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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0000073,UBERON:0004121,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0001017,UBERON:0001016,UBERON:0000924,UBERON:0005743,UBERON:0006601
|DRA_sample_Accession=CAGE@SAMD00005090
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000047,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002321,CL:0002371,CL:0002319,CL:0000221,CL:0000220,CL:0000004,CL:0000255,CL:0000133
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005090
|accession_numbers=CAGE;DRX008373;DRR009245;DRZ000670;DRZ002055;DRZ012020;DRZ013405
|accession_numbers_RNASeq=sRNA-Seq;DRX037175;DRR041541;DRZ007183
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004121,UBERON:0011216,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000047,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002371,CL:0002319,CL:0000255,CL:0000034
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000120
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr15:57511609..57511651,+!p2@TCF12!2.44!446.95!TCF12;;chr4:57547454..57547469,-!p1@HOPX!2.42!264.26!HOPX;;chr1:23696348..23696363,-!p4@ZNF436!2.40!282.81!ZNF436;;chr14:29234581..29234601,+!p2@FOXG1!2.36!229.19!FOXG1;;chr3:181429704..181429722,+!p1@SOX2!2.34!216.23!SOX2;;chrX:25034067..25034088,-!p1@ARX!2.23!168.72!ARX;;chr9:126774018..126774055,+!p1@LHX2!2.19!153.73!LHX2;;chr14:29235961..29236008,+!p1@FOXG1!2.18!150.42!FOXG1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.14!135.94!POU3F3;;chr16:51185172..51185197,-!p1@SALL1!2.08!117.90!SALL1;;chr14:29236269..29236285,+!p3@FOXG1!2.02!103.16!FOXG1;;chr3:181429741..181429767,+!p2@SOX2!2.01!101.13!SOX2;;chr7:100065686..100065701,-!p2@TSC22D4!1.96!90.71!TSC22D4;;chr11:31832658..31832681,-!p1@PAX6!1.91!80.55!PAX6;;chr1:23696308..23696339,-!p2@ZNF436!1.89!158.05!ZNF436;;chr2:63277948..63277974,+!p1@OTX1!1.86!71.15!OTX1;;chr14:33403881..33403924,+!p1@NPAS3!1.78!59.71!NPAS3;;chr8:40755333..40755352,-!p1@ZMAT4!1.78!58.70!ZMAT4;;chr7:14028743..14028799,-!p3@ETV1!1.73!66.06!ETV1;;chr9:126774058..126774081,+!p3@LHX2!1.68!47.01!LHX2;;chr9:126773880..126773895,+!p2@LHX2!1.68!46.50!LHX2;;chr4:57547751..57547764,-!p6@HOPX!1.67!45.48!HOPX;;chr17:70117153..70117174,+!p1@SOX9!1.66!434.50!SOX9;;chr3:147127142..147127168,+!p1@ZIC1!1.64!42.94!ZIC1;;chr12:103351444..103351461,+!p1@ASCL1!1.63!41.67!ASCL1;;chr6:19837592..19837621,+!p1@ID4!1.61!232.50!ID4;;chr20:20348740..20348757,+!p1@INSM1!1.60!39.13!INSM1;;chr13:95364784..95364806,-!p1@SOX21!1.58!37.10!SOX21;;chr12:106976774..106976788,+!p1@RFX4!1.57!35.83!RFX4;;chr14:29236301..29236317,+!p5@FOXG1!1.56!35.32!FOXG1;;chr1:42384532..42384603,-!p2@HIVEP3!1.56!35.32!HIVEP3;;chrX:82763292..82763317,+!p1@POU3F4!1.55!34.30!POU3F4;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.54!34.05!POU3F3;;chr21:34442439..34442455,+!p1@OLIG1!1.53!32.52!OLIG1;;chr13:72441315..72441454,-!p1@DACH1!1.52!63.52!DACH1;;chr1:151032922..151032951,+!p2@MLLT11!1.51!51.84!MLLT11;;chr1:50889103..50889145,-!p1@DMRTA2!1.49!30.24!DMRTA2;;chr16:51185318..51185348,-!p2@SALL1!1.48!28.97!SALL1;;chr2:63277978..63277995,+!p2@OTX1!1.47!28.46!OTX1;;chr13:100634031..100634045,+!p1@ZIC2!1.46!27.95!ZIC2;;chr18:53068911..53068935,-!p4@TCF4!1.45!30.75!TCF4;;chr21:34398234..34398250,+!p1@OLIG2!1.43!25.92!OLIG2;;chr1:214161272..214161322,+!p1@PROX1!1.41!34.56!PROX1;;chr10:119302232..119302265,+!p1@EMX2!1.41!24.90!EMX2;;chr12:106976837..106976850,+!p5@RFX4!1.41!24.65!RFX4;;chr3:147127177..147127194,+!p2@ZIC1!1.41!24.65!ZIC1;;chr7:14028488..14028516,-!p2@ETV1!1.39!25.66!ETV1;;chr7:96654133..96654150,-!p1@DLX5!1.39!23.63!DLX5;;chr1:2461692..2461710,-!p1@HES5!1.38!22.87!HES5;;chr7:42276787..42276815,-!p1@GLI3!1.35!55.65!GLI3;;chr19:13134772..13134822,+!p2@NFIX!1.33!29.47!NFIX;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.33!20.58!PEG3;;chr1:2985760..2985774,+!p1@PRDM16!1.33!20.58!PRDM16;;chr9:126774091..126774098,+!p4@LHX2!1.33!20.58!LHX2;;chr12:24102576..24102623,-!p2@SOX5!1.33!20.33!SOX5;;chr11:31832862..31832884,-!p2@PAX6!1.32!19.82!PAX6;;chr13:72441074..72441172,-!p2@DACH1!1.32!19.82!DACH1;;chr15:42749722..42749739,-!p2@ZFP106!1.31!34.81!ZFP106;;chr15:80696703..80696754,+!p1@ARNT2!1.31!25.66!ARNT2;;chr13:100623375..100623425,-!p1@ZIC5!1.31!19.31!ZIC5;;chr7:14029283..14029311,-!p1@ETV1!1.29!96.30!ETV1;;chr2:172949484..172949522,+!p1@DLX1!1.29!18.55!DLX1;;chr12:103352277..103352324,+!p2@ASCL1!1.29!18.29!ASCL1;;chr9:14314131..14314147,-!p2@NFIB!1.28!98.08!NFIB;;chr11:31832610..31832639,-!p5@PAX6!1.28!18.04!PAX6;;chr14:29237009..29237049,+!p4@FOXG1!1.28!18.04!FOXG1;;chr12:106976678..106976708,+!p2@RFX4!1.27!17.53!RFX4;;chr6:99282592..99282616,+!p3@POU3F2!1.27!17.53!POU3F2;;chr8:60031682..60031710,-!p2@TOX!1.25!26.93!TOX;;chr21:34442540..34442560,+!p2@OLIG1!1.24!16.26!OLIG1;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.24!16.26!POU3F3;;chr2:172967621..172967637,-!p1@DLX2!1.23!42.43!DLX2;;chr4:57522598..57522664,-!p3@HOPX!1.23!16.01!HOPX;;chr18:42260920..42260951,+!p4@SETBP1!1.22!15.75!SETBP1;;chr7:20826504..20826526,-!p1@SP8!1.21!15.25!SP8;;chr10:119303078..119303169,+!p2@EMX2!1.21!15.25!EMX2;;chr7:14026022..14026044,-!p7@ETV1!1.20!14.74!ETV1;;chr7:14029312..14029325,-!p4@ETV1!1.19!18.04!ETV1;;chr1:23696448..23696453,-!p5@ZNF436!1.18!17.28!ZNF436;;chr9:77112244..77112262,+!p1@RORB!1.18!15.75!RORB;;chr10:31610110..31610159,+!p2@ZEB1!1.18!14.23!ZEB1;;chr11:31832807..31832823,-!p4@PAX6!1.18!14.23!PAX6;;chr11:31839488..31839515,-!p3@PAX6!1.18!14.23!PAX6;;chr2:5832508..5832524,+!p1@SOX11!1.18!13.98!SOX11;;chr16:1031762..1031781,+!p1@SOX8!1.18!13.98!SOX8;;chr14:73360799..73360817,-!p1@DPF3!1.17!47.77!DPF3;;chr8:80679993..80680011,-!p1@HEY1!1.17!19.82!HEY1;;chr18:42260840..42260860,+!p2@SETBP1!1.17!13.72!SETBP1;;chr1:61548374..61548415,+!p4@NFIA!1.14!23.88!NFIA;;chr15:57511589..57511608,+!p4@TCF12!1.14!12.96!TCF12;;chr20:55204351..55204377,+!p1@TFAP2C!1.13!15.75!TFAP2C;;chr6:126070769..126070801,+!p1@HEY2!1.13!14.48!HEY2;;chr1:151032860..151032918,+!p1@MLLT11!1.12!143.31!MLLT11;;chr14:21994337..21994442,-!p1@SALL2!1.11!33.29!SALL2;;chr8:60031934..60031986,-!p6@TOX!1.09!11.43!TOX;;chr5:88081308..88081333,-!p8@MEF2C!1.09!11.18!MEF2C;;chr6:99282570..99282591,+!p4@POU3F2!1.09!11.18!POU3F2;;chr4:57547870..57547873,-!p11@HOPX!1.09!11.18!HOPX;;chr8:60031619..60031676,-!p1@TOX!1.08!23.88!TOX;;chrX:84498989..84499003,+!p1@ZNF711!1.08!15.25!ZNF711;;chr3:185826855..185826911,-!p1@ETV5!1.07!295.51!ETV5;;chr3:147111231..147111281,+!p3@ZIC1!1.07!10.67!ZIC1;;chr4:57522513..57522548,-!p4@HOPX!1.07!10.67!HOPX;;chr13:95364761..95364780,-!p2@SOX21!1.07!10.67!SOX21;;chr11:31832687..31832704,-!p6@PAX6!1.06!10.42!PAX6;;chr13:112721457..112721482,+!p1@SOX1!1.06!10.42!SOX1;;chr7:14026063..14026091,-!p10@ETV1!1.06!10.42!ETV1;;chr1:167298300..167298319,+!p2@POU2F1!1.05!10.16!POU2F1;;chr10:31608127..31608156,+!p1@ZEB1!1.04!184.22!ZEB1;;chr1:61330997..61331017,+!p17@NFIA!1.04!9.91!NFIA;;chr10:119302645..119302712,+!p3@EMX2!1.03!9.66!EMX2;;chr17:47892398..47892407,+!p2@KAT7!1.03!9.66!KAT7;;chr7:28725740..28725778,+!p1@CREB5!1.02!85.63!CREB5;;chr7:42192043..42192057,-!p10@GLI3!1.02!9.40!GLI3;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!1.02!9.40!POU3F3;;chr2:105470714..105470723,+!p@chr2:105470714..105470723,+!1.02!9.40!POU3F3;;chr8:77593474..77593612,+!p1@ZFHX4!1.01!39.89!ZFHX4;;chr2:172950227..172950249,+!p2@DLX1!1.01!9.15!DLX1;;chr3:21792682..21792720,-!p1@ZNF385D!1.01!9.15!ZNF385D;;chr4:57547820..57547829,-!p8@HOPX!1.01!9.15!HOPX;;chr14:33403648..33403710,+!p3@NPAS3!1.01!9.15!NPAS3;;chr11:31832581..31832601,-!p7@PAX6!1.00!8.89!PAX6;;chr6:99282475..99282501,+!p1@POU3F2!1.00!8.89!POU3F2;;chr19:19976683..19976709,+!p1@ZNF253!0.99!39.38!ZNF253;;chrX:84499081..84499115,+!p2@ZNF711!0.99!13.21!ZNF711;;chr18:22932080..22932170,-!p1@ZNF521!0.98!37.35!ZNF521;;chr16:51185149..51185160,-!p5@SALL1!0.98!8.64!SALL1;;chr1:42384486..42384501,-!p6@HIVEP3!0.98!8.64!HIVEP3;;chr11:16627528..16627550,-!p7@SOX6!0.98!8.64!SOX6;;chr11:16627614..16627651,-!p4@SOX6!0.98!8.64!SOX6;;chr14:29236510..29236521,+!p9@FOXG1!0.98!8.64!FOXG1;;chr18:56531584..56531646,+!p4@ZNF532!0.97!11.18!ZNF532;;chr14:29236460..29236467,+!p12@FOXG1!0.97!8.39!FOXG1;;chr7:14025816..14025842,-!p9@ETV1!0.97!8.39!ETV1;;chr15:37392724..37392757,-!p1@MEIS2!0.96!38.11!MEIS2;;chr17:41623692..41623715,-!p1@ETV4!0.96!35.83!ETV4;;chr6:99283040..99283063,+!p5@POU3F2!0.96!8.13!POU3F2;;chrX:136648279..136648295,+!p1@ZIC3!0.96!8.13!ZIC3;;chr1:151032957..151032968,+!p7@MLLT11!0.96!8.13!MLLT11;;chr12:24103844..24103880,-!p3@SOX5!0.96!8.13!SOX5;;chr18:56532100..56532130,+!p1@ZNF532!0.95!14.74!ZNF532;;chr12:125003087..125003141,-!p4@NCOR2!0.95!10.16!NCOR2;;chrX:136648643..136648711,+!p2@ZIC3!0.95!7.88!ZIC3;;chr7:14025855..14025890,-!p6@ETV1!0.95!7.88!ETV1;;chr2:5832493..5832507,+!p2@SOX11!0.95!7.88!SOX11;;chr19:22034809..22034878,-!p2@ZNF43!0.94!28.20!ZNF43;;chr6:91006518..91006570,-!p1@BACH2!0.94!18.29!BACH2;;chr12:24715376..24715432,-!p1@SOX5!0.94!9.91!SOX5;;chr13:100634004..100634025,+!p2@ZIC2!0.94!7.62!ZIC2;;chr13:28366616..28366622,+!p1@GSX1!0.94!7.62!GSX1;;chr9:14313893..14313908,-!p7@NFIB!0.93!10.93!NFIB;;chr1:164528687..164528711,+!p6@PBX1!0.93!8.89!PBX1;;chr1:23857325..23857416,-!p2@E2F2!0.92!8.64!E2F2;;chr4:57522166..57522260,-!p2@HOPX!0.92!8.39!HOPX;;chr3:114173720..114173794,-!p6@ZBTB20!0.92!7.37!ZBTB20;;chr20:55205825..55205847,+!p2@TFAP2C!0.92!7.37!TFAP2C;;chrX:139587228..139587234,-!p1@SOX3!0.92!7.37!SOX3;;chr9:14314106..14314119,-!p5@NFIB!0.91!13.21!NFIB;;chr3:114173654..114173696,-!p12@ZBTB20!0.91!7.11!ZBTB20;;chr4:57547773..57547780,-!p12@HOPX!0.91!7.11!HOPX;;chr19:58545454..58545498,+!p1@ZSCAN1!0.91!7.11!ZSCAN1;;chr7:42276822..42276895,-!p2@GLI3!0.90!21.60!GLI3;;chr1:61547894..61547968,+!p2@NFIA!0.90!21.09!NFIA;;chr2:25475120..25475176,-!p2@DNMT3A!0.90!9.40!DNMT3A;;chr6:99282438..99282457,+!p2@POU3F2!0.90!6.86!POU3F2;;chr10:119302268..119302282,+!p4@EMX2!0.90!6.86!EMX2;;chr19:57352109..57352153,-!p2@ZIM2!0.90!6.86!ZIM2;;chr19:23299851..23299880,+!p2@ZNF730!0.90!6.86!ZNF730;;chr14:21994449..21994524,-!p2@SALL2!0.89!20.84!SALL2;;chr12:26277817..26277863,-!p2@BHLHE41!0.89!9.40!BHLHE41;;chr19:23433144..23433204,-!p1@ZNF724P!0.88!30.75!ZNF724P;;chr19:38720294..38720348,-!p1@DPF1!0.88!8.39!DPF1;;chrX:82763265..82763283,+!p2@POU3F4!0.88!6.61!POU3F4;;chr14:33403860..33403874,+!p5@NPAS3!0.88!6.61!NPAS3;;chr6:21593973..21593988,+!p1@SOX4!0.87!244.95!SOX4;;chr14:33403930..33403943,+!p7@NPAS3!0.87!6.35!NPAS3;;chr1:40105299..40105326,-!p1@HEYL!0.87!6.35!HEYL;;chr3:181429641..181429650,+!p3@SOX2!0.87!6.35!SOX2;;chr9:14308004..14308041,-!p14@NFIB!0.87!6.35!NFIB;;chr1:59249732..59249749,-!p2@JUN!0.86!80.80!JUN;;chr11:16629261..16629284,-!p1@SOX6!0.85!6.10!SOX6;;chr22:38380543..38380569,-!p1@SOX10!0.85!6.10!SOX10;;chr18:22932004..22932021,-!p2@ZNF521!0.85!6.10!ZNF521;;chr19:13135582..13135600,+!p3@NFIX!0.85!6.10!NFIX;;chr5:88178983..88179012,-!p1@MEF2C!0.84!49.04!MEF2C;;chr5:124082279..124082319,-!p3@ZNF6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|expression_enrichment_score=chr15:57511609..57511651,+!p2@TCF12!2.44!446.95!TCF12;;chr4:57547454..57547469,-!p1@HOPX!2.42!264.26!HOPX;;chr1:23696348..23696363,-!p4@ZNF436!2.40!282.81!ZNF436;;chr14:29234581..29234601,+!p2@FOXG1!2.36!229.19!FOXG1;;chr3:181429704..181429722,+!p1@SOX2!2.34!216.23!SOX2;;chrX:25034067..25034088,-!p1@ARX!2.23!168.72!ARX;;chr9:126774018..126774055,+!p1@LHX2!2.19!153.73!LHX2;;chr14:29235961..29236008,+!p1@FOXG1!2.18!150.42!FOXG1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.14!135.94!POU3F3;;chr16:51185172..51185197,-!p1@SALL1!2.08!117.90!SALL1;;chr14:29236269..29236285,+!p3@FOXG1!2.02!103.16!FOXG1;;chr3:181429741..181429767,+!p2@SOX2!2.01!101.13!SOX2;;chr7:100065686..100065701,-!p2@TSC22D4!1.96!90.71!TSC22D4;;chr11:31832658..31832681,-!p1@PAX6!1.91!80.55!PAX6;;chr1:23696308..23696339,-!p2@ZNF436!1.89!158.05!ZNF436;;chr2:63277948..63277974,+!p1@OTX1!1.86!71.15!OTX1;;chr14:33403881..33403924,+!p1@NPAS3!1.78!59.71!NPAS3;;chr8:40755333..40755352,-!p1@ZMAT4!1.78!58.70!ZMAT4;;chr7:14028743..14028799,-!p3@ETV1!1.73!66.06!ETV1;;chr9:126774058..126774081,+!p3@LHX2!1.68!47.01!LHX2;;chr9:126773880..126773895,+!p2@LHX2!1.68!46.50!LHX2;;chr4:57547751..57547764,-!p6@HOPX!1.67!45.48!HOPX;;chr17:70117153..70117174,+!p1@SOX9!1.66!434.50!SOX9;;chr3:147127142..147127168,+!p1@ZIC1!1.64!42.94!ZIC1;;chr12:103351444..103351461,+!p1@ASCL1!1.63!41.67!ASCL1;;chr6:19837592..19837621,+!p1@ID4!1.61!232.50!ID4;;chr20:20348740..20348757,+!p1@INSM1!1.60!39.13!INSM1;;chr13:95364784..95364806,-!p1@SOX21!1.58!37.10!SOX21;;chr12:106976774..106976788,+!p1@RFX4!1.57!35.83!RFX4;;chr14:29236301..29236317,+!p5@FOXG1!1.56!35.32!FOXG1;;chr1:42384532..42384603,-!p2@HIVEP3!1.56!35.32!HIVEP3;;chrX:82763292..82763317,+!p1@POU3F4!1.55!34.30!POU3F4;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.54!34.05!POU3F3;;chr21:34442439..34442455,+!p1@OLIG1!1.53!32.52!OLIG1;;chr13:72441315..72441454,-!p1@DACH1!1.52!63.52!DACH1;;chr1:151032922..151032951,+!p2@MLLT11!1.51!51.84!MLLT11;;chr1:50889103..50889145,-!p1@DMRTA2!1.49!30.24!DMRTA2;;chr16:51185318..51185348,-!p2@SALL1!1.48!28.97!SALL1;;chr2:63277978..63277995,+!p2@OTX1!1.47!28.46!OTX1;;chr13:100634031..100634045,+!p1@ZIC2!1.46!27.95!ZIC2;;chr18:53068911..53068935,-!p4@TCF4!1.45!30.75!TCF4;;chr21:34398234..34398250,+!p1@OLIG2!1.43!25.92!OLIG2;;chr1:214161272..214161322,+!p1@PROX1!1.41!34.56!PROX1;;chr10:119302232..119302265,+!p1@EMX2!1.41!24.90!EMX2;;chr12:106976837..106976850,+!p5@RFX4!1.41!24.65!RFX4;;chr3:147127177..147127194,+!p2@ZIC1!1.41!24.65!ZIC1;;chr7:14028488..14028516,-!p2@ETV1!1.39!25.66!ETV1;;chr7:96654133..96654150,-!p1@DLX5!1.39!23.63!DLX5;;chr1:2461692..2461710,-!p1@HES5!1.38!22.87!HES5;;chr7:42276787..42276815,-!p1@GLI3!1.35!55.65!GLI3;;chr19:13134772..13134822,+!p2@NFIX!1.33!29.47!NFIX;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.33!20.58!PEG3;;chr1:2985760..2985774,+!p1@PRDM16!1.33!20.58!PRDM16;;chr9:126774091..126774098,+!p4@LHX2!1.33!20.58!LHX2;;chr12:24102576..24102623,-!p2@SOX5!1.33!20.33!SOX5;;chr11:31832862..31832884,-!p2@PAX6!1.32!19.82!PAX6;;chr13:72441074..72441172,-!p2@DACH1!1.32!19.82!DACH1;;chr15:42749722..42749739,-!p2@ZFP106!1.31!34.81!ZFP106;;chr15:80696703..80696754,+!p1@ARNT2!1.31!25.66!ARNT2;;chr13:100623375..100623425,-!p1@ZIC5!1.31!19.31!ZIC5;;chr7:14029283..14029311,-!p1@ETV1!1.29!96.30!ETV1;;chr2:172949484..172949522,+!p1@DLX1!1.29!18.55!DLX1;;chr12:103352277..103352324,+!p2@ASCL1!1.29!18.29!ASCL1;;chr9:14314131..14314147,-!p2@NFIB!1.28!98.08!NFIB;;chr11:31832610..31832639,-!p5@PAX6!1.28!18.04!PAX6;;chr14:29237009..29237049,+!p4@FOXG1!1.28!18.04!FOXG1;;chr12:106976678..106976708,+!p2@RFX4!1.27!17.53!RFX4;;chr6:99282592..99282616,+!p3@POU3F2!1.27!17.53!POU3F2;;chr8:60031682..60031710,-!p2@TOX!1.25!26.93!TOX;;chr21:34442540..34442560,+!p2@OLIG1!1.24!16.26!OLIG1;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.24!16.26!POU3F3;;chr2:172967621..172967637,-!p1@DLX2!1.23!42.43!DLX2;;chr4:57522598..57522664,-!p3@HOPX!1.23!16.01!HOPX;;chr18:42260920..42260951,+!p4@SETBP1!1.22!15.75!SETBP1;;chr7:20826504..20826526,-!p1@SP8!1.21!15.25!SP8;;chr10:119303078..119303169,+!p2@EMX2!1.21!15.25!EMX2;;chr7:14026022..14026044,-!p7@ETV1!1.20!14.74!ETV1;;chr7:14029312..14029325,-!p4@ETV1!1.19!18.04!ETV1;;chr1:23696448..23696453,-!p5@ZNF436!1.18!17.28!ZNF436;;chr9:77112244..77112262,+!p1@RORB!1.18!15.75!RORB;;chr10:31610110..31610159,+!p2@ZEB1!1.18!14.23!ZEB1;;chr11:31832807..31832823,-!p4@PAX6!1.18!14.23!PAX6;;chr11:31839488..31839515,-!p3@PAX6!1.18!14.23!PAX6;;chr2:5832508..5832524,+!p1@SOX11!1.18!13.98!SOX11;;chr16:1031762..1031781,+!p1@SOX8!1.18!13.98!SOX8;;chr14:73360799..73360817,-!p1@DPF3!1.17!47.77!DPF3;;chr8:80679993..80680011,-!p1@HEY1!1.17!19.82!HEY1;;chr18:42260840..42260860,+!p2@SETBP1!1.17!13.72!SETBP1;;chr1:61548374..61548415,+!p4@NFIA!1.14!23.88!NFIA;;chr15:57511589..57511608,+!p4@TCF12!1.14!12.96!TCF12;;chr20:55204351..55204377,+!p1@TFAP2C!1.13!15.75!TFAP2C;;chr6:126070769..126070801,+!p1@HEY2!1.13!14.48!HEY2;;chr1:151032860..151032918,+!p1@MLLT11!1.12!143.31!MLLT11;;chr14:21994337..21994442,-!p1@SALL2!1.11!33.29!SALL2;;chr8:60031934..60031986,-!p6@TOX!1.09!11.43!TOX;;chr5:88081308..88081333,-!p8@MEF2C!1.09!11.18!MEF2C;;chr6:99282570..99282591,+!p4@POU3F2!1.09!11.18!POU3F2;;chr4:57547870..57547873,-!p11@HOPX!1.09!11.18!HOPX;;chr8:60031619..60031676,-!p1@TOX!1.08!23.88!TOX;;chrX:84498989..84499003,+!p1@ZNF711!1.08!15.25!ZNF711;;chr3:185826855..185826911,-!p1@ETV5!1.07!295.51!ETV5;;chr3:147111231..147111281,+!p3@ZIC1!1.07!10.67!ZIC1;;chr4:57522513..57522548,-!p4@HOPX!1.07!10.67!HOPX;;chr13:95364761..95364780,-!p2@SOX21!1.07!10.67!SOX21;;chr11:31832687..31832704,-!p6@PAX6!1.06!10.42!PAX6;;chr13:112721457..112721482,+!p1@SOX1!1.06!10.42!SOX1;;chr7:14026063..14026091,-!p10@ETV1!1.06!10.42!ETV1;;chr1:167298300..167298319,+!p2@POU2F1!1.05!10.16!POU2F1;;chr10:31608127..31608156,+!p1@ZEB1!1.04!184.22!ZEB1;;chr1:61330997..61331017,+!p17@NFIA!1.04!9.91!NFIA;;chr10:119302645..119302712,+!p3@EMX2!1.03!9.66!EMX2;;chr17:47892398..47892407,+!p2@KAT7!1.03!9.66!KAT7;;chr7:28725740..28725778,+!p1@CREB5!1.02!85.63!CREB5;;chr7:42192043..42192057,-!p10@GLI3!1.02!9.40!GLI3;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!1.02!9.40!POU3F3;;chr2:105470714..105470723,+!p@chr2:105470714..105470723,+!1.02!9.40!POU3F3;;chr8:77593474..77593612,+!p1@ZFHX4!1.01!39.89!ZFHX4;;chr2:172950227..172950249,+!p2@DLX1!1.01!9.15!DLX1;;chr3:21792682..21792720,-!p1@ZNF385D!1.01!9.15!ZNF385D;;chr4:57547820..57547829,-!p8@HOPX!1.01!9.15!HOPX;;chr14:33403648..33403710,+!p3@NPAS3!1.01!9.15!NPAS3;;chr11:31832581..31832601,-!p7@PAX6!1.00!8.89!PAX6;;chr6:99282475..99282501,+!p1@POU3F2!1.00!8.89!POU3F2;;chr19:19976683..19976709,+!p1@ZNF253!0.99!39.38!ZNF253;;chrX:84499081..84499115,+!p2@ZNF711!0.99!13.21!ZNF711;;chr18:22932080..22932170,-!p1@ZNF521!0.98!37.35!ZNF521;;chr16:51185149..51185160,-!p5@SALL1!0.98!8.64!SALL1;;chr1:42384486..42384501,-!p6@HIVEP3!0.98!8.64!HIVEP3;;chr11:16627528..16627550,-!p7@SOX6!0.98!8.64!SOX6;;chr11:16627614..16627651,-!p4@SOX6!0.98!8.64!SOX6;;chr14:29236510..29236521,+!p9@FOXG1!0.98!8.64!FOXG1;;chr18:56531584..56531646,+!p4@ZNF532!0.97!11.18!ZNF532;;chr14:29236460..29236467,+!p12@FOXG1!0.97!8.39!FOXG1;;chr7:14025816..14025842,-!p9@ETV1!0.97!8.39!ETV1;;chr15:37392724..37392757,-!p1@MEIS2!0.96!38.11!MEIS2;;chr17:41623692..41623715,-!p1@ETV4!0.96!35.83!ETV4;;chr6:99283040..99283063,+!p5@POU3F2!0.96!8.13!POU3F2;;chrX:136648279..136648295,+!p1@ZIC3!0.96!8.13!ZIC3;;chr1:151032957..151032968,+!p7@MLLT11!0.96!8.13!MLLT11;;chr12:24103844..24103880,-!p3@SOX5!0.96!8.13!SOX5;;chr18:56532100..56532130,+!p1@ZNF532!0.95!14.74!ZNF532;;chr12:125003087..125003141,-!p4@NCOR2!0.95!10.16!NCOR2;;chrX:136648643..136648711,+!p2@ZIC3!0.95!7.88!ZIC3;;chr7:14025855..14025890,-!p6@ETV1!0.95!7.88!ETV1;;chr2:5832493..5832507,+!p2@SOX11!0.95!7.88!SOX11;;chr19:22034809..22034878,-!p2@ZNF43!0.94!28.20!ZNF43;;chr6:91006518..91006570,-!p1@BACH2!0.94!18.29!BACH2;;chr12:24715376..24715432,-!p1@SOX5!0.94!9.91!SOX5;;chr13:100634004..100634025,+!p2@ZIC2!0.94!7.62!ZIC2;;chr13:28366616..28366622,+!p1@GSX1!0.94!7.62!GSX1;;chr9:14313893..14313908,-!p7@NFIB!0.93!10.93!NFIB;;chr1:164528687..164528711,+!p6@PBX1!0.93!8.89!PBX1;;chr1:23857325..23857416,-!p2@E2F2!0.92!8.64!E2F2;;chr4:57522166..57522260,-!p2@HOPX!0.92!8.39!HOPX;;chr3:114173720..114173794,-!p6@ZBTB20!0.92!7.37!ZBTB20;;chr20:55205825..55205847,+!p2@TFAP2C!0.92!7.37!TFAP2C;;chrX:139587228..139587234,-!p1@SOX3!0.92!7.37!SOX3;;chr9:14314106..14314119,-!p5@NFIB!0.91!13.21!NFIB;;chr3:114173654..114173696,-!p12@ZBTB20!0.91!7.11!ZBTB20;;chr4:57547773..57547780,-!p12@HOPX!0.91!7.11!HOPX;;chr19:58545454..58545498,+!p1@ZSCAN1!0.91!7.11!ZSCAN1;;chr7:42276822..42276895,-!p2@GLI3!0.90!21.60!GLI3;;chr1:61547894..61547968,+!p2@NFIA!0.90!21.09!NFIA;;chr2:25475120..25475176,-!p2@DNMT3A!0.90!9.40!DNMT3A;;chr6:99282438..99282457,+!p2@POU3F2!0.90!6.86!POU3F2;;chr10:119302268..119302282,+!p4@EMX2!0.90!6.86!EMX2;;chr19:57352109..57352153,-!p2@ZIM2!0.90!6.86!ZIM2;;chr19:23299851..23299880,+!p2@ZNF730!0.90!6.86!ZNF730;;chr14:21994449..21994524,-!p2@SALL2!0.89!20.84!SALL2;;chr12:26277817..26277863,-!p2@BHLHE41!0.89!9.40!BHLHE41;;chr19:23433144..23433204,-!p1@ZNF724P!0.88!30.75!ZNF724P;;chr19:38720294..38720348,-!p1@DPF1!0.88!8.39!DPF1;;chrX:82763265..82763283,+!p2@POU3F4!0.88!6.61!POU3F4;;chr14:33403860..33403874,+!p5@NPAS3!0.88!6.61!NPAS3;;chr6:21593973..21593988,+!p1@SOX4!0.87!244.95!SOX4;;chr14:33403930..33403943,+!p7@NPAS3!0.87!6.35!NPAS3;;chr1:40105299..40105326,-!p1@HEYL!0.87!6.35!HEYL;;chr3:181429641..181429650,+!p3@SOX2!0.87!6.35!SOX2;;chr9:14308004..14308041,-!p14@NFIB!0.87!6.35!NFIB;;chr1:59249732..59249749,-!p2@JUN!0.86!80.80!JUN;;chr11:16629261..16629284,-!p1@SOX6!0.85!6.10!SOX6;;chr22:38380543..38380569,-!p1@SOX10!0.85!6.10!SOX10;;chr18:22932004..22932021,-!p2@ZNF521!0.85!6.10!ZNF521;;chr19:13135582..13135600,+!p3@NFIX!0.85!6.10!NFIX;;chr5:88178983..88179012,-!p1@MEF2C!0.84!49.04!MEF2C;;chr5:124082279..124082319,-!p3@ZNF6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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000047;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002319;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016
|ffid_belonging_in_development=CL:0000133,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor1.CNhs11063.11275-116H6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor1.CNhs11063.11275-116H6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor1.CNhs11063.11275-116H6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor1.CNhs11063.11275-116H6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor1.CNhs11063.11275-116H6.hg38.nobarcode.ctss.bed.gz
|id=FF:11275-116H6
|id=FF:11275-116H6
|is_a=EFO:0002091;;FF:0000002;;FF:0000120;;FF:0000210
|is_a=EFO:0002091;;FF:0000120
|is_obsolete=
|library_id=CNhs11063
|library_id_phase_based=2:CNhs11063
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11275
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11275
|name=Neural stem cells, donor1
|name=Neural stem cells, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 63:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11063,LSID723,release008,COMPLETED
|profile_hcage=CNhs11063,LSID723,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10011,,,
|profile_srnaseq=SRhi10011,,,
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|rna_box=116
|rna_box=116
|rna_catalog_number=custom
|rna_catalog_number=custom
Line 56: Line 80:
|rna_tube_id=116H6
|rna_tube_id=116H6
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10011.ATGTCA
|sample_age=embryo 19week
|sample_age=embryo 19week
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 77: Line 103:
|sample_tissue=brain
|sample_tissue=brain
|top_motifs=SOX2:3.66571068404;NKX2-3_NKX2-5:3.06998979594;NANOG:2.67442529317;TFDP1:2.66160994633;OCT4_SOX2{dimer}:2.5288807038;LHX3,4:2.34653633445;NKX6-1,2:2.28296011166;MZF1:2.24368282868;SOX17:2.24020477599;MYFfamily:2.18492828658;GFI1:2.10544568573;MTE{core}:2.07802644338;PRRX1,2:2.06240658081;LEF1_TCF7_TCF7L1,2:2.03262860607;PAX8:1.90199128316;ZFP161:1.87774852365;T:1.84457358013;PAX5:1.84256204199;NHLH1,2:1.77394501268;VSX1,2:1.74165419776;RFX1:1.64355882103;CUX2:1.61999395149;NKX2-1,4:1.55226481809;POU5F1:1.52207068311;SOX{8,9,10}:1.52040326273;CDC5L:1.51963622213;STAT1,3:1.49064680128;EGR1..3:1.49031477055;PBX1:1.48880767643;SPZ1:1.47596954456;HAND1,2:1.46736973839;JUN:1.45425027313;RBPJ:1.4380684454;MED-1{core}:1.40906202081;MAZ:1.37963549353;GTF2I:1.37515471727;ZBTB6:1.37107187296;HIC1:1.36313709014;DBP:1.25173552455;PATZ1:1.23256007412;RREB1:1.23111706531;ZNF384:1.22506616406;GFI1B:1.19238564044;PRDM1:1.14396851406;TFAP2B:1.07976259378;GATA4:1.03834633443;SMAD1..7,9:0.990353214642;YY1:0.980321496325;PAX6:0.954895863967;POU6F1:0.944222639324;ZIC1..3:0.938188572876;E2F1..5:0.91229803543;RFX2..5_RFXANK_RFXAP:0.902432382313;KLF4:0.868445279304;ALX1:0.858657307908;EBF1:0.855673812723;FOXM1:0.842289230801;HOX{A4,D4}:0.841955497138;ADNP_IRX_SIX_ZHX:0.831718449874;BPTF:0.827491938592;NR3C1:0.814260096623;CRX:0.809907143819;REST:0.747433042348;TEF:0.733564926133;TFCP2:0.730458195681;NRF1:0.726694999856;PAX4:0.706251462673;IKZF1:0.706126740658;GZF1:0.682098766163;POU3F1..4:0.674676432659;EP300:0.659275919839;NFY{A,B,C}:0.641686734317;BREu{core}:0.640294721517;TGIF1:0.633906955218;NR1H4:0.6087269291;GCM1,2:0.599021649965;ONECUT1,2:0.598049416929;ATF2:0.594157444974;TLX1..3_NFIC{dimer}:0.589350138458;GTF2A1,2:0.56341042693;ZNF423:0.540680181666;ZNF143:0.530442017305;PAX3,7:0.478760645533;SOX5:0.470545764804;AHR_ARNT_ARNT2:0.449627698945;HSF1,2:0.396843249671;HOXA9_MEIS1:0.365894123105;FOXN1:0.354958500822;PDX1:0.347800021818;MYB:0.325921275858;NKX3-2:0.31729778833;NFE2L2:0.272889640994;NANOG{mouse}:0.2649477524;FOXP3:0.249936483282;MYBL2:0.24895704448;NFE2L1:0.247338088974;RORA:0.226625246002;TLX2:0.2060302155;NFIX:0.204309702074;LMO2:0.194843075866;ELK1,4_GABP{A,B1}:0.159938840216;HBP1_HMGB_SSRP1_UBTF:0.159384259375;PAX1,9:0.155435503713;TOPORS:0.150915480208;TFAP2{A,C}:0.127209912958;MYOD1:0.110378439685;XCPE1{core}:0.0917630659743;MTF1:0.0904777741077;HOX{A5,B5}:0.0854784352603;FOXD3:0.0707577473396;CREB1:0.0471387061914;MAFB:0.0390303412758;UFEwm:0.0350813924913;TBX4,5:0.0234712643571;TP53:0.00912241888313;STAT2,4,6:-0.00316673163496;HMX1:-0.011172793339;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0155517814305;NFIL3:-0.029875556221;AR:-0.0382916734939;IKZF2:-0.0857231259124;SREBF1,2:-0.101354934669;HNF1A:-0.137868134751;EVI1:-0.143300506321;NFE2:-0.181759839464;CDX1,2,4:-0.184758063211;NKX2-2,8:-0.207806708228;FOS_FOS{B,L1}_JUN{B,D}:-0.210079107298;FOXP1:-0.232279353263;ATF4:-0.240610933129;NFATC1..3:-0.257157136154;POU2F1..3:-0.257369193117;POU1F1:-0.268634060533;HNF4A_NR2F1,2:-0.273371507219;BACH2:-0.281453520452;TFAP4:-0.283548371357;DMAP1_NCOR{1,2}_SMARC:-0.292984437662;TBP:-0.336339288394;FOSL2:-0.349901021927;MEF2{A,B,C,D}:-0.386618180139;ESRRA:-0.38852551413;FOXQ1:-0.403247892137;TEAD1:-0.411404935231;ALX4:-0.417726943936;SP1:-0.427207120165;SPIB:-0.43953207009;ELF1,2,4:-0.468434254084;RUNX1..3:-0.47038574292;FOX{D1,D2}:-0.472916699432;ZNF238:-0.491663703526;ATF5_CREB3:-0.498768177291;IRF1,2:-0.510454341688;NR6A1:-0.515846969975;EN1,2:-0.524596726848;NFKB1_REL_RELA:-0.532424942942;GATA6:-0.554952566018;SPI1:-0.577826168395;HMGA1,2:-0.633077815962;ZBTB16:-0.710983857583;PAX2:-0.727747218252;ZNF148:-0.730165173554;SRF:-0.74154253112;IRF7:-0.752256449074;HLF:-0.758169881122;FOX{I1,J2}:-0.768036545455;CEBPA,B_DDIT3:-0.783532575951;bHLH_family:-0.784305022602;FOXA2:-0.784802744445;FOXL1:-0.792346314898;FOX{F1,F2,J1}:-0.807061965593;XBP1:-0.810753091667;ARID5B:-0.827319956722;RXR{A,B,G}:-0.829928387452;ETS1,2:-0.850521484484;HOX{A6,A7,B6,B7}:-0.861966281158;STAT5{A,B}:-0.869034761405;ESR1:-0.885844234579;PPARG:-0.895476849047;SNAI1..3:-0.921858764496;FOXO1,3,4:-1.04365693081;NR5A1,2:-1.07623794714;PITX1..3:-1.09029374828;TAL1_TCF{3,4,12}:-1.10421781094;ATF6:-1.10430672238;ZEB1:-1.11227739523;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.15236042588;HES1:-1.25225562973;RXRA_VDR{dimer}:-1.27833387475;AIRE:-1.47819833318;GLI1..3:-1.61155061464;HIF1A:-1.72972142455;NKX3-1:-1.86838138186
|top_motifs=SOX2:3.66571068404;NKX2-3_NKX2-5:3.06998979594;NANOG:2.67442529317;TFDP1:2.66160994633;OCT4_SOX2{dimer}:2.5288807038;LHX3,4:2.34653633445;NKX6-1,2:2.28296011166;MZF1:2.24368282868;SOX17:2.24020477599;MYFfamily:2.18492828658;GFI1:2.10544568573;MTE{core}:2.07802644338;PRRX1,2:2.06240658081;LEF1_TCF7_TCF7L1,2:2.03262860607;PAX8:1.90199128316;ZFP161:1.87774852365;T:1.84457358013;PAX5:1.84256204199;NHLH1,2:1.77394501268;VSX1,2:1.74165419776;RFX1:1.64355882103;CUX2:1.61999395149;NKX2-1,4:1.55226481809;POU5F1:1.52207068311;SOX{8,9,10}:1.52040326273;CDC5L:1.51963622213;STAT1,3:1.49064680128;EGR1..3:1.49031477055;PBX1:1.48880767643;SPZ1:1.47596954456;HAND1,2:1.46736973839;JUN:1.45425027313;RBPJ:1.4380684454;MED-1{core}:1.40906202081;MAZ:1.37963549353;GTF2I:1.37515471727;ZBTB6:1.37107187296;HIC1:1.36313709014;DBP:1.25173552455;PATZ1:1.23256007412;RREB1:1.23111706531;ZNF384:1.22506616406;GFI1B:1.19238564044;PRDM1:1.14396851406;TFAP2B:1.07976259378;GATA4:1.03834633443;SMAD1..7,9:0.990353214642;YY1:0.980321496325;PAX6:0.954895863967;POU6F1:0.944222639324;ZIC1..3:0.938188572876;E2F1..5:0.91229803543;RFX2..5_RFXANK_RFXAP:0.902432382313;KLF4:0.868445279304;ALX1:0.858657307908;EBF1:0.855673812723;FOXM1:0.842289230801;HOX{A4,D4}:0.841955497138;ADNP_IRX_SIX_ZHX:0.831718449874;BPTF:0.827491938592;NR3C1:0.814260096623;CRX:0.809907143819;REST:0.747433042348;TEF:0.733564926133;TFCP2:0.730458195681;NRF1:0.726694999856;PAX4:0.706251462673;IKZF1:0.706126740658;GZF1:0.682098766163;POU3F1..4:0.674676432659;EP300:0.659275919839;NFY{A,B,C}:0.641686734317;BREu{core}:0.640294721517;TGIF1:0.633906955218;NR1H4:0.6087269291;GCM1,2:0.599021649965;ONECUT1,2:0.598049416929;ATF2:0.594157444974;TLX1..3_NFIC{dimer}:0.589350138458;GTF2A1,2:0.56341042693;ZNF423:0.540680181666;ZNF143:0.530442017305;PAX3,7:0.478760645533;SOX5:0.470545764804;AHR_ARNT_ARNT2:0.449627698945;HSF1,2:0.396843249671;HOXA9_MEIS1:0.365894123105;FOXN1:0.354958500822;PDX1:0.347800021818;MYB:0.325921275858;NKX3-2:0.31729778833;NFE2L2:0.272889640994;NANOG{mouse}:0.2649477524;FOXP3:0.249936483282;MYBL2:0.24895704448;NFE2L1:0.247338088974;RORA:0.226625246002;TLX2:0.2060302155;NFIX:0.204309702074;LMO2:0.194843075866;ELK1,4_GABP{A,B1}:0.159938840216;HBP1_HMGB_SSRP1_UBTF:0.159384259375;PAX1,9:0.155435503713;TOPORS:0.150915480208;TFAP2{A,C}:0.127209912958;MYOD1:0.110378439685;XCPE1{core}:0.0917630659743;MTF1:0.0904777741077;HOX{A5,B5}:0.0854784352603;FOXD3:0.0707577473396;CREB1:0.0471387061914;MAFB:0.0390303412758;UFEwm:0.0350813924913;TBX4,5:0.0234712643571;TP53:0.00912241888313;STAT2,4,6:-0.00316673163496;HMX1:-0.011172793339;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0155517814305;NFIL3:-0.029875556221;AR:-0.0382916734939;IKZF2:-0.0857231259124;SREBF1,2:-0.101354934669;HNF1A:-0.137868134751;EVI1:-0.143300506321;NFE2:-0.181759839464;CDX1,2,4:-0.184758063211;NKX2-2,8:-0.207806708228;FOS_FOS{B,L1}_JUN{B,D}:-0.210079107298;FOXP1:-0.232279353263;ATF4:-0.240610933129;NFATC1..3:-0.257157136154;POU2F1..3:-0.257369193117;POU1F1:-0.268634060533;HNF4A_NR2F1,2:-0.273371507219;BACH2:-0.281453520452;TFAP4:-0.283548371357;DMAP1_NCOR{1,2}_SMARC:-0.292984437662;TBP:-0.336339288394;FOSL2:-0.349901021927;MEF2{A,B,C,D}:-0.386618180139;ESRRA:-0.38852551413;FOXQ1:-0.403247892137;TEAD1:-0.411404935231;ALX4:-0.417726943936;SP1:-0.427207120165;SPIB:-0.43953207009;ELF1,2,4:-0.468434254084;RUNX1..3:-0.47038574292;FOX{D1,D2}:-0.472916699432;ZNF238:-0.491663703526;ATF5_CREB3:-0.498768177291;IRF1,2:-0.510454341688;NR6A1:-0.515846969975;EN1,2:-0.524596726848;NFKB1_REL_RELA:-0.532424942942;GATA6:-0.554952566018;SPI1:-0.577826168395;HMGA1,2:-0.633077815962;ZBTB16:-0.710983857583;PAX2:-0.727747218252;ZNF148:-0.730165173554;SRF:-0.74154253112;IRF7:-0.752256449074;HLF:-0.758169881122;FOX{I1,J2}:-0.768036545455;CEBPA,B_DDIT3:-0.783532575951;bHLH_family:-0.784305022602;FOXA2:-0.784802744445;FOXL1:-0.792346314898;FOX{F1,F2,J1}:-0.807061965593;XBP1:-0.810753091667;ARID5B:-0.827319956722;RXR{A,B,G}:-0.829928387452;ETS1,2:-0.850521484484;HOX{A6,A7,B6,B7}:-0.861966281158;STAT5{A,B}:-0.869034761405;ESR1:-0.885844234579;PPARG:-0.895476849047;SNAI1..3:-0.921858764496;FOXO1,3,4:-1.04365693081;NR5A1,2:-1.07623794714;PITX1..3:-1.09029374828;TAL1_TCF{3,4,12}:-1.10421781094;ATF6:-1.10430672238;ZEB1:-1.11227739523;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.15236042588;HES1:-1.25225562973;RXRA_VDR{dimer}:-1.27833387475;AIRE:-1.47819833318;GLI1..3:-1.61155061464;HIF1A:-1.72972142455;NKX3-1:-1.86838138186
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11275-116H6;search_select_hide=table117:FF:11275-116H6
}}
}}

Latest revision as of 16:30, 3 June 2020

Name:Neural stem cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11063
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebrain
dev stage19 weeks old fetus
sexunknown
ageembryo 19week
cell typeneural stem cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2457
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005090
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11063 CAGE DRX008373 DRR009245
Accession ID Hg19

Library idBAMCTSS
CNhs11063 DRZ000670 DRZ002055
Accession ID Hg38

Library idBAMCTSS
CNhs11063 DRZ012020 DRZ013405
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005090
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10011.ATGTCA sRNA-Seq DRX037175 DRR041541
Accession ID Hg19

Library idBAMCTSS
SRhi10011.ATGTCA DRZ007183


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.0983
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0815
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.364
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0968
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.293
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.214
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.305
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.288
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.146
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.0983
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.0983
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.23
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.246
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0983
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11063

Jaspar motifP-value
MA0002.28.49285e-4
MA0003.10.162
MA0004.10.21
MA0006.10.918
MA0007.10.171
MA0009.10.0487
MA0014.10.309
MA0017.10.00418
MA0018.20.724
MA0019.10.65
MA0024.10.00234
MA0025.10.764
MA0027.10.432
MA0028.10.68
MA0029.10.0641
MA0030.10.615
MA0031.10.0913
MA0035.20.0218
MA0038.13.63756e-4
MA0039.20.0349
MA0040.10.554
MA0041.10.352
MA0042.10.646
MA0043.10.561
MA0046.10.427
MA0047.20.00467
MA0048.10.457
MA0050.11.02795e-4
MA0051.10.051
MA0052.10.523
MA0055.10.00265
MA0057.10.407
MA0058.10.143
MA0059.10.0435
MA0060.17.23315e-4
MA0061.10.0184
MA0062.20.0985
MA0065.20.00159
MA0066.10.0925
MA0067.10.57
MA0068.10.0155
MA0069.10.893
MA0070.10.122
MA0071.10.035
MA0072.10.411
MA0073.10.741
MA0074.10.297
MA0076.10.997
MA0077.10.24
MA0078.10.39
MA0079.20.996
MA0080.24.36396e-10
MA0081.10.124
MA0083.10.224
MA0084.10.876
MA0087.10.596
MA0088.10.129
MA0090.10.133
MA0091.10.178
MA0092.10.631
MA0093.10.254
MA0099.23.97624e-5
MA0100.10.382
MA0101.10.0195
MA0102.20.044
MA0103.10.00589
MA0104.20.264
MA0105.10.00481
MA0106.10.234
MA0107.10.0164
MA0108.20.278
MA0111.10.628
MA0112.22.44986e-4
MA0113.10.0634
MA0114.10.02
MA0115.10.673
MA0116.10.00575
MA0117.10.844
MA0119.10.0819
MA0122.10.961
MA0124.10.651
MA0125.10.00303
MA0131.10.833
MA0135.10.0103
MA0136.12.19763e-7
MA0137.20.805
MA0138.20.464
MA0139.10.411
MA0140.10.0066
MA0141.10.00415
MA0142.13.78465e-4
MA0143.10.00352
MA0144.10.247
MA0145.10.397
MA0146.10.0197
MA0147.10.179
MA0148.10.0344
MA0149.10.00601
MA0150.15.45638e-4
MA0152.10.47
MA0153.10.769
MA0154.10.0272
MA0155.10.631
MA0156.19.76896e-5
MA0157.10.0345
MA0159.10.00848
MA0160.10.0126
MA0162.10.144
MA0163.13.72898e-4
MA0164.10.631
MA0258.10.0101
MA0259.10.525



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11063

Novel motifP-value
10.0429
100.0934
1000.36
1010.734
1020.73
1030.227
1040.133
1050.565
1060.129
1070.693
1080.591
1090.00328
110.0151
1100.0823
1110.0477
1120.0984
1130.82
1140.00799
1150.749
1160.356
1170.0185
1180.0934
1190.0875
120.892
1200.961
1210.557
1220.653
1230.247
1240.196
1250.895
1260.113
1270.068
1280.708
1290.417
130.0182
1300.467
1310.727
1320.742
1330.251
1340.693
1350.791
1360.106
1370.535
1380.396
1390.0176
140.794
1400.143
1410.661
1420.501
1430.0266
1440.777
1450.865
1460.665
1470.865
1480.269
1490.309
150.063
1500.321
1510.503
1520.075
1530.951
1540.64
1550.0918
1560.159
1570.706
1580.639
1590.326
160.0786
1600.086
1610.0764
1620.709
1630.88
1640.00592
1650.615
1660.922
1670.397
1680.599
1690.0133
170.073
180.36
190.29
20.812
200.264
210.125
220.245
230.298
240.611
250.539
260.018
270.64
280.878
290.0367
30.04
300.813
310.935
320.0237
330.286
340.693
350.764
360.0843
370.0342
380.117
390.549
40.968
400.0282
410.601
420.181
430.162
440.0819
450.867
460.102
470.042
480.067
490.122
50.257
500.581
510.497
520.732
530.721
540.379
550.409
560.411
570.289
580.148
590.111
60.558
600.135
610.0339
620.11
630.166
640.185
650.0949
660.972
670.561
680.5
690.554
70.27
700.0204
710.0358
720.494
730.0223
740.231
750.0235
760.236
770.064
780.0449
790.347
80.102
800.915
810.479
820.263
830.743
840.642
850.0926
860.402
870.0644
880.933
890.562
90.568
900.599
910.978
920.139
930.299
940.0825
950.0115
960.922
970.801
980.0948
990.911



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11063


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000047 (neuronal stem cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000120 (human neural stem cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

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