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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005104
|DRA_sample_Accession=CAGE@SAMD00005104
|accession_numbers=CAGE;DRX008206;DRR009078;DRZ000503;DRZ001888
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005104
|accession_numbers=CAGE;DRX008206;DRR009078;DRZ000503;DRZ001888;DRZ011853;DRZ013238
|accession_numbers_RNASeq=sRNA-Seq;DRX037227;DRR041593;DRZ007235
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000020,UBERON:0010371,UBERON:0002203,UBERON:0001768,UBERON:0000488,UBERON:0007625,UBERON:0001032,UBERON:0002049,UBERON:0002200,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001778,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0004535,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0001775,UBERON:0010230,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000020,UBERON:0010371,UBERON:0002203,UBERON:0001768,UBERON:0000488,UBERON:0007625,UBERON:0001032,UBERON:0002049,UBERON:0002200,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001778,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0004535,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0001775,UBERON:0010230,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000064,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000067,CL:0005012,CL:0002304
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000064,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000067,CL:0005012,CL:0002304
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|def=
|def=
|expression_enrichment_score=chr6:45296048..45296082,+!p1@RUNX2!1.94!97.47!RUNX2;;chr11:31839488..31839515,-!p3@PAX6!1.91!79.79!PAX6;;chr11:31832658..31832681,-!p1@PAX6!1.73!52.09!PAX6;;chr13:72441315..72441454,-!p1@DACH1!1.71!96.99!DACH1;;chr1:197886461..197886558,+!p1@LHX9!1.68!46.70!LHX9;;chr3:147127142..147127168,+!p1@ZIC1!1.63!41.22!ZIC1;;chr3:147127177..147127194,+!p2@ZIC1!1.58!37.34!ZIC1;;chr2:45168875..45168916,+!p1@SIX3!1.57!36.11!SIX3;;chr9:77112244..77112262,+!p1@RORB!1.55!38.19!RORB;;chr2:45169193..45169219,+!p3@SIX3!1.54!33.65!SIX3;;chr5:92918919..92918942,+!p1@NR2F1!1.52!136.79!NR2F1;;chr2:45168834..45168847,+!p2@SIX3!1.50!30.72!SIX3;;chr3:181429704..181429722,+!p1@SOX2!1.49!29.87!SOX2;;chrX:139587228..139587234,-!p1@SOX3!1.46!27.89!SOX3;;chr14:60975883..60975911,+!p1@SIX6!1.45!27.32!SIX6;;chr7:35293685..35293718,-!p1@TBX20!1.40!24.11!TBX20;;chr14:29235961..29236008,+!p1@FOXG1!1.40!24.01!FOXG1;;chr4:8873545..8873583,-!p1@HMX1!1.37!22.22!HMX1;;chr2:63277948..63277974,+!p1@OTX1!1.37!22.22!OTX1;;chr9:126774018..126774055,+!p1@LHX2!1.35!21.18!LHX2;;chr12:66218255..66218304,+!p3@HMGA2!1.31!51.62!HMGA2;;chr3:25470156..25470227,+!p2@RARB!1.28!17.96!RARB;;chr13:72441074..72441172,-!p2@DACH1!1.27!17.58!DACH1;;chr14:60975858..60975869,+!p2@SIX6!1.26!17.39!SIX6;;chr12:66218183..66218209,+!p4@HMGA2!1.25!31.76!HMGA2;;chr3:170076314..170076334,+!p2@SKIL!1.25!21.65!SKIL;;chrX:136648279..136648295,+!p1@ZIC3!1.25!16.64!ZIC3;;chr12:66218598..66218645,+!p2@HMGA2!1.22!70.43!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.22!22.50!HMGA2;;chr11:31832610..31832639,-!p5@PAX6!1.21!15.22!PAX6;;chr14:29234581..29234601,+!p2@FOXG1!1.20!14.84!FOXG1;;chr13:100634031..100634045,+!p1@ZIC2!1.20!14.75!ZIC2;;chr18:56940611..56940660,-!p1@RAX!1.19!14.65!RAX;;chr20:30433396..30433414,-!p1@FOXS1!1.18!14.27!FOXS1;;chr3:147111231..147111281,+!p3@ZIC1!1.17!13.90!ZIC1;;chr3:147139053..147139112,+!p5@ZIC1!1.17!13.90!ZIC1;;chr3:147124307..147124336,-!p2@ZIC4!1.17!13.80!ZIC4;;chr5:92919100..92919135,+!p3@NR2F1!1.15!15.79!NR2F1;;chr11:31832862..31832884,-!p2@PAX6!1.12!12.10!PAX6;;chr2:45169143..45169167,+!p5@SIX3!1.12!12.10!SIX3;;chr13:45010939..45011033,-!p1@TSC22D1!1.10!768.57!TSC22D1;;chr5:92918956..92918969,+!p4@NR2F1!1.10!12.57!NR2F1;;chr16:86600426..86600441,+!p1@FOXC2!1.07!26.66!FOXC2;;chr13:100623375..100623425,-!p1@ZIC5!1.07!10.87!ZIC5;;chr2:63277978..63277995,+!p2@OTX1!1.07!10.87!OTX1;;chr2:45169233..45169244,+!p10@SIX3!1.07!10.78!SIX3;;chr2:5832508..5832524,+!p1@SOX11!1.07!10.68!SOX11;;chr14:29236269..29236285,+!p3@FOXG1!1.06!10.59!FOXG1;;chr5:124082322..124082364,-!p1@ZNF608!1.05!26.66!ZNF608;;chr5:92918768..92918783,+!p8@NR2F1!1.05!10.30!NR2F1;;chr3:181429741..181429767,+!p2@SOX2!1.05!10.12!SOX2;;chr10:64576105..64576133,-!p1@EGR2!1.04!20.70!EGR2;;chr3:169381420..169381535,-!p1@MECOM!1.03!11.53!MECOM;;chr11:31832807..31832823,-!p4@PAX6!1.03!9.83!PAX6;;chrX:136648643..136648711,+!p2@ZIC3!1.03!9.64!ZIC3;;chr2:71127699..71127744,+!p1@VAX2!1.02!19.95!VAX2;;chr3:168865144..168865160,-!p6@MECOM!1.02!9.55!MECOM;;chr11:31832581..31832601,-!p7@PAX6!1.01!9.26!PAX6;;chr3:25469724..25469773,+!p1@RARB!1.00!13.05!RARB;;chr14:60975644..60975673,+!p3@SIX6!1.00!8.89!SIX6;;chr3:71630980..71631110,-!p3@FOXP1!0.99!31.48!FOXP1;;chr10:48355030..48355090,+!p1@ZNF488!0.98!11.25!ZNF488;;chr11:31827535..31827565,-!p11@PAX6!0.98!8.51!PAX6;;chr1:23696348..23696363,-!p4@ZNF436!0.97!9.36!ZNF436;;chr5:92918894..92918912,+!p2@NR2F1!0.96!27.60!NR2F1;;chr12:24715376..24715432,-!p1@SOX5!0.96!10.30!SOX5;;chr2:45169179..45169190,+!p8@SIX3!0.96!8.22!SIX3;;chr5:92918860..92918871,+!p10@NR2F1!0.95!8.79!NR2F1;;chr9:16705069..16705086,-!p3@BNC2!0.95!7.94!BNC2;;chr8:60031619..60031676,-!p1@TOX!0.94!17.02!TOX;;chr5:92919068..92919082,+!p5@NR2F1!0.94!9.17!NR2F1;;chr3:21792682..21792720,-!p1@ZNF385D!0.94!7.75!ZNF385D;;chr14:73360799..73360817,-!p1@DPF3!0.93!27.23!DPF3;;chr3:147127489..147127503,+!p11@ZIC1!0.93!7.56!ZIC1;;chr2:66662281..66662308,+!p1@MEIS1!0.92!26.09!MEIS1;;chr1:23696308..23696339,-!p2@ZNF436!0.91!15.79!ZNF436;;chr1:164528616..164528660,+!p5@PBX1!0.91!14.94!PBX1;;chr2:166326200..166326216,+!p1@CSRNP3!0.91!10.59!CSRNP3;;chr16:86544113..86544145,+!p1@FOXF1!0.91!8.89!FOXF1;;chr2:45168856..45168867,+!p7@SIX3!0.90!7.00!SIX3;;chr13:100638100..100638115,+!p4@ZIC2!0.90!6.90!ZIC2;;chr16:79634624..79634642,-!p1@MAF!0.89!27.89!MAF;;chr5:124082279..124082319,-!p3@ZNF608!0.89!8.41!ZNF608;;chr8:60031682..60031710,-!p2@TOX!0.88!10.97!TOX;;chr2:25475120..25475176,-!p2@DNMT3A!0.87!8.79!DNMT3A;;chr1:23696448..23696453,-!p5@ZNF436!0.86!7.85!ZNF436;;chr14:21994337..21994442,-!p1@SALL2!0.85!17.68!SALL2;;chrX:84498989..84499003,+!p1@ZNF711!0.85!8.41!ZNF711;;chr8:77593474..77593612,+!p1@ZFHX4!0.84!26.75!ZFHX4;;chr12:66218573..66218596,+!p7@HMGA2!0.84!8.98!HMGA2;;chr11:31825588..31825613,-!p8@PAX6!0.84!5.96!PAX6;;chr9:4300050..4300118,-!p1@GLIS3!0.83!40.56!GLIS3;;chr12:26277817..26277863,-!p2@BHLHE41!0.83!8.04!BHLHE41;;chr1:151032922..151032951,+!p2@MLLT11!0.82!9.74!MLLT11;;chr3:21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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000710;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001768;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001801;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007625
|ffid_belonging_in_development=CL:0000133,CL:0000221
|ffid_belonging_in_development=CL:0000133,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor1.CNhs10871.11242-116D9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor1.CNhs10871.11242-116D9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor1.CNhs10871.11242-116D9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor1.CNhs10871.11242-116D9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor1.CNhs10871.11242-116D9.hg38.nobarcode.ctss.bed.gz
|id=FF:11242-116D9
|id=FF:11242-116D9
|is_a=EFO:0002091;;FF:0000040
|is_a=EFO:0002091;;FF:0000040
Line 46: Line 54:
|library_id=CNhs10871
|library_id=CNhs10871
|library_id_phase_based=2:CNhs10871
|library_id_phase_based=2:CNhs10871
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11242
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.TTAGGC.11242
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11242
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.TTAGGC.11242
|name=Ciliary Epithelial Cells, donor1
|name=Ciliary Epithelial Cells, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 53: Line 67:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10014,,,
|profile_srnaseq=SRhi10014,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 67: Line 82:
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|sample_category=primary cells
Line 90: Line 106:
|top_motifs=PAX1,9:2.78136976302;NKX2-1,4:2.5283676218;T:2.15571761417;GFI1:2.02320627188;NANOG:1.95452409631;SOX2:1.89676187943;SOX17:1.68708891171;CDC5L:1.67552234442;ZIC1..3:1.65713132596;NFY{A,B,C}:1.55080696644;STAT1,3:1.37757097505;MZF1:1.36992943763;ZNF384:1.32346889496;RBPJ:1.2832740849;VSX1,2:1.28157000687;TFDP1:1.23949196945;PAX4:1.22542251429;SOX{8,9,10}:1.16982775108;OCT4_SOX2{dimer}:1.14454880739;E2F1..5:1.1221986851;NKX2-3_NKX2-5:1.12071116558;MAZ:1.09200938051;POU5F1:1.08149292377;PBX1:1.07119441214;FOXP1:1.0627255431;NKX6-1,2:1.05771013333;ALX1:0.970010478215;EGR1..3:0.93840154289;LHX3,4:0.909257052175;GFI1B:0.877798434709;HOX{A4,D4}:0.853884447704;PATZ1:0.838723523901;GTF2A1,2:0.836656148806;NRF1:0.816861986948;TEAD1:0.814365979672;TLX1..3_NFIC{dimer}:0.805208864465;DBP:0.779109331756;PAX5:0.759349929751;EVI1:0.743226151093;SP1:0.741822365667;ZFP161:0.711047160415;ADNP_IRX_SIX_ZHX:0.695125853893;HMGA1,2:0.693678453482;EBF1:0.688463100661;ONECUT1,2:0.685323547011;NKX3-1:0.671390875158;ELK1,4_GABP{A,B1}:0.663282116444;POU3F1..4:0.604107846347;GTF2I:0.60262728483;CDX1,2,4:0.570860432972;LEF1_TCF7_TCF7L1,2:0.563065262483;ZNF143:0.557603968174;NR3C1:0.546537239201;SRF:0.517993501742;MTE{core}:0.504703990161;XCPE1{core}:0.482303500865;RFX1:0.472169277173;PRRX1,2:0.444778523975;FOXD3:0.431133525635;CRX:0.415201483152;NHLH1,2:0.410348490367;YY1:0.401674810535;KLF4:0.396874976525;FOXM1:0.393369634492;POU1F1:0.39290472363;HOXA9_MEIS1:0.385271189353;TBX4,5:0.332958767246;AHR_ARNT_ARNT2:0.327536080007;MYB:0.312129566172;MYFfamily:0.31049095671;PAX6:0.291292811701;MYBL2:0.279240223944;PRDM1:0.277112043602;TFAP4:0.259506498049;NFATC1..3:0.254477032264;EN1,2:0.246209692803;HIC1:0.245835386674;GATA4:0.234934661765;TFAP2{A,C}:0.225318064781;HNF4A_NR2F1,2:0.205060953873;NKX3-2:0.188409573847;TOPORS:0.17398055874;HMX1:0.172916331412;CUX2:0.162547096807;RFX2..5_RFXANK_RFXAP:0.160847757988;JUN:0.158556587153;TFAP2B:0.148298715276;NR6A1:0.14433623391;IKZF1:0.135551285755;HSF1,2:0.131517524964;EP300:0.131316388206;ZBTB6:0.12864749847;UFEwm:0.119066346147;MED-1{core}:0.115485613985;PAX8:0.113818160362;STAT2,4,6:0.0911521456848;TFCP2:0.0897272700516;GCM1,2:0.087007824497;HOX{A6,A7,B6,B7}:0.0859689138813;FOXA2:0.0832962769841;RREB1:0.0782113812403;RORA:0.0764003126552;TGIF1:0.0677965517798;ALX4:0.0600201922634;HOX{A5,B5}:0.0409297789582;BREu{core}:0.0206315068435;PITX1..3:0.015767969475;FOSL2:0.010547361412;FOX{I1,J2}:0.00818111552906;ZBTB16:-0.00844855156802;FOXP3:-0.0146830004985;ESRRA:-0.0161469399423;FOXN1:-0.0220608399307;RUNX1..3:-0.0308033788743;HNF1A:-0.0382783058856;GZF1:-0.0817576538031;NFE2:-0.101018914446;BACH2:-0.123571515215;IKZF2:-0.123861577654;SOX5:-0.131673065893;RXR{A,B,G}:-0.13659018164;POU6F1:-0.13763141252;ARID5B:-0.140474420954;MYOD1:-0.145133962452;MEF2{A,B,C,D}:-0.154426081328;HBP1_HMGB_SSRP1_UBTF:-0.159512629158;MTF1:-0.170795080512;LMO2:-0.176969780465;TAL1_TCF{3,4,12}:-0.179353960646;DMAP1_NCOR{1,2}_SMARC:-0.180389967277;FOS_FOS{B,L1}_JUN{B,D}:-0.184176679617;NFIX:-0.188360660999;ELF1,2,4:-0.190110099904;ATF2:-0.191725915751;ATF4:-0.194734906026;REST:-0.212266470841;BPTF:-0.229968083028;PDX1:-0.240634610332;AIRE:-0.241958388375;SMAD1..7,9:-0.252393507582;POU2F1..3:-0.274169653379;CREB1:-0.275873125309;IRF1,2:-0.285242273366;NFKB1_REL_RELA:-0.292981499047;NR1H4:-0.308581490901;NFE2L2:-0.311001506972;ZNF148:-0.320757056325;FOX{D1,D2}:-0.32319470886;FOXO1,3,4:-0.327025089464;TEF:-0.333920190883;TBP:-0.360561247213;TLX2:-0.367559000043;XBP1:-0.368154463129;IRF7:-0.368628497063;FOXQ1:-0.376194703546;TP53:-0.398113958165;STAT5{A,B}:-0.398703484251;SNAI1..3:-0.399230228111;SPZ1:-0.402897149213;NANOG{mouse}:-0.440093449012;NFIL3:-0.445540400104;SREBF1,2:-0.460790591032;SPIB:-0.472441747868;GLI1..3:-0.489031051445;PAX2:-0.500633671929;ZNF423:-0.514283358857;ZEB1:-0.517055071299;NR5A1,2:-0.541512706696;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.572465349772;NFE2L1:-0.57250175729;FOXL1:-0.594965381928;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.598988019594;SPI1:-0.601074568187;ESR1:-0.610468760778;ATF5_CREB3:-0.613779262844;HIF1A:-0.647758731805;HLF:-0.66591540198;CEBPA,B_DDIT3:-0.679587330544;ETS1,2:-0.680647633492;ATF6:-0.681323040759;ZNF238:-0.69722130801;GATA6:-0.697334622802;PAX3,7:-0.716080496764;NKX2-2,8:-0.756514574995;bHLH_family:-0.784888750156;AR:-0.79979464608;MAFB:-0.971394050242;HAND1,2:-1.00396990598;RXRA_VDR{dimer}:-1.00580548666;FOX{F1,F2,J1}:-1.07045073696;PPARG:-1.38096331253;HES1:-2.04379054622
|top_motifs=PAX1,9:2.78136976302;NKX2-1,4:2.5283676218;T:2.15571761417;GFI1:2.02320627188;NANOG:1.95452409631;SOX2:1.89676187943;SOX17:1.68708891171;CDC5L:1.67552234442;ZIC1..3:1.65713132596;NFY{A,B,C}:1.55080696644;STAT1,3:1.37757097505;MZF1:1.36992943763;ZNF384:1.32346889496;RBPJ:1.2832740849;VSX1,2:1.28157000687;TFDP1:1.23949196945;PAX4:1.22542251429;SOX{8,9,10}:1.16982775108;OCT4_SOX2{dimer}:1.14454880739;E2F1..5:1.1221986851;NKX2-3_NKX2-5:1.12071116558;MAZ:1.09200938051;POU5F1:1.08149292377;PBX1:1.07119441214;FOXP1:1.0627255431;NKX6-1,2:1.05771013333;ALX1:0.970010478215;EGR1..3:0.93840154289;LHX3,4:0.909257052175;GFI1B:0.877798434709;HOX{A4,D4}:0.853884447704;PATZ1:0.838723523901;GTF2A1,2:0.836656148806;NRF1:0.816861986948;TEAD1:0.814365979672;TLX1..3_NFIC{dimer}:0.805208864465;DBP:0.779109331756;PAX5:0.759349929751;EVI1:0.743226151093;SP1:0.741822365667;ZFP161:0.711047160415;ADNP_IRX_SIX_ZHX:0.695125853893;HMGA1,2:0.693678453482;EBF1:0.688463100661;ONECUT1,2:0.685323547011;NKX3-1:0.671390875158;ELK1,4_GABP{A,B1}:0.663282116444;POU3F1..4:0.604107846347;GTF2I:0.60262728483;CDX1,2,4:0.570860432972;LEF1_TCF7_TCF7L1,2:0.563065262483;ZNF143:0.557603968174;NR3C1:0.546537239201;SRF:0.517993501742;MTE{core}:0.504703990161;XCPE1{core}:0.482303500865;RFX1:0.472169277173;PRRX1,2:0.444778523975;FOXD3:0.431133525635;CRX:0.415201483152;NHLH1,2:0.410348490367;YY1:0.401674810535;KLF4:0.396874976525;FOXM1:0.393369634492;POU1F1:0.39290472363;HOXA9_MEIS1:0.385271189353;TBX4,5:0.332958767246;AHR_ARNT_ARNT2:0.327536080007;MYB:0.312129566172;MYFfamily:0.31049095671;PAX6:0.291292811701;MYBL2:0.279240223944;PRDM1:0.277112043602;TFAP4:0.259506498049;NFATC1..3:0.254477032264;EN1,2:0.246209692803;HIC1:0.245835386674;GATA4:0.234934661765;TFAP2{A,C}:0.225318064781;HNF4A_NR2F1,2:0.205060953873;NKX3-2:0.188409573847;TOPORS:0.17398055874;HMX1:0.172916331412;CUX2:0.162547096807;RFX2..5_RFXANK_RFXAP:0.160847757988;JUN:0.158556587153;TFAP2B:0.148298715276;NR6A1:0.14433623391;IKZF1:0.135551285755;HSF1,2:0.131517524964;EP300:0.131316388206;ZBTB6:0.12864749847;UFEwm:0.119066346147;MED-1{core}:0.115485613985;PAX8:0.113818160362;STAT2,4,6:0.0911521456848;TFCP2:0.0897272700516;GCM1,2:0.087007824497;HOX{A6,A7,B6,B7}:0.0859689138813;FOXA2:0.0832962769841;RREB1:0.0782113812403;RORA:0.0764003126552;TGIF1:0.0677965517798;ALX4:0.0600201922634;HOX{A5,B5}:0.0409297789582;BREu{core}:0.0206315068435;PITX1..3:0.015767969475;FOSL2:0.010547361412;FOX{I1,J2}:0.00818111552906;ZBTB16:-0.00844855156802;FOXP3:-0.0146830004985;ESRRA:-0.0161469399423;FOXN1:-0.0220608399307;RUNX1..3:-0.0308033788743;HNF1A:-0.0382783058856;GZF1:-0.0817576538031;NFE2:-0.101018914446;BACH2:-0.123571515215;IKZF2:-0.123861577654;SOX5:-0.131673065893;RXR{A,B,G}:-0.13659018164;POU6F1:-0.13763141252;ARID5B:-0.140474420954;MYOD1:-0.145133962452;MEF2{A,B,C,D}:-0.154426081328;HBP1_HMGB_SSRP1_UBTF:-0.159512629158;MTF1:-0.170795080512;LMO2:-0.176969780465;TAL1_TCF{3,4,12}:-0.179353960646;DMAP1_NCOR{1,2}_SMARC:-0.180389967277;FOS_FOS{B,L1}_JUN{B,D}:-0.184176679617;NFIX:-0.188360660999;ELF1,2,4:-0.190110099904;ATF2:-0.191725915751;ATF4:-0.194734906026;REST:-0.212266470841;BPTF:-0.229968083028;PDX1:-0.240634610332;AIRE:-0.241958388375;SMAD1..7,9:-0.252393507582;POU2F1..3:-0.274169653379;CREB1:-0.275873125309;IRF1,2:-0.285242273366;NFKB1_REL_RELA:-0.292981499047;NR1H4:-0.308581490901;NFE2L2:-0.311001506972;ZNF148:-0.320757056325;FOX{D1,D2}:-0.32319470886;FOXO1,3,4:-0.327025089464;TEF:-0.333920190883;TBP:-0.360561247213;TLX2:-0.367559000043;XBP1:-0.368154463129;IRF7:-0.368628497063;FOXQ1:-0.376194703546;TP53:-0.398113958165;STAT5{A,B}:-0.398703484251;SNAI1..3:-0.399230228111;SPZ1:-0.402897149213;NANOG{mouse}:-0.440093449012;NFIL3:-0.445540400104;SREBF1,2:-0.460790591032;SPIB:-0.472441747868;GLI1..3:-0.489031051445;PAX2:-0.500633671929;ZNF423:-0.514283358857;ZEB1:-0.517055071299;NR5A1,2:-0.541512706696;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.572465349772;NFE2L1:-0.57250175729;FOXL1:-0.594965381928;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.598988019594;SPI1:-0.601074568187;ESR1:-0.610468760778;ATF5_CREB3:-0.613779262844;HIF1A:-0.647758731805;HLF:-0.66591540198;CEBPA,B_DDIT3:-0.679587330544;ETS1,2:-0.680647633492;ATF6:-0.681323040759;ZNF238:-0.69722130801;GATA6:-0.697334622802;PAX3,7:-0.716080496764;NKX2-2,8:-0.756514574995;bHLH_family:-0.784888750156;AR:-0.79979464608;MAFB:-0.971394050242;HAND1,2:-1.00396990598;RXRA_VDR{dimer}:-1.00580548666;FOX{F1,F2,J1}:-1.07045073696;PPARG:-1.38096331253;HES1:-2.04379054622
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11242-116D9;search_select_hide=table117:FF:11242-116D9
}}
}}

Latest revision as of 16:27, 3 June 2020

Name:Ciliary Epithelial Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10871
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueeye
dev stagefetus
sexunknown
agefetal
cell typeciliated epithelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number579
catalog numberSC6585
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005104
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10871 CAGE DRX008206 DRR009078
Accession ID Hg19

Library idBAMCTSS
CNhs10871 DRZ000503 DRZ001888
Accession ID Hg38

Library idBAMCTSS
CNhs10871 DRZ011853 DRZ013238
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005104
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10014.TTAGGC sRNA-Seq DRX037227 DRR041593
Accession ID Hg19

Library idBAMCTSS
SRhi10014.TTAGGC DRZ007235


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0901
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.434
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0392
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0252
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0199
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0392
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.034
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.166
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0392
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0392
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0341
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.00329
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.257
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0392
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0619
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.318
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.182
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0752
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.383
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.168
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.108
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0922
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10871

Jaspar motifP-value
MA0002.20.00674
MA0003.10.0526
MA0004.10.159
MA0006.10.798
MA0007.10.276
MA0009.10.281
MA0014.10.493
MA0017.10.0163
MA0018.20.969
MA0019.10.857
MA0024.10.00137
MA0025.10.867
MA0027.10.353
MA0028.10.176
MA0029.10.224
MA0030.10.276
MA0031.10.0647
MA0035.20.0276
MA0038.14.7716e-5
MA0039.20.701
MA0040.10.904
MA0041.10.372
MA0042.10.295
MA0043.10.738
MA0046.10.812
MA0047.21.01099e-4
MA0048.10.458
MA0050.10.102
MA0051.10.499
MA0052.10.0928
MA0055.10.879
MA0057.10.306
MA0058.10.108
MA0059.10.0345
MA0060.13.03004e-11
MA0061.10.0156
MA0062.20.964
MA0065.20.00122
MA0066.10.074
MA0067.10.296
MA0068.11.29565e-4
MA0069.10.793
MA0070.10.106
MA0071.10.136
MA0072.10.989
MA0073.10.716
MA0074.10.195
MA0076.10.161
MA0077.10.0538
MA0078.10.949
MA0079.20.665
MA0080.24.21146e-12
MA0081.10.171
MA0083.10.0958
MA0084.10.689
MA0087.10.829
MA0088.10.13
MA0090.10.0791
MA0091.10.046
MA0092.10.209
MA0093.10.198
MA0099.24.97764e-4
MA0100.10.516
MA0101.10.241
MA0102.20.0692
MA0103.10.034
MA0104.20.0924
MA0105.14.62124e-4
MA0106.10.106
MA0107.10.0734
MA0108.20.286
MA0111.10.665
MA0112.22.47948e-6
MA0113.10.0462
MA0114.10.11
MA0115.10.203
MA0116.13.12088e-4
MA0117.10.518
MA0119.10.283
MA0122.10.703
MA0124.10.338
MA0125.10.0103
MA0131.10.646
MA0135.10.198
MA0136.12.17106e-10
MA0137.20.464
MA0138.20.0485
MA0139.10.375
MA0140.10.0391
MA0141.10.0248
MA0142.10.0934
MA0143.10.0741
MA0144.10.446
MA0145.10.468
MA0146.10.0842
MA0147.10.076
MA0148.10.00204
MA0149.10.0296
MA0150.17.1032e-4
MA0152.10.0948
MA0153.10.625
MA0154.10.00307
MA0155.10.336
MA0156.10.00154
MA0157.10.126
MA0159.10.0205
MA0160.10.0268
MA0162.10.157
MA0163.15.72723e-7
MA0164.10.47
MA0258.13.89613e-4
MA0259.10.395



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10871

Novel motifP-value
10.0707
100.127
1000.901
1010.552
1020.507
1030.174
1040.672
1050.934
1060.00927
1070.623
1080.331
1090.0749
110.0454
1100.379
1110.00319
1120.018
1130.375
1140.0212
1150.614
1160.723
1170.167
1180.243
1190.126
120.555
1200.58
1210.995
1220.845
1230.0537
1240.625
1250.231
1260.242
1270.0657
1280.111
1290.233
130.456
1300.0423
1310.601
1320.744
1330.562
1340.936
1350.0292
1360.643
1370.29
1380.101
1390.00799
140.872
1400.108
1410.127
1420.756
1430.0194
1440.894
1450.802
1460.821
1470.918
1480.0136
1490.0819
150.0869
1500.381
1510.214
1520.0438
1530.237
1540.897
1550.0113
1560.343
1570.258
1580.075
1590.546
160.213
1600.0798
1610.594
1620.567
1630.659
1640.0847
1650.648
1660.197
1670.336
1680.654
1690.00463
170.0645
180.0329
190.244
20.467
200.937
210.42
220.243
230.107
240.75
250.434
260.179
270.316
280.941
290.13
30.113
300.853
310.435
320.166
330.48
340.532
350.279
360.0386
370.089
380.165
390.839
40.653
400.085
410.0847
420.335
430.1
440.16
450.552
460.0505
470.176
480.189
490.0637
50.148
500.766
510.404
520.525
530.657
540.345
550.605
560.506
570.434
580.181
590.076
60.865
600.0751
610.217
620.0675
630.137
640.181
650.0721
660.467
670.319
680.881
690.247
70.397
700.00528
710.116
720.282
730.0456
740.487
750.0349
760.166
770.136
780.546
790.0552
80.16
800.74
810.32
820.0246
830.576
840.173
850.0121
860.121
870.513
880.786
890.0779
90.424
900.497
910.55
920.0994
930.0382
940.0475
950.0472
960.12
970.97
980.0793
990.579



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10871


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000064 (ciliated cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000067 (ciliated epithelial cell)
0005012 (multi-ciliated epithelial cell)
0002304 (non-pigmented ciliary epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000020 (sense organ)
0010371 (ecto-epithelium)
0002203 (vasculature of eye)
0001768 (uvea)
0000488 (atypical epithelium)
0007625 (pigment epithelium of eye)
0001032 (sensory system)
0002049 (vasculature)
0002200 (vasculature of head)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001778 (ciliary epithelium)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0004535 (cardiovascular system)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0001775 (ciliary body)
0010230 (eyeball of camera-type eye)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000040 (human ciliary epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

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