FF:11242-116D9: Difference between revisions

Latest revision as of 16:27, 3 June 2020

Name:	Ciliary Epithelial Cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs10871
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	eye
dev stage	fetus
sex	unknown
age	fetal
cell type	ciliated epithelial cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	579
catalog number	SC6585
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005104

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10871		CAGE		DRX008206		DRR009078

Accession ID Hg19

Library id		BAM		CTSS
CNhs10871		DRZ000503		DRZ001888

Accession ID Hg38

Library id		BAM		CTSS
CNhs10871		DRZ011853		DRZ013238

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005104

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10014.TTAGGC		sRNA-Seq		DRX037227		DRR041593

Accession ID Hg19

Library id		BAM		CTSS
SRhi10014.TTAGGC		DRZ007235

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0901
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.434
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0392
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0252
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0199
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0392
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.034
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.166
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0392
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0392
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0341
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.00329
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.257
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0392
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0619
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.318
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.182
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0752
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.383
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.168
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.108
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0922
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10871

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00674
MA0003.1	MA0003.1	0.0526
MA0004.1	MA0004.1	0.159
MA0006.1	MA0006.1	0.798
MA0007.1	MA0007.1	0.276
MA0009.1	MA0009.1	0.281
MA0014.1	MA0014.1	0.493
MA0017.1	MA0017.1	0.0163
MA0018.2	MA0018.2	0.969
MA0019.1	MA0019.1	0.857
MA0024.1	MA0024.1	0.00137
MA0025.1	MA0025.1	0.867
MA0027.1	MA0027.1	0.353
MA0028.1	MA0028.1	0.176
MA0029.1	MA0029.1	0.224
MA0030.1	MA0030.1	0.276
MA0031.1	MA0031.1	0.0647
MA0035.2	MA0035.2	0.0276
MA0038.1	MA0038.1	4.7716e-5
MA0039.2	MA0039.2	0.701
MA0040.1	MA0040.1	0.904
MA0041.1	MA0041.1	0.372
MA0042.1	MA0042.1	0.295
MA0043.1	MA0043.1	0.738
MA0046.1	MA0046.1	0.812
MA0047.2	MA0047.2	1.01099e-4
MA0048.1	MA0048.1	0.458
MA0050.1	MA0050.1	0.102
MA0051.1	MA0051.1	0.499
MA0052.1	MA0052.1	0.0928
MA0055.1	MA0055.1	0.879
MA0057.1	MA0057.1	0.306
MA0058.1	MA0058.1	0.108
MA0059.1	MA0059.1	0.0345
MA0060.1	MA0060.1	3.03004e-11
MA0061.1	MA0061.1	0.0156
MA0062.2	MA0062.2	0.964
MA0065.2	MA0065.2	0.00122
MA0066.1	MA0066.1	0.074
MA0067.1	MA0067.1	0.296
MA0068.1	MA0068.1	1.29565e-4
MA0069.1	MA0069.1	0.793
MA0070.1	MA0070.1	0.106
MA0071.1	MA0071.1	0.136
MA0072.1	MA0072.1	0.989
MA0073.1	MA0073.1	0.716
MA0074.1	MA0074.1	0.195
MA0076.1	MA0076.1	0.161
MA0077.1	MA0077.1	0.0538
MA0078.1	MA0078.1	0.949
MA0079.2	MA0079.2	0.665
MA0080.2	MA0080.2	4.21146e-12
MA0081.1	MA0081.1	0.171
MA0083.1	MA0083.1	0.0958
MA0084.1	MA0084.1	0.689
MA0087.1	MA0087.1	0.829
MA0088.1	MA0088.1	0.13
MA0090.1	MA0090.1	0.0791
MA0091.1	MA0091.1	0.046
MA0092.1	MA0092.1	0.209
MA0093.1	MA0093.1	0.198
MA0099.2	MA0099.2	4.97764e-4
MA0100.1	MA0100.1	0.516
MA0101.1	MA0101.1	0.241
MA0102.2	MA0102.2	0.0692
MA0103.1	MA0103.1	0.034
MA0104.2	MA0104.2	0.0924
MA0105.1	MA0105.1	4.62124e-4
MA0106.1	MA0106.1	0.106
MA0107.1	MA0107.1	0.0734
MA0108.2	MA0108.2	0.286
MA0111.1	MA0111.1	0.665
MA0112.2	MA0112.2	2.47948e-6
MA0113.1	MA0113.1	0.0462
MA0114.1	MA0114.1	0.11
MA0115.1	MA0115.1	0.203
MA0116.1	MA0116.1	3.12088e-4
MA0117.1	MA0117.1	0.518
MA0119.1	MA0119.1	0.283
MA0122.1	MA0122.1	0.703
MA0124.1	MA0124.1	0.338
MA0125.1	MA0125.1	0.0103
MA0131.1	MA0131.1	0.646
MA0135.1	MA0135.1	0.198
MA0136.1	MA0136.1	2.17106e-10
MA0137.2	MA0137.2	0.464
MA0138.2	MA0138.2	0.0485
MA0139.1	MA0139.1	0.375
MA0140.1	MA0140.1	0.0391
MA0141.1	MA0141.1	0.0248
MA0142.1	MA0142.1	0.0934
MA0143.1	MA0143.1	0.0741
MA0144.1	MA0144.1	0.446
MA0145.1	MA0145.1	0.468
MA0146.1	MA0146.1	0.0842
MA0147.1	MA0147.1	0.076
MA0148.1	MA0148.1	0.00204
MA0149.1	MA0149.1	0.0296
MA0150.1	MA0150.1	7.1032e-4
MA0152.1	MA0152.1	0.0948
MA0153.1	MA0153.1	0.625
MA0154.1	MA0154.1	0.00307
MA0155.1	MA0155.1	0.336
MA0156.1	MA0156.1	0.00154
MA0157.1	MA0157.1	0.126
MA0159.1	MA0159.1	0.0205
MA0160.1	MA0160.1	0.0268
MA0162.1	MA0162.1	0.157
MA0163.1	MA0163.1	5.72723e-7
MA0164.1	MA0164.1	0.47
MA0258.1	MA0258.1	3.89613e-4
MA0259.1	MA0259.1	0.395

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10871

Novel motif	Logo	P-value
1	1	0.0707
10	10	0.127
100	100	0.901
101	101	0.552
102	102	0.507
103	103	0.174
104	104	0.672
105	105	0.934
106	106	0.00927
107	107	0.623
108	108	0.331
109	109	0.0749
11	11	0.0454
110	110	0.379
111	111	0.00319
112	112	0.018
113	113	0.375
114	114	0.0212
115	115	0.614
116	116	0.723
117	117	0.167
118	118	0.243
119	119	0.126
12	12	0.555
120	120	0.58
121	121	0.995
122	122	0.845
123	123	0.0537
124	124	0.625
125	125	0.231
126	126	0.242
127	127	0.0657
128	128	0.111
129	129	0.233
13	13	0.456
130	130	0.0423
131	131	0.601
132	132	0.744
133	133	0.562
134	134	0.936
135	135	0.0292
136	136	0.643
137	137	0.29
138	138	0.101
139	139	0.00799
14	14	0.872
140	140	0.108
141	141	0.127
142	142	0.756
143	143	0.0194
144	144	0.894
145	145	0.802
146	146	0.821
147	147	0.918
148	148	0.0136
149	149	0.0819
15	15	0.0869
150	150	0.381
151	151	0.214
152	152	0.0438
153	153	0.237
154	154	0.897
155	155	0.0113
156	156	0.343
157	157	0.258
158	158	0.075
159	159	0.546
16	16	0.213
160	160	0.0798
161	161	0.594
162	162	0.567
163	163	0.659
164	164	0.0847
165	165	0.648
166	166	0.197
167	167	0.336
168	168	0.654
169	169	0.00463
17	17	0.0645
18	18	0.0329
19	19	0.244
2	2	0.467
20	20	0.937
21	21	0.42
22	22	0.243
23	23	0.107
24	24	0.75
25	25	0.434
26	26	0.179
27	27	0.316
28	28	0.941
29	29	0.13
3	3	0.113
30	30	0.853
31	31	0.435
32	32	0.166
33	33	0.48
34	34	0.532
35	35	0.279
36	36	0.0386
37	37	0.089
38	38	0.165
39	39	0.839
4	4	0.653
40	40	0.085
41	41	0.0847
42	42	0.335
43	43	0.1
44	44	0.16
45	45	0.552
46	46	0.0505
47	47	0.176
48	48	0.189
49	49	0.0637
5	5	0.148
50	50	0.766
51	51	0.404
52	52	0.525
53	53	0.657
54	54	0.345
55	55	0.605
56	56	0.506
57	57	0.434
58	58	0.181
59	59	0.076
6	6	0.865
60	60	0.0751
61	61	0.217
62	62	0.0675
63	63	0.137
64	64	0.181
65	65	0.0721
66	66	0.467
67	67	0.319
68	68	0.881
69	69	0.247
7	7	0.397
70	70	0.00528
71	71	0.116
72	72	0.282
73	73	0.0456
74	74	0.487
75	75	0.0349
76	76	0.166
77	77	0.136
78	78	0.546
79	79	0.0552
8	8	0.16
80	80	0.74
81	81	0.32
82	82	0.0246
83	83	0.576
84	84	0.173
85	85	0.0121
86	86	0.121
87	87	0.513
88	88	0.786
89	89	0.0779
9	9	0.424
90	90	0.497
91	91	0.55
92	92	0.0994
93	93	0.0382
94	94	0.0475
95	95	0.0472
96	96	0.12
97	97	0.97
98	98	0.0793
99	99	0.579

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10871

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000040 human ciliary epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000064 (ciliated cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000067 (ciliated epithelial cell)
0005012 (multi-ciliated epithelial cell)
0002304 (non-pigmented ciliary epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000020 (sense organ)
0010371 (ecto-epithelium)
0002203 (vasculature of eye)
0001768 (uvea)
0000488 (atypical epithelium)
0007625 (pigment epithelium of eye)
0001032 (sensory system)
0002049 (vasculature)
0002200 (vasculature of head)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001778 (ciliary epithelium)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0004535 (cardiovascular system)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0001775 (ciliary body)
0010230 (eyeball of camera-type eye)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000040 (human ciliary epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005104
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005104
+|accession_numbers=CAGE;DRX008206;DRR009078;DRZ000503;DRZ001888;DRZ011853;DRZ013238
+|accession_numbers_RNASeq=sRNA-Seq;DRX037227;DRR041593;DRZ007235
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000020,UBERON:0010371,UBERON:0002203,UBERON:0001768,UBERON:0000488,UBERON:0007625,UBERON:0001032,UBERON:0002049,UBERON:0002200,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001778,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0004535,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0001775,UBERON:0010230,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000064,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000067,CL:0005012,CL:0002304
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000710;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001768;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001801;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007625
 |ffid_belonging_in_development=CL:0000133,CL:0000221
 |fonse_cell_line=
@@ Line 38: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor1.CNhs10871.11242-116D9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor1.CNhs10871.11242-116D9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor1.CNhs10871.11242-116D9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor1.CNhs10871.11242-116D9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor1.CNhs10871.11242-116D9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11242-116D9
 |is_a=EFO:0002091;;FF:0000040
 |is_obsolete=
+|library_id=CNhs10871
+|library_id_phase_based=2:CNhs10871
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11242
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.TTAGGC.11242
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11242
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.TTAGGC.11242
 |name=Ciliary Epithelial Cells, donor1
 |namespace=FANTOM5
@@ Line 46: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10871,LSID703,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10014,,,
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 |rna_box=116
@@ Line 61: / Line 82: @@
 |rna_tube_id=116D9
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10014.TTAGGC
 |sample_age=fetal
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 83: / Line 106: @@
 |top_motifs=PAX1,9:2.78136976302;NKX2-1,4:2.5283676218;T:2.15571761417;GFI1:2.02320627188;NANOG:1.95452409631;SOX2:1.89676187943;SOX17:1.68708891171;CDC5L:1.67552234442;ZIC1..3:1.65713132596;NFY{A,B,C}:1.55080696644;STAT1,3:1.37757097505;MZF1:1.36992943763;ZNF384:1.32346889496;RBPJ:1.2832740849;VSX1,2:1.28157000687;TFDP1:1.23949196945;PAX4:1.22542251429;SOX{8,9,10}:1.16982775108;OCT4_SOX2{dimer}:1.14454880739;E2F1..5:1.1221986851;NKX2-3_NKX2-5:1.12071116558;MAZ:1.09200938051;POU5F1:1.08149292377;PBX1:1.07119441214;FOXP1:1.0627255431;NKX6-1,2:1.05771013333;ALX1:0.970010478215;EGR1..3:0.93840154289;LHX3,4:0.909257052175;GFI1B:0.877798434709;HOX{A4,D4}:0.853884447704;PATZ1:0.838723523901;GTF2A1,2:0.836656148806;NRF1:0.816861986948;TEAD1:0.814365979672;TLX1..3_NFIC{dimer}:0.805208864465;DBP:0.779109331756;PAX5:0.759349929751;EVI1:0.743226151093;SP1:0.741822365667;ZFP161:0.711047160415;ADNP_IRX_SIX_ZHX:0.695125853893;HMGA1,2:0.693678453482;EBF1:0.688463100661;ONECUT1,2:0.685323547011;NKX3-1:0.671390875158;ELK1,4_GABP{A,B1}:0.663282116444;POU3F1..4:0.604107846347;GTF2I:0.60262728483;CDX1,2,4:0.570860432972;LEF1_TCF7_TCF7L1,2:0.563065262483;ZNF143:0.557603968174;NR3C1:0.546537239201;SRF:0.517993501742;MTE{core}:0.504703990161;XCPE1{core}:0.482303500865;RFX1:0.472169277173;PRRX1,2:0.444778523975;FOXD3:0.431133525635;CRX:0.415201483152;NHLH1,2:0.410348490367;YY1:0.401674810535;KLF4:0.396874976525;FOXM1:0.393369634492;POU1F1:0.39290472363;HOXA9_MEIS1:0.385271189353;TBX4,5:0.332958767246;AHR_ARNT_ARNT2:0.327536080007;MYB:0.312129566172;MYFfamily:0.31049095671;PAX6:0.291292811701;MYBL2:0.279240223944;PRDM1:0.277112043602;TFAP4:0.259506498049;NFATC1..3:0.254477032264;EN1,2:0.246209692803;HIC1:0.245835386674;GATA4:0.234934661765;TFAP2{A,C}:0.225318064781;HNF4A_NR2F1,2:0.205060953873;NKX3-2:0.188409573847;TOPORS:0.17398055874;HMX1:0.172916331412;CUX2:0.162547096807;RFX2..5_RFXANK_RFXAP:0.160847757988;JUN:0.158556587153;TFAP2B:0.148298715276;NR6A1:0.14433623391;IKZF1:0.135551285755;HSF1,2:0.131517524964;EP300:0.131316388206;ZBTB6:0.12864749847;UFEwm:0.119066346147;MED-1{core}:0.115485613985;PAX8:0.113818160362;STAT2,4,6:0.0911521456848;TFCP2:0.0897272700516;GCM1,2:0.087007824497;HOX{A6,A7,B6,B7}:0.0859689138813;FOXA2:0.0832962769841;RREB1:0.0782113812403;RORA:0.0764003126552;TGIF1:0.0677965517798;ALX4:0.0600201922634;HOX{A5,B5}:0.0409297789582;BREu{core}:0.0206315068435;PITX1..3:0.015767969475;FOSL2:0.010547361412;FOX{I1,J2}:0.00818111552906;ZBTB16:-0.00844855156802;FOXP3:-0.0146830004985;ESRRA:-0.0161469399423;FOXN1:-0.0220608399307;RUNX1..3:-0.0308033788743;HNF1A:-0.0382783058856;GZF1:-0.0817576538031;NFE2:-0.101018914446;BACH2:-0.123571515215;IKZF2:-0.123861577654;SOX5:-0.131673065893;RXR{A,B,G}:-0.13659018164;POU6F1:-0.13763141252;ARID5B:-0.140474420954;MYOD1:-0.145133962452;MEF2{A,B,C,D}:-0.154426081328;HBP1_HMGB_SSRP1_UBTF:-0.159512629158;MTF1:-0.170795080512;LMO2:-0.176969780465;TAL1_TCF{3,4,12}:-0.179353960646;DMAP1_NCOR{1,2}_SMARC:-0.180389967277;FOS_FOS{B,L1}_JUN{B,D}:-0.184176679617;NFIX:-0.188360660999;ELF1,2,4:-0.190110099904;ATF2:-0.191725915751;ATF4:-0.194734906026;REST:-0.212266470841;BPTF:-0.229968083028;PDX1:-0.240634610332;AIRE:-0.241958388375;SMAD1..7,9:-0.252393507582;POU2F1..3:-0.274169653379;CREB1:-0.275873125309;IRF1,2:-0.285242273366;NFKB1_REL_RELA:-0.292981499047;NR1H4:-0.308581490901;NFE2L2:-0.311001506972;ZNF148:-0.320757056325;FOX{D1,D2}:-0.32319470886;FOXO1,3,4:-0.327025089464;TEF:-0.333920190883;TBP:-0.360561247213;TLX2:-0.367559000043;XBP1:-0.368154463129;IRF7:-0.368628497063;FOXQ1:-0.376194703546;TP53:-0.398113958165;STAT5{A,B}:-0.398703484251;SNAI1..3:-0.399230228111;SPZ1:-0.402897149213;NANOG{mouse}:-0.440093449012;NFIL3:-0.445540400104;SREBF1,2:-0.460790591032;SPIB:-0.472441747868;GLI1..3:-0.489031051445;PAX2:-0.500633671929;ZNF423:-0.514283358857;ZEB1:-0.517055071299;NR5A1,2:-0.541512706696;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.572465349772;NFE2L1:-0.57250175729;FOXL1:-0.594965381928;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.598988019594;SPI1:-0.601074568187;ESR1:-0.610468760778;ATF5_CREB3:-0.613779262844;HIF1A:-0.647758731805;HLF:-0.66591540198;CEBPA,B_DDIT3:-0.679587330544;ETS1,2:-0.680647633492;ATF6:-0.681323040759;ZNF238:-0.69722130801;GATA6:-0.697334622802;PAX3,7:-0.716080496764;NKX2-2,8:-0.756514574995;bHLH_family:-0.784888750156;AR:-0.79979464608;MAFB:-0.971394050242;HAND1,2:-1.00396990598;RXRA_VDR{dimer}:-1.00580548666;FOX{F1,F2,J1}:-1.07045073696;PPARG:-1.38096331253;HES1:-2.04379054622
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11242-116D9;search_select_hide=table117:FF:11242-116D9
 }}

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FF:11242-116D9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 16:27, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0