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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008022
|DRA_sample_Accession=CAGE@SAMD00005343
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005343
|HumanCAGEScanFiles=NCig10041;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/CD14%2b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.NCig10041.11229-116C5.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/CD14%2b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.NCig10041.11229-116C5.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/CD14%2b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.NCig10041.11229-116C5.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/CD14%2b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.NCig10041.11229-116C5.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008129;DRR009001;DRZ000426;DRZ001811;DRZ011776;DRZ013161
|accession_numbers_RNASeq=sRNA-Seq;DRX037147;DRR041513;DRZ007155
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000763,CL:0002320,CL:0000066,CL:0002371,CL:0000213,CL:0000766,CL:0002078,CL:0000219,CL:0000215,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0000034,CL:0000576,CL:0000115,CL:0000566,CL:0002619
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000763,CL:0002320,CL:0000066,CL:0002371,CL:0000213,CL:0000766,CL:0002078,CL:0000219,CL:0000215,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0000034,CL:0000576,CL:0000115,CL:0000566,CL:0002619
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.57!368.79!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.44!272.73!PLEK;;chr16:85932760..85932775,+!p1@IRF8!2.37!235.78!IRF8;;chr7:115670804..115670825,-!p1@TFEC!2.14!137.04!TFEC;;chr20:39317868..39317884,-!p1@MAFB!1.97!1036.06!MAFB;;chr16:79634624..79634642,-!p1@MAF!1.96!334.53!MAF;;chr12:54778471..54778528,-!p1@ZNF385A!1.88!75.24!ZNF385A;;chr10:51572408..51572454,+!p3@NCOA4!1.81!352.67!NCOA4;;chr10:31288398..31288455,-!p2@ZNF438!1.70!56.87!ZNF438;;chr4:26165074..26165110,+!p9@RBPJ!1.64!42.54!RBPJ;;chr11:47400062..47400077,-!p2@SPI1!1.62!40.53!SPI1;;chr2:145277882..145277967,-!p3@ZEB2!1.61!66.73!ZEB2;;chr16:79634595..79634620,-!p2@MAF!1.55!61.80!MAF;;chr2:122042770..122042785,-!p1@TFCP2L1!1.55!34.48!TFCP2L1;;chr7:137620650..137620677,-!p3@CREB3L2!1.51!31.57!CREB3L2;;chr2:145277640..145277771,-!p1@ZEB2!1.50!392.52!ZEB2;;chr14:75988771..75988826,+!p1@BATF!1.49!39.86!BATF;;chr16:67198683..67198698,+!p2@HSF4!1.49!30.00!HSF4;;chr7:128577972..128578047,+!p1@IRF5!1.48!45.23!IRF5;;chr7:137620684..137620711,-!p4@CREB3L2!1.46!27.54!CREB3L2;;chr16:79633894..79633954,-!p3@MAF!1.42!47.69!MAF;;chr2:113999360..113999386,-!p4@PAX8!1.42!25.53!PAX8;;chr11:47279504..47279563,+!p1@NR1H3!1.41!54.41!NR1H3;;chrY:21906594..21906622,-!p1@KDM5D!1.38!22.84!KDM5D;;chr12:26277956..26277980,-!p1@BHLHE41!1.34!73.22!BHLHE41;;chr7:50343634..50343717,+!p2@IKZF1!1.33!20.60!IKZF1;;chr1:78050720..78050734,-!p9@ZZZ3!1.33!20.38!ZZZ3;;chr7:50344289..50344323,+!p1@IKZF1!1.32!19.70!IKZF1;;chr19:33793430..33793447,-!p1@CEBPA!1.31!79.71!CEBPA;;chr10:51572339..51572376,+!p4@NCOA4!1.31!42.99!NCOA4;;chr16:79634581..79634592,-!p4@MAF!1.29!18.58!MAF;;chr12:12764995..12765017,+!p3@CREBL2!1.22!21.72!CREBL2;;chr11:47399996..47400014,-!p4@SPI1!1.17!13.66!SPI1;;chr19:13213662..13213686,-!p1@LYL1!1.14!18.81!LYL1;;chr11:47399947..47399961,-!p3@SPI1!1.14!12.76!SPI1;;chr3:69788576..69788648,+!p1@MITF!1.11!63.59!MITF;;chr2:145275982..145276003,-!p7@ZEB2!1.11!11.87!ZEB2;;chr19:13213954..13214021,-!p4@LYL1!1.11!11.87!LYL1;;chr12:26277929..26277955,-!p3@BHLHE41!1.09!16.12!BHLHE41;;chr11:128563948..128564003,+!p1@FLI1!1.08!134.57!FLI1;;chr16:79634464..79634493,-!p5@MAF!1.08!10.97!MAF;;chr6:144385698..144385742,-!p2@PLAGL1!1.04!12.32!PLAGL1;;chr16:67198633..67198671,+!p1@HSF4!1.04!10.08!HSF4;;chr10:31288370..31288393,-!p3@ZNF438!1.04!9.85!ZNF438;;chr17:40440481..40440550,+!p1@STAT5A!1.03!70.09!STAT5A;;chr3:114343039..114343085,-!p8@ZBTB20!1.03!9.63!ZBTB20;;chr5:88178983..88179012,-!p1@MEF2C!1.02!73.89!MEF2C;;chr13:41593425..41593480,-!p1@ELF1!1.02!61.80!ELF1;;chr7:115670792..115670797,-!p2@TFEC!1.00!8.96!TFEC;;chr19:13213704..13213726,-!p3@LYL1!0.99!11.64!LYL1;;chr3:71179699..71179744,-!p2@FOXP1!0.97!64.04!FOXP1;;chr2:68592394..68592405,+!p2@PLEK!0.97!8.28!PLEK;;chr20:3321190..3321215,-!p7@C20orf194!0.97!8.28!C20orf194;;chr12:26277817..26277863,-!p2@BHLHE41!0.96!11.20!BHLHE41;;chr11:47400045..47400060,-!p6@SPI1!0.95!7.84!SPI1;;chr16:79633664..79633681,-!p9@MAF!0.95!7.84!MAF;;chrY:2803415..2803468,+!p1@ZFY!0.95!7.84!ZFY;;chr9:88969303..88969335,-!p1@ZCCHC6!0.93!73.67!ZCCHC6;;chr2:178128149..178128198,-!p2@NFE2L2!0.93!41.42!NFE2L2;;chr12:12764947..12764986,+!p2@CREBL2!0.91!14.33!CREBL2;;chr2:113999397..113999413,-!p17@PAX8!0.91!7.17!PAX8;;chr4:26165146..26165163,+!p19@RBPJ!0.90!6.94!RBPJ;;chr6:391743..391759,+!p1@IRF4!0.90!6.94!IRF4;;chr1:25256756..25256774,-!p1@RUNX3!0.89!13.21!RUNX3;;chr16:3313791..3313834,+!p2@ZNF263!0.88!15.00!ZNF263;;chr4:185395633..185395651,-!p2@IRF2!0.88!10.97!IRF2;;chr11:47400032..47400043,-!p5@SPI1!0.87!6.49!SPI1;;chr1:167298300..167298319,+!p2@POU2F1!0.87!6.49!POU2F1;;chr2:145275947..145275981,-!p10@ZEB2!0.86!6.27!ZEB2;;chr2:231090433..231090469,+!p1@SP140!0.85!6.05!SP140;;chr8:48650715..48650735,-!p1@CEBPD!0.84!806.99!CEBPD;;chr1:158979686..158979745,+!p1@IFI16!0.84!206.45!IFI16;;chr5:88179017..88179046,-!p2@MEF2C!0.83!24.63!MEF2C;;chr11:113930291..113930339,+!p2@ZBTB16!0.83!9.63!ZBTB16;;chr12:54785074..54785122,-!p2@ZNF385A!0.83!9.18!ZNF385A;;chrX:106960285..106960299,-!p1@TSC22D3!0.82!162.56!TSC22D3;;chr19:926001..926046,+!p1@ARID3A!0.81!20.15!ARID3A;;chr9:88969287..88969297,-!p3@ZCCHC6!0.81!7.61!ZCCHC6;;chr8:116681194..116681214,-!p1@TRPS1!0.80!53.29!TRPS1;;chr4:106068026..106068084,+!p1@TET2!0.80!51.95!TET2;;chr12:101869096..101869118,+!p1@SPIC!0.80!5.37!SPIC;;chr16:79633682..79633694,-!p12@MAF!0.80!5.37!MAF;;chr7:149470641..149470694,-!p1@ZNF467!0.79!25.08!ZNF467;;chr4:87857433..87857472,+!p9@AFF1!0.79!9.63!AFF1;;chr16:88752889..88752921,-!p1@SNAI3!0.79!6.05!SNAI3;;chr2:145277792..145277808,-!p15@ZEB2!0.79!5.15!ZEB2;;chrY:21906761..21906810,-!p2@KDM5D!0.79!5.15!KDM5D;;chr14:68283291..68283323,-!p1@ZFYVE26!0.78!90.46!ZFYVE26;;chr2:61108695..61108753,+!p1@REL!0.78!37.62!REL;;chrX:131623044..131623089,-!p1@MBNL3!0.78!22.84!MBNL3;;chr20:3388238..3388323,-!p1@C20orf194!0.77!38.07!C20orf194;;chr3:48282587..48282603,+!p1@ZNF589!0.77!23.74!ZNF589;;chr18:52989031..52989079,-!p2@TCF4!0.7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|expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.57!368.79!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.44!272.73!PLEK;;chr16:85932760..85932775,+!p1@IRF8!2.37!235.78!IRF8;;chr7:115670804..115670825,-!p1@TFEC!2.14!137.04!TFEC;;chr20:39317868..39317884,-!p1@MAFB!1.97!1036.06!MAFB;;chr16:79634624..79634642,-!p1@MAF!1.96!334.53!MAF;;chr12:54778471..54778528,-!p1@ZNF385A!1.88!75.24!ZNF385A;;chr10:51572408..51572454,+!p3@NCOA4!1.81!352.67!NCOA4;;chr10:31288398..31288455,-!p2@ZNF438!1.70!56.87!ZNF438;;chr4:26165074..26165110,+!p9@RBPJ!1.64!42.54!RBPJ;;chr11:47400062..47400077,-!p2@SPI1!1.62!40.53!SPI1;;chr2:145277882..145277967,-!p3@ZEB2!1.61!66.73!ZEB2;;chr16:79634595..79634620,-!p2@MAF!1.55!61.80!MAF;;chr2:122042770..122042785,-!p1@TFCP2L1!1.55!34.48!TFCP2L1;;chr7:137620650..137620677,-!p3@CREB3L2!1.51!31.57!CREB3L2;;chr2:145277640..145277771,-!p1@ZEB2!1.50!392.52!ZEB2;;chr14:75988771..75988826,+!p1@BATF!1.49!39.86!BATF;;chr16:67198683..67198698,+!p2@HSF4!1.49!30.00!HSF4;;chr7:128577972..128578047,+!p1@IRF5!1.48!45.23!IRF5;;chr7:137620684..137620711,-!p4@CREB3L2!1.46!27.54!CREB3L2;;chr16:79633894..79633954,-!p3@MAF!1.42!47.69!MAF;;chr2:113999360..113999386,-!p4@PAX8!1.42!25.53!PAX8;;chr11:47279504..47279563,+!p1@NR1H3!1.41!54.41!NR1H3;;chrY:21906594..21906622,-!p1@KDM5D!1.38!22.84!KDM5D;;chr12:26277956..26277980,-!p1@BHLHE41!1.34!73.22!BHLHE41;;chr7:50343634..50343717,+!p2@IKZF1!1.33!20.60!IKZF1;;chr1:78050720..78050734,-!p9@ZZZ3!1.33!20.38!ZZZ3;;chr7:50344289..50344323,+!p1@IKZF1!1.32!19.70!IKZF1;;chr19:33793430..33793447,-!p1@CEBPA!1.31!79.71!CEBPA;;chr10:51572339..51572376,+!p4@NCOA4!1.31!42.99!NCOA4;;chr16:79634581..79634592,-!p4@MAF!1.29!18.58!MAF;;chr12:12764995..12765017,+!p3@CREBL2!1.22!21.72!CREBL2;;chr11:47399996..47400014,-!p4@SPI1!1.17!13.66!SPI1;;chr19:13213662..13213686,-!p1@LYL1!1.14!18.81!LYL1;;chr11:47399947..47399961,-!p3@SPI1!1.14!12.76!SPI1;;chr3:69788576..69788648,+!p1@MITF!1.11!63.59!MITF;;chr2:145275982..145276003,-!p7@ZEB2!1.11!11.87!ZEB2;;chr19:13213954..13214021,-!p4@LYL1!1.11!11.87!LYL1;;chr12:26277929..26277955,-!p3@BHLHE41!1.09!16.12!BHLHE41;;chr11:128563948..128564003,+!p1@FLI1!1.08!134.57!FLI1;;chr16:79634464..79634493,-!p5@MAF!1.08!10.97!MAF;;chr6:144385698..144385742,-!p2@PLAGL1!1.04!12.32!PLAGL1;;chr16:67198633..67198671,+!p1@HSF4!1.04!10.08!HSF4;;chr10:31288370..31288393,-!p3@ZNF438!1.04!9.85!ZNF438;;chr17:40440481..40440550,+!p1@STAT5A!1.03!70.09!STAT5A;;chr3:114343039..114343085,-!p8@ZBTB20!1.03!9.63!ZBTB20;;chr5:88178983..88179012,-!p1@MEF2C!1.02!73.89!MEF2C;;chr13:41593425..41593480,-!p1@ELF1!1.02!61.80!ELF1;;chr7:115670792..115670797,-!p2@TFEC!1.00!8.96!TFEC;;chr19:13213704..13213726,-!p3@LYL1!0.99!11.64!LYL1;;chr3:71179699..71179744,-!p2@FOXP1!0.97!64.04!FOXP1;;chr2:68592394..68592405,+!p2@PLEK!0.97!8.28!PLEK;;chr20:3321190..3321215,-!p7@C20orf194!0.97!8.28!C20orf194;;chr12:26277817..26277863,-!p2@BHLHE41!0.96!11.20!BHLHE41;;chr11:47400045..47400060,-!p6@SPI1!0.95!7.84!SPI1;;chr16:79633664..79633681,-!p9@MAF!0.95!7.84!MAF;;chrY:2803415..2803468,+!p1@ZFY!0.95!7.84!ZFY;;chr9:88969303..88969335,-!p1@ZCCHC6!0.93!73.67!ZCCHC6;;chr2:178128149..178128198,-!p2@NFE2L2!0.93!41.42!NFE2L2;;chr12:12764947..12764986,+!p2@CREBL2!0.91!14.33!CREBL2;;chr2:113999397..113999413,-!p17@PAX8!0.91!7.17!PAX8;;chr4:26165146..26165163,+!p19@RBPJ!0.90!6.94!RBPJ;;chr6:391743..391759,+!p1@IRF4!0.90!6.94!IRF4;;chr1:25256756..25256774,-!p1@RUNX3!0.89!13.21!RUNX3;;chr16:3313791..3313834,+!p2@ZNF263!0.88!15.00!ZNF263;;chr4:185395633..185395651,-!p2@IRF2!0.88!10.97!IRF2;;chr11:47400032..47400043,-!p5@SPI1!0.87!6.49!SPI1;;chr1:167298300..167298319,+!p2@POU2F1!0.87!6.49!POU2F1;;chr2:145275947..145275981,-!p10@ZEB2!0.86!6.27!ZEB2;;chr2:231090433..231090469,+!p1@SP140!0.85!6.05!SP140;;chr8:48650715..48650735,-!p1@CEBPD!0.84!806.99!CEBPD;;chr1:158979686..158979745,+!p1@IFI16!0.84!206.45!IFI16;;chr5:88179017..88179046,-!p2@MEF2C!0.83!24.63!MEF2C;;chr11:113930291..113930339,+!p2@ZBTB16!0.83!9.63!ZBTB16;;chr12:54785074..54785122,-!p2@ZNF385A!0.83!9.18!ZNF385A;;chrX:106960285..106960299,-!p1@TSC22D3!0.82!162.56!TSC22D3;;chr19:926001..926046,+!p1@ARID3A!0.81!20.15!ARID3A;;chr9:88969287..88969297,-!p3@ZCCHC6!0.81!7.61!ZCCHC6;;chr8:116681194..116681214,-!p1@TRPS1!0.80!53.29!TRPS1;;chr4:106068026..106068084,+!p1@TET2!0.80!51.95!TET2;;chr12:101869096..101869118,+!p1@SPIC!0.80!5.37!SPIC;;chr16:79633682..79633694,-!p12@MAF!0.80!5.37!MAF;;chr7:149470641..149470694,-!p1@ZNF467!0.79!25.08!ZNF467;;chr4:87857433..87857472,+!p9@AFF1!0.79!9.63!AFF1;;chr16:88752889..88752921,-!p1@SNAI3!0.79!6.05!SNAI3;;chr2:145277792..145277808,-!p15@ZEB2!0.79!5.15!ZEB2;;chrY:21906761..21906810,-!p2@KDM5D!0.79!5.15!KDM5D;;chr14:68283291..68283323,-!p1@ZFYVE26!0.78!90.46!ZFYVE26;;chr2:61108695..61108753,+!p1@REL!0.78!37.62!REL;;chrX:131623044..131623089,-!p1@MBNL3!0.78!22.84!MBNL3;;chr20:3388238..3388323,-!p1@C20orf194!0.77!38.07!C20orf194;;chr3:48282587..48282603,+!p1@ZNF589!0.77!23.74!ZNF589;;chr18:52989031..52989079,-!p2@TCF4!0.7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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002619;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0000222
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0000222
|fonse_cell_line=
|fonse_cell_line=
Line 39: Line 45:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.CNhs10858.11229-116C5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.CNhs10858.11229-116C5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.CNhs10858.11229-116C5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.CNhs10858.11229-116C5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.CNhs10858.11229-116C5.hg38.nobarcode.ctss.bed.gz
|id=FF:11229-116C5
|id=FF:11229-116C5
|is_a=CL:0000576;;EFO:0002091;;FF:0000248
|is_a=CL:0000576;;EFO:0002091;;FF:0000248
|is_obsolete=
|is_obsolete=
|library_ids=CNhs10858
|library_id=CNhs10858
|library_id_phase_based=2:CNhs10858
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11229
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.TGACCA.11229
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11229
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.TGACCA.11229
|name=CD14+ monocyte derived endothelial progenitor cells, donor1
|name=CD14+ monocyte derived endothelial progenitor cells, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 48: Line 66:
|profile_cagescan=NCig10041,,,
|profile_cagescan=NCig10041,,,
|profile_hcage=CNhs10858,LSID702,release008,COMPLETED
|profile_hcage=CNhs10858,LSID702,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10010,,,
|profile_srnaseq=SRhi10010,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 64: Line 83:
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|sample_category=primary cells
Line 87: Line 107:
|top_motifs=SREBF1,2:3.62664998202;TLX2:2.63845115602;IKZF2:1.80822443956;IRF7:1.49493765927;SPIB:1.34146275389;RXRA_VDR{dimer}:1.33999112211;DMAP1_NCOR{1,2}_SMARC:1.33995057468;STAT1,3:1.3225228957;IRF1,2:1.26467608326;FOXD3:1.23352413094;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.19190909907;EN1,2:1.13880905642;SPI1:1.10479248321;MAFB:1.07544798599;ELF1,2,4:1.04828508254;NFE2L2:0.98627985725;T:0.954614460077;ETS1,2:0.915694239069;AR:0.900631924617;TGIF1:0.823899207143;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.780592669127;ARID5B:0.744185791485;EBF1:0.741591944816;RORA:0.735456703369;FOXO1,3,4:0.72334602232;FOX{D1,D2}:0.719425530177;NKX2-2,8:0.695935132305;HNF4A_NR2F1,2:0.677442067794;NFIL3:0.65055956291;FOXP1:0.640719297282;ESR1:0.594253620522;CUX2:0.563438281705;NFIX:0.552466081264;NANOG{mouse}:0.524123636974;HBP1_HMGB_SSRP1_UBTF:0.507957191269;FOX{F1,F2,J1}:0.476185700371;TFCP2:0.475485077926;CDX1,2,4:0.465066273607;FOXA2:0.450099984349;ESRRA:0.408635100174;RUNX1..3:0.394953609026;STAT2,4,6:0.386397601208;PAX2:0.368271781635;PAX1,9:0.36102969369;CEBPA,B_DDIT3:0.354867951841;POU5F1:0.348139871812;NR6A1:0.332360069992;NKX3-2:0.332102625353;FOXN1:0.323748684072;RXR{A,B,G}:0.276049624534;OCT4_SOX2{dimer}:0.261464308324;SMAD1..7,9:0.236878670386;PRDM1:0.216963154143;ZBTB16:0.208605187624;AIRE:0.181075360772;DBP:0.136708091794;MYOD1:0.128180790585;MYFfamily:0.124601636686;TFAP4:0.121633561369;NHLH1,2:0.109560229302;EP300:0.104514127318;PRRX1,2:0.0959212080138;HAND1,2:0.0782747624863;NKX2-3_NKX2-5:0.0751886509066;GATA4:0.047010699774;TAL1_TCF{3,4,12}:0.0461538238837;BPTF:0.0456724769268;ELK1,4_GABP{A,B1}:0.0445900664717;YY1:0.0349885841784;SPZ1:0.0314482675596;ZNF143:0.0244866197944;GATA6:0.0146651979958;HMX1:0.0114361467324;NKX6-1,2:-0.00943115084842;PAX8:-0.0242999143548;MYB:-0.0421497584356;PDX1:-0.0551889265185;NFE2:-0.0825412049339;HMGA1,2:-0.0880210946231;MTF1:-0.0898056654225;FOXP3:-0.105452195755;LHX3,4:-0.106353617434;NFKB1_REL_RELA:-0.119270492265;RFX2..5_RFXANK_RFXAP:-0.133667561665;NRF1:-0.143632686246;PAX4:-0.158692877472;HLF:-0.160102055767;PITX1..3:-0.166865431245;PAX6:-0.17969862985;ALX1:-0.181198100735;VSX1,2:-0.192441129494;RBPJ:-0.286033081924;NR5A1,2:-0.293625011541;SP1:-0.299117058893;HOX{A4,D4}:-0.335194071508;NANOG:-0.335549848989;FOX{I1,J2}:-0.339668755671;KLF4:-0.340215680182;ZNF238:-0.355227364702;LMO2:-0.369327824926;FOSL2:-0.374159515429;BREu{core}:-0.379766326457;HSF1,2:-0.397711176791;HNF1A:-0.399676059175;ZFP161:-0.399702074721;HES1:-0.409512922689;TFAP2{A,C}:-0.422614699924;TOPORS:-0.434006029315;PPARG:-0.434848068977;GLI1..3:-0.443694718058;STAT5{A,B}:-0.477780903831;ADNP_IRX_SIX_ZHX:-0.48603761271;ATF5_CREB3:-0.499289592368;CRX:-0.5033163815;ZNF148:-0.513791104168;REST:-0.520686252344;SOX{8,9,10}:-0.525741372738;FOS_FOS{B,L1}_JUN{B,D}:-0.534052438825;ATF4:-0.535140223396;MZF1:-0.54386756363;MAZ:-0.548841619412;XBP1:-0.55020210265;EVI1:-0.552657639023;bHLH_family:-0.553699235671;MED-1{core}:-0.568105494392;ZEB1:-0.572179653138;AHR_ARNT_ARNT2:-0.572768907718;FOXQ1:-0.580631460718;SOX2:-0.590071883661;SOX5:-0.593973347521;XCPE1{core}:-0.607108258635;POU1F1:-0.60884828883;ATF2:-0.631096304855;IKZF1:-0.66114160299;PAX3,7:-0.6745665663;BACH2:-0.677697634419;GTF2I:-0.678142784305;GZF1:-0.69850802456;EGR1..3:-0.699341525068;ZBTB6:-0.713369144182;PATZ1:-0.71852277169;TLX1..3_NFIC{dimer}:-0.730174716867;NFATC1..3:-0.739490387735;SNAI1..3:-0.769861326686;HOX{A5,B5}:-0.769862549025;GTF2A1,2:-0.77808770364;CREB1:-0.785146873958;E2F1..5:-0.799058647919;ALX4:-0.824012165404;FOXM1:-0.833357751852;GFI1:-0.839368525144;NR3C1:-0.840155681451;MTE{core}:-0.847176250316;PAX5:-0.847538584384;MYBL2:-0.84955631843;GCM1,2:-0.869589529182;MEF2{A,B,C,D}:-0.871197674039;HOX{A6,A7,B6,B7}:-0.874283933659;POU2F1..3:-0.876103830998;ZNF423:-0.887305944959;HIF1A:-0.888352738991;UFEwm:-0.932997569931;GFI1B:-0.934509781892;NFY{A,B,C}:-0.950121181355;SOX17:-0.953353413151;POU3F1..4:-0.969207363401;RREB1:-0.969597413393;NKX3-1:-0.976617060971;NFE2L1:-1.00487076187;TFAP2B:-1.01349573428;CDC5L:-1.06857996018;HIC1:-1.06955128421;TEF:-1.07733959084;TP53:-1.1090317085;HOXA9_MEIS1:-1.11882178837;NR1H4:-1.12122489168;TEAD1:-1.14900859196;TFDP1:-1.15853500034;TBP:-1.17166106823;LEF1_TCF7_TCF7L1,2:-1.17875124385;ATF6:-1.19830111713;PBX1:-1.25472683281;RFX1:-1.42960906133;ZNF384:-1.45042489487;POU6F1:-1.46354176342;FOXL1:-1.52289049587;SRF:-1.54479629274;ZIC1..3:-1.65297328784;NKX2-1,4:-1.68689145243;JUN:-1.82001671659;TBX4,5:-1.92565556022;ONECUT1,2:-1.97415036441
|top_motifs=SREBF1,2:3.62664998202;TLX2:2.63845115602;IKZF2:1.80822443956;IRF7:1.49493765927;SPIB:1.34146275389;RXRA_VDR{dimer}:1.33999112211;DMAP1_NCOR{1,2}_SMARC:1.33995057468;STAT1,3:1.3225228957;IRF1,2:1.26467608326;FOXD3:1.23352413094;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.19190909907;EN1,2:1.13880905642;SPI1:1.10479248321;MAFB:1.07544798599;ELF1,2,4:1.04828508254;NFE2L2:0.98627985725;T:0.954614460077;ETS1,2:0.915694239069;AR:0.900631924617;TGIF1:0.823899207143;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.780592669127;ARID5B:0.744185791485;EBF1:0.741591944816;RORA:0.735456703369;FOXO1,3,4:0.72334602232;FOX{D1,D2}:0.719425530177;NKX2-2,8:0.695935132305;HNF4A_NR2F1,2:0.677442067794;NFIL3:0.65055956291;FOXP1:0.640719297282;ESR1:0.594253620522;CUX2:0.563438281705;NFIX:0.552466081264;NANOG{mouse}:0.524123636974;HBP1_HMGB_SSRP1_UBTF:0.507957191269;FOX{F1,F2,J1}:0.476185700371;TFCP2:0.475485077926;CDX1,2,4:0.465066273607;FOXA2:0.450099984349;ESRRA:0.408635100174;RUNX1..3:0.394953609026;STAT2,4,6:0.386397601208;PAX2:0.368271781635;PAX1,9:0.36102969369;CEBPA,B_DDIT3:0.354867951841;POU5F1:0.348139871812;NR6A1:0.332360069992;NKX3-2:0.332102625353;FOXN1:0.323748684072;RXR{A,B,G}:0.276049624534;OCT4_SOX2{dimer}:0.261464308324;SMAD1..7,9:0.236878670386;PRDM1:0.216963154143;ZBTB16:0.208605187624;AIRE:0.181075360772;DBP:0.136708091794;MYOD1:0.128180790585;MYFfamily:0.124601636686;TFAP4:0.121633561369;NHLH1,2:0.109560229302;EP300:0.104514127318;PRRX1,2:0.0959212080138;HAND1,2:0.0782747624863;NKX2-3_NKX2-5:0.0751886509066;GATA4:0.047010699774;TAL1_TCF{3,4,12}:0.0461538238837;BPTF:0.0456724769268;ELK1,4_GABP{A,B1}:0.0445900664717;YY1:0.0349885841784;SPZ1:0.0314482675596;ZNF143:0.0244866197944;GATA6:0.0146651979958;HMX1:0.0114361467324;NKX6-1,2:-0.00943115084842;PAX8:-0.0242999143548;MYB:-0.0421497584356;PDX1:-0.0551889265185;NFE2:-0.0825412049339;HMGA1,2:-0.0880210946231;MTF1:-0.0898056654225;FOXP3:-0.105452195755;LHX3,4:-0.106353617434;NFKB1_REL_RELA:-0.119270492265;RFX2..5_RFXANK_RFXAP:-0.133667561665;NRF1:-0.143632686246;PAX4:-0.158692877472;HLF:-0.160102055767;PITX1..3:-0.166865431245;PAX6:-0.17969862985;ALX1:-0.181198100735;VSX1,2:-0.192441129494;RBPJ:-0.286033081924;NR5A1,2:-0.293625011541;SP1:-0.299117058893;HOX{A4,D4}:-0.335194071508;NANOG:-0.335549848989;FOX{I1,J2}:-0.339668755671;KLF4:-0.340215680182;ZNF238:-0.355227364702;LMO2:-0.369327824926;FOSL2:-0.374159515429;BREu{core}:-0.379766326457;HSF1,2:-0.397711176791;HNF1A:-0.399676059175;ZFP161:-0.399702074721;HES1:-0.409512922689;TFAP2{A,C}:-0.422614699924;TOPORS:-0.434006029315;PPARG:-0.434848068977;GLI1..3:-0.443694718058;STAT5{A,B}:-0.477780903831;ADNP_IRX_SIX_ZHX:-0.48603761271;ATF5_CREB3:-0.499289592368;CRX:-0.5033163815;ZNF148:-0.513791104168;REST:-0.520686252344;SOX{8,9,10}:-0.525741372738;FOS_FOS{B,L1}_JUN{B,D}:-0.534052438825;ATF4:-0.535140223396;MZF1:-0.54386756363;MAZ:-0.548841619412;XBP1:-0.55020210265;EVI1:-0.552657639023;bHLH_family:-0.553699235671;MED-1{core}:-0.568105494392;ZEB1:-0.572179653138;AHR_ARNT_ARNT2:-0.572768907718;FOXQ1:-0.580631460718;SOX2:-0.590071883661;SOX5:-0.593973347521;XCPE1{core}:-0.607108258635;POU1F1:-0.60884828883;ATF2:-0.631096304855;IKZF1:-0.66114160299;PAX3,7:-0.6745665663;BACH2:-0.677697634419;GTF2I:-0.678142784305;GZF1:-0.69850802456;EGR1..3:-0.699341525068;ZBTB6:-0.713369144182;PATZ1:-0.71852277169;TLX1..3_NFIC{dimer}:-0.730174716867;NFATC1..3:-0.739490387735;SNAI1..3:-0.769861326686;HOX{A5,B5}:-0.769862549025;GTF2A1,2:-0.77808770364;CREB1:-0.785146873958;E2F1..5:-0.799058647919;ALX4:-0.824012165404;FOXM1:-0.833357751852;GFI1:-0.839368525144;NR3C1:-0.840155681451;MTE{core}:-0.847176250316;PAX5:-0.847538584384;MYBL2:-0.84955631843;GCM1,2:-0.869589529182;MEF2{A,B,C,D}:-0.871197674039;HOX{A6,A7,B6,B7}:-0.874283933659;POU2F1..3:-0.876103830998;ZNF423:-0.887305944959;HIF1A:-0.888352738991;UFEwm:-0.932997569931;GFI1B:-0.934509781892;NFY{A,B,C}:-0.950121181355;SOX17:-0.953353413151;POU3F1..4:-0.969207363401;RREB1:-0.969597413393;NKX3-1:-0.976617060971;NFE2L1:-1.00487076187;TFAP2B:-1.01349573428;CDC5L:-1.06857996018;HIC1:-1.06955128421;TEF:-1.07733959084;TP53:-1.1090317085;HOXA9_MEIS1:-1.11882178837;NR1H4:-1.12122489168;TEAD1:-1.14900859196;TFDP1:-1.15853500034;TBP:-1.17166106823;LEF1_TCF7_TCF7L1,2:-1.17875124385;ATF6:-1.19830111713;PBX1:-1.25472683281;RFX1:-1.42960906133;ZNF384:-1.45042489487;POU6F1:-1.46354176342;FOXL1:-1.52289049587;SRF:-1.54479629274;ZIC1..3:-1.65297328784;NKX2-1,4:-1.68689145243;JUN:-1.82001671659;TBX4,5:-1.92565556022;ONECUT1,2:-1.97415036441
|xref=
|xref=
}} {{DRAAccessionNumbers
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11229-116C5;search_select_hide=table117:FF:11229-116C5
|DRA_sample_Accession=CAGE@DRS008022
|accession_numbers=DRX008129;DRR009001;DRZ000426;DRZ001811;CAGE
|library_id=CNhs10858
}}
}}

Latest revision as of 16:26, 3 June 2020

Name:CD14+ monocyte derived endothelial progenitor cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10858
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage65 years old adult
sexmale
age65
cell typeblood vessel endothelial progenitor cell
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberEPC722
catalog number3H100-81-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005343
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10858 CAGE DRX008129 DRR009001
Accession ID Hg19

Library idBAMCTSS
CNhs10858 DRZ000426 DRZ001811
Accession ID Hg38

Library idBAMCTSS
CNhs10858 DRZ011776 DRZ013161
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10041downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005343
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10010.TGACCA sRNA-Seq DRX037147 DRR041513
Accession ID Hg19

Library idBAMCTSS
SRhi10010.TGACCA DRZ007155


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.153
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.0347
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.291
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.773
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0878
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0878
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.196
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.0504
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.249
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.539
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0833
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0262
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.223
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0737
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.532
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.676
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.297
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0659
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0353
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.0878
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.555
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0135
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral1.352
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0669
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.37
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.00755
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.341
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.0691
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung1.216
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.511
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10858

Jaspar motifP-value
MA0002.29.86877e-5
MA0003.10.091
MA0004.10.116
MA0006.10.702
MA0007.10.0673
MA0009.10.21
MA0014.10.551
MA0017.15.89875e-4
MA0018.22.4191e-4
MA0019.10.479
MA0024.10.00873
MA0025.10.6
MA0027.10.716
MA0028.10.3
MA0029.10.948
MA0030.10.4
MA0031.10.578
MA0035.20.676
MA0038.10.115
MA0039.20.497
MA0040.10.915
MA0041.10.353
MA0042.10.685
MA0043.10.00582
MA0046.10.305
MA0047.20.0781
MA0048.10.294
MA0050.15.43716e-9
MA0051.19.90974e-4
MA0052.10.045
MA0055.10.459
MA0057.10.749
MA0058.10.00499
MA0059.10.548
MA0060.15.01677e-7
MA0061.10.23
MA0062.22.37009e-4
MA0065.20.00446
MA0066.10.151
MA0067.10.151
MA0068.10.483
MA0069.10.8
MA0070.10.153
MA0071.10.206
MA0072.10.758
MA0073.10.611
MA0074.10.152
MA0076.10.304
MA0077.10.342
MA0078.10.415
MA0079.20.287
MA0080.21.42555e-17
MA0081.11.57517e-4
MA0083.12.97472e-4
MA0084.10.295
MA0087.10.589
MA0088.10.141
MA0090.10.0122
MA0091.10.207
MA0092.10.847
MA0093.10.102
MA0099.20.0713
MA0100.10.987
MA0101.10.983
MA0102.20.00436
MA0103.10.684
MA0104.20.867
MA0105.10.0131
MA0106.10.502
MA0107.10.918
MA0108.29.0416e-11
MA0111.10.27
MA0112.24.5828e-4
MA0113.10.139
MA0114.10.00728
MA0115.10.341
MA0116.18.47177e-5
MA0117.10.933
MA0119.10.602
MA0122.10.425
MA0124.10.32
MA0125.10.625
MA0131.10.334
MA0135.10.51
MA0136.16.8603e-15
MA0137.20.0212
MA0138.20.847
MA0139.10.571
MA0140.10.989
MA0141.10.0277
MA0142.10.258
MA0143.10.105
MA0144.10.0339
MA0145.10.209
MA0146.10.0129
MA0147.10.678
MA0148.10.752
MA0149.10.189
MA0150.10.164
MA0152.10.571
MA0153.10.0781
MA0154.10.00166
MA0155.10.838
MA0156.11.79027e-9
MA0157.10.096
MA0159.10.0284
MA0160.10.0346
MA0162.10.737
MA0163.12.60298e-8
MA0164.10.849
MA0258.10.0036
MA0259.10.314



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10858

Novel motifP-value
10.25
100.0266
1000.917
1010.29
1020.976
1030.194
1040.937
1050.477
1060.14
1070.555
1080.943
1090.0442
110.0647
1100.217
1110.0437
1120.255
1130.996
1140.0867
1150.224
1160.755
1170.0129
1180.27
1190.101
120.399
1200.401
1210.766
1220.557
1230.129
1240.251
1250.293
1260.0866
1270.136
1280.121
1290.709
130.0604
1300.839
1310.449
1320.835
1330.871
1340.926
1350.0914
1360.891
1370.0142
1380.0552
1390.0231
140.144
1400.383
1410.684
1420.119
1430.517
1440.326
1450.455
1460.89
1470.432
1480.0113
1490.614
150.213
1500.47
1510.814
1520.473
1530.934
1540.92
1550.216
1560.937
1570.8
1580.913
1590.246
160.289
1600.496
1610.459
1620.731
1630.287
1640.158
1650.0854
1660.653
1670.76
1680.262
1690.0121
170.264
180.553
190.207
20.804
200.803
210.265
220.102
230.559
240.0198
250.593
260.0845
270.139
280.495
290.166
30.0103
300.789
310.385
320.707
330.474
340.273
350.286
360.126
370.132
380.12
390.876
40.899
400.17
410.266
420.287
430.0801
440.432
450.567
460.209
470.439
480.268
490.152
50.182
500.637
510.524
520.333
530.228
540.374
550.0146
560.66
570.539
580.119
590.112
60.387
600.0795
610.129
620.184
630.264
640.275
650.105
660.943
670.206
680.484
690.868
70.142
700.0234
710.0533
720.245
730.101
740.631
750.0247
760.17
770.168
780.092
790.565
80.125
800.232
810.226
820.0986
830.517
840.44
850.107
860.0217
870.106
880.234
890.347
90.321
900.0227
910.807
920.124
930.846
940.0842
950.399
960.25
970.797
980.411
990.607



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10858


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0000766 (myeloid leukocyte)
0002078 (meso-epithelial cell)
0000219 (motile cell)
0000215 (barrier cell)
0000134 (mesenchymal cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000034 (stem cell)
0000576 (monocyte)
0000115 (endothelial cell)
0000566 (angioblastic mesenchymal cell)
0002619 (adult endothelial progenitor cell)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000248 (human endothelial progenitor cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)

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