organelle;1.1847092503095e-188!GO:0043231;intracellular membrane-bound organelle;1.3018490320821e-188!GO:0005737;cytoplasm;3.21630677765336e-145!GO:0044422;organelle part;1.98909357332243e-124!GO:0044446;intracellular organelle part;6.02550114388866e-123!GO:0005634;nucleus;2.07145040272937e-96!GO:0044444;cytoplasmic part;1.747117798361e-90!GO:0032991;macromolecular complex;6.16450241660695e-88!GO:0005515;protein binding;1.32380585764915e-81!GO:0044238;primary metabolic process;2.32828273233474e-73!GO:0043170;macromolecule metabolic process;8.73202935360696e-72!GO:0044237;cellular metabolic process;1.82267330202443e-71!GO:0030529;ribonucleoprotein complex;1.16641580955501e-68!GO:0044428;nuclear part;1.16641580955501e-68!GO:0016043;cellular component organization and biogenesis;2.96535841677685e-63!GO:0003723;RNA binding;2.97244821350293e-62!GO:0043233;organelle lumen;8.31941811511807e-62!GO:0031974;membrane-enclosed lumen;8.31941811511807e-62!GO:0043283;biopolymer metabolic process;1.84892235018059e-54!GO:0010467;gene expression;4.64283551515427e-49!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.85994032058752e-49!GO:0043234;protein complex;1.39190167889974e-45!GO:0006396;RNA processing;7.11260189498785e-45!GO:0033036;macromolecule localization;4.82170633507181e-42!GO:0016071;mRNA metabolic process;4.76505073881341e-41!GO:0031981;nuclear lumen;9.32658519468202e-41!GO:0005739;mitochondrion;4.07315644548501e-40!GO:0015031;protein transport;3.25888372284509e-39!GO:0008380;RNA splicing;1.29509157734622e-38!GO:0006996;organelle organization and biogenesis;6.42288299918514e-38!GO:0031090;organelle membrane;1.00389318351131e-37!GO:0008104;protein localization;1.80896799168825e-37!GO:0045184;establishment of protein localization;8.47767255333081e-36!GO:0006397;mRNA processing;1.61703464337999e-35!GO:0005840;ribosome;1.73785269344992e-34!GO:0043228;non-membrane-bound organelle;2.2689182079236e-34!GO:0043232;intracellular non-membrane-bound organelle;2.2689182079236e-34!GO:0003676;nucleic acid binding;4.08299997182025e-34!GO:0046907;intracellular transport;4.7252246983528e-34!GO:0006259;DNA metabolic process;4.65397077468565e-31!GO:0006412;translation;1.87416385311801e-30!GO:0031967;organelle envelope;5.22432740804919e-30!GO:0031975;envelope;5.68078158310911e-30!GO:0003735;structural constituent of ribosome;1.34684884637366e-29!GO:0044429;mitochondrial part;2.59835307561468e-29!GO:0019538;protein metabolic process;7.86566952183733e-29!GO:0016070;RNA metabolic process;3.87703536564569e-28!GO:0065003;macromolecular complex assembly;8.67798907509214e-28!GO:0005681;spliceosome;9.74277523262768e-27!GO:0005654;nucleoplasm;6.39239373231485e-26!GO:0006886;intracellular protein transport;2.01853808740994e-25!GO:0044260;cellular macromolecule metabolic process;2.48559624668131e-25!GO:0005829;cytosol;4.4350049031934e-25!GO:0044267;cellular protein metabolic process;5.05744765656834e-25!GO:0007049;cell cycle;7.16644204526636e-25!GO:0033279;ribosomal subunit;8.29416566426772e-25!GO:0022607;cellular component assembly;8.44061050548019e-25!GO:0051649;establishment of cellular localization;1.25813276901565e-23!GO:0009059;macromolecule biosynthetic process;3.72696598295506e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.81560414977737e-23!GO:0051641;cellular localization;5.06752185757162e-23!GO:0000166;nucleotide binding;1.06225564967916e-22!GO:0009058;biosynthetic process;1.99066070844208e-22!GO:0044249;cellular biosynthetic process;2.15135113695832e-21!GO:0044451;nucleoplasm part;3.46591943282705e-21!GO:0017111;nucleoside-triphosphatase activity;4.03792172859715e-21!GO:0016462;pyrophosphatase activity;4.35059207650873e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.63864362702498e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;5.81159050000957e-21!GO:0019866;organelle inner membrane;6.15060647655918e-19!GO:0005740;mitochondrial envelope;1.97246953221953e-18!GO:0022402;cell cycle process;2.06514808708541e-18!GO:0006119;oxidative phosphorylation;4.14962107354325e-18!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.56212173002038e-18!GO:0051276;chromosome organization and biogenesis;5.78880462541682e-18!GO:0005694;chromosome;6.53223097074053e-18!GO:0000278;mitotic cell cycle;1.23730860306616e-17!GO:0031966;mitochondrial membrane;1.56200761110512e-17!GO:0005743;mitochondrial inner membrane;5.12511341199056e-17!GO:0006974;response to DNA damage stimulus;1.77880777416028e-16!GO:0006512;ubiquitin cycle;2.21079012823057e-16!GO:0012505;endomembrane system;2.84369305301517e-16!GO:0044427;chromosomal part;7.83764952454415e-16!GO:0048770;pigment granule;1.02679399460789e-15!GO:0042470;melanosome;1.02679399460789e-15!GO:0016874;ligase activity;1.13002387879334e-15!GO:0044445;cytosolic part;2.00176529928027e-15!GO:0050794;regulation of cellular process;2.21358512089847e-15!GO:0005794;Golgi apparatus;3.57958844954224e-15!GO:0008134;transcription factor binding;4.14261136853286e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;4.20394070328878e-15!GO:0006457;protein folding;7.28627963763873e-15!GO:0032553;ribonucleotide binding;7.59544784750258e-15!GO:0032555;purine ribonucleotide binding;7.59544784750258e-15!GO:0022618;protein-RNA complex assembly;9.17251895981444e-15!GO:0006323;DNA packaging;2.25799482320738e-14!GO:0005730;nucleolus;2.51913455415412e-14!GO:0000087;M phase of mitotic cell cycle;5.03874467730788e-14!GO:0017076;purine nucleotide binding;6.95608722237582e-14!GO:0007067;mitosis;1.07086570029004e-13!GO:0015630;microtubule cytoskeleton;1.2957063727922e-13!GO:0031980;mitochondrial lumen;2.77617225400601e-13!GO:0005759;mitochondrial matrix;2.77617225400601e-13!GO:0044455;mitochondrial membrane part;2.81791702569017e-13!GO:0000502;proteasome complex (sensu Eukaryota);3.49088943940246e-13!GO:0015935;small ribosomal subunit;3.54788000005129e-13!GO:0050789;regulation of biological process;3.54788000005129e-13!GO:0006281;DNA repair;3.89670738045314e-13!GO:0008135;translation factor activity, nucleic acid binding;4.52205944609882e-13!GO:0022403;cell cycle phase;5.32572915692244e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;7.00579102861374e-13!GO:0006511;ubiquitin-dependent protein catabolic process;9.55135132912525e-13!GO:0019941;modification-dependent protein catabolic process;1.15099248769204e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.15099248769204e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.26910617763984e-12!GO:0000375;RNA splicing, via transesterification reactions;1.26910617763984e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.26910617763984e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.23365494628621e-12!GO:0044257;cellular protein catabolic process;2.29990963223828e-12!GO:0006605;protein targeting;2.53139439937925e-12!GO:0015934;large ribosomal subunit;2.56330309413629e-12!GO:0031965;nuclear membrane;2.58133878974266e-12!GO:0051301;cell division;2.58133878974266e-12!GO:0043285;biopolymer catabolic process;2.61727770796375e-12!GO:0048193;Golgi vesicle transport;3.94481352157003e-12!GO:0044265;cellular macromolecule catabolic process;4.09128346006075e-12!GO:0005635;nuclear envelope;4.66328611463853e-12!GO:0030163;protein catabolic process;5.25294722337391e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.22911948134411e-11!GO:0003954;NADH dehydrogenase activity;1.22911948134411e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.22911948134411e-11!GO:0016192;vesicle-mediated transport;1.51786248232263e-11!GO:0005746;mitochondrial respiratory chain;1.60529443806098e-11!GO:0051082;unfolded protein binding;2.47561267926058e-11!GO:0016604;nuclear body;2.51996823559084e-11!GO:0005524;ATP binding;2.66793995827451e-11!GO:0016887;ATPase activity;3.01509589544254e-11!GO:0032559;adenyl ribonucleotide binding;4.3154923134054e-11!GO:0006260;DNA replication;6.78253405107281e-11!GO:0044453;nuclear membrane part;7.09141485756955e-11!GO:0009057;macromolecule catabolic process;7.36560763278844e-11!GO:0042623;ATPase activity, coupled;1.04249084127307e-10!GO:0006366;transcription from RNA polymerase II promoter;1.29018127957353e-10!GO:0000279;M phase;1.44767988869565e-10!GO:0043412;biopolymer modification;1.81438154646027e-10!GO:0006403;RNA localization;1.81438154646027e-10!GO:0016607;nuclear speck;2.11147332670591e-10!GO:0006333;chromatin assembly or disassembly;2.23865434168014e-10!GO:0009719;response to endogenous stimulus;2.3412312396338e-10!GO:0006913;nucleocytoplasmic transport;2.46803826535762e-10!GO:0005761;mitochondrial ribosome;3.03625046934164e-10!GO:0000313;organellar ribosome;3.03625046934164e-10!GO:0004386;helicase activity;3.14350360297855e-10!GO:0030554;adenyl nucleotide binding;3.98489582619496e-10!GO:0050657;nucleic acid transport;4.05527451199658e-10!GO:0051236;establishment of RNA localization;4.05527451199658e-10!GO:0050658;RNA transport;4.05527451199658e-10!GO:0000074;regulation of progression through cell cycle;4.15085414363189e-10!GO:0051726;regulation of cell cycle;4.26811104394312e-10!GO:0003743;translation initiation factor activity;5.51829796103296e-10!GO:0019222;regulation of metabolic process;5.72185662822542e-10!GO:0065004;protein-DNA complex assembly;6.14009972371211e-10!GO:0042775;organelle ATP synthesis coupled electron transport;6.40146962591113e-10!GO:0042773;ATP synthesis coupled electron transport;6.40146962591113e-10!GO:0030964;NADH dehydrogenase complex (quinone);6.59456280772958e-10!GO:0045271;respiratory chain complex I;6.59456280772958e-10!GO:0005747;mitochondrial respiratory chain complex I;6.59456280772958e-10!GO:0051169;nuclear transport;7.02147077408336e-10!GO:0005643;nuclear pore;7.78962483095115e-10!GO:0000785;chromatin;8.91754643422082e-10!GO:0008565;protein transporter activity;1.04637679883907e-09!GO:0005783;endoplasmic reticulum;1.41927386448516e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.51640558863954e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.57826690950255e-09!GO:0008639;small protein conjugating enzyme activity;1.81458398326125e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.13014384610011e-09!GO:0048523;negative regulation of cellular process;2.13036544688284e-09!GO:0003712;transcription cofactor activity;2.3972513954716e-09!GO:0004842;ubiquitin-protein ligase activity;2.88782226757616e-09!GO:0006464;protein modification process;4.20235508222658e-09!GO:0019787;small conjugating protein ligase activity;4.43850594675792e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.04026842298081e-09!GO:0006413;translational initiation;7.05461529521863e-09!GO:0042254;ribosome biogenesis and assembly;7.07928609519118e-09!GO:0006446;regulation of translational initiation;7.47450860198289e-09!GO:0044248;cellular catabolic process;1.05958535228629e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.48662878181349e-08!GO:0051186;cofactor metabolic process;1.78909008085686e-08!GO:0003924;GTPase activity;2.41889433223079e-08!GO:0051028;mRNA transport;2.66720724264648e-08!GO:0044432;endoplasmic reticulum part;2.94535290212565e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.83176655422225e-08!GO:0008026;ATP-dependent helicase activity;3.88643216263612e-08!GO:0031252;leading edge;3.95000001365e-08!GO:0009259;ribonucleotide metabolic process;3.98914586080725e-08!GO:0043687;post-translational protein modification;4.13898579032067e-08!GO:0065002;intracellular protein transport across a membrane;4.62611022511069e-08!GO:0006163;purine nucleotide metabolic process;5.8001573126962e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.55927521660722e-08!GO:0019829;cation-transporting ATPase activity;7.07511329153723e-08!GO:0006350;transcription;7.78601045463015e-08!GO:0016881;acid-amino acid ligase activity;8.05301354673642e-08!GO:0031323;regulation of cellular metabolic process;8.53400144261474e-08!GO:0031988;membrane-bound vesicle;9.22708528774388e-08!GO:0009150;purine ribonucleotide metabolic process;9.22708528774388e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.18420535879491e-07!GO:0048519;negative regulation of biological process;1.20572116386801e-07!GO:0015986;ATP synthesis coupled proton transport;1.3175447400197e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.3175447400197e-07!GO:0016568;chromatin modification;1.34469431562635e-07!GO:0006334;nucleosome assembly;1.46906392867046e-07!GO:0031982;vesicle;2.38447596555655e-07!GO:0016023;cytoplasmic membrane-bound vesicle;2.48795569595787e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.72156323769589e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.74440036415821e-07!GO:0006164;purine nucleotide biosynthetic process;2.7979147002703e-07!GO:0043566;structure-specific DNA binding;3.2227725012962e-07!GO:0009260;ribonucleotide biosynthetic process;3.37783362997226e-07!GO:0009141;nucleoside triphosphate metabolic process;3.43812692963649e-07!GO:0044431;Golgi apparatus part;3.63387439487204e-07!GO:0046930;pore complex;3.76254522482677e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.82635138714482e-07!GO:0009144;purine nucleoside triphosphate metabolic process;3.82635138714482e-07!GO:0009152;purine ribonucleotide biosynthetic process;4.44174940633243e-07!GO:0003697;single-stranded DNA binding;4.5382182030796e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.07555502829675e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.07555502829675e-07!GO:0065007;biological regulation;5.2252258004679e-07!GO:0006732;coenzyme metabolic process;5.2252258004679e-07!GO:0006461;protein complex assembly;5.6069218456715e-07!GO:0007010;cytoskeleton organization and biogenesis;5.7371086016875e-07!GO:0009060;aerobic respiration;5.98556780215436e-07!GO:0031410;cytoplasmic vesicle;6.74350769456391e-07!GO:0031497;chromatin assembly;6.91715318221627e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.14645173169836e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.14645173169836e-07!GO:0045333;cellular respiration;8.66255546181184e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.16008454118371e-07!GO:0010468;regulation of gene expression;9.88170303369596e-07!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.19459690374291e-06!GO:0046034;ATP metabolic process;1.55124672611212e-06!GO:0005874;microtubule;1.6532036845951e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.78212335640604e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.80410812059244e-06!GO:0032446;protein modification by small protein conjugation;1.9089339211032e-06!GO:0005768;endosome;2.22675872472942e-06!GO:0017038;protein import;2.30409399362745e-06!GO:0006754;ATP biosynthetic process;2.35732276732572e-06!GO:0006753;nucleoside phosphate metabolic process;2.35732276732572e-06!GO:0030120;vesicle coat;2.40626169841421e-06!GO:0030662;coated vesicle membrane;2.40626169841421e-06!GO:0000245;spliceosome assembly;2.41235162979179e-06!GO:0005813;centrosome;2.58255631510444e-06!GO:0005793;ER-Golgi intermediate compartment;3.21087266488505e-06!GO:0016567;protein ubiquitination;3.99241759600183e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.17120940635044e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.60539250910255e-06!GO:0004812;aminoacyl-tRNA ligase activity;4.60539250910255e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.60539250910255e-06!GO:0032774;RNA biosynthetic process;4.65418811292327e-06!GO:0005525;GTP binding;5.01375266959152e-06!GO:0000902;cell morphogenesis;5.01375266959152e-06!GO:0032989;cellular structure morphogenesis;5.01375266959152e-06!GO:0031324;negative regulation of cellular metabolic process;5.06137521984978e-06!GO:0000775;chromosome, pericentric region;5.08761880371186e-06!GO:0008092;cytoskeletal protein binding;5.3149901803955e-06!GO:0006351;transcription, DNA-dependent;5.38181148535683e-06!GO:0048475;coated membrane;6.05963105484462e-06!GO:0030117;membrane coat;6.05963105484462e-06!GO:0005815;microtubule organizing center;6.09662907617617e-06!GO:0012501;programmed cell death;6.26560260566788e-06!GO:0016363;nuclear matrix;6.29800635880254e-06!GO:0005667;transcription factor complex;6.62843417862968e-06!GO:0045786;negative regulation of progression through cell cycle;6.66917358983845e-06!GO:0006099;tricarboxylic acid cycle;7.56679920920297e-06!GO:0046356;acetyl-CoA catabolic process;7.56679920920297e-06!GO:0030532;small nuclear ribonucleoprotein complex;7.7904738097857e-06!GO:0015631;tubulin binding;8.33104704344082e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.95669745560542e-06!GO:0006613;cotranslational protein targeting to membrane;1.01926432992163e-05!GO:0043038;amino acid activation;1.11636773254067e-05!GO:0006418;tRNA aminoacylation for protein translation;1.11636773254067e-05!GO:0043039;tRNA aminoacylation;1.11636773254067e-05!GO:0007017;microtubule-based process;1.26940915549617e-05!GO:0005789;endoplasmic reticulum membrane;1.34203656392802e-05!GO:0003724;RNA helicase activity;1.36621136904908e-05!GO:0005798;Golgi-associated vesicle;1.40247496835982e-05!GO:0005819;spindle;1.42663690568261e-05!GO:0006915;apoptosis;1.42998858853626e-05!GO:0006364;rRNA processing;1.4342007199164e-05!GO:0009892;negative regulation of metabolic process;1.44775323121854e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.45150886789152e-05!GO:0000139;Golgi membrane;1.67536196108648e-05!GO:0006399;tRNA metabolic process;1.90914518508485e-05!GO:0051329;interphase of mitotic cell cycle;1.92083867261662e-05!GO:0006084;acetyl-CoA metabolic process;1.92858779035123e-05!GO:0006261;DNA-dependent DNA replication;1.92858779035123e-05!GO:0008219;cell death;2.03577928433168e-05!GO:0016265;death;2.03577928433168e-05!GO:0045449;regulation of transcription;2.24661861506424e-05!GO:0045259;proton-transporting ATP synthase complex;2.39981639769593e-05!GO:0051168;nuclear export;2.9139251148076e-05!GO:0016564;transcription repressor activity;2.9139251148076e-05!GO:0005770;late endosome;3.42509187625692e-05!GO:0003729;mRNA binding;3.4375066794182e-05!GO:0016072;rRNA metabolic process;3.46916035109361e-05!GO:0009056;catabolic process;3.94074795502415e-05!GO:0051427;hormone receptor binding;4.19939373362678e-05!GO:0005839;proteasome core complex (sensu Eukaryota);5.06442429932987e-05!GO:0016481;negative regulation of transcription;5.24432706670195e-05!GO:0051325;interphase;5.24432706670195e-05!GO:0019899;enzyme binding;5.4852175776867e-05!GO:0032561;guanyl ribonucleotide binding;5.63065947044924e-05!GO:0019001;guanyl nucleotide binding;5.63065947044924e-05!GO:0003713;transcription coactivator activity;5.8052104057707e-05!GO:0051170;nuclear import;5.8052104057707e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.15664918452397e-05!GO:0003682;chromatin binding;6.69237153132879e-05!GO:0044440;endosomal part;6.72487924719594e-05!GO:0010008;endosome membrane;6.72487924719594e-05!GO:0009109;coenzyme catabolic process;7.23354794631153e-05!GO:0006606;protein import into nucleus;7.89227748416854e-05!GO:0035257;nuclear hormone receptor binding;8.68988101277857e-05!GO:0007051;spindle organization and biogenesis;8.89791660397238e-05!GO:0015078;hydrogen ion transmembrane transporter activity;8.91391022787585e-05!GO:0008361;regulation of cell size;0.000101271662969923!GO:0043623;cellular protein complex assembly;0.000110354611457969!GO:0006793;phosphorus metabolic process;0.000115233453379547!GO:0006796;phosphate metabolic process;0.000115233453379547!GO:0003677;DNA binding;0.000115764710129456!GO:0051187;cofactor catabolic process;0.000119585405981148!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000121405396945043!GO:0003714;transcription corepressor activity;0.000133978643306702!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000135661940906281!GO:0016563;transcription activator activity;0.000137971694311339!GO:0016049;cell growth;0.000143865418731895!GO:0006752;group transfer coenzyme metabolic process;0.000157975948437259!GO:0009055;electron carrier activity;0.000162545430760119!GO:0051188;cofactor biosynthetic process;0.000173616895788164!GO:0006355;regulation of transcription, DNA-dependent;0.000175797648654558!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000184436622359075!GO:0030027;lamellipodium;0.000187434058422394!GO:0008186;RNA-dependent ATPase activity;0.000188815727473439!GO:0016310;phosphorylation;0.000206614134893498!GO:0000151;ubiquitin ligase complex;0.000216512328624196!GO:0043069;negative regulation of programmed cell death;0.000227283434418511!GO:0000776;kinetochore;0.00024421971540417!GO:0000075;cell cycle checkpoint;0.000258504961316083!GO:0007059;chromosome segregation;0.000276848418465298!GO:0007005;mitochondrion organization and biogenesis;0.000284940558501285!GO:0048471;perinuclear region of cytoplasm;0.000285437810390372!GO:0030867;rough endoplasmic reticulum membrane;0.000287470240032409!GO:0005657;replication fork;0.000288801245117038!GO:0004298;threonine endopeptidase activity;0.000299131005147652!GO:0003690;double-stranded DNA binding;0.000299612700674102!GO:0001558;regulation of cell growth;0.000330113508227873!GO:0005048;signal sequence binding;0.000355156283966014!GO:0051246;regulation of protein metabolic process;0.000365665883940327!GO:0043066;negative regulation of apoptosis;0.000381248755748873!GO:0048468;cell development;0.000394077194699512!GO:0008654;phospholipid biosynthetic process;0.000394077194699512!GO:0005788;endoplasmic reticulum lumen;0.000456592796798495!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00047179540098874!GO:0001726;ruffle;0.000524636379411242!GO:0004004;ATP-dependent RNA helicase activity;0.000566710957553501!GO:0005905;coated pit;0.000577829299999185!GO:0031124;mRNA 3'-end processing;0.000577829299999185!GO:0007264;small GTPase mediated signal transduction;0.000676494529680652!GO:0005769;early endosome;0.00068908749142277!GO:0009117;nucleotide metabolic process;0.000747084588612811!GO:0006402;mRNA catabolic process;0.000767463099251712!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000790325060861162!GO:0009108;coenzyme biosynthetic process;0.000804138450087371!GO:0005875;microtubule associated complex;0.000876401447329242!GO:0016044;membrane organization and biogenesis;0.000889464029260914!GO:0006916;anti-apoptosis;0.000935852226354322!GO:0007050;cell cycle arrest;0.00101694160508292!GO:0006891;intra-Golgi vesicle-mediated transport;0.00115904979193558!GO:0043021;ribonucleoprotein binding;0.00118688437618155!GO:0008250;oligosaccharyl transferase complex;0.00124304581736041!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00126109758486324!GO:0045893;positive regulation of transcription, DNA-dependent;0.00131771556292611!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00142650038610029!GO:0015980;energy derivation by oxidation of organic compounds;0.00146199683018012!GO:0006302;double-strand break repair;0.00147814034205363!GO:0033673;negative regulation of kinase activity;0.0015530315378202!GO:0006469;negative regulation of protein kinase activity;0.0015530315378202!GO:0030036;actin cytoskeleton organization and biogenesis;0.00157825296472684!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00163475383840264!GO:0015399;primary active transmembrane transporter activity;0.00163475383840264!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.001644637276114!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00172508926490129!GO:0016740;transferase activity;0.00173469087071407!GO:0008017;microtubule binding;0.00177490206894835!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00188091284332245!GO:0051087;chaperone binding;0.00195371581399171!GO:0050767;regulation of neurogenesis;0.00195942260070831!GO:0006612;protein targeting to membrane;0.0019789885205647!GO:0045892;negative regulation of transcription, DNA-dependent;0.00214651397455594!GO:0051920;peroxiredoxin activity;0.00214661567887901!GO:0005762;mitochondrial large ribosomal subunit;0.00216006802543681!GO:0000315;organellar large ribosomal subunit;0.00216006802543681!GO:0004576;oligosaccharyl transferase activity;0.00216605015414972!GO:0005791;rough endoplasmic reticulum;0.00234848601856339!GO:0006383;transcription from RNA polymerase III promoter;0.00241187500368252!GO:0051052;regulation of DNA metabolic process;0.00244983868757531!GO:0006414;translational elongation;0.00251135013303652!GO:0016859;cis-trans isomerase activity;0.002512665172768!GO:0000059;protein import into nucleus, docking;0.00259592678307643!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00263750929572712!GO:0008270;zinc ion binding;0.00265563244572292!GO:0007052;mitotic spindle organization and biogenesis;0.0026666912121272!GO:0003899;DNA-directed RNA polymerase activity;0.00278365376639625!GO:0008094;DNA-dependent ATPase activity;0.00283149190757003!GO:0031123;RNA 3'-end processing;0.00284817226354057!GO:0000314;organellar small ribosomal subunit;0.00290914355894802!GO:0005763;mitochondrial small ribosomal subunit;0.00290914355894802!GO:0051252;regulation of RNA metabolic process;0.00292204981339486!GO:0048500;signal recognition particle;0.00294338227354904!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00301480155920441!GO:0045941;positive regulation of transcription;0.00303136558912118!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00304515725933046!GO:0000786;nucleosome;0.00309371445227935!GO:0005885;Arp2/3 protein complex;0.00314765320027601!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00327195580222145!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00327195580222145!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00327195580222145!GO:0051348;negative regulation of transferase activity;0.00335205535659886!GO:0008139;nuclear localization sequence binding;0.00336286052757182!GO:0006352;transcription initiation;0.00340132579926769!GO:0030521;androgen receptor signaling pathway;0.00356408861656626!GO:0016779;nucleotidyltransferase activity;0.00376935798995088!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00382820334313186!GO:0007399;nervous system development;0.00389659961357178!GO:0030658;transport vesicle membrane;0.00403496605209775!GO:0016853;isomerase activity;0.00404541768714835!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0041079678260836!GO:0043067;regulation of programmed cell death;0.00416884784313139!GO:0030660;Golgi-associated vesicle membrane;0.00427554796440102!GO:0045045;secretory pathway;0.00429026409709885!GO:0006405;RNA export from nucleus;0.00441656650422242!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00445080677960516!GO:0045047;protein targeting to ER;0.00445080677960516!GO:0007093;mitotic cell cycle checkpoint;0.00474818486766908!GO:0003711;transcription elongation regulator activity;0.00478582719286904!GO:0031072;heat shock protein binding;0.00478582719286904!GO:0042981;regulation of apoptosis;0.00479360978170752!GO:0000209;protein polyubiquitination;0.00493415615222365!GO:0043488;regulation of mRNA stability;0.00508873960464472!GO:0043487;regulation of RNA stability;0.00508873960464472!GO:0000082;G1/S transition of mitotic cell cycle;0.00513525660269152!GO:0016584;nucleosome positioning;0.00514960816232665!GO:0030137;COPI-coated vesicle;0.00515020420724677!GO:0003684;damaged DNA binding;0.00516049768708555!GO:0030029;actin filament-based process;0.00541596334814817!GO:0030663;COPI coated vesicle membrane;0.0056138808735513!GO:0030126;COPI vesicle coat;0.0056138808735513!GO:0005773;vacuole;0.00580757072469998!GO:0040008;regulation of growth;0.00583509412425786!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00594586870660884!GO:0046474;glycerophospholipid biosynthetic process;0.00596521519052644!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00597289792818033!GO:0018196;peptidyl-asparagine modification;0.00598147194929589!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00598147194929589!GO:0030133;transport vesicle;0.00606041270504322!GO:0016251;general RNA polymerase II transcription factor activity;0.00617554573875092!GO:0030127;COPII vesicle coat;0.00625877727667985!GO:0012507;ER to Golgi transport vesicle membrane;0.00625877727667985!GO:0008312;7S RNA binding;0.00630578751716353!GO:0051789;response to protein stimulus;0.00633833747308313!GO:0006986;response to unfolded protein;0.00633833747308313!GO:0048487;beta-tubulin binding;0.00667932498854934!GO:0035258;steroid hormone receptor binding;0.00686086565717149!GO:0006378;mRNA polyadenylation;0.00699937708332737!GO:0046467;membrane lipid biosynthetic process;0.00725141233856481!GO:0005637;nuclear inner membrane;0.00745653849132238!GO:0044452;nucleolar part;0.00787275428382983!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00796238460053972!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00807392213562946!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00852813243948233!GO:0030134;ER to Golgi transport vesicle;0.00864454357447645!GO:0003678;DNA helicase activity;0.00907416963562023!GO:0005869;dynactin complex;0.00932257813935215!GO:0051128;regulation of cellular component organization and biogenesis;0.00946707153646215!GO:0006650;glycerophospholipid metabolic process;0.00952355715289346!GO:0016197;endosome transport;0.00955501657162726!GO:0006338;chromatin remodeling;0.00980816586409772!GO:0043407;negative regulation of MAP kinase activity;0.0099314468677897!GO:0007088;regulation of mitosis;0.0100167742634996!GO:0000792;heterochromatin;0.0108932339380145!GO:0004674;protein serine/threonine kinase activity;0.0109957245151843!GO:0030118;clathrin coat;0.0111796598756438!GO:0043492;ATPase activity, coupled to movement of substances;0.011290015195096!GO:0006376;mRNA splice site selection;0.0116597786721418!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0116597786721418!GO:0030176;integral to endoplasmic reticulum membrane;0.0118597670075253!GO:0006611;protein export from nucleus;0.0118672089728145!GO:0003702;RNA polymerase II transcription factor activity;0.0119973053252948!GO:0016126;sterol biosynthetic process;0.012571245956241!GO:0006401;RNA catabolic process;0.0125820820555269!GO:0030880;RNA polymerase complex;0.0125820820555269!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0125820820555269!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0125820820555269!GO:0030384;phosphoinositide metabolic process;0.0127348583498985!GO:0006275;regulation of DNA replication;0.0128479103006697!GO:0006310;DNA recombination;0.0131953736493692!GO:0007033;vacuole organization and biogenesis;0.013274845275177!GO:0043284;biopolymer biosynthetic process;0.0135878395792306!GO:0000339;RNA cap binding;0.0137438571379937!GO:0005876;spindle microtubule;0.0137886460304033!GO:0050681;androgen receptor binding;0.0139636052270647!GO:0005684;U2-dependent spliceosome;0.0140057049304234!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0141126400067887!GO:0043681;protein import into mitochondrion;0.014135533573196!GO:0017166;vinculin binding;0.0143167802589901!GO:0003779;actin binding;0.0143167802589901!GO:0006607;NLS-bearing substrate import into nucleus;0.0144903172898427!GO:0006818;hydrogen transport;0.0148097950738514!GO:0008022;protein C-terminus binding;0.0149048088494937!GO:0015992;proton transport;0.0153266778105492!GO:0008320;protein transmembrane transporter activity;0.0155945198503317!GO:0000323;lytic vacuole;0.0157274654641981!GO:0005764;lysosome;0.0157274654641981!GO:0008629;induction of apoptosis by intracellular signals;0.0158847924195327!GO:0008601;protein phosphatase type 2A regulator activity;0.0158847924195327!GO:0046489;phosphoinositide biosynthetic process;0.0159660522389807!GO:0043086;negative regulation of catalytic activity;0.0160963460673975!GO:0005832;chaperonin-containing T-complex;0.0164951179719505!GO:0006897;endocytosis;0.0167831578907085!GO:0010324;membrane invagination;0.0167831578907085!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0169367310516302!GO:0031901;early endosome membrane;0.0169918597548776!GO:0043624;cellular protein complex disassembly;0.0170743432860862!GO:0009165;nucleotide biosynthetic process;0.0170750450395901!GO:0001725;stress fiber;0.0170884482821086!GO:0032432;actin filament bundle;0.0170884482821086!GO:0032508;DNA duplex unwinding;0.0171734410628095!GO:0032392;DNA geometric change;0.0171734410628095!GO:0003746;translation elongation factor activity;0.0184719112581037!GO:0006626;protein targeting to mitochondrion;0.0186862042709243!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0188927141703694!GO:0006289;nucleotide-excision repair;0.0195812165654043!GO:0033116;ER-Golgi intermediate compartment membrane;0.0201188255720981!GO:0006695;cholesterol biosynthetic process;0.0202449665519577!GO:0008180;signalosome;0.0203197906012392!GO:0016787;hydrolase activity;0.0207689975147699!GO:0019887;protein kinase regulator activity;0.0212240499455758!GO:0006595;polyamine metabolic process;0.0212334891525798!GO:0007021;tubulin folding;0.0212334891525798!GO:0031902;late endosome membrane;0.0222997717991381!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0226682501000521!GO:0000428;DNA-directed RNA polymerase complex;0.0226682501000521!GO:0012506;vesicle membrane;0.0228106429430711!GO:0031529;ruffle organization and biogenesis;0.0231360020298361!GO:0000096;sulfur amino acid metabolic process;0.0231664968830354!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0239420999147084!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0240885677127031!GO:0040029;regulation of gene expression, epigenetic;0.0240885677127031!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0241517827298394!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0241517827298394!GO:0000904;cellular morphogenesis during differentiation;0.0241892909305799!GO:0032200;telomere organization and biogenesis;0.0247784447344408!GO:0000723;telomere maintenance;0.0247784447344408!GO:0019207;kinase regulator activity;0.0252002289176169!GO:0048146;positive regulation of fibroblast proliferation;0.0256986999915113!GO:0030516;regulation of axon extension;0.0265826537586416!GO:0051656;establishment of organelle localization;0.0265826537586416!GO:0004860;protein kinase inhibitor activity;0.0267622760071702!GO:0032984;macromolecular complex disassembly;0.0270577491124744!GO:0007243;protein kinase cascade;0.0270577491124744!GO:0016408;C-acyltransferase activity;0.0271675277321174!GO:0019902;phosphatase binding;0.0271753644828979!GO:0006268;DNA unwinding during replication;0.0276359869822395!GO:0005669;transcription factor TFIID complex;0.0283559537374622!GO:0006509;membrane protein ectodomain proteolysis;0.0285134716346109!GO:0033619;membrane protein proteolysis;0.0285134716346109!GO:0030659;cytoplasmic vesicle membrane;0.0285629118101737!GO:0005741;mitochondrial outer membrane;0.0285833336334611!GO:0046914;transition metal ion binding;0.0292772553873334!GO:0005862;muscle thin filament tropomyosin;0.0294162953275122!GO:0007004;telomere maintenance via telomerase;0.0295389041053959!GO:0008287;protein serine/threonine phosphatase complex;0.0295389041053959!GO:0019843;rRNA binding;0.0296653111927176!GO:0000159;protein phosphatase type 2A complex;0.0298100712738912!GO:0050770;regulation of axonogenesis;0.0301137575859379!GO:0000049;tRNA binding;0.0307777978088809!GO:0065009;regulation of a molecular function;0.0310509120537338!GO:0031968;organelle outer membrane;0.0312399793072467!GO:0000922;spindle pole;0.03168149656049!GO:0030030;cell projection organization and biogenesis;0.0322672335097094!GO:0048858;cell projection morphogenesis;0.0322672335097094!GO:0032990;cell part morphogenesis;0.0322672335097094!GO:0044433;cytoplasmic vesicle part;0.0323373302830922!GO:0042585;germinal vesicle;0.0324175871173964!GO:0047485;protein N-terminus binding;0.0326597199721983!GO:0006635;fatty acid beta-oxidation;0.0330526632812824!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0331678140568212!GO:0055083;monovalent inorganic anion homeostasis;0.0331678140568212!GO:0055064;chloride ion homeostasis;0.0331678140568212!GO:0030644;cellular chloride ion homeostasis;0.0331678140568212!GO:0006839;mitochondrial transport;0.033851347568789!GO:0043130;ubiquitin binding;0.0343253560799816!GO:0032182;small conjugating protein binding;0.0343253560799816!GO:0051287;NAD binding;0.0346457536299739!GO:0016585;chromatin remodeling complex;0.0346457536299739!GO:0007040;lysosome organization and biogenesis;0.0348905485518927!GO:0008286;insulin receptor signaling pathway;0.0349222483705204!GO:0042026;protein refolding;0.0349977624185769!GO:0048144;fibroblast proliferation;0.0351539785286994!GO:0048145;regulation of fibroblast proliferation;0.0351539785286994!GO:0016407;acetyltransferase activity;0.0353749339228787!GO:0045454;cell redox homeostasis;0.0354710780707144!GO:0006284;base-excision repair;0.0354710780707144!GO:0050811;GABA receptor binding;0.0361422895727628!GO:0000781;chromosome, telomeric region;0.0369542428783466!GO:0030175;filopodium;0.0371664102232835!GO:0005856;cytoskeleton;0.0372270896418992!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0377124608058223!GO:0008097;5S rRNA binding;0.037758238692753!GO:0031970;organelle envelope lumen;0.0378801526820337!GO:0007006;mitochondrial membrane organization and biogenesis;0.0380328967433363!GO:0016272;prefoldin complex;0.0381728197207242!GO:0019867;outer membrane;0.0384514033636858!GO:0030518;steroid hormone receptor signaling pathway;0.0385333437963675!GO:0043631;RNA polyadenylation;0.0391296131796796!GO:0007265;Ras protein signal transduction;0.0391455835397277!GO:0007034;vacuolar transport;0.0391820627859595!GO:0007018;microtubule-based movement;0.0395196074702221!GO:0005784;translocon complex;0.04024807119765!GO:0006672;ceramide metabolic process;0.0417472581306862!GO:0043022;ribosome binding;0.0421180650858198!GO:0045210;FasL biosynthetic process;0.0431310452341617!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.043288070750031!GO:0005521;lamin binding;0.0436544466868577!GO:0017134;fibroblast growth factor binding;0.0438888328149859!GO:0031371;ubiquitin conjugating enzyme complex;0.044012730282734!GO:0000228;nuclear chromosome;0.0445702670440872!GO:0048522;positive regulation of cellular process;0.0448777874577648!GO:0051338;regulation of transferase activity;0.0450847841676233!GO:0030865;cortical cytoskeleton organization and biogenesis;0.045646944412503!GO:0004748;ribonucleoside-diphosphate reductase activity;0.045646944412503!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.045646944412503!GO:0043241;protein complex disassembly;0.0457030846707802!GO:0042158;lipoprotein biosynthetic process;0.0457030846707802!GO:0048667;neuron morphogenesis during differentiation;0.0457451286733342!GO:0048812;neurite morphogenesis;0.0457451286733342!GO:0008143;poly(A) binding;0.0464056708933013!GO:0006497;protein amino acid lipidation;0.0467913703257624!GO:0030182;neuron differentiation;0.0470222493122753!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0474021493430554!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0482205413224298!GO:0007019;microtubule depolymerization;0.0487962292618406!GO:0000725;recombinational repair;0.0488561769480734!GO:0000724;double-strand break repair via homologous recombination;0.0488561769480734!GO:0022406;membrane docking;0.0488936884788959!GO:0048278;vesicle docking;0.0488936884788959 | |||
|sample_id=11275 | |sample_id=11275 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 103: | ||
|sample_tissue=brain | |sample_tissue=brain | ||
|top_motifs=SOX2:3.66571068404;NKX2-3_NKX2-5:3.06998979594;NANOG:2.67442529317;TFDP1:2.66160994633;OCT4_SOX2{dimer}:2.5288807038;LHX3,4:2.34653633445;NKX6-1,2:2.28296011166;MZF1:2.24368282868;SOX17:2.24020477599;MYFfamily:2.18492828658;GFI1:2.10544568573;MTE{core}:2.07802644338;PRRX1,2:2.06240658081;LEF1_TCF7_TCF7L1,2:2.03262860607;PAX8:1.90199128316;ZFP161:1.87774852365;T:1.84457358013;PAX5:1.84256204199;NHLH1,2:1.77394501268;VSX1,2:1.74165419776;RFX1:1.64355882103;CUX2:1.61999395149;NKX2-1,4:1.55226481809;POU5F1:1.52207068311;SOX{8,9,10}:1.52040326273;CDC5L:1.51963622213;STAT1,3:1.49064680128;EGR1..3:1.49031477055;PBX1:1.48880767643;SPZ1:1.47596954456;HAND1,2:1.46736973839;JUN:1.45425027313;RBPJ:1.4380684454;MED-1{core}:1.40906202081;MAZ:1.37963549353;GTF2I:1.37515471727;ZBTB6:1.37107187296;HIC1:1.36313709014;DBP:1.25173552455;PATZ1:1.23256007412;RREB1:1.23111706531;ZNF384:1.22506616406;GFI1B:1.19238564044;PRDM1:1.14396851406;TFAP2B:1.07976259378;GATA4:1.03834633443;SMAD1..7,9:0.990353214642;YY1:0.980321496325;PAX6:0.954895863967;POU6F1:0.944222639324;ZIC1..3:0.938188572876;E2F1..5:0.91229803543;RFX2..5_RFXANK_RFXAP:0.902432382313;KLF4:0.868445279304;ALX1:0.858657307908;EBF1:0.855673812723;FOXM1:0.842289230801;HOX{A4,D4}:0.841955497138;ADNP_IRX_SIX_ZHX:0.831718449874;BPTF:0.827491938592;NR3C1:0.814260096623;CRX:0.809907143819;REST:0.747433042348;TEF:0.733564926133;TFCP2:0.730458195681;NRF1:0.726694999856;PAX4:0.706251462673;IKZF1:0.706126740658;GZF1:0.682098766163;POU3F1..4:0.674676432659;EP300:0.659275919839;NFY{A,B,C}:0.641686734317;BREu{core}:0.640294721517;TGIF1:0.633906955218;NR1H4:0.6087269291;GCM1,2:0.599021649965;ONECUT1,2:0.598049416929;ATF2:0.594157444974;TLX1..3_NFIC{dimer}:0.589350138458;GTF2A1,2:0.56341042693;ZNF423:0.540680181666;ZNF143:0.530442017305;PAX3,7:0.478760645533;SOX5:0.470545764804;AHR_ARNT_ARNT2:0.449627698945;HSF1,2:0.396843249671;HOXA9_MEIS1:0.365894123105;FOXN1:0.354958500822;PDX1:0.347800021818;MYB:0.325921275858;NKX3-2:0.31729778833;NFE2L2:0.272889640994;NANOG{mouse}:0.2649477524;FOXP3:0.249936483282;MYBL2:0.24895704448;NFE2L1:0.247338088974;RORA:0.226625246002;TLX2:0.2060302155;NFIX:0.204309702074;LMO2:0.194843075866;ELK1,4_GABP{A,B1}:0.159938840216;HBP1_HMGB_SSRP1_UBTF:0.159384259375;PAX1,9:0.155435503713;TOPORS:0.150915480208;TFAP2{A,C}:0.127209912958;MYOD1:0.110378439685;XCPE1{core}:0.0917630659743;MTF1:0.0904777741077;HOX{A5,B5}:0.0854784352603;FOXD3:0.0707577473396;CREB1:0.0471387061914;MAFB:0.0390303412758;UFEwm:0.0350813924913;TBX4,5:0.0234712643571;TP53:0.00912241888313;STAT2,4,6:-0.00316673163496;HMX1:-0.011172793339;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0155517814305;NFIL3:-0.029875556221;AR:-0.0382916734939;IKZF2:-0.0857231259124;SREBF1,2:-0.101354934669;HNF1A:-0.137868134751;EVI1:-0.143300506321;NFE2:-0.181759839464;CDX1,2,4:-0.184758063211;NKX2-2,8:-0.207806708228;FOS_FOS{B,L1}_JUN{B,D}:-0.210079107298;FOXP1:-0.232279353263;ATF4:-0.240610933129;NFATC1..3:-0.257157136154;POU2F1..3:-0.257369193117;POU1F1:-0.268634060533;HNF4A_NR2F1,2:-0.273371507219;BACH2:-0.281453520452;TFAP4:-0.283548371357;DMAP1_NCOR{1,2}_SMARC:-0.292984437662;TBP:-0.336339288394;FOSL2:-0.349901021927;MEF2{A,B,C,D}:-0.386618180139;ESRRA:-0.38852551413;FOXQ1:-0.403247892137;TEAD1:-0.411404935231;ALX4:-0.417726943936;SP1:-0.427207120165;SPIB:-0.43953207009;ELF1,2,4:-0.468434254084;RUNX1..3:-0.47038574292;FOX{D1,D2}:-0.472916699432;ZNF238:-0.491663703526;ATF5_CREB3:-0.498768177291;IRF1,2:-0.510454341688;NR6A1:-0.515846969975;EN1,2:-0.524596726848;NFKB1_REL_RELA:-0.532424942942;GATA6:-0.554952566018;SPI1:-0.577826168395;HMGA1,2:-0.633077815962;ZBTB16:-0.710983857583;PAX2:-0.727747218252;ZNF148:-0.730165173554;SRF:-0.74154253112;IRF7:-0.752256449074;HLF:-0.758169881122;FOX{I1,J2}:-0.768036545455;CEBPA,B_DDIT3:-0.783532575951;bHLH_family:-0.784305022602;FOXA2:-0.784802744445;FOXL1:-0.792346314898;FOX{F1,F2,J1}:-0.807061965593;XBP1:-0.810753091667;ARID5B:-0.827319956722;RXR{A,B,G}:-0.829928387452;ETS1,2:-0.850521484484;HOX{A6,A7,B6,B7}:-0.861966281158;STAT5{A,B}:-0.869034761405;ESR1:-0.885844234579;PPARG:-0.895476849047;SNAI1..3:-0.921858764496;FOXO1,3,4:-1.04365693081;NR5A1,2:-1.07623794714;PITX1..3:-1.09029374828;TAL1_TCF{3,4,12}:-1.10421781094;ATF6:-1.10430672238;ZEB1:-1.11227739523;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.15236042588;HES1:-1.25225562973;RXRA_VDR{dimer}:-1.27833387475;AIRE:-1.47819833318;GLI1..3:-1.61155061464;HIF1A:-1.72972142455;NKX3-1:-1.86838138186 | |top_motifs=SOX2:3.66571068404;NKX2-3_NKX2-5:3.06998979594;NANOG:2.67442529317;TFDP1:2.66160994633;OCT4_SOX2{dimer}:2.5288807038;LHX3,4:2.34653633445;NKX6-1,2:2.28296011166;MZF1:2.24368282868;SOX17:2.24020477599;MYFfamily:2.18492828658;GFI1:2.10544568573;MTE{core}:2.07802644338;PRRX1,2:2.06240658081;LEF1_TCF7_TCF7L1,2:2.03262860607;PAX8:1.90199128316;ZFP161:1.87774852365;T:1.84457358013;PAX5:1.84256204199;NHLH1,2:1.77394501268;VSX1,2:1.74165419776;RFX1:1.64355882103;CUX2:1.61999395149;NKX2-1,4:1.55226481809;POU5F1:1.52207068311;SOX{8,9,10}:1.52040326273;CDC5L:1.51963622213;STAT1,3:1.49064680128;EGR1..3:1.49031477055;PBX1:1.48880767643;SPZ1:1.47596954456;HAND1,2:1.46736973839;JUN:1.45425027313;RBPJ:1.4380684454;MED-1{core}:1.40906202081;MAZ:1.37963549353;GTF2I:1.37515471727;ZBTB6:1.37107187296;HIC1:1.36313709014;DBP:1.25173552455;PATZ1:1.23256007412;RREB1:1.23111706531;ZNF384:1.22506616406;GFI1B:1.19238564044;PRDM1:1.14396851406;TFAP2B:1.07976259378;GATA4:1.03834633443;SMAD1..7,9:0.990353214642;YY1:0.980321496325;PAX6:0.954895863967;POU6F1:0.944222639324;ZIC1..3:0.938188572876;E2F1..5:0.91229803543;RFX2..5_RFXANK_RFXAP:0.902432382313;KLF4:0.868445279304;ALX1:0.858657307908;EBF1:0.855673812723;FOXM1:0.842289230801;HOX{A4,D4}:0.841955497138;ADNP_IRX_SIX_ZHX:0.831718449874;BPTF:0.827491938592;NR3C1:0.814260096623;CRX:0.809907143819;REST:0.747433042348;TEF:0.733564926133;TFCP2:0.730458195681;NRF1:0.726694999856;PAX4:0.706251462673;IKZF1:0.706126740658;GZF1:0.682098766163;POU3F1..4:0.674676432659;EP300:0.659275919839;NFY{A,B,C}:0.641686734317;BREu{core}:0.640294721517;TGIF1:0.633906955218;NR1H4:0.6087269291;GCM1,2:0.599021649965;ONECUT1,2:0.598049416929;ATF2:0.594157444974;TLX1..3_NFIC{dimer}:0.589350138458;GTF2A1,2:0.56341042693;ZNF423:0.540680181666;ZNF143:0.530442017305;PAX3,7:0.478760645533;SOX5:0.470545764804;AHR_ARNT_ARNT2:0.449627698945;HSF1,2:0.396843249671;HOXA9_MEIS1:0.365894123105;FOXN1:0.354958500822;PDX1:0.347800021818;MYB:0.325921275858;NKX3-2:0.31729778833;NFE2L2:0.272889640994;NANOG{mouse}:0.2649477524;FOXP3:0.249936483282;MYBL2:0.24895704448;NFE2L1:0.247338088974;RORA:0.226625246002;TLX2:0.2060302155;NFIX:0.204309702074;LMO2:0.194843075866;ELK1,4_GABP{A,B1}:0.159938840216;HBP1_HMGB_SSRP1_UBTF:0.159384259375;PAX1,9:0.155435503713;TOPORS:0.150915480208;TFAP2{A,C}:0.127209912958;MYOD1:0.110378439685;XCPE1{core}:0.0917630659743;MTF1:0.0904777741077;HOX{A5,B5}:0.0854784352603;FOXD3:0.0707577473396;CREB1:0.0471387061914;MAFB:0.0390303412758;UFEwm:0.0350813924913;TBX4,5:0.0234712643571;TP53:0.00912241888313;STAT2,4,6:-0.00316673163496;HMX1:-0.011172793339;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0155517814305;NFIL3:-0.029875556221;AR:-0.0382916734939;IKZF2:-0.0857231259124;SREBF1,2:-0.101354934669;HNF1A:-0.137868134751;EVI1:-0.143300506321;NFE2:-0.181759839464;CDX1,2,4:-0.184758063211;NKX2-2,8:-0.207806708228;FOS_FOS{B,L1}_JUN{B,D}:-0.210079107298;FOXP1:-0.232279353263;ATF4:-0.240610933129;NFATC1..3:-0.257157136154;POU2F1..3:-0.257369193117;POU1F1:-0.268634060533;HNF4A_NR2F1,2:-0.273371507219;BACH2:-0.281453520452;TFAP4:-0.283548371357;DMAP1_NCOR{1,2}_SMARC:-0.292984437662;TBP:-0.336339288394;FOSL2:-0.349901021927;MEF2{A,B,C,D}:-0.386618180139;ESRRA:-0.38852551413;FOXQ1:-0.403247892137;TEAD1:-0.411404935231;ALX4:-0.417726943936;SP1:-0.427207120165;SPIB:-0.43953207009;ELF1,2,4:-0.468434254084;RUNX1..3:-0.47038574292;FOX{D1,D2}:-0.472916699432;ZNF238:-0.491663703526;ATF5_CREB3:-0.498768177291;IRF1,2:-0.510454341688;NR6A1:-0.515846969975;EN1,2:-0.524596726848;NFKB1_REL_RELA:-0.532424942942;GATA6:-0.554952566018;SPI1:-0.577826168395;HMGA1,2:-0.633077815962;ZBTB16:-0.710983857583;PAX2:-0.727747218252;ZNF148:-0.730165173554;SRF:-0.74154253112;IRF7:-0.752256449074;HLF:-0.758169881122;FOX{I1,J2}:-0.768036545455;CEBPA,B_DDIT3:-0.783532575951;bHLH_family:-0.784305022602;FOXA2:-0.784802744445;FOXL1:-0.792346314898;FOX{F1,F2,J1}:-0.807061965593;XBP1:-0.810753091667;ARID5B:-0.827319956722;RXR{A,B,G}:-0.829928387452;ETS1,2:-0.850521484484;HOX{A6,A7,B6,B7}:-0.861966281158;STAT5{A,B}:-0.869034761405;ESR1:-0.885844234579;PPARG:-0.895476849047;SNAI1..3:-0.921858764496;FOXO1,3,4:-1.04365693081;NR5A1,2:-1.07623794714;PITX1..3:-1.09029374828;TAL1_TCF{3,4,12}:-1.10421781094;ATF6:-1.10430672238;ZEB1:-1.11227739523;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.15236042588;HES1:-1.25225562973;RXRA_VDR{dimer}:-1.27833387475;AIRE:-1.47819833318;GLI1..3:-1.61155061464;HIF1A:-1.72972142455;NKX3-1:-1.86838138186 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11275-116H6;search_select_hide=table117:FF:11275-116H6 | |||
}} | }} | ||
Latest revision as of 16:30, 3 June 2020
| Name: | Neural stem cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11063 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11063
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11063
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0429 |
| 10 | 10 | 0.0934 |
| 100 | 100 | 0.36 |
| 101 | 101 | 0.734 |
| 102 | 102 | 0.73 |
| 103 | 103 | 0.227 |
| 104 | 104 | 0.133 |
| 105 | 105 | 0.565 |
| 106 | 106 | 0.129 |
| 107 | 107 | 0.693 |
| 108 | 108 | 0.591 |
| 109 | 109 | 0.00328 |
| 11 | 11 | 0.0151 |
| 110 | 110 | 0.0823 |
| 111 | 111 | 0.0477 |
| 112 | 112 | 0.0984 |
| 113 | 113 | 0.82 |
| 114 | 114 | 0.00799 |
| 115 | 115 | 0.749 |
| 116 | 116 | 0.356 |
| 117 | 117 | 0.0185 |
| 118 | 118 | 0.0934 |
| 119 | 119 | 0.0875 |
| 12 | 12 | 0.892 |
| 120 | 120 | 0.961 |
| 121 | 121 | 0.557 |
| 122 | 122 | 0.653 |
| 123 | 123 | 0.247 |
| 124 | 124 | 0.196 |
| 125 | 125 | 0.895 |
| 126 | 126 | 0.113 |
| 127 | 127 | 0.068 |
| 128 | 128 | 0.708 |
| 129 | 129 | 0.417 |
| 13 | 13 | 0.0182 |
| 130 | 130 | 0.467 |
| 131 | 131 | 0.727 |
| 132 | 132 | 0.742 |
| 133 | 133 | 0.251 |
| 134 | 134 | 0.693 |
| 135 | 135 | 0.791 |
| 136 | 136 | 0.106 |
| 137 | 137 | 0.535 |
| 138 | 138 | 0.396 |
| 139 | 139 | 0.0176 |
| 14 | 14 | 0.794 |
| 140 | 140 | 0.143 |
| 141 | 141 | 0.661 |
| 142 | 142 | 0.501 |
| 143 | 143 | 0.0266 |
| 144 | 144 | 0.777 |
| 145 | 145 | 0.865 |
| 146 | 146 | 0.665 |
| 147 | 147 | 0.865 |
| 148 | 148 | 0.269 |
| 149 | 149 | 0.309 |
| 15 | 15 | 0.063 |
| 150 | 150 | 0.321 |
| 151 | 151 | 0.503 |
| 152 | 152 | 0.075 |
| 153 | 153 | 0.951 |
| 154 | 154 | 0.64 |
| 155 | 155 | 0.0918 |
| 156 | 156 | 0.159 |
| 157 | 157 | 0.706 |
| 158 | 158 | 0.639 |
| 159 | 159 | 0.326 |
| 16 | 16 | 0.0786 |
| 160 | 160 | 0.086 |
| 161 | 161 | 0.0764 |
| 162 | 162 | 0.709 |
| 163 | 163 | 0.88 |
| 164 | 164 | 0.00592 |
| 165 | 165 | 0.615 |
| 166 | 166 | 0.922 |
| 167 | 167 | 0.397 |
| 168 | 168 | 0.599 |
| 169 | 169 | 0.0133 |
| 17 | 17 | 0.073 |
| 18 | 18 | 0.36 |
| 19 | 19 | 0.29 |
| 2 | 2 | 0.812 |
| 20 | 20 | 0.264 |
| 21 | 21 | 0.125 |
| 22 | 22 | 0.245 |
| 23 | 23 | 0.298 |
| 24 | 24 | 0.611 |
| 25 | 25 | 0.539 |
| 26 | 26 | 0.018 |
| 27 | 27 | 0.64 |
| 28 | 28 | 0.878 |
| 29 | 29 | 0.0367 |
| 3 | 3 | 0.04 |
| 30 | 30 | 0.813 |
| 31 | 31 | 0.935 |
| 32 | 32 | 0.0237 |
| 33 | 33 | 0.286 |
| 34 | 34 | 0.693 |
| 35 | 35 | 0.764 |
| 36 | 36 | 0.0843 |
| 37 | 37 | 0.0342 |
| 38 | 38 | 0.117 |
| 39 | 39 | 0.549 |
| 4 | 4 | 0.968 |
| 40 | 40 | 0.0282 |
| 41 | 41 | 0.601 |
| 42 | 42 | 0.181 |
| 43 | 43 | 0.162 |
| 44 | 44 | 0.0819 |
| 45 | 45 | 0.867 |
| 46 | 46 | 0.102 |
| 47 | 47 | 0.042 |
| 48 | 48 | 0.067 |
| 49 | 49 | 0.122 |
| 5 | 5 | 0.257 |
| 50 | 50 | 0.581 |
| 51 | 51 | 0.497 |
| 52 | 52 | 0.732 |
| 53 | 53 | 0.721 |
| 54 | 54 | 0.379 |
| 55 | 55 | 0.409 |
| 56 | 56 | 0.411 |
| 57 | 57 | 0.289 |
| 58 | 58 | 0.148 |
| 59 | 59 | 0.111 |
| 6 | 6 | 0.558 |
| 60 | 60 | 0.135 |
| 61 | 61 | 0.0339 |
| 62 | 62 | 0.11 |
| 63 | 63 | 0.166 |
| 64 | 64 | 0.185 |
| 65 | 65 | 0.0949 |
| 66 | 66 | 0.972 |
| 67 | 67 | 0.561 |
| 68 | 68 | 0.5 |
| 69 | 69 | 0.554 |
| 7 | 7 | 0.27 |
| 70 | 70 | 0.0204 |
| 71 | 71 | 0.0358 |
| 72 | 72 | 0.494 |
| 73 | 73 | 0.0223 |
| 74 | 74 | 0.231 |
| 75 | 75 | 0.0235 |
| 76 | 76 | 0.236 |
| 77 | 77 | 0.064 |
| 78 | 78 | 0.0449 |
| 79 | 79 | 0.347 |
| 8 | 8 | 0.102 |
| 80 | 80 | 0.915 |
| 81 | 81 | 0.479 |
| 82 | 82 | 0.263 |
| 83 | 83 | 0.743 |
| 84 | 84 | 0.642 |
| 85 | 85 | 0.0926 |
| 86 | 86 | 0.402 |
| 87 | 87 | 0.0644 |
| 88 | 88 | 0.933 |
| 89 | 89 | 0.562 |
| 9 | 9 | 0.568 |
| 90 | 90 | 0.599 |
| 91 | 91 | 0.978 |
| 92 | 92 | 0.139 |
| 93 | 93 | 0.299 |
| 94 | 94 | 0.0825 |
| 95 | 95 | 0.0115 |
| 96 | 96 | 0.922 |
| 97 | 97 | 0.801 |
| 98 | 98 | 0.0948 |
| 99 | 99 | 0.911 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11063
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000120 human neural stem cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000047 (neuronal stem cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000120 (human neural stem cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)
