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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005906
|DRA_sample_Accession=CAGE@SAMD00005906
|accession_numbers=CAGE;DRX008395;DRR009267;DRZ000692;DRZ002077
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005906
|HumanCAGEScanFiles=NCig10046;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Pancreatic%2520stromal%2520cells%252c%2520donor1.NCig10046.11249-116E7.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Pancreatic%2520stromal%2520cells%252c%2520donor1.NCig10046.11249-116E7.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Pancreatic%2520stromal%2520cells%252c%2520donor1.NCig10046.11249-116E7.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Pancreatic%2520stromal%2520cells%252c%2520donor1.NCig10046.11249-116E7.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008395;DRR009267;DRZ000692;DRZ002077;DRZ012042;DRZ013427
|accession_numbers_RNASeq=sRNA-Seq;DRX037017;DRR041383;DRZ007025
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001264,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001264,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000255,CL:0002574
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000255,CL:0002574
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|def=
|def=
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.82!73.59!PRRX1;;chr4:81118647..81118666,+!p1@PRDM8!1.80!80.19!PRDM8;;chr2:239756671..239756732,+!p1@TWIST2!1.79!186.02!TWIST2;;chr10:28034739..28034756,-!p1@MKX!1.74!53.87!MKX;;chr7:19157248..19157268,-!p1@TWIST1!1.69!127.81!TWIST1;;chr15:57511609..57511651,+!p2@TCF12!1.62!67.86!TCF12;;chr3:141121847..141121868,+!p5@ZBTB38!1.58!55.26!ZBTB38;;chr1:170633348..170633399,+!p2@PRRX1!1.50!41.10!PRRX1;;chr7:27224842..27224872,-!p1@HOXA11!1.49!29.89!HOXA11;;chr2:239756739..239756755,+!p2@TWIST2!1.45!45.87!TWIST2;;chr6:1389789..1389821,+!p1@FOXF2!1.43!35.71!FOXF2;;chr7:27224795..27224840,-!p2@HOXA11!1.41!24.50!HOXA11;;chr12:66218255..66218304,+!p3@HMGA2!1.36!57.69!HMGA2;;chr15:42749722..42749739,-!p2@ZFP106!1.36!38.49!ZFP106;;chr17:59529743..59529798,+!p1@TBX4!1.35!21.37!TBX4;;chr9:132427883..132427951,+!p2@PRRX2!1.33!20.59!PRRX2;;chr12:66218598..66218645,+!p2@HMGA2!1.30!85.49!HMGA2;;chr5:134369905..134369972,-!p1@PITX1!1.30!29.19!PITX1;;chr9:132427972..132428056,+!p1@PRRX2!1.30!24.41!PRRX2;;chr17:59477233..59477263,+!p1@TBX2!1.27!54.30!TBX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.25!85.49!CREB3L1;;chr6:10415276..10415341,-!p2@TFAP2A!1.24!19.98!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.23!26.59!TFAP2A;;chr6:100912752..100912778,-!p2@SIM1!1.21!15.12!SIM1;;chr8:99956662..99956684,+!p1@OSR2!1.18!21.72!OSR2;;chr1:170633262..170633285,+!p3@PRRX1!1.17!15.64!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!1.16!124.76!HMGA2;;chr12:114845810..114845824,-!p1@TBX5!1.16!13.38!TBX5;;chr1:170632250..170632277,+!p7@PRRX1!1.15!13.03!PRRX1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.14!12.86!RUNX1T1;;chr18:52969844..52969895,-!p27@TCF4!1.13!12.42!TCF4;;chr5:134369879..134369898,-!p2@PITX1!1.11!11.90!PITX1;;chr6:1312325..1312340,+!p1@FOXQ1!1.08!18.16!FOXQ1;;chr3:157823517..157823562,-!p1@SHOX2!1.07!11.64!SHOX2;;chr14:61116183..61116208,-!p1@SIX1!1.06!40.14!SIX1;;chr11:65686802..65686818,+!p6@DRAP1!1.06!18.42!DRAP1;;chr17:59477275..59477286,+!p3@TBX2!1.06!14.16!TBX2;;chr6:100912785..100912822,-!p1@SIM1!1.05!10.34!SIM1;;chr3:141121871..141121885,+!p13@ZBTB38!1.05!10.17!ZBTB38;;chr19:13134772..13134822,+!p2@NFIX!1.04!14.94!NFIX;;chr3:141121820..141121838,+!p9@ZBTB38!1.04!9.90!ZBTB38;;chr7:44143925..44143970,+!p1@AEBP1!1.01!207.65!AEBP1;;chr11:65667884..65667895,-!p2@FOSL1!1.01!36.14!FOSL1;;chr6:34204921..34204939,+!p3@HMGA1!1.00!275.94!HMGA1;;chr12:115122318..115122331,-!p2@TBX3!1.00!9.04!TBX3;;chrY:21906594..21906622,-!p1@KDM5D!1.00!9.04!KDM5D;;chr11:65687362..65687436,+!p3@DRAP1!0.99!40.92!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!0.99!9.56!PRRX1;;chr5:321810..321877,+!p1@AHRR!0.97!27.37!AHRR;;chr14:24837368..24837401,+!p1@NFATC4!0.97!20.07!NFATC4;;chr12:66218212..66218244,+!p5@HMGA2!0.97!12.34!HMGA2;;chr12:115121802..115121814,-!p5@TBX3!0.95!7.99!TBX3;;chr1:170632723..170632739,+!p8@PRRX1!0.95!7.82!PRRX1;;chr1:170632137..170632172,+!p10@PRRX1!0.93!7.56!PRRX1;;chr7:27213893..27213954,-!p1@HOXA10!0.93!7.56!HOXA10;;chr12:66218183..66218209,+!p4@HMGA2!0.92!14.60!HMGA2;;chr12:115121770..115121781,-!p4@TBX3!0.91!7.12!TBX3;;chr7:14029283..14029311,-!p1@ETV1!0.90!38.66!ETV1;;chr7:14028488..14028516,-!p2@ETV1!0.90!7.65!ETV1;;chrY:2803415..2803468,+!p1@ZFY!0.90!6.86!ZFY;;chr2:102091566..102091581,-!p1@RFX8!0.90!6.86!RFX8;;chr12:115121962..115121987,-!p1@TBX3!0.89!59.86!TBX3;;chr11:46299539..46299620,+!p2@CREB3L1!0.89!11.82!CREB3L1;;chr2:223163706..223163730,-!p1@PAX3!0.89!6.69!PAX3;;chr6:1389824..1389840,+!p3@FOXF2!0.89!6.69!FOXF2;;chr7:44143978..44143989,+!p2@AEBP1!0.88!12.34!AEBP1;;chr15:76629123..76629151,+!p1@ISL2!0.88!7.39!ISL2;;chr12:53614115..53614154,-!p1@RARG!0.87!36.32!RARG;;chr6:85474299..85474324,-!p1@TBX18!0.87!11.99!TBX18;;chr15:96869114..96869160,+!p11@NR2F2!0.86!8.60!NR2F2;;chr11:65687222..65687240,+!p7@DRAP1!0.86!8.25!DRAP1;;chr18:52969674..52969685,-!p24@TCF4!0.86!6.17!TCF4;;chr10:63809106..63809127,+!p1@ARID5B!0.85!88.27!ARID5B;;chr11:65686732..65686756,+!p2@DRAP1!0.85!27.28!DRAP1;;chr15:96869255..96869291,+!p6@NR2F2!0.85!11.47!NR2F2;;chr20:55204351..55204377,+!p1@TFAP2C!0.85!7.82!TFAP2C;;chr1:170632115..170632136,+!p9@PRRX1!0.85!6.08!PRRX1;;chr7:27239740..27239759,-!p2@HOXA13!0.85!6.08!HOXA13;;chr8:93074848..93074871,-!p3@RUNX1T1!0.84!5.99!RUNX1T1;;chr12:66357214..66357233,+!p13@HMGA2!0.84!5.91!HMGA2;;chr2:66662281..66662308,+!p1@MEIS1!0.83!20.94!MEIS1;;chr2:19558373..19558392,-!p1@OSR1!0.83!16.77!OSR1;;chr7:113726357..113726443,+!p1@FOXP2!0.83!10.34!FOXP2;;chr11:65687243..65687276,+!p8@DRAP1!0.83!7.99!DRAP1;;chr12:66218904..66218913,+!p11@HMGA2!0.83!5.82!HMGA2;;chr1:170632477..170632506,+!p6@PRRX1!0.83!5.82!PRRX1;;chr12:114843940..114843955,-!p2@TBX5!0.83!5.73!TBX5;;chr16:86544113..86544145,+!p1@FOXF1!0.82!7.12!FOXF1;;chrX:66763856..66763896,+!p1@AR!0.81!8.17!AR;;chr8:25902876..25902936,-!p1@EBF2!0.81!5.39!EBF2;;chr7:19157043..19157088,-!p2@TWIST1!0.80!14.34!TWIST1;;chr7:27239703..27239715,-!p1@HOXA13!0.80!5.30!HOXA13;;chr15:96874012..96874042,+!p2@NR2F2!0.79!50.13!NR2F2;;chr19:46801639..46801699,+!p1@HIF3A!0.79!5.21!HIF3A;;chr1:164528410..164528428,+!p1@PBX1!0.78!40.92!PBX1;;chr2:66662249..66662267,+!p2@MEIS1!0.78!21.03!MEIS1;;chr18:72922743..72922761,+!p3@TSHZ1!0.78!17.72!TSHZ1;;chr15:96874145..96874166,+!p7@NR2F2!0.78!10.17!NR2F2;;chr6:85473156..85473210,-!p2@TBX18!0.78!6.26!TBX18;;chr17:59477197..59477212,+!p2@TBX2!0.77!8.95!TBX2;;chr12:115122005..115122016,-!p3@TBX3!0.77!5.99!TBX3;;chr6:10412392..10412409,-!p4@TFAP2A!0.77!5.65!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!0.77!4.95!IRX2;;chr6:1389989..1390019,+!p2@FOXF2!0.77!4.87!FOXF2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.77!4.87!HOXC5;;chr18:52989031..52989079,-!p2@TCF4!0.76!11.99!TCF4;;chr12:66218573..66218596,+!p7@HMGA2!0.76!7.30!HMGA2;;chr1:158979792..158979814,+!p2@IFI16!0.75!49.35!IFI16;;chr18:22932080..22932170,-!p1@ZNF521!0.75!21.37!ZNF521;;chr1:158969752..158969780,+!p6@IFI16!0.75!8.60!IFI16;;chr15:57511589..57511608,+!p4@TCF12!0.75!4.60!TCF12;;chr10:63809013..63809041,+!p3@ARID5B!0.74!27.80!ARID5B;;chr1:164528445..164528459,+!p2@PBX1!0.74!15.29!PBX1;;chr7:14029312..14029325,-!p4@ETV1!0.74!5.73!ETV1;;chr1:170633058..170633084,+!p5@PRRX1!0.74!4.52!PRRX1;;chr10:63853436..63853442,+!p4@ARID5B!0.73!25.89!ARID5B;;chr16:31076332..31076388,-!p3@ZNF668!0.73!4.34!ZNF668;;chr12:66218378..66218401,+!p6@HMGA2!0.71!6.78!HMGA2;;chr1:170632762..170632786,+!p13@PRRX1!0.71!4.17!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!0.71!4.08!HAND2;;chr3:37217736..37217753,-!p2@LRRFIP2!0.70!18.94!LRRFIP2;;chr7:44143997..44144008,+!p3@AEBP1!0.70!5.30!AEBP1;;chr12:66218420..66218439,+!p12@HMGA2!0.70!4.00!HMGA2;;chr2:102091144..102091183,-!p2@RFX8!0.70!4.00!RFX8;;chr9:110252035..110252057,-!p1@KLF4!0.69!70.98!KLF4;;chr16:79633894..79633954,-!p3@MAF!0.68!7.99!MAF;;chr5:43067636..43067674,+!p6@ZNF131!0.68!5.39!ZNF131;;chr6:134210243..134210257,+!p1@TCF21!0.67!3.65!TCF21;;chr11:65687158..65687216,+!p4@DRAP1!0.66!23.37!DRAP1;;chr10:28035112..28035130,-!p5@MKX!0.66!3.56!MKX;;chr7:27192185..27192209,-!p1@HOXA3!0.66!3.56!HOXA3;;chr15:96873984..96873999,+!p3@NR2F2!0.65!29.89!NR2F2;;chr10:63809134..63809145,+!p6@ARID5B!0.65!8.86!ARID5B;;chr2:166326200..166326216,+!p1@CSRNP3!0.65!5.39!CSRNP3;;chr11:65667846..65667868,-!p1@FOSL1!0.64!105.13!FOSL1;;chr12:66218923..66218934,+!p14@HMGA2!0.64!3.39!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.64!3.39!HMGA2;;chr2:66662396..66662407,+!p4@MEIS1!0.64!3.39!MEIS1;;chr6:10412576..10412599,-!p5@TFAP2A!0.64!3.39!TFAP2A;;chr17:17726907..17726958,-!p2@SREBF1!0.63!23.98!SREBF1;;chr14:73360799..73360817,-!p1@DPF3!0.63!13.03!DPF3;;chr10:28032421..28032494,-!p2@MKX!0.63!3.30!MKX;;chr10:28035133..28035148,-!p3@MKX!0.63!3.30!MKX;;chr1:170632439..170632465,+!p11@PRRX1!0.63!3.30!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.63!3.30!PRRX1;;chr6:34204672..34204692,+!p1@HMGA1!0.62!427.64!HMGA1;;chr18:72922811..72922827,+!p1@TSHZ1!0.62!18.59!TSHZ1;;chr15:83953397..83953425,-!p1@BNC1!0.62!3.74!BNC1;;chr17:59533618..59533656,+!p2@TBX4!0.62!3.21!TBX4;;chr7:27205136..27205164,-!p1@HOXA9!0.62!3.13!HOXA9;;chr12:114843852..114843867,-!p3@TBX5!0.62!3.13!TBX5;;chr12:53625846..53625861,-!p6@RARG!0.62!3.13!RARG;;chr3:157824001..157824078,-!p2@SHOX2!0.62!3.13!SHOX2;;chr3:12329397..12329433,+!p2@PPARG!0.61!7.91!PPARG;;chr12:66218443..66218461,+!p8@HMGA2!0.61!4.08!HMGA2;;chr17:1958388..1958404,+!p1@HIC1!0.60!22.59!HIC1;;chr15:37392724..37392757,-!p1@MEIS2!0.60!16.07!MEIS2;;chr16:79634624..79634642,-!p1@MAF!0.60!13.81!MAF;;chr7:42276787..42276815,-!p1@GLI3!0.60!9.12!GLI3;;chr3:24536253..24536328,-!p1@THRB!0.60!6.34!THRB;;chr15:96874063..96874074,+!p10@NR2F2!0.60!6.17!NR2F2;;chr11:65686952..65686975,+!p5@DRAP1!0.59!19.03!DRAP1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.59!3.13!GLIS1;;chr5:50679228..50679288,+!p1@ISL1!0.59!2.87!ISL1;;chr9:16870710..16870763,-!p1@BNC2!0.58!5.39!BNC2;;chrX:66763815..66763854,+!p2@AR!0.58!3.91!AR;;chr19:45260775..45260838,+!p5@BCL3!0.58!3.91!BCL3;;chr10:31607702..31607755,+!p3@ZEB1!0.58!3.39!ZEB1;;chr10:31607811..31607837,+!p6@ZEB1!0.58!2.78!ZEB1;;chr11:46299186..46299195,+!p3@CREB3L1!0.57!3.13!CREB3L1;;chr1:119530493..119530572,-!p1@TBX15!0.57!2.69!TBX15;;chr1:170632310..170632321,+!p15@PRRX1!0.57!2.69!PRRX1;;chr2:145277640..145277771,-!p1@ZEB2!0.56!44.48!ZEB2;;chr3:114343768..114343822,-!p1@ZBTB20!0.56!13.99!ZBTB20;;chr21:30671690..30671762,+!p2@BACH1!0.56!10.60!BACH1;;chr15:96874244..96874259,+!p5@NR2F2!0.56!7.47!NR2F2;;chr11:46299443..46299459,+!p4@CREB3L1!0.56!2.61!CREB3L1;;chr7:27196267..27196311,-!p1@HOXA7!0.56!2.61!HOXA7;;chr8:49833978..49833996,-!p1@SNAI2!0.55!65.86!SNAI2;;chr3:178789522..178789564,-!p2@ZMAT3!0.55!23.11!ZMAT3;;chr12:53625966..53626012,-!p2@RARG!0.55!7.99!RARG;;chr4:81105027..81105039,+!p3@PRDM8!0.55!3.13!PRDM8;;chr18:53068911..53068935,-!p4@TCF4!0.55!2.95!TCF4;;chr8:93107451..93107468,-!p2@RUNX1T1!0.55!2.52!RUNX1T1;;chr2:66662510..66662521,+!p6@MEIS1!0.55!2.52!MEIS1;;chr12:115122262..115122271,-!p7@TBX3!0.55!2.52!TBX3;;chr2:46524537..46524553,+!p1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07..88969218,-!p7@ZCCHC6!0.16!0.43!ZCCHC6;;chrX:131622988..131623006,-!p8@MBNL3!0.16!0.43!MBNL3;;chr9:16871214..16871260,-!p11@BNC2!0.16!0.43!BNC2;;chr10:131635619..131635623,-!p6@EBF3!0.16!0.43!EBF3;;chr10:131762589..131762601,-!p3@EBF3!0.16!0.43!EBF3;;chr10:63853479..63853496,+!p21@ARID5B!0.16!0.43!ARID5B;;chr10:64133934..64133954,+!p6@ZNF365!0.16!0.43!ZNF365;;chr11:46333883..46333900,+!p8@CREB3L1!0.16!0.43!CREB3L1;;chr11:65668011..65668020,-!p3@FOSL1!0.16!0.43!FOSL1;;chr12:10871049..10871064,-!p19@CSDA!0.16!0.43!CSDA;;chr12:115122297..115122302,-!p15@TBX3!0.16!0.43!TBX3;;chr12:2968536..2968539,-!p3@FOXM1!0.16!0.43!FOXM1;;chr12:54366894..54366922,+!p2@HOXC11!0.16!0.43!HOXC11;;chr12:54378984..54378996,+!p7@HOXC10!0.16!0.43!HOXC10;;chr12:54379745..54379749,+!p6@HOXC5!0.16!0.43!HOXC5;;chr12:54394416..54394467,+!p5@HOXC9!0.16!0.43!HOXC9;;chr12:66218037..66218042,+!p18@HMGA2!0.16!0.43!HMGA2;;chr12:66218413..66218418,+!p17@HMGA2!0.16!0.43!HMGA2;;chr12:66357586..66357600,+!p20@HMGA2!0.16!0.43!HMGA2;;chr5:124082525..124082536,-!p10@ZNF608!0.16!0.43!ZNF608;;chr5:174151612..174151633,+!p2@MSX2!0.16!0.43!MSX2;;chr5:322733..322758,+!p2@AHRR!0.16!0.43!AHRR;;chr7:150945865..150945896,-!p4@SMARCD3!0.16!0.43!SMARCD3;;chr8:30890810..30890880,-!p1@PURG!0.16!0.43!PURG;;chr8:72756194..72756208,-!p9@MSC!0.16!0.43!MSC;;chr8:93115445..93115462,-!p7@RUNX1T1!0.16!0.43!RUNX1T1;;chr9:100616439..100616476,+!p3@FOXE1!0.16!0.43!FOXE1;;chr22:41763452..41763466,+!p2@TEF!0.16!0.43!TEF;;chr2:102091478..102091490,-!p3@RFX8!0.16!0.43!RFX8;;chr2:102091514..102091528,-!p6@RFX8!0.16!0.43!RFX8;;chr2:200323212..200323223,-!p8@SATB2!0.16!0.43!SATB2;;chr2:46612891..46612907,+!p10@EPAS1!0.16!0.43!EPAS1;;chr2:74726710..74726736,-!p3@LBX2!0.16!0.43!LBX2;;chr3:114343039..114343085,-!p8@ZBTB20!0.16!0.43!ZBTB20;;chr3:128212033..128212051,-!p1@GATA2!0.16!0.43!GATA2;;chr3:147110055..147110129,-!p1@ZIC4!0.16!0.43!ZIC4;;chr3:157824202..157824211,-!p3@SHOX2!0.16!0.43!SHOX2;;chr3:44596664..44596672,+!p2@ZNF167!0.16!0.43!ZNF167;;chr4:26322673..26322684,+!p11@RBPJ!0.16!0.43!RBPJ;;chr15:61521462..61521482,-!p4@RORA!0.16!0.43!RORA;;chr15:96869394..96869405,+!p25@NR2F2!0.16!0.43!NR2F2;;chr16:49698178..49698209,-!p1@ZNF423!0.16!0.43!ZNF423;;chr16:79633883..79633892,-!p6@MAF!0.16!0.43!MAF;;chr16:86612046..86612065,+!p3@FOXL1!0.16!0.43!FOXL1;;chr17:38487563..38487578,+!p10@RARA!0.16!0.43!RARA;;chr19:12267492..12267505,-!p2@ZNF625,p3@ZNF20!0.16!0.43!ZNF625;;chr19:13135832..13135853,+!p16@NFIX!0.16!0.43!NFIX;;chr19:13136057..13136085,+!p11@NFIX!0.16!0.43!NFIX;;chr19:19976620..19976631,+!p4@ZNF253!0.16!0.43!ZNF253;;chr19:50542543..50542548,+!p2@ZNF473!0.16!0.43!ZNF473;;chr1:110613276..110613299,-!p2@ALX3!0.16!0.43!ALX3;;chr1:212873200..212873230,-!p5@BATF3!0.16!0.43!BATF3;;chr1:23694532..23694549,-!p8@ZNF436!0.16!0.43!ZNF436;;chr1:8586084..8586100,-!p20@RERE!0.16!0.43!RERE;;chr21:36259830..36259842,-!p30@RUNX1!0.16!0.43!RUNX1;;chr6:34204642..34204664,+!p2@HMGA1!0.15!171.07!HMGA1;;chr2:231280908..231280945,+!p1@SP100!0.15!49.44!SP100;;chr12:12764773..12764852,+!p1@CREBL2!0.15!31.80!CREBL2;;chr10:114709999..114710031,+!p1@TCF7L2!0.15!30.15!TCF7L2;;chr12:51157837..51157892,+!p1@ATF1!0.15!27.46!ATF1;;chr4:76439665..76439699,+!p1@THAP6!0.15!17.20!THAP6;;chr11:10879572..10879591,-!p2@ZBED5!0.15!16.59!ZBED5;;chr17:7387524..7387597,-!p1@ZBTB4!0.15!11.38!ZBTB4;;chr19:53193731..53193767,-!p1@ZNF83!0.15!10.86!ZNF83;;chr19:18392236..18392248,-!p2@JUND!0.15!7.73!JUND;;chr10:104155480..104155534,+!p2@NFKB2!0.15!7.56!NFKB2;;
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.82!73.59!PRRX1;;chr4:81118647..81118666,+!p1@PRDM8!1.80!80.19!PRDM8;;chr2:239756671..239756732,+!p1@TWIST2!1.79!186.02!TWIST2;;chr10:28034739..28034756,-!p1@MKX!1.74!53.87!MKX;;chr7:19157248..19157268,-!p1@TWIST1!1.69!127.81!TWIST1;;chr15:57511609..57511651,+!p2@TCF12!1.62!67.86!TCF12;;chr3:141121847..141121868,+!p5@ZBTB38!1.58!55.26!ZBTB38;;chr1:170633348..170633399,+!p2@PRRX1!1.50!41.10!PRRX1;;chr7:27224842..27224872,-!p1@HOXA11!1.49!29.89!HOXA11;;chr2:239756739..239756755,+!p2@TWIST2!1.45!45.87!TWIST2;;chr6:1389789..1389821,+!p1@FOXF2!1.43!35.71!FOXF2;;chr7:27224795..27224840,-!p2@HOXA11!1.41!24.50!HOXA11;;chr12:66218255..66218304,+!p3@HMGA2!1.36!57.69!HMGA2;;chr15:42749722..42749739,-!p2@ZFP106!1.36!38.49!ZFP106;;chr17:59529743..59529798,+!p1@TBX4!1.35!21.37!TBX4;;chr9:132427883..132427951,+!p2@PRRX2!1.33!20.59!PRRX2;;chr12:66218598..66218645,+!p2@HMGA2!1.30!85.49!HMGA2;;chr5:134369905..134369972,-!p1@PITX1!1.30!29.19!PITX1;;chr9:132427972..132428056,+!p1@PRRX2!1.30!24.41!PRRX2;;chr17:59477233..59477263,+!p1@TBX2!1.27!54.30!TBX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.25!85.49!CREB3L1;;chr6:10415276..10415341,-!p2@TFAP2A!1.24!19.98!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.23!26.59!TFAP2A;;chr6:100912752..100912778,-!p2@SIM1!1.21!15.12!SIM1;;chr8:99956662..99956684,+!p1@OSR2!1.18!21.72!OSR2;;chr1:170633262..170633285,+!p3@PRRX1!1.17!15.64!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!1.16!124.76!HMGA2;;chr12:114845810..114845824,-!p1@TBX5!1.16!13.38!TBX5;;chr1:170632250..170632277,+!p7@PRRX1!1.15!13.03!PRRX1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.14!12.86!RUNX1T1;;chr18:52969844..52969895,-!p27@TCF4!1.13!12.42!TCF4;;chr5:134369879..134369898,-!p2@PITX1!1.11!11.90!PITX1;;chr6:1312325..1312340,+!p1@FOXQ1!1.08!18.16!FOXQ1;;chr3:157823517..157823562,-!p1@SHOX2!1.07!11.64!SHOX2;;chr14:61116183..61116208,-!p1@SIX1!1.06!40.14!SIX1;;chr11:65686802..65686818,+!p6@DRAP1!1.06!18.42!DRAP1;;chr17:59477275..59477286,+!p3@TBX2!1.06!14.16!TBX2;;chr6:100912785..100912822,-!p1@SIM1!1.05!10.34!SIM1;;chr3:141121871..141121885,+!p13@ZBTB38!1.05!10.17!ZBTB38;;chr19:13134772..13134822,+!p2@NFIX!1.04!14.94!NFIX;;chr3:141121820..141121838,+!p9@ZBTB38!1.04!9.90!ZBTB38;;chr7:44143925..44143970,+!p1@AEBP1!1.01!207.65!AEBP1;;chr11:65667884..65667895,-!p2@FOSL1!1.01!36.14!FOSL1;;chr6:34204921..34204939,+!p3@HMGA1!1.00!275.94!HMGA1;;chr12:115122318..115122331,-!p2@TBX3!1.00!9.04!TBX3;;chrY:21906594..21906622,-!p1@KDM5D!1.00!9.04!KDM5D;;chr11:65687362..65687436,+!p3@DRAP1!0.99!40.92!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!0.99!9.56!PRRX1;;chr5:321810..321877,+!p1@AHRR!0.97!27.37!AHRR;;chr14:24837368..24837401,+!p1@NFATC4!0.97!20.07!NFATC4;;chr12:66218212..66218244,+!p5@HMGA2!0.97!12.34!HMGA2;;chr12:115121802..115121814,-!p5@TBX3!0.95!7.99!TBX3;;chr1:170632723..170632739,+!p8@PRRX1!0.95!7.82!PRRX1;;chr1:170632137..170632172,+!p10@PRRX1!0.93!7.56!PRRX1;;chr7:27213893..27213954,-!p1@HOXA10!0.93!7.56!HOXA10;;chr12:66218183..66218209,+!p4@HMGA2!0.92!14.60!HMGA2;;chr12:115121770..115121781,-!p4@TBX3!0.91!7.12!TBX3;;chr7:14029283..14029311,-!p1@ETV1!0.90!38.66!ETV1;;chr7:14028488..14028516,-!p2@ETV1!0.90!7.65!ETV1;;chrY:2803415..2803468,+!p1@ZFY!0.90!6.86!ZFY;;chr2:102091566..102091581,-!p1@RFX8!0.90!6.86!RFX8;;chr12:115121962..115121987,-!p1@TBX3!0.89!59.86!TBX3;;chr11:46299539..46299620,+!p2@CREB3L1!0.89!11.82!CREB3L1;;chr2:223163706..223163730,-!p1@PAX3!0.89!6.69!PAX3;;chr6:1389824..1389840,+!p3@FOXF2!0.89!6.69!FOXF2;;chr7:44143978..44143989,+!p2@AEBP1!0.88!12.34!AEBP1;;chr15:76629123..76629151,+!p1@ISL2!0.88!7.39!ISL2;;chr12:53614115..53614154,-!p1@RARG!0.87!36.32!RARG;;chr6:85474299..85474324,-!p1@TBX18!0.87!11.99!TBX18;;chr15:96869114..96869160,+!p11@NR2F2!0.86!8.60!NR2F2;;chr11:65687222..65687240,+!p7@DRAP1!0.86!8.25!DRAP1;;chr18:52969674..52969685,-!p24@TCF4!0.86!6.17!TCF4;;chr10:63809106..63809127,+!p1@ARID5B!0.85!88.27!ARID5B;;chr11:65686732..65686756,+!p2@DRAP1!0.85!27.28!DRAP1;;chr15:96869255..96869291,+!p6@NR2F2!0.85!11.47!NR2F2;;chr20:55204351..55204377,+!p1@TFAP2C!0.85!7.82!TFAP2C;;chr1:170632115..170632136,+!p9@PRRX1!0.85!6.08!PRRX1;;chr7:27239740..27239759,-!p2@HOXA13!0.85!6.08!HOXA13;;chr8:93074848..93074871,-!p3@RUNX1T1!0.84!5.99!RUNX1T1;;chr12:66357214..66357233,+!p13@HMGA2!0.84!5.91!HMGA2;;chr2:66662281..66662308,+!p1@MEIS1!0.83!20.94!MEIS1;;chr2:19558373..19558392,-!p1@OSR1!0.83!16.77!OSR1;;chr7:113726357..113726443,+!p1@FOXP2!0.83!10.34!FOXP2;;chr11:65687243..65687276,+!p8@DRAP1!0.83!7.99!DRAP1;;chr12:66218904..66218913,+!p11@HMGA2!0.83!5.82!HMGA2;;chr1:170632477..170632506,+!p6@PRRX1!0.83!5.82!PRRX1;;chr12:114843940..114843955,-!p2@TBX5!0.83!5.73!TBX5;;chr16:86544113..86544145,+!p1@FOXF1!0.82!7.12!FOXF1;;chrX:66763856..66763896,+!p1@AR!0.81!8.17!AR;;chr8:25902876..25902936,-!p1@EBF2!0.81!5.39!EBF2;;chr7:19157043..19157088,-!p2@TWIST1!0.80!14.34!TWIST1;;chr7:27239703..27239715,-!p1@HOXA13!0.80!5.30!HOXA13;;chr15:96874012..96874042,+!p2@NR2F2!0.7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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001264;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002323
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 45:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Pancreatic%2520stromal%2520cells%252c%2520donor1.CNhs10877.11249-116E7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Pancreatic%2520stromal%2520cells%252c%2520donor1.CNhs10877.11249-116E7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Pancreatic%2520stromal%2520cells%252c%2520donor1.CNhs10877.11249-116E7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Pancreatic%2520stromal%2520cells%252c%2520donor1.CNhs10877.11249-116E7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Pancreatic%2520stromal%2520cells%252c%2520donor1.CNhs10877.11249-116E7.hg38.nobarcode.ctss.bed.gz
|id=FF:11249-116E7
|id=FF:11249-116E7
|is_a=EFO:0002091;;FF:0000042;;FF:0000146
|is_a=EFO:0002091;;FF:0000042;;FF:0000146
Line 46: Line 55:
|library_id=CNhs10877
|library_id=CNhs10877
|library_id_phase_based=2:CNhs10877
|library_id_phase_based=2:CNhs10877
|name="Pancreatic stromal cells, donor1"
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11249
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.ACTTGA.11249
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11249
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.ACTTGA.11249
|name=Pancreatic stromal cells, donor1
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=NCig10046,,,
|profile_cagescan=NCig10046,,,
|profile_hcage="CNhs10877,LSID703,release008,COMPLETED"
|profile_hcage=CNhs10877,LSID703,release008,COMPLETED
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq="SRhi10003,,,"
|profile_srnaseq=SRhi10003,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 90: Line 107:
|top_motifs=ZNF238:2.14110736379;GZF1:1.55302192738;NKX2-2,8:1.51476974551;ALX4:1.27574559062;TFAP4:1.19401129772;UFEwm:1.13573199018;NKX6-1,2:1.13414504642;RXR{A,B,G}:1.12090533091;HOX{A4,D4}:1.10385104389;HAND1,2:1.06711420311;TP53:1.00141525195;PAX1,9:0.967216245342;YY1:0.953555300585;EN1,2:0.923132152645;GFI1:0.920155952869;LHX3,4:0.908189134647;HSF1,2:0.89222429075;TAL1_TCF{3,4,12}:0.881987699111;TEAD1:0.864765591767;SPZ1:0.830976516144;KLF4:0.827976970761;MZF1:0.773204479546;GTF2I:0.772216833699;GFI1B:0.740902313156;ESR1:0.71522424007;GATA4:0.703939178338;NKX3-2:0.700244434974;NFATC1..3:0.689172002973;MYBL2:0.683440722776;PRDM1:0.672498548156;FOXL1:0.666368036749;CDC5L:0.66103971174;ARID5B:0.658436021649;PDX1:0.65343790442;STAT1,3:0.585038041967;MYB:0.577624924755;TFCP2:0.567235299077;HES1:0.565072879156;TBX4,5:0.543803334954;EVI1:0.542293449763;TOPORS:0.513034256386;EBF1:0.512193289864;FOXO1,3,4:0.50905699096;ZIC1..3:0.50134071588;HMGA1,2:0.485703281079;POU3F1..4:0.47882073552;SREBF1,2:0.472090892002;PATZ1:0.458456455938;GTF2A1,2:0.456747292257;TLX1..3_NFIC{dimer}:0.455860572337;MAZ:0.438947499657;TFDP1:0.437521997921;NR3C1:0.430135583324;XBP1:0.429078913763;SOX17:0.409201983466;FOX{I1,J2}:0.405850509049;ZNF384:0.40292069646;FOXD3:0.397114813487;DMAP1_NCOR{1,2}_SMARC:0.396957617351;HBP1_HMGB_SSRP1_UBTF:0.376614007798;SRF:0.3718383519;NFIX:0.362471140749;ZNF423:0.343516815025;ZBTB6:0.331054209448;TEF:0.322719794479;NANOG{mouse}:0.317409387366;FOXQ1:0.304280352743;NFE2L2:0.299491517931;TLX2:0.29553222027;TFAP2{A,C}:0.28260985029;IRF1,2:0.276048892695;bHLH_family:0.248756902475;ZNF143:0.23004636995;NKX2-3_NKX2-5:0.228229370596;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.220972842139;RREB1:0.210321453764;ATF6:0.206235623192;POU5F1:0.195749039745;AHR_ARNT_ARNT2:0.192458568459;NRF1:0.192187561445;E2F1..5:0.191116892867;MYFfamily:0.176706001875;FOXM1:0.170133111803;NKX3-1:0.160312701375;GCM1,2:0.146390371868;HLF:0.144255135269;ELK1,4_GABP{A,B1}:0.142930321808;STAT5{A,B}:0.137591956875;SP1:0.135667309411;NR1H4:0.125559611241;HNF4A_NR2F1,2:0.120220036709;HMX1:0.114605229731;AIRE:0.110380206056;HOX{A5,B5}:0.0889327155707;BACH2:0.0844685539354;PAX5:0.0725837614139;HNF1A:0.0673254591939;LEF1_TCF7_TCF7L1,2:0.066015788539;MTE{core}:0.0653479682656;RFX1:0.0593856750466;ZNF148:0.044007959303;PAX4:0.0412303127143;PAX8:0.0394431606672;SMAD1..7,9:0.0302824665445;ESRRA:0.0244849270532;NFE2L1:0.0140383820342;FOS_FOS{B,L1}_JUN{B,D}:0.0123216106225;HOX{A6,A7,B6,B7}:-0.00257679816896;GLI1..3:-0.00406608214916;RXRA_VDR{dimer}:-0.00461690021376;IKZF1:-0.00788179499416;MTF1:-0.0197547804529;NFY{A,B,C}:-0.0201336993561;HIC1:-0.0258862165993;NHLH1,2:-0.0369799321552;ALX1:-0.0428602156547;TFAP2B:-0.0442531648831;NR6A1:-0.0477654818367;MAFB:-0.0698529223647;T:-0.0748810085053;TBP:-0.0809880029576;TGIF1:-0.109097415241;ADNP_IRX_SIX_ZHX:-0.11038993327;NFE2:-0.12809768582;PRRX1,2:-0.131014153235;FOXP1:-0.156586416274;REST:-0.163335835994;XCPE1{core}:-0.178085694931;RBPJ:-0.17995003701;EGR1..3:-0.185630556192;HOXA9_MEIS1:-0.216756482172;DBP:-0.220363275731;FOSL2:-0.222739085047;RUNX1..3:-0.239829109376;CEBPA,B_DDIT3:-0.263283434238;STAT2,4,6:-0.281364708664;POU2F1..3:-0.28372456246;NKX2-1,4:-0.291084490977;RFX2..5_RFXANK_RFXAP:-0.296349326204;MED-1{core}:-0.313516811217;NFKB1_REL_RELA:-0.321690142349;PAX3,7:-0.325007808219;PBX1:-0.356509103438;ZFP161:-0.362957132899;IRF7:-0.390618326973;CREB1:-0.401302052365;ELF1,2,4:-0.405180504925;CRX:-0.407412546613;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.41678434138;MEF2{A,B,C,D}:-0.421839385013;BPTF:-0.428427336885;CDX1,2,4:-0.448337489734;SPI1:-0.448829626166;ONECUT1,2:-0.452823556285;FOXN1:-0.465927912159;FOX{D1,D2}:-0.473683797753;BREu{core}:-0.501425259409;HIF1A:-0.510834549759;SPIB:-0.520958756504;ZBTB16:-0.530204284816;PAX2:-0.530870841443;JUN:-0.532025072624;ATF5_CREB3:-0.546720839067;ATF4:-0.567938911817;CUX2:-0.585799649;ETS1,2:-0.617297947178;PITX1..3:-0.620386915663;OCT4_SOX2{dimer}:-0.654519925508;LMO2:-0.658766195302;NFIL3:-0.660386465234;FOXA2:-0.664342835218;PPARG:-0.70197628389;SNAI1..3:-0.719359573716;SOX5:-0.754159409432;AR:-0.779588194765;IKZF2:-0.804029810365;ATF2:-0.812451068194;NR5A1,2:-0.82083052466;EP300:-0.860253647131;POU1F1:-0.878917886497;GATA6:-0.879865057221;PAX6:-0.905842288081;SOX2:-0.917244530833;VSX1,2:-0.92265492149;ZEB1:-1.01218802404;FOXP3:-1.01367684831;POU6F1:-1.04462708209;MYOD1:-1.09138114776;SOX{8,9,10}:-1.13046628727;RORA:-1.20555634234;NANOG:-1.25325672126;FOX{F1,F2,J1}:-1.51067432229
|top_motifs=ZNF238:2.14110736379;GZF1:1.55302192738;NKX2-2,8:1.51476974551;ALX4:1.27574559062;TFAP4:1.19401129772;UFEwm:1.13573199018;NKX6-1,2:1.13414504642;RXR{A,B,G}:1.12090533091;HOX{A4,D4}:1.10385104389;HAND1,2:1.06711420311;TP53:1.00141525195;PAX1,9:0.967216245342;YY1:0.953555300585;EN1,2:0.923132152645;GFI1:0.920155952869;LHX3,4:0.908189134647;HSF1,2:0.89222429075;TAL1_TCF{3,4,12}:0.881987699111;TEAD1:0.864765591767;SPZ1:0.830976516144;KLF4:0.827976970761;MZF1:0.773204479546;GTF2I:0.772216833699;GFI1B:0.740902313156;ESR1:0.71522424007;GATA4:0.703939178338;NKX3-2:0.700244434974;NFATC1..3:0.689172002973;MYBL2:0.683440722776;PRDM1:0.672498548156;FOXL1:0.666368036749;CDC5L:0.66103971174;ARID5B:0.658436021649;PDX1:0.65343790442;STAT1,3:0.585038041967;MYB:0.577624924755;TFCP2:0.567235299077;HES1:0.565072879156;TBX4,5:0.543803334954;EVI1:0.542293449763;TOPORS:0.513034256386;EBF1:0.512193289864;FOXO1,3,4:0.50905699096;ZIC1..3:0.50134071588;HMGA1,2:0.485703281079;POU3F1..4:0.47882073552;SREBF1,2:0.472090892002;PATZ1:0.458456455938;GTF2A1,2:0.456747292257;TLX1..3_NFIC{dimer}:0.455860572337;MAZ:0.438947499657;TFDP1:0.437521997921;NR3C1:0.430135583324;XBP1:0.429078913763;SOX17:0.409201983466;FOX{I1,J2}:0.405850509049;ZNF384:0.40292069646;FOXD3:0.397114813487;DMAP1_NCOR{1,2}_SMARC:0.396957617351;HBP1_HMGB_SSRP1_UBTF:0.376614007798;SRF:0.3718383519;NFIX:0.362471140749;ZNF423:0.343516815025;ZBTB6:0.331054209448;TEF:0.322719794479;NANOG{mouse}:0.317409387366;FOXQ1:0.304280352743;NFE2L2:0.299491517931;TLX2:0.29553222027;TFAP2{A,C}:0.28260985029;IRF1,2:0.276048892695;bHLH_family:0.248756902475;ZNF143:0.23004636995;NKX2-3_NKX2-5:0.228229370596;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.220972842139;RREB1:0.210321453764;ATF6:0.206235623192;POU5F1:0.195749039745;AHR_ARNT_ARNT2:0.192458568459;NRF1:0.192187561445;E2F1..5:0.191116892867;MYFfamily:0.176706001875;FOXM1:0.170133111803;NKX3-1:0.160312701375;GCM1,2:0.146390371868;HLF:0.144255135269;ELK1,4_GABP{A,B1}:0.142930321808;STAT5{A,B}:0.137591956875;SP1:0.135667309411;NR1H4:0.125559611241;HNF4A_NR2F1,2:0.120220036709;HMX1:0.114605229731;AIRE:0.110380206056;HOX{A5,B5}:0.0889327155707;BACH2:0.0844685539354;PAX5:0.0725837614139;HNF1A:0.0673254591939;LEF1_TCF7_TCF7L1,2:0.066015788539;MTE{core}:0.0653479682656;RFX1:0.0593856750466;ZNF148:0.044007959303;PAX4:0.0412303127143;PAX8:0.0394431606672;SMAD1..7,9:0.0302824665445;ESRRA:0.0244849270532;NFE2L1:0.0140383820342;FOS_FOS{B,L1}_JUN{B,D}:0.0123216106225;HOX{A6,A7,B6,B7}:-0.00257679816896;GLI1..3:-0.00406608214916;RXRA_VDR{dimer}:-0.00461690021376;IKZF1:-0.00788179499416;MTF1:-0.0197547804529;NFY{A,B,C}:-0.0201336993561;HIC1:-0.0258862165993;NHLH1,2:-0.0369799321552;ALX1:-0.0428602156547;TFAP2B:-0.0442531648831;NR6A1:-0.0477654818367;MAFB:-0.0698529223647;T:-0.0748810085053;TBP:-0.0809880029576;TGIF1:-0.109097415241;ADNP_IRX_SIX_ZHX:-0.11038993327;NFE2:-0.12809768582;PRRX1,2:-0.131014153235;FOXP1:-0.156586416274;REST:-0.163335835994;XCPE1{core}:-0.178085694931;RBPJ:-0.17995003701;EGR1..3:-0.185630556192;HOXA9_MEIS1:-0.216756482172;DBP:-0.220363275731;FOSL2:-0.222739085047;RUNX1..3:-0.239829109376;CEBPA,B_DDIT3:-0.263283434238;STAT2,4,6:-0.281364708664;POU2F1..3:-0.28372456246;NKX2-1,4:-0.291084490977;RFX2..5_RFXANK_RFXAP:-0.296349326204;MED-1{core}:-0.313516811217;NFKB1_REL_RELA:-0.321690142349;PAX3,7:-0.325007808219;PBX1:-0.356509103438;ZFP161:-0.362957132899;IRF7:-0.390618326973;CREB1:-0.401302052365;ELF1,2,4:-0.405180504925;CRX:-0.407412546613;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.41678434138;MEF2{A,B,C,D}:-0.421839385013;BPTF:-0.428427336885;CDX1,2,4:-0.448337489734;SPI1:-0.448829626166;ONECUT1,2:-0.452823556285;FOXN1:-0.465927912159;FOX{D1,D2}:-0.473683797753;BREu{core}:-0.501425259409;HIF1A:-0.510834549759;SPIB:-0.520958756504;ZBTB16:-0.530204284816;PAX2:-0.530870841443;JUN:-0.532025072624;ATF5_CREB3:-0.546720839067;ATF4:-0.567938911817;CUX2:-0.585799649;ETS1,2:-0.617297947178;PITX1..3:-0.620386915663;OCT4_SOX2{dimer}:-0.654519925508;LMO2:-0.658766195302;NFIL3:-0.660386465234;FOXA2:-0.664342835218;PPARG:-0.70197628389;SNAI1..3:-0.719359573716;SOX5:-0.754159409432;AR:-0.779588194765;IKZF2:-0.804029810365;ATF2:-0.812451068194;NR5A1,2:-0.82083052466;EP300:-0.860253647131;POU1F1:-0.878917886497;GATA6:-0.879865057221;PAX6:-0.905842288081;SOX2:-0.917244530833;VSX1,2:-0.92265492149;ZEB1:-1.01218802404;FOXP3:-1.01367684831;POU6F1:-1.04462708209;MYOD1:-1.09138114776;SOX{8,9,10}:-1.13046628727;RORA:-1.20555634234;NANOG:-1.25325672126;FOX{F1,F2,J1}:-1.51067432229
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11249-116E7;search_select_hide=table117:FF:11249-116E7
}}
}}

Latest revision as of 16:27, 3 June 2020

Name:Pancreatic stromal cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10877
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuepancreas
dev stage39 years old adult
sexmale
age39
cell typepancreatic stromal cell
cell lineNA
companyCell systems
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005906
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10877 CAGE DRX008395 DRR009267
Accession ID Hg19

Library idBAMCTSS
CNhs10877 DRZ000692 DRZ002077
Accession ID Hg38

Library idBAMCTSS
CNhs10877 DRZ012042 DRZ013427
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10046downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005906
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10003.ACTTGA sRNA-Seq DRX037017 DRR041383
Accession ID Hg19

Library idBAMCTSS
SRhi10003.ACTTGA DRZ007025


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.049
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.252
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.525
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0606
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.124
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0696
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.552
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.175
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.118
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0798
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD45.368574e-4
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0696
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0696
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.137
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.157
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0696
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.101
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.101
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.104
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.206
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.291
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0362
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.394
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10877

Jaspar motifP-value
MA0002.20.0444
MA0003.10.67
MA0004.10.403
MA0006.10.306
MA0007.10.674
MA0009.10.756
MA0014.10.91
MA0017.10.296
MA0018.25.25978e-7
MA0019.10.798
MA0024.10.31
MA0025.10.00116
MA0027.10.592
MA0028.10.732
MA0029.10.804
MA0030.10.0798
MA0031.10.182
MA0035.20.0091
MA0038.10.701
MA0039.20.27
MA0040.10.757
MA0041.10.737
MA0042.10.877
MA0043.15.25152e-6
MA0046.10.976
MA0047.20.245
MA0048.10.0107
MA0050.10.883
MA0051.10.436
MA0052.10.122
MA0055.10.287
MA0057.10.3
MA0058.10.385
MA0059.10.137
MA0060.10.0287
MA0061.10.0213
MA0062.27.06142e-5
MA0065.20.116
MA0066.10.411
MA0067.10.00201
MA0068.10.895
MA0069.10.121
MA0070.10.98
MA0071.10.385
MA0072.10.254
MA0073.10.845
MA0074.10.594
MA0076.10.663
MA0077.10.159
MA0078.10.153
MA0079.20.611
MA0080.25.52576e-10
MA0081.10.0331
MA0083.10.867
MA0084.10.0134
MA0087.10.8
MA0088.10.0296
MA0090.10.0129
MA0091.10.0484
MA0092.10.534
MA0093.10.44
MA0099.20.007
MA0100.10.598
MA0101.10.0145
MA0102.20.462
MA0103.19.37311e-5
MA0104.20.0181
MA0105.10.85
MA0106.10.0179
MA0107.18.79082e-4
MA0108.20.732
MA0111.10.206
MA0112.20.439
MA0113.10.97
MA0114.10.142
MA0115.10.499
MA0116.10.93
MA0117.10.0979
MA0119.10.65
MA0122.10.271
MA0124.10.672
MA0125.10.418
MA0131.10.897
MA0135.10.379
MA0136.18.67073e-11
MA0137.20.756
MA0138.20.78
MA0139.10.698
MA0140.10.0117
MA0141.10.308
MA0142.10.0359
MA0143.10.983
MA0144.10.693
MA0145.10.684
MA0146.10.836
MA0147.10.0262
MA0148.10.0974
MA0149.10.94
MA0150.10.00172
MA0152.10.0213
MA0153.10.217
MA0154.10.599
MA0155.10.949
MA0156.17.8661e-8
MA0157.10.201
MA0159.10.337
MA0160.10.0572
MA0162.10.0121
MA0163.10.0484
MA0164.10.915
MA0258.10.312
MA0259.10.382



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10877

Novel motifP-value
10.227
100.515
1000.379
1010.666
1020.155
1030.949
1040.766
1050.416
1060.101
1070.803
1080.324
1090.824
110.693
1100.431
1110.131
1120.924
1131.12255e-4
1140.514
1150.213
1160.23
1170.361
1180.917
1190.105
120.369
1200.328
1210.343
1220.00808
1230.00121
1240.798
1250.606
1260.685
1270.673
1280.838
1290.445
130.544
1300.115
1310.206
1320.21
1330.183
1340.433
1350.28
1360.997
1370.0948
1380.0927
1392.8164e-5
140.181
1400.282
1410.0653
1420.662
1430.486
1440.375
1450.921
1460.726
1470.22
1480.284
1490.386
150.0781
1500.269
1510.384
1520.388
1530.874
1540.753
1556.08828e-4
1560.939
1570.0577
1586.80512e-4
1590.179
160.353
1600.696
1610.602
1620.754
1630.529
1640.888
1650.628
1660.088
1670.342
1680.848
1690.174
170.615
180.972
190.00308
20.641
200.588
210.0105
220.6
230.376
240.961
250.25
260.707
270.963
280.27
290.679
30.735
300.348
310.898
321.03259e-4
330.757
340.897
350.194
360.0285
370.0789
380.21
390.381
40.0176
400.0304
410.325
420.251
430.347
440.984
450.982
460.622
470.758
480.671
490.0471
50.24
500.342
510.846
520.784
530.262
540.624
550.19
560.913
570.73
580.13
590.722
60.696
600.0886
610.509
620.202
630.868
640.513
650.527
660.862
670.853
680.666
690.448
70.0319
700.0449
710.503
720.684
730.34
740.082
750.77
760.846
770.331
780.071
790.048
80.933
800.104
810.524
820.575
830.125
840.994
850.359
860.288
870.137
880.335
890.781
90.582
900.113
910.772
920.711
930.385
940.436
950.202
960.298
970.545
980.122
990.00261



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10877


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000255 (eukaryotic cell)
0002574 (stromal cell of pancreas)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001264 (pancreas)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000042 (pancreatic stromal cell)
0000146 (human stromal cell of pancreas sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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