FF:11234-116D1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005722 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005722 | ||
|accession_numbers=CAGE;DRX008475;DRR009347;DRZ000772;DRZ002157;DRZ012122;DRZ013507 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037177;DRR041543;DRZ007185 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005284,UBERON:0002049,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001017,UBERON:0001016,UBERON:0004535,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002590 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000170 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor1.CNhs10863.11234-116D1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor1.CNhs10863.11234-116D1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor1.CNhs10863.11234-116D1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor1.CNhs10863.11234-116D1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor1.CNhs10863.11234-116D1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11234-116D1 | |id=FF:11234-116D1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000170 | ||
|is_obsolete= | |||
|library_id=CNhs10863 | |||
|library_id_phase_based=2:CNhs10863 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11234 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.GTAGAG.11234 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11234 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.GTAGAG.11234 | |||
|name=Smooth Muscle Cells - Brain Vascular, donor1 | |name=Smooth Muscle Cells - Brain Vascular, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10863,LSID702,release008,COMPLETED | |profile_hcage=CNhs10863,LSID702,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10011,,, | |profile_srnaseq=SRhi10011,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.165295135004529,0,-0.10349346138691,-0.161590886394449,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0883023380165568,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0856089850292973,0,0,0,0,0,0,0,0,0.0444870983370182,0,0,0,0.137404238899705,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.140777616352854,0,0,0,-0.236486072907255,0.0170457269974708,0,0.241625348364984,0,0,0.143589997127278,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0931411997098837,0,0,0,0,0.0208049976453814,0,0,0,0,0,0 | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=SC1105 | |rna_catalog_number=SC1105 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116D1 | |rna_tube_id=116D1 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10011.GTAGAG | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.66158392338646e-234!GO:0005737;cytoplasm;1.02826333926329e-208!GO:0043226;organelle;1.77470868329419e-181!GO:0043229;intracellular organelle;3.213273709836e-181!GO:0043231;intracellular membrane-bound organelle;2.70257113179316e-177!GO:0043227;membrane-bound organelle;6.39016349460089e-177!GO:0044444;cytoplasmic part;1.18550878886729e-153!GO:0044422;organelle part;5.26900921548818e-148!GO:0044446;intracellular organelle part;1.57529279035681e-146!GO:0032991;macromolecular complex;4.09458317036906e-101!GO:0030529;ribonucleoprotein complex;4.31775069817172e-85!GO:0044237;cellular metabolic process;2.35826748143271e-77!GO:0044238;primary metabolic process;2.69310532035156e-77!GO:0005739;mitochondrion;5.18999953686943e-75!GO:0005515;protein binding;3.8396230164784e-72!GO:0043233;organelle lumen;4.6386010200184e-71!GO:0031974;membrane-enclosed lumen;4.6386010200184e-71!GO:0044428;nuclear part;3.27242081294054e-66!GO:0003723;RNA binding;5.28111301767513e-66!GO:0043170;macromolecule metabolic process;1.05601952943543e-65!GO:0005634;nucleus;7.74904069175774e-58!GO:0031090;organelle membrane;1.65875533074781e-57!GO:0005840;ribosome;1.11250923473989e-53!GO:0043234;protein complex;1.0261489114078e-51!GO:0044429;mitochondrial part;5.6454692450435e-50!GO:0019538;protein metabolic process;4.39514787050359e-49!GO:0016043;cellular component organization and biogenesis;8.56544035100217e-49!GO:0006412;translation;7.55358875572064e-48!GO:0003735;structural constituent of ribosome;2.21454649102202e-47!GO:0009058;biosynthetic process;3.19856921555291e-47!GO:0033036;macromolecule localization;6.80031345060911e-47!GO:0015031;protein transport;1.32406632010603e-46!GO:0031967;organelle envelope;1.11259307254835e-44!GO:0006396;RNA processing;1.27034821494529e-44!GO:0044260;cellular macromolecule metabolic process;1.84029315776939e-44!GO:0031975;envelope;1.94973752102719e-44!GO:0045184;establishment of protein localization;4.7432615336592e-44!GO:0008104;protein localization;9.20631989592484e-44!GO:0044267;cellular protein metabolic process;9.9120901768016e-44!GO:0044249;cellular biosynthetic process;9.25694232914841e-42!GO:0033279;ribosomal subunit;1.40604952948092e-40!GO:0009059;macromolecule biosynthetic process;1.13546237578773e-39!GO:0031981;nuclear lumen;3.98346685457807e-39!GO:0005829;cytosol;5.54917683958323e-39!GO:0046907;intracellular transport;1.36753881373818e-37!GO:0016071;mRNA metabolic process;1.16370867842287e-35!GO:0043228;non-membrane-bound organelle;2.39766570358701e-33!GO:0043232;intracellular non-membrane-bound organelle;2.39766570358701e-33!GO:0008380;RNA splicing;3.7918721069721e-33!GO:0006996;organelle organization and biogenesis;4.11386657907014e-33!GO:0005740;mitochondrial envelope;3.40763971399549e-32!GO:0006397;mRNA processing;2.91000875860926e-31!GO:0043283;biopolymer metabolic process;3.62573807658227e-31!GO:0031966;mitochondrial membrane;1.78391026966033e-30!GO:0006886;intracellular protein transport;2.91499712205657e-30!GO:0019866;organelle inner membrane;8.93031410331956e-30!GO:0065003;macromolecular complex assembly;2.28667933121341e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.0160537226349e-29!GO:0005743;mitochondrial inner membrane;4.79902202655085e-28!GO:0010467;gene expression;1.56259906081027e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.64378958121632e-27!GO:0022607;cellular component assembly;8.10349669349347e-27!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.1345674609652e-25!GO:0051649;establishment of cellular localization;2.30807435137313e-25!GO:0051641;cellular localization;3.00738472156726e-25!GO:0012505;endomembrane system;1.20453705387123e-24!GO:0005654;nucleoplasm;2.86181124635427e-24!GO:0006119;oxidative phosphorylation;3.75940337341497e-24!GO:0044445;cytosolic part;2.13193289319027e-23!GO:0005681;spliceosome;4.98307336738626e-23!GO:0005783;endoplasmic reticulum;2.7358084949737e-22!GO:0000166;nucleotide binding;1.05141424279814e-21!GO:0044455;mitochondrial membrane part;1.17322340647873e-21!GO:0031980;mitochondrial lumen;1.39048429802499e-21!GO:0005759;mitochondrial matrix;1.39048429802499e-21!GO:0006259;DNA metabolic process;2.7395739931916e-21!GO:0016462;pyrophosphatase activity;3.52215933756534e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.59361181258151e-21!GO:0015934;large ribosomal subunit;5.7801330962209e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;7.14696023441698e-21!GO:0007049;cell cycle;1.09416324437932e-20!GO:0015935;small ribosomal subunit;1.10987371286463e-20!GO:0006457;protein folding;1.1536215493582e-20!GO:0017111;nucleoside-triphosphatase activity;3.59159661369443e-20!GO:0048770;pigment granule;6.05904709256705e-20!GO:0042470;melanosome;6.05904709256705e-20!GO:0044451;nucleoplasm part;2.59773093460413e-19!GO:0044432;endoplasmic reticulum part;6.71376688329048e-19!GO:0005746;mitochondrial respiratory chain;8.38890808550832e-19!GO:0051186;cofactor metabolic process;5.020388553826e-18!GO:0016874;ligase activity;5.22263382328754e-18!GO:0005794;Golgi apparatus;1.11153712383432e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.40504039916525e-17!GO:0000502;proteasome complex (sensu Eukaryota);5.48158089582592e-17!GO:0022618;protein-RNA complex assembly;6.73315751387447e-17!GO:0006512;ubiquitin cycle;2.36682450520704e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.82276162814853e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.21572836628213e-16!GO:0003954;NADH dehydrogenase activity;3.21572836628213e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.21572836628213e-16!GO:0019941;modification-dependent protein catabolic process;5.93714996856992e-16!GO:0043632;modification-dependent macromolecule catabolic process;5.93714996856992e-16!GO:0044265;cellular macromolecule catabolic process;5.94728797741707e-16!GO:0005761;mitochondrial ribosome;6.65313347743059e-16!GO:0000313;organellar ribosome;6.65313347743059e-16!GO:0044257;cellular protein catabolic process;7.22485799195201e-16!GO:0032553;ribonucleotide binding;7.99651789795904e-16!GO:0032555;purine ribonucleotide binding;7.99651789795904e-16!GO:0017076;purine nucleotide binding;1.09911254308655e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.24275321971264e-15!GO:0022402;cell cycle process;1.29020260539626e-15!GO:0048193;Golgi vesicle transport;1.36192273863885e-15!GO:0005730;nucleolus;1.617729831019e-15!GO:0000278;mitotic cell cycle;1.62602342107365e-15!GO:0043285;biopolymer catabolic process;2.31337058216894e-15!GO:0044248;cellular catabolic process;4.56826061453892e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.8694004829991e-15!GO:0006605;protein targeting;1.0520672144454e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.19881421631334e-14!GO:0008134;transcription factor binding;1.2951525694396e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.47486970474544e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.54722163974188e-14!GO:0042773;ATP synthesis coupled electron transport;1.54722163974188e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.99131131395302e-14!GO:0045271;respiratory chain complex I;1.99131131395302e-14!GO:0005747;mitochondrial respiratory chain complex I;1.99131131395302e-14!GO:0009057;macromolecule catabolic process;2.82565744966734e-14!GO:0030163;protein catabolic process;3.24792672964435e-14!GO:0006732;coenzyme metabolic process;3.24792672964435e-14!GO:0016192;vesicle-mediated transport;3.77684531826678e-14!GO:0003676;nucleic acid binding;4.92132641266027e-14!GO:0008135;translation factor activity, nucleic acid binding;6.27758818054465e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.29939375784654e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.52720448372608e-14!GO:0051082;unfolded protein binding;7.39422232186385e-14!GO:0005635;nuclear envelope;1.68156941688134e-13!GO:0005789;endoplasmic reticulum membrane;1.85065305838865e-13!GO:0006974;response to DNA damage stimulus;2.13778703836628e-13!GO:0005524;ATP binding;1.1334953380751e-12!GO:0032559;adenyl ribonucleotide binding;1.70258432620849e-12!GO:0031965;nuclear membrane;1.99588715797536e-12!GO:0030554;adenyl nucleotide binding;3.14658069438767e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;3.41249103754263e-12!GO:0000375;RNA splicing, via transesterification reactions;3.41249103754263e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.41249103754263e-12!GO:0005793;ER-Golgi intermediate compartment;4.5659699356507e-12!GO:0009259;ribonucleotide metabolic process;4.96402089696819e-12!GO:0043412;biopolymer modification;5.09002669812778e-12!GO:0009055;electron carrier activity;7.16933334383919e-12!GO:0006163;purine nucleotide metabolic process;9.44805486026319e-12!GO:0009150;purine ribonucleotide metabolic process;1.89252955736633e-11!GO:0051301;cell division;3.83415253323954e-11!GO:0000087;M phase of mitotic cell cycle;4.52114297754766e-11!GO:0042254;ribosome biogenesis and assembly;5.02783249346542e-11!GO:0003743;translation initiation factor activity;5.71078843668083e-11!GO:0007067;mitosis;7.17628038654199e-11!GO:0006464;protein modification process;8.80692018013134e-11!GO:0022403;cell cycle phase;1.00048817584533e-10!GO:0006164;purine nucleotide biosynthetic process;1.05077547059523e-10!GO:0016604;nuclear body;1.07603343686262e-10!GO:0006413;translational initiation;1.26881395696138e-10!GO:0006281;DNA repair;1.70642197272816e-10!GO:0044453;nuclear membrane part;1.70642197272816e-10!GO:0009152;purine ribonucleotide biosynthetic process;2.01775495422558e-10!GO:0005694;chromosome;2.14307298465724e-10!GO:0009260;ribonucleotide biosynthetic process;2.26757534767411e-10!GO:0009199;ribonucleoside triphosphate metabolic process;2.36207525993446e-10!GO:0009141;nucleoside triphosphate metabolic process;2.69529841373737e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.70400984375535e-10!GO:0042623;ATPase activity, coupled;3.87777419919978e-10!GO:0016887;ATPase activity;3.9920042022269e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.06372583803538e-10!GO:0009144;purine nucleoside triphosphate metabolic process;4.06372583803538e-10!GO:0009060;aerobic respiration;4.85251246378786e-10!GO:0051276;chromosome organization and biogenesis;5.02035960871473e-10!GO:0006446;regulation of translational initiation;5.515742477026e-10!GO:0008639;small protein conjugating enzyme activity;6.44033857238418e-10!GO:0009719;response to endogenous stimulus;6.79424905967624e-10!GO:0045333;cellular respiration;8.36481531896677e-10!GO:0004842;ubiquitin-protein ligase activity;9.24809370553105e-10!GO:0012501;programmed cell death;9.56090029588754e-10!GO:0019787;small conjugating protein ligase activity;9.8271357105487e-10!GO:0051726;regulation of cell cycle;1.14908580166388e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.48759823444609e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.5757240206085e-09!GO:0000074;regulation of progression through cell cycle;1.64478638987496e-09!GO:0006913;nucleocytoplasmic transport;1.64785979700894e-09!GO:0044427;chromosomal part;1.82585328975211e-09!GO:0006915;apoptosis;2.35734088218413e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.53836186486385e-09!GO:0009056;catabolic process;2.62896195286571e-09!GO:0008565;protein transporter activity;3.59754767542358e-09!GO:0051169;nuclear transport;4.11175763405101e-09!GO:0006399;tRNA metabolic process;4.58688311597974e-09!GO:0009142;nucleoside triphosphate biosynthetic process;4.58688311597974e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.58688311597974e-09!GO:0006888;ER to Golgi vesicle-mediated transport;5.26988827881656e-09!GO:0046034;ATP metabolic process;6.24838678750679e-09!GO:0043687;post-translational protein modification;6.39673882062944e-09!GO:0015986;ATP synthesis coupled proton transport;6.52333022420857e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.52333022420857e-09!GO:0051188;cofactor biosynthetic process;6.54759836622845e-09!GO:0005768;endosome;7.35750958962018e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.79290491944535e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.79290491944535e-09!GO:0003712;transcription cofactor activity;8.43791880622239e-09!GO:0008219;cell death;8.93028265134788e-09!GO:0016265;death;8.93028265134788e-09!GO:0016070;RNA metabolic process;9.23794224167714e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;9.54478412899142e-09!GO:0004386;helicase activity;9.88230901819315e-09!GO:0016607;nuclear speck;1.06271249593835e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.1527750362879e-08!GO:0065002;intracellular protein transport across a membrane;2.09238580830232e-08!GO:0003924;GTPase activity;2.09238580830232e-08!GO:0006099;tricarboxylic acid cycle;2.09238580830232e-08!GO:0046356;acetyl-CoA catabolic process;2.09238580830232e-08!GO:0005643;nuclear pore;2.42695039295254e-08!GO:0006461;protein complex assembly;2.78595881648113e-08!GO:0000279;M phase;2.88801087485792e-08!GO:0006323;DNA packaging;2.90871193555625e-08!GO:0016881;acid-amino acid ligase activity;2.9371098572611e-08!GO:0065004;protein-DNA complex assembly;3.28968597538796e-08!GO:0009117;nucleotide metabolic process;4.20917387730522e-08!GO:0051187;cofactor catabolic process;5.44812175438876e-08!GO:0017038;protein import;5.63459681730933e-08!GO:0019829;cation-transporting ATPase activity;5.9928221964589e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.15673109820365e-08!GO:0004812;aminoacyl-tRNA ligase activity;6.15673109820365e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.15673109820365e-08!GO:0030120;vesicle coat;6.28741954486032e-08!GO:0030662;coated vesicle membrane;6.28741954486032e-08!GO:0006084;acetyl-CoA metabolic process;6.37399269311595e-08!GO:0006260;DNA replication;6.49029566128992e-08!GO:0009109;coenzyme catabolic process;7.87098415917754e-08!GO:0016469;proton-transporting two-sector ATPase complex;8.19535523925167e-08!GO:0043038;amino acid activation;8.28510084365462e-08!GO:0006418;tRNA aminoacylation for protein translation;8.28510084365462e-08!GO:0043039;tRNA aminoacylation;8.28510084365462e-08!GO:0046930;pore complex;8.66086789303903e-08!GO:0016491;oxidoreductase activity;1.07073137262083e-07!GO:0006754;ATP biosynthetic process;1.07073137262083e-07!GO:0006753;nucleoside phosphate metabolic process;1.07073137262083e-07!GO:0005788;endoplasmic reticulum lumen;1.07945506642488e-07!GO:0008026;ATP-dependent helicase activity;1.43110687547989e-07!GO:0048475;coated membrane;1.45651446781527e-07!GO:0030117;membrane coat;1.45651446781527e-07!GO:0007005;mitochondrion organization and biogenesis;1.58327896029504e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.73705952187015e-07!GO:0015630;microtubule cytoskeleton;1.78902543695442e-07!GO:0044431;Golgi apparatus part;1.85136929855275e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.18180315894432e-07!GO:0016853;isomerase activity;2.70917890837727e-07!GO:0006364;rRNA processing;2.74668564104333e-07!GO:0051246;regulation of protein metabolic process;3.58139697877503e-07!GO:0009108;coenzyme biosynthetic process;3.58139697877503e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.05742113092156e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.8278671991453e-07!GO:0050657;nucleic acid transport;4.86143949030726e-07!GO:0051236;establishment of RNA localization;4.86143949030726e-07!GO:0050658;RNA transport;4.86143949030726e-07!GO:0016023;cytoplasmic membrane-bound vesicle;4.91532986281383e-07!GO:0006403;RNA localization;5.04653833897411e-07!GO:0031988;membrane-bound vesicle;5.0986593551644e-07!GO:0016787;hydrolase activity;5.59702015662096e-07!GO:0016072;rRNA metabolic process;6.28255453470647e-07!GO:0048523;negative regulation of cellular process;6.61155048647899e-07!GO:0006091;generation of precursor metabolites and energy;9.22589113708153e-07!GO:0004298;threonine endopeptidase activity;1.11741613123537e-06!GO:0006333;chromatin assembly or disassembly;1.11741613123537e-06!GO:0045259;proton-transporting ATP synthase complex;1.32239218526115e-06!GO:0044440;endosomal part;1.39622521969082e-06!GO:0010008;endosome membrane;1.39622521969082e-06!GO:0031982;vesicle;1.71523391772186e-06!GO:0031410;cytoplasmic vesicle;1.84010460559637e-06!GO:0006752;group transfer coenzyme metabolic process;1.8418447692226e-06!GO:0016740;transferase activity;1.94616579287825e-06!GO:0005770;late endosome;2.01718384096329e-06!GO:0031252;leading edge;2.08067755779069e-06!GO:0043566;structure-specific DNA binding;2.55171506723876e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.24948712644437e-06!GO:0008654;phospholipid biosynthetic process;3.50712552084123e-06!GO:0000785;chromatin;3.60947925483099e-06!GO:0015980;energy derivation by oxidation of organic compounds;3.68226760662999e-06!GO:0016859;cis-trans isomerase activity;3.83416011031655e-06!GO:0006334;nucleosome assembly;4.2254826504068e-06!GO:0005813;centrosome;4.34362231359372e-06!GO:0032446;protein modification by small protein conjugation;4.37087219762723e-06!GO:0006613;cotranslational protein targeting to membrane;4.4630006576637e-06!GO:0016126;sterol biosynthetic process;5.5247709168369e-06!GO:0003697;single-stranded DNA binding;5.55483459740805e-06!GO:0000151;ubiquitin ligase complex;5.63460274200627e-06!GO:0007010;cytoskeleton organization and biogenesis;5.64634971280575e-06!GO:0005773;vacuole;5.6792224921313e-06!GO:0005762;mitochondrial large ribosomal subunit;5.78382058168421e-06!GO:0000315;organellar large ribosomal subunit;5.78382058168421e-06!GO:0006366;transcription from RNA polymerase II promoter;6.33885400835098e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.86681291975217e-06!GO:0005525;GTP binding;6.93201742759448e-06!GO:0016779;nucleotidyltransferase activity;7.32843859049725e-06!GO:0005798;Golgi-associated vesicle;7.83208865511272e-06!GO:0051170;nuclear import;8.62411239738012e-06!GO:0016567;protein ubiquitination;9.07102271698531e-06!GO:0000245;spliceosome assembly;9.46304469858834e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.88338125780916e-06!GO:0000139;Golgi membrane;1.0924126623382e-05!GO:0045786;negative regulation of progression through cell cycle;1.15456850468699e-05!GO:0031497;chromatin assembly;1.26429732663465e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.29730750830115e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.37752920691482e-05!GO:0042981;regulation of apoptosis;1.53352105248156e-05!GO:0051028;mRNA transport;1.56811861167657e-05!GO:0043067;regulation of programmed cell death;1.59807129087302e-05!GO:0051329;interphase of mitotic cell cycle;1.59807129087302e-05!GO:0005769;early endosome;1.64238727075243e-05!GO:0005815;microtubule organizing center;1.71984230671923e-05!GO:0051427;hormone receptor binding;1.79929544402989e-05!GO:0048519;negative regulation of biological process;1.81568561351189e-05!GO:0006606;protein import into nucleus;1.87358894186825e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.31577367459354e-05!GO:0008610;lipid biosynthetic process;2.44625447749561e-05!GO:0032561;guanyl ribonucleotide binding;2.73923277072713e-05!GO:0019001;guanyl nucleotide binding;2.73923277072713e-05!GO:0043069;negative regulation of programmed cell death;2.82122074935432e-05!GO:0030029;actin filament-based process;2.83706173921764e-05!GO:0000314;organellar small ribosomal subunit;3.55212062761346e-05!GO:0005763;mitochondrial small ribosomal subunit;3.55212062761346e-05!GO:0035257;nuclear hormone receptor binding;3.80993862331048e-05!GO:0031968;organelle outer membrane;3.85303600721797e-05!GO:0019867;outer membrane;4.37003447614364e-05!GO:0005667;transcription factor complex;4.56170905905234e-05!GO:0043623;cellular protein complex assembly;4.62259328415267e-05!GO:0019899;enzyme binding;4.67146698172029e-05!GO:0006916;anti-apoptosis;4.67146698172029e-05!GO:0043066;negative regulation of apoptosis;4.69961802173148e-05!GO:0030867;rough endoplasmic reticulum membrane;4.69961802173148e-05!GO:0005791;rough endoplasmic reticulum;4.81161997604388e-05!GO:0003724;RNA helicase activity;4.82764813932375e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.18798831015096e-05!GO:0006793;phosphorus metabolic process;5.78984716975047e-05!GO:0006796;phosphate metabolic process;5.78984716975047e-05!GO:0003713;transcription coactivator activity;5.84518122946507e-05!GO:0043021;ribonucleoprotein binding;6.22512594000165e-05!GO:0016568;chromatin modification;6.23624229712954e-05!GO:0000323;lytic vacuole;6.53343396307545e-05!GO:0005764;lysosome;6.53343396307545e-05!GO:0008092;cytoskeletal protein binding;6.56942647241099e-05!GO:0051325;interphase;6.97555244732329e-05!GO:0045454;cell redox homeostasis;7.18605080260591e-05!GO:0006695;cholesterol biosynthetic process;7.71986532746661e-05!GO:0006612;protein targeting to membrane;8.72800331657016e-05!GO:0009165;nucleotide biosynthetic process;8.83522189979306e-05!GO:0016310;phosphorylation;9.03538977590894e-05!GO:0005819;spindle;9.84381580795228e-05!GO:0030133;transport vesicle;0.000129601514234546!GO:0005741;mitochondrial outer membrane;0.000155677108659264!GO:0046474;glycerophospholipid biosynthetic process;0.000160513766074591!GO:0005905;coated pit;0.000185938600660424!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000211999557038391!GO:0033116;ER-Golgi intermediate compartment membrane;0.000235987349015078!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000249001117979336!GO:0050794;regulation of cellular process;0.000262833144531814!GO:0005048;signal sequence binding;0.000271321027144459!GO:0008361;regulation of cell size;0.000288900852126474!GO:0008250;oligosaccharyl transferase complex;0.000308013239955702!GO:0051789;response to protein stimulus;0.000313755609083742!GO:0006986;response to unfolded protein;0.000313755609083742!GO:0005885;Arp2/3 protein complex;0.000318649549433497!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000319864396723674!GO:0007051;spindle organization and biogenesis;0.000323817181448124!GO:0004576;oligosaccharyl transferase activity;0.000347179959479912!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000368732861787871!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000391004507995073!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000396572505966324!GO:0016049;cell growth;0.000408520361055632!GO:0003714;transcription corepressor activity;0.000428546374498809!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000428578325854529!GO:0003899;DNA-directed RNA polymerase activity;0.00049758437136012!GO:0044262;cellular carbohydrate metabolic process;0.000582689316267346!GO:0030663;COPI coated vesicle membrane;0.000588689409397391!GO:0030126;COPI vesicle coat;0.000588689409397391!GO:0043681;protein import into mitochondrion;0.000600593066209763!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000610631200775879!GO:0046467;membrane lipid biosynthetic process;0.000731252620130942!GO:0051920;peroxiredoxin activity;0.000755998130623773!GO:0008186;RNA-dependent ATPase activity;0.000858510821060321!GO:0065009;regulation of a molecular function;0.000958715380314543!GO:0016564;transcription repressor activity;0.00097351775024201!GO:0006839;mitochondrial transport;0.000995430721085827!GO:0046489;phosphoinositide biosynthetic process;0.00101420470426776!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00101420470426776!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00101420470426776!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00101420470426776!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00102311933729818!GO:0048471;perinuclear region of cytoplasm;0.00102607593056567!GO:0018196;peptidyl-asparagine modification;0.00102720561786374!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00102720561786374!GO:0006891;intra-Golgi vesicle-mediated transport;0.00107404491451223!GO:0030132;clathrin coat of coated pit;0.00109353452604921!GO:0031072;heat shock protein binding;0.00112740655573191!GO:0000075;cell cycle checkpoint;0.00117402991247716!GO:0006626;protein targeting to mitochondrion;0.00121428542763847!GO:0031324;negative regulation of cellular metabolic process;0.00124041046404638!GO:0001558;regulation of cell growth;0.00124373975268105!GO:0016044;membrane organization and biogenesis;0.00130050939664425!GO:0015992;proton transport;0.00130591202234292!GO:0007243;protein kinase cascade;0.00133031841763968!GO:0019843;rRNA binding;0.0013524903130128!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00135971774302907!GO:0015399;primary active transmembrane transporter activity;0.00135971774302907!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00136456782129757!GO:0016197;endosome transport;0.00138793378841813!GO:0016563;transcription activator activity;0.00146903601441954!GO:0000775;chromosome, pericentric region;0.00147351204221678!GO:0030137;COPI-coated vesicle;0.00152314204907027!GO:0006818;hydrogen transport;0.00152525851720488!GO:0006082;organic acid metabolic process;0.00162791469100455!GO:0022890;inorganic cation transmembrane transporter activity;0.00164127657449987!GO:0048500;signal recognition particle;0.00165136060593454!GO:0019752;carboxylic acid metabolic process;0.00165618774374943!GO:0007006;mitochondrial membrane organization and biogenesis;0.00193182239359216!GO:0006383;transcription from RNA polymerase III promoter;0.00199714508798346!GO:0000059;protein import into nucleus, docking;0.00219099734887059!GO:0016363;nuclear matrix;0.00220271643816521!GO:0045045;secretory pathway;0.00220455564537967!GO:0004004;ATP-dependent RNA helicase activity;0.00227617342740644!GO:0003729;mRNA binding;0.00231326796810992!GO:0007050;cell cycle arrest;0.00235266118853199!GO:0016125;sterol metabolic process;0.00235877921443312!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0023627830346396!GO:0015002;heme-copper terminal oxidase activity;0.0023627830346396!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0023627830346396!GO:0004129;cytochrome-c oxidase activity;0.0023627830346396!GO:0003690;double-stranded DNA binding;0.0024042894643791!GO:0006261;DNA-dependent DNA replication;0.00244235286267959!GO:0001726;ruffle;0.00258517357486914!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00265582311039023!GO:0051168;nuclear export;0.0026934746859634!GO:0035258;steroid hormone receptor binding;0.00273957192423176!GO:0050662;coenzyme binding;0.00278005401145459!GO:0016408;C-acyltransferase activity;0.00279552660938788!GO:0031902;late endosome membrane;0.00281217111062796!GO:0051287;NAD binding;0.00287447288181671!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00293081639692897!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00293081639692897!GO:0030880;RNA polymerase complex;0.00293081639692897!GO:0050789;regulation of biological process;0.00294686791986946!GO:0030027;lamellipodium;0.00304746921239132!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00306786094828996!GO:0045047;protein targeting to ER;0.00306786094828996!GO:0030659;cytoplasmic vesicle membrane;0.00306786094828996!GO:0007264;small GTPase mediated signal transduction;0.00306786094828996!GO:0030176;integral to endoplasmic reticulum membrane;0.003194290884518!GO:0009892;negative regulation of metabolic process;0.00320357105691224!GO:0006650;glycerophospholipid metabolic process;0.00321985577629344!GO:0030134;ER to Golgi transport vesicle;0.00322982416754843!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00326638228301876!GO:0051128;regulation of cellular component organization and biogenesis;0.00333891006864275!GO:0030658;transport vesicle membrane;0.00341458672374659!GO:0015631;tubulin binding;0.00360063553415623!GO:0008312;7S RNA binding;0.00392623513098166!GO:0030118;clathrin coat;0.00407296761080253!GO:0000786;nucleosome;0.0042189675415864!GO:0051098;regulation of binding;0.00422103587163402!GO:0008180;signalosome;0.00437378654727639!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00439156184556639!GO:0030521;androgen receptor signaling pathway;0.00470086752948927!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00474906201189573!GO:0016860;intramolecular oxidoreductase activity;0.00479344719110164!GO:0006302;double-strand break repair;0.00484949959209026!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00503404835554399!GO:0042802;identical protein binding;0.00505784454122167!GO:0000776;kinetochore;0.00511837599596785!GO:0005684;U2-dependent spliceosome;0.00524609308705433!GO:0006979;response to oxidative stress;0.00527796870658051!GO:0008047;enzyme activator activity;0.00527937849992153!GO:0051087;chaperone binding;0.00549215525172857!GO:0051101;regulation of DNA binding;0.00549230545969421!GO:0006414;translational elongation;0.00555056219194145!GO:0042158;lipoprotein biosynthetic process;0.0056085173115464!GO:0008139;nuclear localization sequence binding;0.00564699286936577!GO:0051252;regulation of RNA metabolic process;0.00572639363151084!GO:0005657;replication fork;0.00572639363151084!GO:0030127;COPII vesicle coat;0.00587731924289388!GO:0012507;ER to Golgi transport vesicle membrane;0.00587731924289388!GO:0007040;lysosome organization and biogenesis;0.00592702426801631!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00594230459557579!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00605568396066912!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00606909638942516!GO:0000428;DNA-directed RNA polymerase complex;0.00606909638942516!GO:0008033;tRNA processing;0.00608578575650699!GO:0044452;nucleolar part;0.00617980647561805!GO:0048487;beta-tubulin binding;0.00639486219534986!GO:0051539;4 iron, 4 sulfur cluster binding;0.00639596318912519!GO:0043488;regulation of mRNA stability;0.00648670229135596!GO:0043487;regulation of RNA stability;0.00648670229135596!GO:0006892;post-Golgi vesicle-mediated transport;0.0066928760439334!GO:0005869;dynactin complex;0.00677063765209675!GO:0006509;membrane protein ectodomain proteolysis;0.0070547093843072!GO:0033619;membrane protein proteolysis;0.0070547093843072!GO:0051540;metal cluster binding;0.00711735288110885!GO:0051536;iron-sulfur cluster binding;0.00711735288110885!GO:0006595;polyamine metabolic process;0.00743467832768851!GO:0043492;ATPase activity, coupled to movement of substances;0.00744043178964749!GO:0044433;cytoplasmic vesicle part;0.00749304130944573!GO:0003678;DNA helicase activity;0.00752924359489818!GO:0048522;positive regulation of cellular process;0.00756174609045237!GO:0031901;early endosome membrane;0.0075804231531181!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00778530255443781!GO:0005581;collagen;0.00789651077908466!GO:0007033;vacuole organization and biogenesis;0.00799487642780187!GO:0006352;transcription initiation;0.00802543206351262!GO:0006497;protein amino acid lipidation;0.00807749729357364!GO:0005874;microtubule;0.0080805628057158!GO:0030384;phosphoinositide metabolic process;0.0080805628057158!GO:0008094;DNA-dependent ATPase activity;0.00817711596841273!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0082750829256586!GO:0043284;biopolymer biosynthetic process;0.00831281196745764!GO:0031124;mRNA 3'-end processing;0.00846097232193449!GO:0007052;mitotic spindle organization and biogenesis;0.0085367997339255!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00899332655750117!GO:0046483;heterocycle metabolic process;0.00907192704146166!GO:0006402;mRNA catabolic process;0.00921068551226974!GO:0003684;damaged DNA binding;0.00921514155613449!GO:0043022;ribosome binding;0.00926172380446853!GO:0005774;vacuolar membrane;0.00926172380446853!GO:0030660;Golgi-associated vesicle membrane;0.00944341464506401!GO:0006118;electron transport;0.0103574074223179!GO:0006220;pyrimidine nucleotide metabolic process;0.0106234101384043!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0109160439672588!GO:0006643;membrane lipid metabolic process;0.0109297547487256!GO:0032940;secretion by cell;0.0111058127949624!GO:0007021;tubulin folding;0.0111058127949624!GO:0005862;muscle thin filament tropomyosin;0.0114150548002773!GO:0000082;G1/S transition of mitotic cell cycle;0.0116210706853003!GO:0016481;negative regulation of transcription;0.0116556464482127!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0118660443224194!GO:0005637;nuclear inner membrane;0.0121396664683695!GO:0000049;tRNA binding;0.0121495129178744!GO:0050681;androgen receptor binding;0.012281308950641!GO:0033673;negative regulation of kinase activity;0.0124349501708823!GO:0006469;negative regulation of protein kinase activity;0.0124349501708823!GO:0006506;GPI anchor biosynthetic process;0.0124773092329922!GO:0003746;translation elongation factor activity;0.0125005407399191!GO:0016272;prefoldin complex;0.0128548126680423!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0130242762734357!GO:0005832;chaperonin-containing T-complex;0.0130825765481153!GO:0007034;vacuolar transport;0.0134380171653575!GO:0031625;ubiquitin protein ligase binding;0.0134886614876049!GO:0012506;vesicle membrane;0.0137586598392199!GO:0004177;aminopeptidase activity;0.0139458360613714!GO:0006505;GPI anchor metabolic process;0.0140091646401858!GO:0051052;regulation of DNA metabolic process;0.0141590322215766!GO:0006740;NADPH regeneration;0.0145287838064703!GO:0006098;pentose-phosphate shunt;0.0145287838064703!GO:0007093;mitotic cell cycle checkpoint;0.0145501157346447!GO:0006778;porphyrin metabolic process;0.0146612807050144!GO:0033013;tetrapyrrole metabolic process;0.0146612807050144!GO:0016584;nucleosome positioning;0.0154995347930794!GO:0044255;cellular lipid metabolic process;0.0156359718251691!GO:0006520;amino acid metabolic process;0.0156613046004075!GO:0051348;negative regulation of transferase activity;0.015688449025846!GO:0007160;cell-matrix adhesion;0.0163871338294277!GO:0003711;transcription elongation regulator activity;0.0168201953671013!GO:0000339;RNA cap binding;0.0171045278032679!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0171045278032679!GO:0030518;steroid hormone receptor signaling pathway;0.0171469305652069!GO:0050811;GABA receptor binding;0.0171744862861081!GO:0005096;GTPase activator activity;0.0175326016982639!GO:0040008;regulation of growth;0.0175326016982639!GO:0050790;regulation of catalytic activity;0.0175624931968751!GO:0000096;sulfur amino acid metabolic process;0.0177185192482237!GO:0003779;actin binding;0.0177753599782672!GO:0006310;DNA recombination;0.0185105565287551!GO:0016251;general RNA polymerase II transcription factor activity;0.0186600285253696!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0187601303129599!GO:0048037;cofactor binding;0.0188263261729001!GO:0031589;cell-substrate adhesion;0.018843817893316!GO:0006611;protein export from nucleus;0.0200163459665079!GO:0045334;clathrin-coated endocytic vesicle;0.020148366135947!GO:0007088;regulation of mitosis;0.020148366135947!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0203206177971662!GO:0030125;clathrin vesicle coat;0.0203669251290208!GO:0030665;clathrin coated vesicle membrane;0.0203669251290208!GO:0030145;manganese ion binding;0.0207878522922138!GO:0008652;amino acid biosynthetic process;0.0209442103491878!GO:0008632;apoptotic program;0.0209862343833336!GO:0031529;ruffle organization and biogenesis;0.0210961244962309!GO:0008168;methyltransferase activity;0.0212100942903224!GO:0044437;vacuolar part;0.021246117658356!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.021671273648004!GO:0030865;cortical cytoskeleton organization and biogenesis;0.022009171609343!GO:0008154;actin polymerization and/or depolymerization;0.0220280393964724!GO:0000209;protein polyubiquitination;0.0221849996497973!GO:0035035;histone acetyltransferase binding;0.0221862568568538!GO:0017166;vinculin binding;0.0222749540269944!GO:0030041;actin filament polymerization;0.0233018374990372!GO:0030119;AP-type membrane coat adaptor complex;0.0233402409445557!GO:0016741;transferase activity, transferring one-carbon groups;0.0237523907946992!GO:0009967;positive regulation of signal transduction;0.0244161621562354!GO:0006401;RNA catabolic process;0.0244170775861035!GO:0008286;insulin receptor signaling pathway;0.0245349113497496!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0251343882673507!GO:0033043;regulation of organelle organization and biogenesis;0.0251343882673507!GO:0006644;phospholipid metabolic process;0.0254770019343425!GO:0019206;nucleoside kinase activity;0.025614281127769!GO:0008203;cholesterol metabolic process;0.0261214033069286!GO:0009112;nucleobase metabolic process;0.0271820633647722!GO:0046519;sphingoid metabolic process;0.0274038908459381!GO:0022406;membrane docking;0.0278043140181824!GO:0048278;vesicle docking;0.0278043140181824!GO:0006672;ceramide metabolic process;0.0278043140181824!GO:0032984;macromolecular complex disassembly;0.0278043140181824!GO:0006518;peptide metabolic process;0.0278982131233885!GO:0033559;unsaturated fatty acid metabolic process;0.0289545213580159!GO:0006636;unsaturated fatty acid biosynthetic process;0.0289545213580159!GO:0005765;lysosomal membrane;0.0289545213580159!GO:0019798;procollagen-proline dioxygenase activity;0.0292055406688318!GO:0006950;response to stress;0.0300888435932509!GO:0007346;regulation of progression through mitotic cell cycle;0.0307046030005745!GO:0009116;nucleoside metabolic process;0.030849000053901!GO:0030833;regulation of actin filament polymerization;0.031639198071173!GO:0004185;serine carboxypeptidase activity;0.0323152216502218!GO:0031970;organelle envelope lumen;0.0323537894782884!GO:0008234;cysteine-type peptidase activity;0.0326480428192021!GO:0006779;porphyrin biosynthetic process;0.0327096699391087!GO:0033014;tetrapyrrole biosynthetic process;0.0327096699391087!GO:0032507;maintenance of cellular protein localization;0.0327096699391087!GO:0005876;spindle microtubule;0.0327332575648617!GO:0006007;glucose catabolic process;0.0332518698089136!GO:0000287;magnesium ion binding;0.0332993222000843!GO:0006733;oxidoreduction coenzyme metabolic process;0.0334265259547157!GO:0006289;nucleotide-excision repair;0.0335133260511031!GO:0000910;cytokinesis;0.0335900060767553!GO:0006984;ER-nuclear signaling pathway;0.0335900060767553!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0335900060767553!GO:0008538;proteasome activator activity;0.0336081880454986!GO:0005583;fibrillar collagen;0.0342242089718639!GO:0004527;exonuclease activity;0.0344382868669364!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0346530836547132!GO:0004667;prostaglandin-D synthase activity;0.0346530836547132!GO:0050802;circadian sleep/wake cycle, sleep;0.0346530836547132!GO:0022410;circadian sleep/wake cycle process;0.0346530836547132!GO:0042749;regulation of circadian sleep/wake cycle;0.0346530836547132!GO:0031123;RNA 3'-end processing;0.0346530836547132!GO:0030508;thiol-disulfide exchange intermediate activity;0.034797758601758!GO:0007265;Ras protein signal transduction;0.0348495772417981!GO:0003923;GPI-anchor transamidase activity;0.0348495772417981!GO:0016255;attachment of GPI anchor to protein;0.0348495772417981!GO:0042765;GPI-anchor transamidase complex;0.0348495772417981!GO:0003756;protein disulfide isomerase activity;0.0348793590863371!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0348793590863371!GO:0006066;alcohol metabolic process;0.0353959030870183!GO:0042168;heme metabolic process;0.0355799497848356!GO:0005801;cis-Golgi network;0.0357857476500564!GO:0031543;peptidyl-proline dioxygenase activity;0.0358939052731791!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0361210094364409!GO:0008097;5S rRNA binding;0.036351093159583!GO:0004563;beta-N-acetylhexosaminidase activity;0.0364789215328515!GO:0005758;mitochondrial intermembrane space;0.0365727336024043!GO:0006378;mRNA polyadenylation;0.0366948516845013!GO:0006144;purine base metabolic process;0.0369406645196733!GO:0030128;clathrin coat of endocytic vesicle;0.0371854959104859!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0371854959104859!GO:0030122;AP-2 adaptor complex;0.0371854959104859!GO:0031418;L-ascorbic acid binding;0.0376320743816475!GO:0005784;translocon complex;0.0377060525449574!GO:0003682;chromatin binding;0.0377060525449574!GO:0008299;isoprenoid biosynthetic process;0.0378610089045401!GO:0006739;NADP metabolic process;0.0379637349130379!GO:0030131;clathrin adaptor complex;0.0382194432131897!GO:0004448;isocitrate dehydrogenase activity;0.038275356282891!GO:0006769;nicotinamide metabolic process;0.0400010419223449!GO:0031272;regulation of pseudopodium formation;0.0400010419223449!GO:0031269;pseudopodium formation;0.0400010419223449!GO:0031344;regulation of cell projection organization and biogenesis;0.0400010419223449!GO:0031268;pseudopodium organization and biogenesis;0.0400010419223449!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0400010419223449!GO:0031274;positive regulation of pseudopodium formation;0.0400010419223449!GO:0031371;ubiquitin conjugating enzyme complex;0.0400010419223449!GO:0030911;TPR domain binding;0.040487878794004!GO:0006904;vesicle docking during exocytosis;0.0405461881678635!GO:0005586;collagen type III;0.0405461881678635!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0406101464350954!GO:0050750;low-density lipoprotein receptor binding;0.0408457014838344!GO:0043130;ubiquitin binding;0.0418491627000752!GO:0032182;small conjugating protein binding;0.0418491627000752!GO:0007030;Golgi organization and biogenesis;0.0420134824277119!GO:0009081;branched chain family amino acid metabolic process;0.0420500188347808!GO:0015036;disulfide oxidoreductase activity;0.0430900322378185!GO:0007041;lysosomal transport;0.0430900322378185!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0431649890539926!GO:0010257;NADH dehydrogenase complex assembly;0.0431649890539926!GO:0033108;mitochondrial respiratory chain complex assembly;0.0431649890539926!GO:0030032;lamellipodium biogenesis;0.0439183513313396!GO:0045185;maintenance of protein localization;0.0440367159917695!GO:0032508;DNA duplex unwinding;0.0447481304935178!GO:0032392;DNA geometric change;0.0447481304935178!GO:0016453;C-acetyltransferase activity;0.0452744539174753!GO:0006767;water-soluble vitamin metabolic process;0.0453353385883222!GO:0030496;midbody;0.0455425775882703!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0455806598715143!GO:0046128;purine ribonucleoside metabolic process;0.0457353097707738!GO:0042278;purine nucleoside metabolic process;0.0457353097707738!GO:0043624;cellular protein complex disassembly;0.0463584675592573!GO:0009225;nucleotide-sugar metabolic process;0.0464342061010602!GO:0008022;protein C-terminus binding;0.0469312858148739!GO:0001952;regulation of cell-matrix adhesion;0.0470263394216201!GO:0043241;protein complex disassembly;0.0470455076876852!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0491259507049299!GO:0006338;chromatin remodeling;0.0495518527981516!GO:0032906;transforming growth factor-beta2 production;0.0496249408627618!GO:0032909;regulation of transforming growth factor-beta2 production;0.0496249408627618!GO:0030522;intracellular receptor-mediated signaling pathway;0.0497629627066801 | |||
|sample_id=11234 | |sample_id=11234 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=brain | |sample_tissue=brain | ||
|top_motifs=MYBL2:1.56551419;PAX4:1.55674412854;TAL1_TCF{3,4,12}:1.36083989227;PAX1,9:1.19960532903;HSF1,2:1.16048956019;LHX3,4:1.14206035651;HMGA1,2:1.14155985482;HBP1_HMGB_SSRP1_UBTF:1.13250897747;TFAP4:1.095773415;TEF:1.05632198388;NR3C1:0.954548116241;TEAD1:0.919181858996;GFI1:0.857254035593;GFI1B:0.853196321445;HOX{A5,B5}:0.826607857872;ZNF238:0.817621689262;EBF1:0.790051616426;ATF6:0.775533541737;IKZF1:0.755661779177;XBP1:0.755193262497;GZF1:0.748340505335;EN1,2:0.701937471452;GTF2A1,2:0.678663294362;ZNF384:0.669180393864;ZIC1..3:0.668424531748;SREBF1,2:0.655169328318;SRF:0.637739937115;RBPJ:0.618096540341;MEF2{A,B,C,D}:0.589720680665;NKX6-1,2:0.579076400219;LEF1_TCF7_TCF7L1,2:0.570352868683;NKX2-2,8:0.528713674507;MAZ:0.528393848459;CDC5L:0.52487554633;SOX17:0.522580794339;NFIX:0.521031615268;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.515341565262;POU3F1..4:0.510765581106;NFY{A,B,C}:0.510639078194;AIRE:0.488824295733;ARID5B:0.482408920229;PAX8:0.479085156558;FOXD3:0.468644203593;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.453376599264;PAX5:0.420493114252;HOXA9_MEIS1:0.415889387952;EVI1:0.415752336593;SOX5:0.399437692909;TLX1..3_NFIC{dimer}:0.397920108982;ADNP_IRX_SIX_ZHX:0.397434553153;CDX1,2,4:0.372753003258;STAT5{A,B}:0.36744903808;NFATC1..3:0.36136076563;T:0.350751686821;FOXL1:0.342852244578;TBX4,5:0.325872413277;PDX1:0.315340352116;HES1:0.310282468371;FOXP1:0.308416943791;ALX4:0.299382077661;YY1:0.294744134937;NKX3-1:0.270942722012;SP1:0.265783926421;NKX2-3_NKX2-5:0.252734432533;ZNF143:0.246010785829;ESRRA:0.221682965724;GATA4:0.207004088191;ZBTB16:0.205542330329;NRF1:0.197015684514;GTF2I:0.188058125673;NHLH1,2:0.170763469065;FOX{I1,J2}:0.170372099079;TP53:0.166555433833;TBP:0.158923030905;SOX2:0.15806662626;E2F1..5:0.153603397412;PATZ1:0.151364590981;NANOG{mouse}:0.15094342729;SPZ1:0.149400180613;NFE2L2:0.139874341409;ZNF423:0.123981094159;HNF4A_NR2F1,2:0.12360909165;UFEwm:0.118824466306;IRF7:0.118474921144;ZFP161:0.114996494508;TFCP2:0.109626070973;ELK1,4_GABP{A,B1}:0.103096333917;HIC1:0.102952364661;MYFfamily:0.0751121900491;TGIF1:0.0742504138442;STAT1,3:0.0677906680749;FOXA2:0.0629606902527;IRF1,2:0.0548508674497;HOX{A4,D4}:0.0543188620492;GCM1,2:0.04848171753;bHLH_family:0.0234694435282;KLF4:0.0180393058683;RXR{A,B,G}:0.0078944580858;OCT4_SOX2{dimer}:0.00472623760243;TFDP1:0.00326663939;MZF1:0.00274009339788;NANOG:-0.000763885252232;POU1F1:-0.0091438658119;HNF1A:-0.0255353328213;AR:-0.0293595341858;ESR1:-0.0335749025733;NR5A1,2:-0.03700014398;HAND1,2:-0.0384468834742;ELF1,2,4:-0.0393402356256;PAX3,7:-0.0472233593939;FOXO1,3,4:-0.0482099438809;RFX1:-0.0606216886271;PAX2:-0.0674066263989;HIF1A:-0.0696704361982;XCPE1{core}:-0.070855994865;STAT2,4,6:-0.0821955845596;NKX2-1,4:-0.0848161297914;HLF:-0.0867431910877;PPARG:-0.0893116416141;BACH2:-0.0929775105329;ZNF148:-0.108836958341;PAX6:-0.119092560684;FOSL2:-0.1239249669;PRRX1,2:-0.135071629068;NR1H4:-0.140843099889;ZBTB6:-0.14428523744;JUN:-0.152661317892;DBP:-0.160699201778;FOS_FOS{B,L1}_JUN{B,D}:-0.160993612394;BPTF:-0.193890732795;RUNX1..3:-0.214864191286;TFAP2B:-0.21891120139;HOX{A6,A7,B6,B7}:-0.221378381803;TFAP2{A,C}:-0.223137825223;SOX{8,9,10}:-0.233957948544;MYB:-0.252477684575;ONECUT1,2:-0.277953953431;MTE{core}:-0.280278110411;HMX1:-0.288446492706;PBX1:-0.288877598774;PRDM1:-0.307694947467;CRX:-0.312954656934;NR6A1:-0.31502315334;NFE2:-0.315862752822;ETS1,2:-0.318369251275;CUX2:-0.326795522312;FOXP3:-0.343729616943;CEBPA,B_DDIT3:-0.345373843045;ATF4:-0.362263888079;NFKB1_REL_RELA:-0.373437032064;RORA:-0.391313520533;FOXM1:-0.399081281058;MYOD1:-0.399610858566;EGR1..3:-0.411621044153;GLI1..3:-0.412675194832;POU5F1:-0.412735030618;POU6F1:-0.418507418275;DMAP1_NCOR{1,2}_SMARC:-0.418682596774;IKZF2:-0.425260621071;AHR_ARNT_ARNT2:-0.429269322905;MED-1{core}:-0.430340887268;FOXQ1:-0.430660406383;REST:-0.431629559834;MAFB:-0.433058024593;CREB1:-0.436981236493;RXRA_VDR{dimer}:-0.44100858164;NKX3-2:-0.445892026452;MTF1:-0.448370328855;RREB1:-0.461155890519;GATA6:-0.468302395485;SPIB:-0.490418983268;FOX{F1,F2,J1}:-0.509755948746;NFIL3:-0.514342686937;SNAI1..3:-0.53961057683;RFX2..5_RFXANK_RFXAP:-0.558304515409;SPI1:-0.561614668613;TOPORS:-0.568552666635;PITX1..3:-0.585860648939;ATF2:-0.58935057;LMO2:-0.657747504721;ATF5_CREB3:-0.672477318022;BREu{core}:-0.67957255527;NFE2L1:-0.685607755187;SMAD1..7,9:-0.700041873872;TLX2:-0.732946308831;FOX{D1,D2}:-0.738053460894;FOXN1:-0.743650062176;POU2F1..3:-0.750102214861;EP300:-0.906420671676;ZEB1:-0.916298921932;ALX1:-1.00260905387;VSX1,2:-1.0549569208 | |top_motifs=MYBL2:1.56551419;PAX4:1.55674412854;TAL1_TCF{3,4,12}:1.36083989227;PAX1,9:1.19960532903;HSF1,2:1.16048956019;LHX3,4:1.14206035651;HMGA1,2:1.14155985482;HBP1_HMGB_SSRP1_UBTF:1.13250897747;TFAP4:1.095773415;TEF:1.05632198388;NR3C1:0.954548116241;TEAD1:0.919181858996;GFI1:0.857254035593;GFI1B:0.853196321445;HOX{A5,B5}:0.826607857872;ZNF238:0.817621689262;EBF1:0.790051616426;ATF6:0.775533541737;IKZF1:0.755661779177;XBP1:0.755193262497;GZF1:0.748340505335;EN1,2:0.701937471452;GTF2A1,2:0.678663294362;ZNF384:0.669180393864;ZIC1..3:0.668424531748;SREBF1,2:0.655169328318;SRF:0.637739937115;RBPJ:0.618096540341;MEF2{A,B,C,D}:0.589720680665;NKX6-1,2:0.579076400219;LEF1_TCF7_TCF7L1,2:0.570352868683;NKX2-2,8:0.528713674507;MAZ:0.528393848459;CDC5L:0.52487554633;SOX17:0.522580794339;NFIX:0.521031615268;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.515341565262;POU3F1..4:0.510765581106;NFY{A,B,C}:0.510639078194;AIRE:0.488824295733;ARID5B:0.482408920229;PAX8:0.479085156558;FOXD3:0.468644203593;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.453376599264;PAX5:0.420493114252;HOXA9_MEIS1:0.415889387952;EVI1:0.415752336593;SOX5:0.399437692909;TLX1..3_NFIC{dimer}:0.397920108982;ADNP_IRX_SIX_ZHX:0.397434553153;CDX1,2,4:0.372753003258;STAT5{A,B}:0.36744903808;NFATC1..3:0.36136076563;T:0.350751686821;FOXL1:0.342852244578;TBX4,5:0.325872413277;PDX1:0.315340352116;HES1:0.310282468371;FOXP1:0.308416943791;ALX4:0.299382077661;YY1:0.294744134937;NKX3-1:0.270942722012;SP1:0.265783926421;NKX2-3_NKX2-5:0.252734432533;ZNF143:0.246010785829;ESRRA:0.221682965724;GATA4:0.207004088191;ZBTB16:0.205542330329;NRF1:0.197015684514;GTF2I:0.188058125673;NHLH1,2:0.170763469065;FOX{I1,J2}:0.170372099079;TP53:0.166555433833;TBP:0.158923030905;SOX2:0.15806662626;E2F1..5:0.153603397412;PATZ1:0.151364590981;NANOG{mouse}:0.15094342729;SPZ1:0.149400180613;NFE2L2:0.139874341409;ZNF423:0.123981094159;HNF4A_NR2F1,2:0.12360909165;UFEwm:0.118824466306;IRF7:0.118474921144;ZFP161:0.114996494508;TFCP2:0.109626070973;ELK1,4_GABP{A,B1}:0.103096333917;HIC1:0.102952364661;MYFfamily:0.0751121900491;TGIF1:0.0742504138442;STAT1,3:0.0677906680749;FOXA2:0.0629606902527;IRF1,2:0.0548508674497;HOX{A4,D4}:0.0543188620492;GCM1,2:0.04848171753;bHLH_family:0.0234694435282;KLF4:0.0180393058683;RXR{A,B,G}:0.0078944580858;OCT4_SOX2{dimer}:0.00472623760243;TFDP1:0.00326663939;MZF1:0.00274009339788;NANOG:-0.000763885252232;POU1F1:-0.0091438658119;HNF1A:-0.0255353328213;AR:-0.0293595341858;ESR1:-0.0335749025733;NR5A1,2:-0.03700014398;HAND1,2:-0.0384468834742;ELF1,2,4:-0.0393402356256;PAX3,7:-0.0472233593939;FOXO1,3,4:-0.0482099438809;RFX1:-0.0606216886271;PAX2:-0.0674066263989;HIF1A:-0.0696704361982;XCPE1{core}:-0.070855994865;STAT2,4,6:-0.0821955845596;NKX2-1,4:-0.0848161297914;HLF:-0.0867431910877;PPARG:-0.0893116416141;BACH2:-0.0929775105329;ZNF148:-0.108836958341;PAX6:-0.119092560684;FOSL2:-0.1239249669;PRRX1,2:-0.135071629068;NR1H4:-0.140843099889;ZBTB6:-0.14428523744;JUN:-0.152661317892;DBP:-0.160699201778;FOS_FOS{B,L1}_JUN{B,D}:-0.160993612394;BPTF:-0.193890732795;RUNX1..3:-0.214864191286;TFAP2B:-0.21891120139;HOX{A6,A7,B6,B7}:-0.221378381803;TFAP2{A,C}:-0.223137825223;SOX{8,9,10}:-0.233957948544;MYB:-0.252477684575;ONECUT1,2:-0.277953953431;MTE{core}:-0.280278110411;HMX1:-0.288446492706;PBX1:-0.288877598774;PRDM1:-0.307694947467;CRX:-0.312954656934;NR6A1:-0.31502315334;NFE2:-0.315862752822;ETS1,2:-0.318369251275;CUX2:-0.326795522312;FOXP3:-0.343729616943;CEBPA,B_DDIT3:-0.345373843045;ATF4:-0.362263888079;NFKB1_REL_RELA:-0.373437032064;RORA:-0.391313520533;FOXM1:-0.399081281058;MYOD1:-0.399610858566;EGR1..3:-0.411621044153;GLI1..3:-0.412675194832;POU5F1:-0.412735030618;POU6F1:-0.418507418275;DMAP1_NCOR{1,2}_SMARC:-0.418682596774;IKZF2:-0.425260621071;AHR_ARNT_ARNT2:-0.429269322905;MED-1{core}:-0.430340887268;FOXQ1:-0.430660406383;REST:-0.431629559834;MAFB:-0.433058024593;CREB1:-0.436981236493;RXRA_VDR{dimer}:-0.44100858164;NKX3-2:-0.445892026452;MTF1:-0.448370328855;RREB1:-0.461155890519;GATA6:-0.468302395485;SPIB:-0.490418983268;FOX{F1,F2,J1}:-0.509755948746;NFIL3:-0.514342686937;SNAI1..3:-0.53961057683;RFX2..5_RFXANK_RFXAP:-0.558304515409;SPI1:-0.561614668613;TOPORS:-0.568552666635;PITX1..3:-0.585860648939;ATF2:-0.58935057;LMO2:-0.657747504721;ATF5_CREB3:-0.672477318022;BREu{core}:-0.67957255527;NFE2L1:-0.685607755187;SMAD1..7,9:-0.700041873872;TLX2:-0.732946308831;FOX{D1,D2}:-0.738053460894;FOXN1:-0.743650062176;POU2F1..3:-0.750102214861;EP300:-0.906420671676;ZEB1:-0.916298921932;ALX1:-1.00260905387;VSX1,2:-1.0549569208 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11234-116D1;search_select_hide=table117:FF:11234-116D1 | |||
}} | }} | ||
Latest revision as of 16:26, 3 June 2020
| Name: | Smooth Muscle Cells - Brain Vascular, donor1 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10863 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10863
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10863
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.445 |
| 10 | 10 | 0.871 |
| 100 | 100 | 0.63 |
| 101 | 101 | 0.832 |
| 102 | 102 | 0.00608 |
| 103 | 103 | 0.871 |
| 104 | 104 | 0.917 |
| 105 | 105 | 0.881 |
| 106 | 106 | 0.0487 |
| 107 | 107 | 0.286 |
| 108 | 108 | 0.152 |
| 109 | 109 | 0.867 |
| 11 | 11 | 0.894 |
| 110 | 110 | 0.37 |
| 111 | 111 | 0.288 |
| 112 | 112 | 0.246 |
| 113 | 113 | 0.382 |
| 114 | 114 | 0.985 |
| 115 | 115 | 0.504 |
| 116 | 116 | 0.198 |
| 117 | 117 | 0.774 |
| 118 | 118 | 0.179 |
| 119 | 119 | 0.82 |
| 12 | 12 | 0.158 |
| 120 | 120 | 0.981 |
| 121 | 121 | 0.94 |
| 122 | 122 | 0.00563 |
| 123 | 123 | 9.16613e-4 |
| 124 | 124 | 0.708 |
| 125 | 125 | 0.903 |
| 126 | 126 | 0.673 |
| 127 | 127 | 0.152 |
| 128 | 128 | 0.655 |
| 129 | 129 | 0.889 |
| 13 | 13 | 0.683 |
| 130 | 130 | 0.0107 |
| 131 | 131 | 0.08 |
| 132 | 132 | 0.322 |
| 133 | 133 | 0.121 |
| 134 | 134 | 0.0471 |
| 135 | 135 | 0.185 |
| 136 | 136 | 0.672 |
| 137 | 137 | 0.0161 |
| 138 | 138 | 0.197 |
| 139 | 139 | 0.0918 |
| 14 | 14 | 0.284 |
| 140 | 140 | 0.129 |
| 141 | 141 | 0.0477 |
| 142 | 142 | 0.431 |
| 143 | 143 | 0.196 |
| 144 | 144 | 0.584 |
| 145 | 145 | 0.518 |
| 146 | 146 | 0.0536 |
| 147 | 147 | 0.324 |
| 148 | 148 | 0.154 |
| 149 | 149 | 0.585 |
| 15 | 15 | 0.241 |
| 150 | 150 | 0.554 |
| 151 | 151 | 0.457 |
| 152 | 152 | 0.748 |
| 153 | 153 | 0.748 |
| 154 | 154 | 0.164 |
| 155 | 155 | 0.0038 |
| 156 | 156 | 0.239 |
| 157 | 157 | 0.197 |
| 158 | 158 | 0.00635 |
| 159 | 159 | 0.0691 |
| 16 | 16 | 0.752 |
| 160 | 160 | 0.971 |
| 161 | 161 | 0.821 |
| 162 | 162 | 0.244 |
| 163 | 163 | 0.96 |
| 164 | 164 | 0.0326 |
| 165 | 165 | 0.548 |
| 166 | 166 | 0.111 |
| 167 | 167 | 0.992 |
| 168 | 168 | 0.37 |
| 169 | 169 | 0.318 |
| 17 | 17 | 0.992 |
| 18 | 18 | 0.691 |
| 19 | 19 | 0.0693 |
| 2 | 2 | 0.933 |
| 20 | 20 | 0.656 |
| 21 | 21 | 0.954 |
| 22 | 22 | 0.39 |
| 23 | 23 | 0.317 |
| 24 | 24 | 0.546 |
| 25 | 25 | 0.258 |
| 26 | 26 | 0.443 |
| 27 | 27 | 0.707 |
| 28 | 28 | 0.118 |
| 29 | 29 | 0.477 |
| 3 | 3 | 0.709 |
| 30 | 30 | 0.21 |
| 31 | 31 | 0.693 |
| 32 | 32 | 2.17427e-5 |
| 33 | 33 | 0.147 |
| 34 | 34 | 0.785 |
| 35 | 35 | 0.29 |
| 36 | 36 | 0.813 |
| 37 | 37 | 0.507 |
| 38 | 38 | 0.399 |
| 39 | 39 | 0.336 |
| 4 | 4 | 0.0128 |
| 40 | 40 | 0.792 |
| 41 | 41 | 0.0235 |
| 42 | 42 | 0.931 |
| 43 | 43 | 0.166 |
| 44 | 44 | 0.861 |
| 45 | 45 | 0.304 |
| 46 | 46 | 0.148 |
| 47 | 47 | 0.816 |
| 48 | 48 | 0.94 |
| 49 | 49 | 0.0399 |
| 5 | 5 | 0.729 |
| 50 | 50 | 0.619 |
| 51 | 51 | 0.477 |
| 52 | 52 | 0.858 |
| 53 | 53 | 0.056 |
| 54 | 54 | 0.91 |
| 55 | 55 | 0.787 |
| 56 | 56 | 0.909 |
| 57 | 57 | 0.772 |
| 58 | 58 | 0.0419 |
| 59 | 59 | 0.648 |
| 6 | 6 | 0.908 |
| 60 | 60 | 0.0637 |
| 61 | 61 | 0.804 |
| 62 | 62 | 0.0487 |
| 63 | 63 | 0.537 |
| 64 | 64 | 0.454 |
| 65 | 65 | 0.748 |
| 66 | 66 | 0.202 |
| 67 | 67 | 0.663 |
| 68 | 68 | 0.171 |
| 69 | 69 | 0.866 |
| 7 | 7 | 0.616 |
| 70 | 70 | 0.155 |
| 71 | 71 | 0.569 |
| 72 | 72 | 0.423 |
| 73 | 73 | 0.507 |
| 74 | 74 | 0.495 |
| 75 | 75 | 0.624 |
| 76 | 76 | 0.85 |
| 77 | 77 | 0.759 |
| 78 | 78 | 0.922 |
| 79 | 79 | 0.397 |
| 8 | 8 | 0.411 |
| 80 | 80 | 0.886 |
| 81 | 81 | 0.718 |
| 82 | 82 | 0.0463 |
| 83 | 83 | 0.412 |
| 84 | 84 | 0.969 |
| 85 | 85 | 0.821 |
| 86 | 86 | 0.483 |
| 87 | 87 | 0.336 |
| 88 | 88 | 0.691 |
| 89 | 89 | 0.602 |
| 9 | 9 | 0.994 |
| 90 | 90 | 0.726 |
| 91 | 91 | 0.969 |
| 92 | 92 | 0.151 |
| 93 | 93 | 0.818 |
| 94 | 94 | 0.423 |
| 95 | 95 | 0.889 |
| 96 | 96 | 0.212 |
| 97 | 97 | 0.306 |
| 98 | 98 | 0.737 |
| 99 | 99 | 2.94251e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10863
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000170 human smooth muscle cell of the brain vasculature sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002590 (smooth muscle cell of the brain vasculature)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0005284 (brain vasculature)
0002049 (vasculature)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001017 (central nervous system)
0001016 (nervous system)
0004535 (cardiovascular system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000170 (human smooth muscle cell of the brain vasculature sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
