FF:11227-116C3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |CNhs11062= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession=CAGE@SAMD00004823 | ||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004823 | |||
|accession_numbers=CAGE;DRX008212;DRR009084;DRZ000509;DRZ001894;DRZ011859;DRZ013244!CAGE;DRX008213;DRR009085;DRZ000510;DRZ001895;DRZ011860;DRZ013245 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX036991;DRR041357;DRZ006999 | |||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000840 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000044 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 35: | Line 45: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520monocyte%2520immature%2520derived%252c%2520donor1%252c%2520tech_rep1.CNhs10855.11227-116C3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520monocyte%2520immature%2520derived%252c%2520donor1%252c%2520tech_rep1.CNhs10855.11227-116C3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520monocyte%2520immature%2520derived%252c%2520donor1%252c%2520tech_rep1.CNhs10855.11227-116C3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520monocyte%2520immature%2520derived%252c%2520donor1%252c%2520tech_rep1.CNhs10855.11227-116C3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520monocyte%2520immature%2520derived%252c%2520donor1%252c%2520tech_rep1.CNhs10855.11227-116C3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11227-116C3 | |id=FF:11227-116C3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000044 | ||
|is_obsolete= | |||
|library_id=CNhs10855!CNhs11062 | |||
|library_id_phase_based=2:CNhs11062 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11227 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.TGACCA.11227 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11227 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.TGACCA.11227 | |||
|name=Dendritic Cells - monocyte immature derived, donor1 | |name=Dendritic Cells - monocyte immature derived, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 42: | Line 66: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10855 & CNhs11062,LSID702,release008,COMPLETED | |profile_hcage=CNhs10855 & CNhs11062,LSID702,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10002,,, | |profile_srnaseq=SRhi10002,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=3H100-70-5 | |rna_catalog_number=3H100-70-5 | ||
Line 56: | Line 83: | ||
|rna_tube_id=116C3 | |rna_tube_id=116C3 | ||
|rna_weight_ug=5 | |rna_weight_ug=5 | ||
|rnaseq_library_id=SRhi10002.TGACCA | |||
|sample_age=57 | |sample_age=57 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 69: | Line 98: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.37955509480854e-220!GO:0005737;cytoplasm;3.08717157791422e-171!GO:0043227;membrane-bound organelle;2.16804693643521e-155!GO:0043231;intracellular membrane-bound organelle;5.33715665265303e-155!GO:0043226;organelle;3.18349658425463e-142!GO:0043229;intracellular organelle;1.34107145264996e-141!GO:0044444;cytoplasmic part;1.45496508054539e-131!GO:0044422;organelle part;2.34961469695584e-103!GO:0044446;intracellular organelle part;1.42180076610087e-101!GO:0044237;cellular metabolic process;2.64106410412594e-77!GO:0044238;primary metabolic process;2.84757712330523e-76!GO:0032991;macromolecular complex;1.40398943848299e-70!GO:0005739;mitochondrion;2.27836675109691e-66!GO:0043170;macromolecule metabolic process;2.27836675109691e-66!GO:0005515;protein binding;1.63753692156397e-56!GO:0030529;ribonucleoprotein complex;2.84730872951579e-56!GO:0031090;organelle membrane;4.53035094054425e-55!GO:0003723;RNA binding;7.57552485206157e-53!GO:0043233;organelle lumen;1.80178635307287e-52!GO:0031974;membrane-enclosed lumen;1.80178635307287e-52!GO:0019538;protein metabolic process;2.28686029225721e-49!GO:0033036;macromolecule localization;5.90782169275477e-48!GO:0044428;nuclear part;1.01243699160156e-47!GO:0015031;protein transport;2.81570759610195e-47!GO:0044429;mitochondrial part;3.41409840083823e-47!GO:0045184;establishment of protein localization;1.43462414889158e-45!GO:0008104;protein localization;1.9718239610515e-44!GO:0044260;cellular macromolecule metabolic process;3.1172094301133e-44!GO:0044267;cellular protein metabolic process;7.71658171225538e-44!GO:0005634;nucleus;8.26703854687091e-44!GO:0031967;organelle envelope;3.16999485555219e-41!GO:0031975;envelope;7.79370902947455e-41!GO:0006412;translation;4.97976792979692e-40!GO:0009058;biosynthetic process;2.01191704187246e-37!GO:0043234;protein complex;7.52063949063106e-37!GO:0005829;cytosol;1.92619293065227e-36!GO:0006396;RNA processing;8.69457044221758e-36!GO:0044249;cellular biosynthetic process;2.41024655608171e-34!GO:0046907;intracellular transport;3.73326693613661e-34!GO:0009059;macromolecule biosynthetic process;5.58771158783041e-34!GO:0005740;mitochondrial envelope;5.2416011837125e-33!GO:0043283;biopolymer metabolic process;6.78404041632626e-33!GO:0016071;mRNA metabolic process;5.4439924841714e-32!GO:0031966;mitochondrial membrane;1.74461494674386e-31!GO:0006886;intracellular protein transport;3.27356473634418e-31!GO:0005840;ribosome;7.90320478303064e-31!GO:0016043;cellular component organization and biogenesis;9.92373484777229e-29!GO:0031981;nuclear lumen;1.08379840087093e-28!GO:0019866;organelle inner membrane;1.7233147718158e-28!GO:0008380;RNA splicing;2.49324287574788e-28!GO:0010467;gene expression;3.55262879125559e-27!GO:0005743;mitochondrial inner membrane;4.36035761425152e-27!GO:0006397;mRNA processing;1.06608262850896e-26!GO:0003735;structural constituent of ribosome;2.26905779536133e-26!GO:0051649;establishment of cellular localization;6.87066464543297e-26!GO:0051641;cellular localization;1.95750975786988e-25!GO:0006119;oxidative phosphorylation;3.03512682600794e-24!GO:0033279;ribosomal subunit;5.88430463918437e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.08043138480782e-23!GO:0065003;macromolecular complex assembly;2.29951014433445e-22!GO:0051186;cofactor metabolic process;2.62539485062854e-21!GO:0005681;spliceosome;1.87613540723899e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.34281713699742e-20!GO:0012505;endomembrane system;7.20483342549976e-20!GO:0005654;nucleoplasm;1.47072820943573e-19!GO:0022607;cellular component assembly;3.83358732871652e-19!GO:0044455;mitochondrial membrane part;5.19488483835745e-19!GO:0044248;cellular catabolic process;1.78596412454495e-18!GO:0048770;pigment granule;2.1663979791488e-18!GO:0042470;melanosome;2.1663979791488e-18!GO:0044265;cellular macromolecule catabolic process;2.83230876001288e-18!GO:0006996;organelle organization and biogenesis;3.19192623169154e-18!GO:0006732;coenzyme metabolic process;3.36353738262006e-18!GO:0005773;vacuole;6.5939112567992e-18!GO:0006915;apoptosis;7.8601338823013e-18!GO:0000166;nucleotide binding;8.81703490559386e-18!GO:0012501;programmed cell death;9.15709974824929e-18!GO:0044445;cytosolic part;2.2000586575581e-17!GO:0006512;ubiquitin cycle;2.60356134028782e-17!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.8357899505737e-17!GO:0005794;Golgi apparatus;3.25618983270069e-17!GO:0016192;vesicle-mediated transport;4.49267099251383e-17!GO:0031980;mitochondrial lumen;4.53163158985864e-17!GO:0005759;mitochondrial matrix;4.53163158985864e-17!GO:0006457;protein folding;4.89332954316114e-17!GO:0008219;cell death;8.8041632244714e-17!GO:0016265;death;8.8041632244714e-17!GO:0043412;biopolymer modification;9.03102751881063e-17!GO:0005746;mitochondrial respiratory chain;1.41570663517588e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.16332633036307e-16!GO:0016462;pyrophosphatase activity;2.53492602660578e-16!GO:0016874;ligase activity;2.57266939194698e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;2.75795006533683e-16!GO:0000323;lytic vacuole;3.16846822480372e-16!GO:0005764;lysosome;3.16846822480372e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.72304018767014e-16!GO:0006605;protein targeting;7.607369108449e-16!GO:0017111;nucleoside-triphosphatase activity;9.93742809663941e-16!GO:0043285;biopolymer catabolic process;1.94745116579718e-15!GO:0009057;macromolecule catabolic process;2.42803985968344e-15!GO:0006464;protein modification process;3.4824516076086e-15!GO:0044451;nucleoplasm part;3.77387660051227e-15!GO:0022618;protein-RNA complex assembly;5.18329830150699e-15!GO:0008134;transcription factor binding;6.14304825713754e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;7.14794382081901e-15!GO:0005783;endoplasmic reticulum;9.18835481779294e-15!GO:0019941;modification-dependent protein catabolic process;1.12820743087777e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.12820743087777e-14!GO:0044257;cellular protein catabolic process;1.25297883869314e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.5484521572671e-14!GO:0003954;NADH dehydrogenase activity;1.5484521572671e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.5484521572671e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.72892686528702e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.29799959354779e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.03059114720444e-13!GO:0032553;ribonucleotide binding;1.45283392831376e-13!GO:0032555;purine ribonucleotide binding;1.45283392831376e-13!GO:0044432;endoplasmic reticulum part;1.45722435092035e-13!GO:0017076;purine nucleotide binding;1.88192119785306e-13!GO:0042775;organelle ATP synthesis coupled electron transport;3.63768387964768e-13!GO:0042773;ATP synthesis coupled electron transport;3.63768387964768e-13!GO:0043687;post-translational protein modification;6.03066893770138e-13!GO:0030964;NADH dehydrogenase complex (quinone);6.64628397505598e-13!GO:0045271;respiratory chain complex I;6.64628397505598e-13!GO:0005747;mitochondrial respiratory chain complex I;6.64628397505598e-13!GO:0005768;endosome;9.11184762897015e-13!GO:0015935;small ribosomal subunit;1.16226851146388e-12!GO:0006913;nucleocytoplasmic transport;1.80914667465783e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.99950857917806e-12!GO:0009056;catabolic process;3.13766159786882e-12!GO:0015934;large ribosomal subunit;3.44009419861274e-12!GO:0006259;DNA metabolic process;3.64024368652102e-12!GO:0051169;nuclear transport;3.78536231364312e-12!GO:0048193;Golgi vesicle transport;5.10245870734363e-12!GO:0003676;nucleic acid binding;6.37894528111255e-12!GO:0030163;protein catabolic process;8.30168750785197e-12!GO:0051188;cofactor biosynthetic process;8.81492615254638e-12!GO:0008135;translation factor activity, nucleic acid binding;1.01051574518738e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.27382369162568e-11!GO:0051082;unfolded protein binding;2.03677600549552e-11!GO:0009055;electron carrier activity;5.08131814795167e-11!GO:0016604;nuclear body;6.36164235198089e-11!GO:0016070;RNA metabolic process;8.42141799528694e-11!GO:0019829;cation-transporting ATPase activity;8.8368884550643e-11!GO:0042981;regulation of apoptosis;1.26913286964829e-10!GO:0016887;ATPase activity;1.51176372091332e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.52450707900376e-10!GO:0016787;hydrolase activity;1.53408530847855e-10!GO:0005730;nucleolus;1.66311079823514e-10!GO:0042623;ATPase activity, coupled;1.93554748226363e-10!GO:0043067;regulation of programmed cell death;2.2089355824524e-10!GO:0005789;endoplasmic reticulum membrane;2.51323528108354e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.7569564200483e-10!GO:0015986;ATP synthesis coupled proton transport;3.07263101734924e-10!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.07263101734924e-10!GO:0009259;ribonucleotide metabolic process;3.15457623734224e-10!GO:0005524;ATP binding;3.66874362358885e-10!GO:0008639;small protein conjugating enzyme activity;3.94612789040156e-10!GO:0032559;adenyl ribonucleotide binding;4.96876745874565e-10!GO:0009108;coenzyme biosynthetic process;5.12947014101722e-10!GO:0015078;hydrogen ion transmembrane transporter activity;5.23626303603093e-10!GO:0030554;adenyl nucleotide binding;8.05543623092434e-10!GO:0008565;protein transporter activity;8.35588485723338e-10!GO:0006163;purine nucleotide metabolic process;8.71866204459144e-10!GO:0006446;regulation of translational initiation;9.12114558058451e-10!GO:0003743;translation initiation factor activity;9.73820769589506e-10!GO:0004842;ubiquitin-protein ligase activity;1.05972839098145e-09!GO:0005761;mitochondrial ribosome;1.0756914107148e-09!GO:0000313;organellar ribosome;1.0756914107148e-09!GO:0005635;nuclear envelope;1.35225165661636e-09!GO:0006793;phosphorus metabolic process;1.35538007428936e-09!GO:0006796;phosphate metabolic process;1.35538007428936e-09!GO:0009060;aerobic respiration;1.36619468003288e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.44243284430977e-09!GO:0009150;purine ribonucleotide metabolic process;1.57267494932505e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;1.70183631989696e-09!GO:0000375;RNA splicing, via transesterification reactions;1.70183631989696e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.70183631989696e-09!GO:0043228;non-membrane-bound organelle;1.70348765540441e-09!GO:0043232;intracellular non-membrane-bound organelle;1.70348765540441e-09!GO:0019787;small conjugating protein ligase activity;1.85913858750675e-09!GO:0006413;translational initiation;2.05206866664824e-09!GO:0051246;regulation of protein metabolic process;2.48784088068099e-09!GO:0006164;purine nucleotide biosynthetic process;2.78665357966963e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.78842298517068e-09!GO:0009260;ribonucleotide biosynthetic process;2.78842298517068e-09!GO:0016607;nuclear speck;3.21643500484745e-09!GO:0016491;oxidoreductase activity;3.57316424134817e-09!GO:0009142;nucleoside triphosphate biosynthetic process;4.81755703185686e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.81755703185686e-09!GO:0009152;purine ribonucleotide biosynthetic process;4.90556745079656e-09!GO:0006461;protein complex assembly;5.14787678100182e-09!GO:0009199;ribonucleoside triphosphate metabolic process;5.17121716871305e-09!GO:0007243;protein kinase cascade;5.17121716871305e-09!GO:0006974;response to DNA damage stimulus;5.81780321359561e-09!GO:0006754;ATP biosynthetic process;5.95632100847972e-09!GO:0006753;nucleoside phosphate metabolic process;5.95632100847972e-09!GO:0017038;protein import;6.74996738389804e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.76743615204432e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.76743615204432e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.28374506695208e-09!GO:0009144;purine nucleoside triphosphate metabolic process;8.28374506695208e-09!GO:0005774;vacuolar membrane;8.39550656409071e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;8.9553700262724e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);9.48712409594968e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.00016021819066e-08!GO:0046034;ATP metabolic process;1.09067567566412e-08!GO:0044440;endosomal part;1.13064161239048e-08!GO:0010008;endosome membrane;1.13064161239048e-08!GO:0009141;nucleoside triphosphate metabolic process;1.44055870503813e-08!GO:0044431;Golgi apparatus part;1.44121308265518e-08!GO:0005793;ER-Golgi intermediate compartment;1.44121308265518e-08!GO:0045333;cellular respiration;1.82579587350592e-08!GO:0005770;late endosome;1.98665328722326e-08!GO:0005765;lysosomal membrane;4.53232935238312e-08!GO:0003712;transcription cofactor activity;5.06561053926278e-08!GO:0016469;proton-transporting two-sector ATPase complex;5.13254953226569e-08!GO:0016881;acid-amino acid ligase activity;5.2040550958811e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.54362719889026e-08!GO:0044437;vacuolar part;5.83243247140958e-08!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.17771921049527e-08!GO:0006099;tricarboxylic acid cycle;7.07423217541729e-08!GO:0046356;acetyl-CoA catabolic process;7.07423217541729e-08!GO:0016310;phosphorylation;7.90696737302013e-08!GO:0043069;negative regulation of programmed cell death;9.70267083670078e-08!GO:0050657;nucleic acid transport;1.22324794229607e-07!GO:0051236;establishment of RNA localization;1.22324794229607e-07!GO:0050658;RNA transport;1.22324794229607e-07!GO:0043066;negative regulation of apoptosis;1.23036718629255e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.38194654043751e-07!GO:0006403;RNA localization;1.80265864186588e-07!GO:0051187;cofactor catabolic process;1.81033155991151e-07!GO:0005839;proteasome core complex (sensu Eukaryota);2.064885632343e-07!GO:0006084;acetyl-CoA metabolic process;2.20882852759802e-07!GO:0044453;nuclear membrane part;2.33486093320937e-07!GO:0031965;nuclear membrane;2.41396970806356e-07!GO:0006091;generation of precursor metabolites and energy;3.29126440504989e-07!GO:0030120;vesicle coat;3.29126440504989e-07!GO:0030662;coated vesicle membrane;3.29126440504989e-07!GO:0019899;enzyme binding;3.55831464216254e-07!GO:0006916;anti-apoptosis;4.00030501150086e-07!GO:0006888;ER to Golgi vesicle-mediated transport;4.54779223940539e-07!GO:0005798;Golgi-associated vesicle;4.82224901884574e-07!GO:0007005;mitochondrion organization and biogenesis;4.90153456543045e-07!GO:0006281;DNA repair;5.65022816167092e-07!GO:0051170;nuclear import;5.6641345888144e-07!GO:0048475;coated membrane;5.73265470126795e-07!GO:0030117;membrane coat;5.73265470126795e-07!GO:0005643;nuclear pore;5.86890903169755e-07!GO:0006752;group transfer coenzyme metabolic process;5.87745567637562e-07!GO:0031982;vesicle;5.90004544141481e-07!GO:0007264;small GTPase mediated signal transduction;6.42909183549103e-07!GO:0042254;ribosome biogenesis and assembly;7.38102433478526e-07!GO:0006399;tRNA metabolic process;8.39114099515023e-07!GO:0009109;coenzyme catabolic process;8.72125216480413e-07!GO:0004298;threonine endopeptidase activity;1.1132434861951e-06!GO:0006606;protein import into nucleus;1.21725294081682e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.37774975754766e-06!GO:0007242;intracellular signaling cascade;1.65524652350415e-06!GO:0016740;transferase activity;1.69530615003021e-06!GO:0009117;nucleotide metabolic process;1.75368579557909e-06!GO:0031988;membrane-bound vesicle;1.86781524893352e-06!GO:0004386;helicase activity;2.13637214836563e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;2.15649383373232e-06!GO:0015399;primary active transmembrane transporter activity;2.15649383373232e-06!GO:0051028;mRNA transport;2.37904469562821e-06!GO:0031410;cytoplasmic vesicle;2.58436253911781e-06!GO:0065002;intracellular protein transport across a membrane;2.60525106486738e-06!GO:0016044;membrane organization and biogenesis;3.17021520856059e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.19360132306418e-06!GO:0004812;aminoacyl-tRNA ligase activity;3.19360132306418e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.19360132306418e-06!GO:0031252;leading edge;3.37317404639066e-06!GO:0032446;protein modification by small protein conjugation;3.44047080908875e-06!GO:0016567;protein ubiquitination;3.67274721008753e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.84848322557937e-06!GO:0015992;proton transport;3.96006921145584e-06!GO:0006818;hydrogen transport;3.97864421660867e-06!GO:0008026;ATP-dependent helicase activity;4.58065840677113e-06!GO:0006417;regulation of translation;4.91818343876454e-06!GO:0050794;regulation of cellular process;4.95922979934816e-06!GO:0005525;GTP binding;4.9864752997248e-06!GO:0046930;pore complex;5.45283931635345e-06!GO:0043038;amino acid activation;5.81934518041662e-06!GO:0006418;tRNA aminoacylation for protein translation;5.81934518041662e-06!GO:0043039;tRNA aminoacylation;5.81934518041662e-06!GO:0007049;cell cycle;5.84367475527777e-06!GO:0016023;cytoplasmic membrane-bound vesicle;6.18586733082873e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.48336758476633e-06!GO:0008047;enzyme activator activity;6.89364077666067e-06!GO:0045259;proton-transporting ATP synthase complex;7.5492032978742e-06!GO:0043492;ATPase activity, coupled to movement of substances;8.15383758430774e-06!GO:0000139;Golgi membrane;8.49031782424207e-06!GO:0009719;response to endogenous stimulus;8.97214174884919e-06!GO:0008654;phospholipid biosynthetic process;9.23570030507993e-06!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;9.59620620506196e-06!GO:0048523;negative regulation of cellular process;1.04918613919691e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;1.4038061380171e-05!GO:0000151;ubiquitin ligase complex;1.43665506847741e-05!GO:0065009;regulation of a molecular function;1.70037729383668e-05!GO:0044262;cellular carbohydrate metabolic process;1.84364519568518e-05!GO:0009967;positive regulation of signal transduction;1.99643555930562e-05!GO:0031902;late endosome membrane;2.11424340506495e-05!GO:0005741;mitochondrial outer membrane;2.29676629106545e-05!GO:0016568;chromatin modification;2.47695237990228e-05!GO:0006950;response to stress;2.86774986898073e-05!GO:0006613;cotranslational protein targeting to membrane;2.91627626603885e-05!GO:0051726;regulation of cell cycle;2.95595341926677e-05!GO:0022890;inorganic cation transmembrane transporter activity;3.13013451785564e-05!GO:0000074;regulation of progression through cell cycle;3.41186373203238e-05!GO:0030695;GTPase regulator activity;3.83416600379051e-05!GO:0006643;membrane lipid metabolic process;4.14455463062442e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.36860101001352e-05!GO:0030532;small nuclear ribonucleoprotein complex;4.59796908351315e-05!GO:0003924;GTPase activity;5.09198437342683e-05!GO:0006672;ceramide metabolic process;5.11563307085695e-05!GO:0045454;cell redox homeostasis;5.11563307085695e-05!GO:0046519;sphingoid metabolic process;5.69640200609265e-05!GO:0007033;vacuole organization and biogenesis;5.98903805447599e-05!GO:0043566;structure-specific DNA binding;6.38039842734556e-05!GO:0048519;negative regulation of biological process;6.455703199014e-05!GO:0032561;guanyl ribonucleotide binding;6.57024231519335e-05!GO:0019001;guanyl nucleotide binding;6.57024231519335e-05!GO:0006366;transcription from RNA polymerase II promoter;6.5756346624348e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;6.8489211395437e-05!GO:0003697;single-stranded DNA binding;7.2735394448093e-05!GO:0000245;spliceosome assembly;7.95113241027557e-05!GO:0005083;small GTPase regulator activity;8.02202168752997e-05!GO:0016564;transcription repressor activity;8.24947380820675e-05!GO:0007040;lysosome organization and biogenesis;8.24947380820675e-05!GO:0051168;nuclear export;8.32357341662976e-05!GO:0019752;carboxylic acid metabolic process;8.33022461510476e-05!GO:0031326;regulation of cellular biosynthetic process;8.70350069172244e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.97629630986155e-05!GO:0006082;organic acid metabolic process;9.53034670762398e-05!GO:0003713;transcription coactivator activity;0.000101221690174352!GO:0005096;GTPase activator activity;0.000102671561857141!GO:0006612;protein targeting to membrane;0.000118942869011785!GO:0031968;organelle outer membrane;0.0001193199093298!GO:0006364;rRNA processing;0.000131217879386194!GO:0019867;outer membrane;0.000131217879386194!GO:0005769;early endosome;0.000135146074064325!GO:0005885;Arp2/3 protein complex;0.000136477791807262!GO:0006650;glycerophospholipid metabolic process;0.000141345179396973!GO:0009165;nucleotide biosynthetic process;0.000145788019811866!GO:0006323;DNA packaging;0.000161949770264721!GO:0044255;cellular lipid metabolic process;0.000169100185944839!GO:0016072;rRNA metabolic process;0.000169334304234824!GO:0009615;response to virus;0.000169334304234824!GO:0016853;isomerase activity;0.000173586232948373!GO:0007265;Ras protein signal transduction;0.000183243486304096!GO:0043065;positive regulation of apoptosis;0.000192559091251748!GO:0009889;regulation of biosynthetic process;0.000194656354394173!GO:0005788;endoplasmic reticulum lumen;0.000220988448193332!GO:0045786;negative regulation of progression through cell cycle;0.000226988578682308!GO:0050789;regulation of biological process;0.000274214198105054!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000274695462349068!GO:0043068;positive regulation of programmed cell death;0.000277514300161789!GO:0003724;RNA helicase activity;0.000316457808846972!GO:0016779;nucleotidyltransferase activity;0.00032095105745556!GO:0045045;secretory pathway;0.000352907207820954!GO:0007034;vacuolar transport;0.000352907207820954!GO:0048522;positive regulation of cellular process;0.000361051762466176!GO:0015980;energy derivation by oxidation of organic compounds;0.000376656802079465!GO:0051276;chromosome organization and biogenesis;0.000413330138625384!GO:0001726;ruffle;0.000415496189721769!GO:0022402;cell cycle process;0.000467888891280063!GO:0005975;carbohydrate metabolic process;0.000544543870973644!GO:0046483;heterocycle metabolic process;0.000548027101279919!GO:0003714;transcription corepressor activity;0.000553248397603461!GO:0030658;transport vesicle membrane;0.000576244989219323!GO:0003729;mRNA binding;0.000597854943726033!GO:0046467;membrane lipid biosynthetic process;0.000603108718397296!GO:0006897;endocytosis;0.000689121922539371!GO:0010324;membrane invagination;0.000689121922539371!GO:0006749;glutathione metabolic process;0.000703013955920235!GO:0016197;endosome transport;0.000729961688239527!GO:0006402;mRNA catabolic process;0.00073057422846818!GO:0032940;secretion by cell;0.000805440759245585!GO:0030384;phosphoinositide metabolic process;0.000811456583937403!GO:0006917;induction of apoptosis;0.000857466706448661!GO:0008610;lipid biosynthetic process;0.000862879134632693!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000868366627614145!GO:0043021;ribonucleoprotein binding;0.000882097787963743!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000935506786557736!GO:0005762;mitochondrial large ribosomal subunit;0.000953934034802064!GO:0000315;organellar large ribosomal subunit;0.000953934034802064!GO:0005813;centrosome;0.000993709959832275!GO:0006839;mitochondrial transport;0.00108602624631581!GO:0006401;RNA catabolic process;0.00108922432694088!GO:0043087;regulation of GTPase activity;0.00108922432694088!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00112293151473716!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00112293151473716!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00112293151473716!GO:0050790;regulation of catalytic activity;0.00116407851843023!GO:0012502;induction of programmed cell death;0.00120607841772808!GO:0043623;cellular protein complex assembly;0.00120926590388812!GO:0009966;regulation of signal transduction;0.00123472019483482!GO:0030133;transport vesicle;0.00125567175839334!GO:0008632;apoptotic program;0.00125567175839334!GO:0008287;protein serine/threonine phosphatase complex;0.00129285736698828!GO:0016563;transcription activator activity;0.00130903456113544!GO:0051789;response to protein stimulus;0.00135915109218617!GO:0006986;response to unfolded protein;0.00135915109218617!GO:0006891;intra-Golgi vesicle-mediated transport;0.00139849069843248!GO:0005099;Ras GTPase activator activity;0.00144773917926466!GO:0030660;Golgi-associated vesicle membrane;0.0014493613394144!GO:0004177;aminopeptidase activity;0.00148461158510176!GO:0006607;NLS-bearing substrate import into nucleus;0.00152698395573481!GO:0033116;ER-Golgi intermediate compartment membrane;0.00154455002923284!GO:0051427;hormone receptor binding;0.00165177920862747!GO:0048471;perinuclear region of cytoplasm;0.00171303433784715!GO:0007041;lysosomal transport;0.00176031878587151!GO:0006629;lipid metabolic process;0.00180741684021092!GO:0018193;peptidyl-amino acid modification;0.00190813023433337!GO:0005694;chromosome;0.00191570679026575!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00192366740892727!GO:0046474;glycerophospholipid biosynthetic process;0.00199199775024336!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00200747060427543!GO:0030036;actin cytoskeleton organization and biogenesis;0.00200747060427543!GO:0016859;cis-trans isomerase activity;0.00201938321929804!GO:0030118;clathrin coat;0.0021452187318755!GO:0006118;electron transport;0.00215757655311951!GO:0006733;oxidoreduction coenzyme metabolic process;0.00215757655311951!GO:0019882;antigen processing and presentation;0.00216005666304857!GO:0006767;water-soluble vitamin metabolic process;0.00216005666304857!GO:0031072;heat shock protein binding;0.00216283641543323!GO:0050662;coenzyme binding;0.00230491083940461!GO:0006644;phospholipid metabolic process;0.00230491083940461!GO:0015036;disulfide oxidoreductase activity;0.00231617405322449!GO:0019377;glycolipid catabolic process;0.00238919557381653!GO:0048518;positive regulation of biological process;0.00244366592298086!GO:0008186;RNA-dependent ATPase activity;0.00251211244893326!GO:0005815;microtubule organizing center;0.00259369180290649!GO:0008234;cysteine-type peptidase activity;0.00262597849739185!GO:0007006;mitochondrial membrane organization and biogenesis;0.00271070739815713!GO:0035257;nuclear hormone receptor binding;0.00274319492660126!GO:0051920;peroxiredoxin activity;0.00284205802409933!GO:0005905;coated pit;0.00292965949973106!GO:0030176;integral to endoplasmic reticulum membrane;0.00300705191009756!GO:0019318;hexose metabolic process;0.00321416177414616!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.00335643435802583!GO:0048487;beta-tubulin binding;0.00337726202885529!GO:0006769;nicotinamide metabolic process;0.00346107372461827!GO:0031324;negative regulation of cellular metabolic process;0.0035184699831896!GO:0030149;sphingolipid catabolic process;0.00368246183175337!GO:0030867;rough endoplasmic reticulum membrane;0.00379123868732976!GO:0005996;monosaccharide metabolic process;0.0039359187467931!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00402191514568267!GO:0046489;phosphoinositide biosynthetic process;0.00409353441472987!GO:0005048;signal sequence binding;0.00414530903466287!GO:0006740;NADPH regeneration;0.00416224432458428!GO:0006098;pentose-phosphate shunt;0.00416224432458428!GO:0043681;protein import into mitochondrion;0.00430955440038957!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00439852823919675!GO:0006518;peptide metabolic process;0.00457338992563981!GO:0000096;sulfur amino acid metabolic process;0.00467111936599688!GO:0000287;magnesium ion binding;0.00469886393830105!GO:0022406;membrane docking;0.00504238877219885!GO:0048278;vesicle docking;0.00504238877219885!GO:0019222;regulation of metabolic process;0.00515138079730096!GO:0051252;regulation of RNA metabolic process;0.00546322544612!GO:0006414;translational elongation;0.00562813878439806!GO:0042613;MHC class II protein complex;0.00568255574951032!GO:0005667;transcription factor complex;0.00570430526049111!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00588767336249359!GO:0006635;fatty acid beta-oxidation;0.00599908899650284!GO:0046479;glycosphingolipid catabolic process;0.00600624893681517!GO:0042802;identical protein binding;0.00600624893681517!GO:0019362;pyridine nucleotide metabolic process;0.00604655614109211!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00616642275241599!GO:0016791;phosphoric monoester hydrolase activity;0.00622086805266194!GO:0000209;protein polyubiquitination;0.00628631055875942!GO:0004004;ATP-dependent RNA helicase activity;0.00641678008908953!GO:0030134;ER to Golgi transport vesicle;0.0065044136303414!GO:0003690;double-stranded DNA binding;0.00653938261837831!GO:0006333;chromatin assembly or disassembly;0.00667602261261656!GO:0006383;transcription from RNA polymerase III promoter;0.00694948903695849!GO:0032318;regulation of Ras GTPase activity;0.00709690834536447!GO:0030140;trans-Golgi network transport vesicle;0.00714140329599591!GO:0048500;signal recognition particle;0.00716069505985642!GO:0006904;vesicle docking during exocytosis;0.00717788924211382!GO:0030027;lamellipodium;0.00722259124309553!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00736239527604668!GO:0015002;heme-copper terminal oxidase activity;0.00736239527604668!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00736239527604668!GO:0004129;cytochrome-c oxidase activity;0.00736239527604668!GO:0065007;biological regulation;0.00744089734207862!GO:0030137;COPI-coated vesicle;0.00749343785596947!GO:0051336;regulation of hydrolase activity;0.00752958778784127!GO:0000314;organellar small ribosomal subunit;0.00760042247896134!GO:0005763;mitochondrial small ribosomal subunit;0.00760042247896134!GO:0006778;porphyrin metabolic process;0.00803711733467288!GO:0033013;tetrapyrrole metabolic process;0.00803711733467288!GO:0006509;membrane protein ectodomain proteolysis;0.00813735581258265!GO:0033619;membrane protein proteolysis;0.00813735581258265!GO:0030663;COPI coated vesicle membrane;0.00826465951007416!GO:0030126;COPI vesicle coat;0.00826465951007416!GO:0030127;COPII vesicle coat;0.00862497718072643!GO:0012507;ER to Golgi transport vesicle membrane;0.00862497718072643!GO:0030029;actin filament-based process;0.00867557957780908!GO:0015923;mannosidase activity;0.00888359512594296!GO:0046983;protein dimerization activity;0.00890166068076002!GO:0016408;C-acyltransferase activity;0.00913874826752612!GO:0015631;tubulin binding;0.00919591161583438!GO:0006626;protein targeting to mitochondrion;0.00919591161583438!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00944295669679439!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00957749816564318!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00957749816564318!GO:0017166;vinculin binding;0.00965462065618621!GO:0006405;RNA export from nucleus;0.00968436155763532!GO:0031901;early endosome membrane;0.00986621635330991!GO:0030145;manganese ion binding;0.0098664568181646!GO:0022415;viral reproductive process;0.00995547910373051!GO:0006465;signal peptide processing;0.00997491031418152!GO:0042168;heme metabolic process;0.0100065796367193!GO:0044427;chromosomal part;0.0100915702170861!GO:0043300;regulation of leukocyte degranulation;0.0102400626344856!GO:0030125;clathrin vesicle coat;0.0103080357094795!GO:0030665;clathrin coated vesicle membrane;0.0103080357094795!GO:0007050;cell cycle arrest;0.0104402075899027!GO:0003725;double-stranded RNA binding;0.0104834262743604!GO:0008139;nuclear localization sequence binding;0.0105400163122506!GO:0051287;NAD binding;0.0105544383450998!GO:0006665;sphingolipid metabolic process;0.0105794503630784!GO:0006007;glucose catabolic process;0.0108110368136913!GO:0000785;chromatin;0.0109694920569185!GO:0030984;kininogen binding;0.0112507158176826!GO:0004213;cathepsin B activity;0.0112507158176826!GO:0003711;transcription elongation regulator activity;0.0114707905471083!GO:0051540;metal cluster binding;0.011947201519971!GO:0051536;iron-sulfur cluster binding;0.011947201519971!GO:0009892;negative regulation of metabolic process;0.011947201519971!GO:0043304;regulation of mast cell degranulation;0.011947201519971!GO:0006516;glycoprotein catabolic process;0.0120462792070681!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.01212643430648!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0124656518038017!GO:0045047;protein targeting to ER;0.0124656518038017!GO:0006458;'de novo' protein folding;0.0129660178238137!GO:0051084;'de novo' posttranslational protein folding;0.0129660178238137!GO:0006260;DNA replication;0.0129660178238137!GO:0016788;hydrolase activity, acting on ester bonds;0.0130748764758962!GO:0016311;dephosphorylation;0.0131593894391873!GO:0004197;cysteine-type endopeptidase activity;0.0131593894391873!GO:0030132;clathrin coat of coated pit;0.0133095251600048!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.0134883923796199!GO:0002819;regulation of adaptive immune response;0.0134883923796199!GO:0006807;nitrogen compound metabolic process;0.0135117247731818!GO:0004722;protein serine/threonine phosphatase activity;0.0135430317988976!GO:0032428;beta-N-acetylgalactosaminidase activity;0.0135800630227294!GO:0030290;sphingolipid activator protein activity;0.0135800630227294!GO:0051539;4 iron, 4 sulfur cluster binding;0.0139347528779869!GO:0005777;peroxisome;0.0144687118856354!GO:0042579;microbody;0.0144687118856354!GO:0016481;negative regulation of transcription;0.0146469334713311!GO:0030119;AP-type membrane coat adaptor complex;0.014701878688244!GO:0008637;apoptotic mitochondrial changes;0.0148336153962998!GO:0006611;protein export from nucleus;0.015162356515854!GO:0006979;response to oxidative stress;0.0151692966809841!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0157187136169469!GO:0048037;cofactor binding;0.0158001984553079!GO:0004185;serine carboxypeptidase activity;0.0161890357415866!GO:0047485;protein N-terminus binding;0.0169222005883822!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0169602098918648!GO:0000339;RNA cap binding;0.0172419489256292!GO:0006689;ganglioside catabolic process;0.017474991179574!GO:0031301;integral to organelle membrane;0.0175095465424391!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0175441480753822!GO:0006622;protein targeting to lysosome;0.0175912908168919!GO:0000059;protein import into nucleus, docking;0.0176468981365923!GO:0030131;clathrin adaptor complex;0.0180312907288934!GO:0048002;antigen processing and presentation of peptide antigen;0.0181575014818616!GO:0043488;regulation of mRNA stability;0.0186349042326256!GO:0043487;regulation of RNA stability;0.0186349042326256!GO:0004214;dipeptidyl-peptidase I activity;0.0190402334401584!GO:0004674;protein serine/threonine kinase activity;0.0196392251056208!GO:0016251;general RNA polymerase II transcription factor activity;0.0201287390260853!GO:0065004;protein-DNA complex assembly;0.0202646240553943!GO:0031625;ubiquitin protein ligase binding;0.0203311645655742!GO:0006302;double-strand break repair;0.0218808535993597!GO:0009112;nucleobase metabolic process;0.0218919452107412!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0221392612999845!GO:0005869;dynactin complex;0.0221760009716619!GO:0006631;fatty acid metabolic process;0.0227231007519402!GO:0004300;enoyl-CoA hydratase activity;0.0232479059915441!GO:0004428;inositol or phosphatidylinositol kinase activity;0.023540220632234!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0237462978330445!GO:0006520;amino acid metabolic process;0.0238395260886533!GO:0048468;cell development;0.0241460667036876!GO:0005684;U2-dependent spliceosome;0.0248419314937859!GO:0035035;histone acetyltransferase binding;0.025194631013527!GO:0060090;molecular adaptor activity;0.0252473798882505!GO:0008312;7S RNA binding;0.0257776918331197!GO:0051087;chaperone binding;0.0259072574764333!GO:0016126;sterol biosynthetic process;0.0261726447085557!GO:0030503;regulation of cell redox homeostasis;0.0261785051920115!GO:0008017;microtubule binding;0.0262646273457815!GO:0030508;thiol-disulfide exchange intermediate activity;0.0266263067935825!GO:0051101;regulation of DNA binding;0.0268301057966126!GO:0005637;nuclear inner membrane;0.0268301057966126!GO:0006497;protein amino acid lipidation;0.0269916478366875!GO:0043022;ribosome binding;0.0271341503525183!GO:0006633;fatty acid biosynthetic process;0.0271376698272371!GO:0046822;regulation of nucleocytoplasmic transport;0.0272280979955197!GO:0042158;lipoprotein biosynthetic process;0.0274579217524153!GO:0031124;mRNA 3'-end processing;0.0275891791028512!GO:0003899;DNA-directed RNA polymerase activity;0.0278133589964683!GO:0044438;microbody part;0.0278409676655218!GO:0044439;peroxisomal part;0.0278409676655218!GO:0042611;MHC protein complex;0.0279470736496729!GO:0050811;GABA receptor binding;0.0279470736496729!GO:0051881;regulation of mitochondrial membrane potential;0.0282025541300316!GO:0004576;oligosaccharyl transferase activity;0.0282426846043785!GO:0015630;microtubule cytoskeleton;0.0282537397419465!GO:0005057;receptor signaling protein activity;0.0284995079019899!GO:0046466;membrane lipid catabolic process;0.0289981603902929!GO:0008033;tRNA processing;0.0292659020260569!GO:0012506;vesicle membrane;0.0296350085452118!GO:0004563;beta-N-acetylhexosaminidase activity;0.0297401783074492!GO:0005791;rough endoplasmic reticulum;0.0302174113520611!GO:0032763;regulation of mast cell cytokine production;0.0306794295988701!GO:0032762;mast cell cytokine production;0.0306794295988701!GO:0045309;protein phosphorylated amino acid binding;0.0307162754055147!GO:0006006;glucose metabolic process;0.0311720332562397!GO:0051098;regulation of binding;0.0313314228342578!GO:0008250;oligosaccharyl transferase complex;0.0313888220892619!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0318161476532517!GO:0030099;myeloid cell differentiation;0.0318161476532517!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0318161476532517!GO:0019904;protein domain specific binding;0.0318161476532517!GO:0033367;protein localization in mast cell secretory granule;0.0318161476532517!GO:0033365;protein localization in organelle;0.0318161476532517!GO:0033371;T cell secretory granule organization and biogenesis;0.0318161476532517!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0318161476532517!GO:0033375;protease localization in T cell secretory granule;0.0318161476532517!GO:0042629;mast cell granule;0.0318161476532517!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0318161476532517!GO:0033364;mast cell secretory granule organization and biogenesis;0.0318161476532517!GO:0033380;granzyme B localization in T cell secretory granule;0.0318161476532517!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0318161476532517!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0318161476532517!GO:0033368;protease localization in mast cell secretory granule;0.0318161476532517!GO:0033366;protein localization in secretory granule;0.0318161476532517!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0318161476532517!GO:0033374;protein localization in T cell secretory granule;0.0318161476532517!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.031902818694678!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.031902818694678!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.031902818694678!GO:0006739;NADP metabolic process;0.0321232897567908!GO:0051056;regulation of small GTPase mediated signal transduction;0.0321804089628748!GO:0006013;mannose metabolic process;0.0322041059767887!GO:0000049;tRNA binding;0.0322084015544169!GO:0008624;induction of apoptosis by extracellular signals;0.0322084015544169!GO:0006289;nucleotide-excision repair;0.0323946732276359!GO:0005784;translocon complex;0.0327318999235831!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0328387430761776!GO:0004192;cathepsin D activity;0.0334373526292136!GO:0044452;nucleolar part;0.0334653965605827!GO:0015035;protein disulfide oxidoreductase activity;0.0334653965605827!GO:0032787;monocarboxylic acid metabolic process;0.0335541623316863!GO:0051085;chaperone cofactor-dependent protein folding;0.0335541623316863!GO:0006779;porphyrin biosynthetic process;0.0335541623316863!GO:0033014;tetrapyrrole biosynthetic process;0.0335541623316863!GO:0016363;nuclear matrix;0.0337415464329337!GO:0016301;kinase activity;0.0341770119741505!GO:0046456;icosanoid biosynthetic process;0.0343423062819477!GO:0002376;immune system process;0.0343549871872544!GO:0000118;histone deacetylase complex;0.0343549871872544!GO:0006914;autophagy;0.0345381476540112!GO:0006066;alcohol metabolic process;0.0345534592328017!GO:0046426;negative regulation of JAK-STAT cascade;0.0347561783809782!GO:0008629;induction of apoptosis by intracellular signals;0.0348565507483555!GO:0033673;negative regulation of kinase activity;0.0350343205925139!GO:0006469;negative regulation of protein kinase activity;0.0350343205925139!GO:0006661;phosphatidylinositol biosynthetic process;0.0357691725309431!GO:0046578;regulation of Ras protein signal transduction;0.0358480888119317!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0359252917819616!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0359395393729832!GO:0042987;amyloid precursor protein catabolic process;0.0364172305070921!GO:0043506;regulation of JNK activity;0.0365925443929114!GO:0009308;amine metabolic process;0.0366544693536228!GO:0016790;thiolester hydrolase activity;0.0367440137450419!GO:0046164;alcohol catabolic process;0.0370700827584781!GO:0006595;polyamine metabolic process;0.0371998945710764!GO:0035258;steroid hormone receptor binding;0.0374009907774653!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0381467783992244!GO:0010257;NADH dehydrogenase complex assembly;0.0381467783992244!GO:0033108;mitochondrial respiratory chain complex assembly;0.0381467783992244!GO:0051219;phosphoprotein binding;0.0384689703757178!GO:0006310;DNA recombination;0.0386425484372928!GO:0006352;transcription initiation;0.0389619159706256!GO:0046488;phosphatidylinositol metabolic process;0.0391261297230084!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.039197005339384!GO:0000278;mitotic cell cycle;0.039197005339384!GO:0031903;microbody membrane;0.0392614681469024!GO:0005778;peroxisomal membrane;0.0392614681469024!GO:0030041;actin filament polymerization;0.039432307412174!GO:0015929;hexosaminidase activity;0.0395742978586572!GO:0043306;positive regulation of mast cell degranulation;0.0404658948582585!GO:0045921;positive regulation of exocytosis;0.0404658948582585!GO:0043302;positive regulation of leukocyte degranulation;0.0404658948582585!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0405537716910617!GO:0001891;phagocytic cup;0.040830722821673!GO:0019863;IgE binding;0.0408915237018486!GO:0008601;protein phosphatase type 2A regulator activity;0.0411407309808094!GO:0004448;isocitrate dehydrogenase activity;0.0417156546313795!GO:0005832;chaperonin-containing T-complex;0.0417241255235837!GO:0000303;response to superoxide;0.0417446258970983!GO:0030258;lipid modification;0.0421757317187025!GO:0006783;heme biosynthetic process;0.0424425421532163!GO:0004559;alpha-mannosidase activity;0.0427053213311575!GO:0005758;mitochondrial intermembrane space;0.0431714400362776!GO:0007030;Golgi organization and biogenesis;0.043675949497693!GO:0006470;protein amino acid dephosphorylation;0.0443032529815057!GO:0004553;hydrolase activity, hydrolyzing O-glycosyl compounds;0.044376826485055!GO:0046365;monosaccharide catabolic process;0.0455064160795486!GO:0006354;RNA elongation;0.0455064160795486!GO:0009110;vitamin biosynthetic process;0.0458411130171871!GO:0044275;cellular carbohydrate catabolic process;0.0458750527670824!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0458750527670824!GO:0004721;phosphoprotein phosphatase activity;0.0458838607952435!GO:0016272;prefoldin complex;0.0462082517957541!GO:0016798;hydrolase activity, acting on glycosyl bonds;0.0463768224030927!GO:0030911;TPR domain binding;0.0475130249358719!GO:0046500;S-adenosylmethionine metabolic process;0.0476337588557129!GO:0001784;phosphotyrosine binding;0.0476379473884397!GO:0006790;sulfur metabolic process;0.0479467320281369!GO:0001573;ganglioside metabolic process;0.0479467320281369!GO:0042253;granulocyte macrophage colony-stimulating factor biosynthetic process;0.0480216745478201!GO:0032604;granulocyte macrophage colony-stimulating factor production;0.0480216745478201!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.048234624039136!GO:0030518;steroid hormone receptor signaling pathway;0.0483012401227669!GO:0006376;mRNA splice site selection;0.0485495814234577!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0485495814234577!GO:0008415;acyltransferase activity;0.0492794873939477!GO:0008538;proteasome activator activity;0.0496831666262414 | |||
|sample_id=11227 | |sample_id=11227 | ||
|sample_note= | |sample_note= | ||
Line 76: | Line 106: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=TLX2:2.42905157399;FOXP3:2.19919098602;SREBF1,2:1.98257064089;ALX1:1.64783035022;STAT1,3:1.35447147848;NKX2-2,8:1.30050096021;SPI1:1.20150641088;NR6A1:1.18809693347;NFE2L2:1.10158960343;ESRRA:1.10037007521;EN1,2:0.974323731584;ESR1:0.963974128534;SPIB:0.963838909499;ARID5B:0.940836892667;IRF7:0.924062885646;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.903549587152;ELF1,2,4:0.839050255176;NANOG{mouse}:0.736334475814;ETS1,2:0.728538359403;STAT2,4,6:0.712338982228;FOXQ1:0.705013536282;DMAP1_NCOR{1,2}_SMARC:0.657259611474;PAX5:0.644088873426;IRF1,2:0.622159272088;HMGA1,2:0.618396681729;RORA:0.57398263714;VSX1,2:0.571392552307;TFCP2:0.498395826881;FOXA2:0.459014829995;TGIF1:0.450792903727;FOXD3:0.448514091;XBP1:0.416030673934;MYOD1:0.404899032755;GLI1..3:0.393327617044;PPARG:0.382075540085;NKX3-2:0.368624009939;NFIL3:0.36438024374;STAT5{A,B}:0.335250349169;FOXP1:0.311157686113;AR:0.300358084561;PAX2:0.292989283993;IKZF2:0.28859457944;CDX1,2,4:0.285595618371;EP300:0.278121844594;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.240187731005;ZBTB16:0.225471927166;OCT4_SOX2{dimer}:0.213134188814;CUX2:0.191714209884;RUNX1..3:0.191218141623;GATA6:0.184392965211;FOSL2:0.165522906162;HSF1,2:0.164414904896;PDX1:0.155668186209;NR5A1,2:0.139205557296;HLF:0.122102128554;SPZ1:0.10823543139;RFX2..5_RFXANK_RFXAP:0.104069015395;ATF2:0.0947292995903;NKX2-3_NKX2-5:0.0784570199452;FOXN1:0.0781834855027;HES1:0.0679316670172;NFE2:0.0369417917253;EGR1..3:0.029634940625;RXRA_VDR{dimer}:-0.00111561937574;ZNF148:-0.0129127682892;NFKB1_REL_RELA:-0.0172825000056;MYFfamily:-0.0254784010103;NKX6-1,2:-0.0288993646837;PAX6:-0.0292635002548;LMO2:-0.0453517292497;HNF4A_NR2F1,2:-0.0608951608276;FOX{D1,D2}:-0.0673708902892;POU6F1:-0.074508894796;ATF5_CREB3:-0.0806663376385;HOXA9_MEIS1:-0.0882713735158;POU5F1:-0.0920289824695;NHLH1,2:-0.0988655873497;PRRX1,2:-0.114062815845;SP1:-0.116823025507;MYBL2:-0.119132197313;XCPE1{core}:-0.130246312541;ZFP161:-0.131431819109;TFAP4:-0.139219672728;HAND1,2:-0.143897829826;FOX{F1,F2,J1}:-0.148631912274;PAX8:-0.158907508137;POU1F1:-0.161513348455;SMAD1..7,9:-0.167302022927;BPTF:-0.167319068268;CRX:-0.187299134818;MYB:-0.192590369852;YY1:-0.199283282667;SOX2:-0.201134558484;GZF1:-0.211939693958;ZEB1:-0.221992733306;NR3C1:-0.227221370543;HNF1A:-0.245108014923;MTF1:-0.248730801688;HOX{A6,A7,B6,B7}:-0.265131141001;NFE2L1:-0.269665049989;SRF:-0.282573208846;MAFB:-0.287357802201;PAX3,7:-0.301608128712;ELK1,4_GABP{A,B1}:-0.309655324471;HBP1_HMGB_SSRP1_UBTF:-0.319408889366;PAX1,9:-0.324530888405;MEF2{A,B,C,D}:-0.344244289006;POU3F1..4:-0.351099688172;SOX5:-0.356371665176;FOS_FOS{B,L1}_JUN{B,D}:-0.361272381398;LHX3,4:-0.362692289283;TFAP2B:-0.370186662049;ONECUT1,2:-0.373244677695;MTE{core}:-0.389689526432;TFAP2{A,C}:-0.394936018636;BACH2:-0.406785623779;FOXO1,3,4:-0.429332399603;HOX{A4,D4}:-0.445650908321;HIC1:-0.450894734892;CEBPA,B_DDIT3:-0.456024442878;SNAI1..3:-0.483390367891;GFI1B:-0.507646131202;TAL1_TCF{3,4,12}:-0.510069379162;NRF1:-0.515554633568;GTF2A1,2:-0.56036306019;PRDM1:-0.581572581525;NANOG:-0.609996581444;GCM1,2:-0.615940144719;ZBTB6:-0.616393687359;AHR_ARNT_ARNT2:-0.649056844911;NFIX:-0.65377084208;MED-1{core}:-0.662130758027;MAZ:-0.666004367797;ZNF143:-0.667118965765;FOX{I1,J2}:-0.684913775539;TBP:-0.700140165199;ATF4:-0.704471401157;EVI1:-0.706885388281;EBF1:-0.707482592551;AIRE:-0.733373977102;KLF4:-0.743680653663;UFEwm:-0.750007128434;CDC5L:-0.772111199564;REST:-0.773217049123;NFY{A,B,C}:-0.77803549992;FOXM1:-0.798679647985;ADNP_IRX_SIX_ZHX:-0.809836230884;PAX4:-0.824930824334;bHLH_family:-0.829632916635;PITX1..3:-0.832408114136;TFDP1:-0.874972499834;TOPORS:-0.895572475253;TP53:-0.899453697118;HIF1A:-0.91318138551;TEAD1:-0.919416399451;GTF2I:-0.949472639664;NR1H4:-0.959938249846;ZNF423:-0.968331833258;GATA4:-0.972193488998;SOX17:-0.975387932599;TEF:-0.976608548291;JUN:-0.976664062378;GFI1:-0.982786214054;RREB1:-1.00837098826;FOXL1:-1.09192060496;POU2F1..3:-1.09448166621;BREu{core}:-1.11137078001;TLX1..3_NFIC{dimer}:-1.11393140738;ATF6:-1.13025192124;ALX4:-1.13211728517;IKZF1:-1.13266280313;NKX3-1:-1.1451067359;E2F1..5:-1.15767091644;HMX1:-1.16515476868;SOX{8,9,10}:-1.18000853223;ZNF384:-1.19302966715;DBP:-1.20667454673;T:-1.24504535026;CREB1:-1.28010229065;PATZ1:-1.31004290146;RXR{A,B,G}:-1.33199084054;NFATC1..3:-1.39421165849;RFX1:-1.44999135962;LEF1_TCF7_TCF7L1,2:-1.45097819166;ZIC1..3:-1.46536241264;HOX{A5,B5}:-1.51804962583;PBX1:-1.53589400711;ZNF238:-1.58302468914;MZF1:-1.7313414347;TBX4,5:-1.96646793899;RBPJ:-2.01683654105;NKX2-1,4:-2.31050365385 | |top_motifs=TLX2:2.42905157399;FOXP3:2.19919098602;SREBF1,2:1.98257064089;ALX1:1.64783035022;STAT1,3:1.35447147848;NKX2-2,8:1.30050096021;SPI1:1.20150641088;NR6A1:1.18809693347;NFE2L2:1.10158960343;ESRRA:1.10037007521;EN1,2:0.974323731584;ESR1:0.963974128534;SPIB:0.963838909499;ARID5B:0.940836892667;IRF7:0.924062885646;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.903549587152;ELF1,2,4:0.839050255176;NANOG{mouse}:0.736334475814;ETS1,2:0.728538359403;STAT2,4,6:0.712338982228;FOXQ1:0.705013536282;DMAP1_NCOR{1,2}_SMARC:0.657259611474;PAX5:0.644088873426;IRF1,2:0.622159272088;HMGA1,2:0.618396681729;RORA:0.57398263714;VSX1,2:0.571392552307;TFCP2:0.498395826881;FOXA2:0.459014829995;TGIF1:0.450792903727;FOXD3:0.448514091;XBP1:0.416030673934;MYOD1:0.404899032755;GLI1..3:0.393327617044;PPARG:0.382075540085;NKX3-2:0.368624009939;NFIL3:0.36438024374;STAT5{A,B}:0.335250349169;FOXP1:0.311157686113;AR:0.300358084561;PAX2:0.292989283993;IKZF2:0.28859457944;CDX1,2,4:0.285595618371;EP300:0.278121844594;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.240187731005;ZBTB16:0.225471927166;OCT4_SOX2{dimer}:0.213134188814;CUX2:0.191714209884;RUNX1..3:0.191218141623;GATA6:0.184392965211;FOSL2:0.165522906162;HSF1,2:0.164414904896;PDX1:0.155668186209;NR5A1,2:0.139205557296;HLF:0.122102128554;SPZ1:0.10823543139;RFX2..5_RFXANK_RFXAP:0.104069015395;ATF2:0.0947292995903;NKX2-3_NKX2-5:0.0784570199452;FOXN1:0.0781834855027;HES1:0.0679316670172;NFE2:0.0369417917253;EGR1..3:0.029634940625;RXRA_VDR{dimer}:-0.00111561937574;ZNF148:-0.0129127682892;NFKB1_REL_RELA:-0.0172825000056;MYFfamily:-0.0254784010103;NKX6-1,2:-0.0288993646837;PAX6:-0.0292635002548;LMO2:-0.0453517292497;HNF4A_NR2F1,2:-0.0608951608276;FOX{D1,D2}:-0.0673708902892;POU6F1:-0.074508894796;ATF5_CREB3:-0.0806663376385;HOXA9_MEIS1:-0.0882713735158;POU5F1:-0.0920289824695;NHLH1,2:-0.0988655873497;PRRX1,2:-0.114062815845;SP1:-0.116823025507;MYBL2:-0.119132197313;XCPE1{core}:-0.130246312541;ZFP161:-0.131431819109;TFAP4:-0.139219672728;HAND1,2:-0.143897829826;FOX{F1,F2,J1}:-0.148631912274;PAX8:-0.158907508137;POU1F1:-0.161513348455;SMAD1..7,9:-0.167302022927;BPTF:-0.167319068268;CRX:-0.187299134818;MYB:-0.192590369852;YY1:-0.199283282667;SOX2:-0.201134558484;GZF1:-0.211939693958;ZEB1:-0.221992733306;NR3C1:-0.227221370543;HNF1A:-0.245108014923;MTF1:-0.248730801688;HOX{A6,A7,B6,B7}:-0.265131141001;NFE2L1:-0.269665049989;SRF:-0.282573208846;MAFB:-0.287357802201;PAX3,7:-0.301608128712;ELK1,4_GABP{A,B1}:-0.309655324471;HBP1_HMGB_SSRP1_UBTF:-0.319408889366;PAX1,9:-0.324530888405;MEF2{A,B,C,D}:-0.344244289006;POU3F1..4:-0.351099688172;SOX5:-0.356371665176;FOS_FOS{B,L1}_JUN{B,D}:-0.361272381398;LHX3,4:-0.362692289283;TFAP2B:-0.370186662049;ONECUT1,2:-0.373244677695;MTE{core}:-0.389689526432;TFAP2{A,C}:-0.394936018636;BACH2:-0.406785623779;FOXO1,3,4:-0.429332399603;HOX{A4,D4}:-0.445650908321;HIC1:-0.450894734892;CEBPA,B_DDIT3:-0.456024442878;SNAI1..3:-0.483390367891;GFI1B:-0.507646131202;TAL1_TCF{3,4,12}:-0.510069379162;NRF1:-0.515554633568;GTF2A1,2:-0.56036306019;PRDM1:-0.581572581525;NANOG:-0.609996581444;GCM1,2:-0.615940144719;ZBTB6:-0.616393687359;AHR_ARNT_ARNT2:-0.649056844911;NFIX:-0.65377084208;MED-1{core}:-0.662130758027;MAZ:-0.666004367797;ZNF143:-0.667118965765;FOX{I1,J2}:-0.684913775539;TBP:-0.700140165199;ATF4:-0.704471401157;EVI1:-0.706885388281;EBF1:-0.707482592551;AIRE:-0.733373977102;KLF4:-0.743680653663;UFEwm:-0.750007128434;CDC5L:-0.772111199564;REST:-0.773217049123;NFY{A,B,C}:-0.77803549992;FOXM1:-0.798679647985;ADNP_IRX_SIX_ZHX:-0.809836230884;PAX4:-0.824930824334;bHLH_family:-0.829632916635;PITX1..3:-0.832408114136;TFDP1:-0.874972499834;TOPORS:-0.895572475253;TP53:-0.899453697118;HIF1A:-0.91318138551;TEAD1:-0.919416399451;GTF2I:-0.949472639664;NR1H4:-0.959938249846;ZNF423:-0.968331833258;GATA4:-0.972193488998;SOX17:-0.975387932599;TEF:-0.976608548291;JUN:-0.976664062378;GFI1:-0.982786214054;RREB1:-1.00837098826;FOXL1:-1.09192060496;POU2F1..3:-1.09448166621;BREu{core}:-1.11137078001;TLX1..3_NFIC{dimer}:-1.11393140738;ATF6:-1.13025192124;ALX4:-1.13211728517;IKZF1:-1.13266280313;NKX3-1:-1.1451067359;E2F1..5:-1.15767091644;HMX1:-1.16515476868;SOX{8,9,10}:-1.18000853223;ZNF384:-1.19302966715;DBP:-1.20667454673;T:-1.24504535026;CREB1:-1.28010229065;PATZ1:-1.31004290146;RXR{A,B,G}:-1.33199084054;NFATC1..3:-1.39421165849;RFX1:-1.44999135962;LEF1_TCF7_TCF7L1,2:-1.45097819166;ZIC1..3:-1.46536241264;HOX{A5,B5}:-1.51804962583;PBX1:-1.53589400711;ZNF238:-1.58302468914;MZF1:-1.7313414347;TBX4,5:-1.96646793899;RBPJ:-2.01683654105;NKX2-1,4:-2.31050365385 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11227-116C3;search_select_hide=table117:FF:11227-116C3 | |||
}} | }} |
Latest revision as of 16:25, 3 June 2020
Name: | Dendritic Cells - monocyte immature derived, donor1 |
---|---|
Species: | Human (Homo sapiens) |
Library ID: | CNhs10855,CNhs11062 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10855
library id: CNhs11062
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10855
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.017 |
10 | 10 | 0.0249 |
100 | 100 | 0.966 |
101 | 101 | 0.197 |
102 | 102 | 0.58 |
103 | 103 | 0.0877 |
104 | 104 | 0.377 |
105 | 105 | 0.899 |
106 | 106 | 0.0163 |
107 | 107 | 0.298 |
108 | 108 | 0.885 |
109 | 109 | 0.0155 |
11 | 11 | 0.0712 |
110 | 110 | 0.188 |
111 | 111 | 0.0111 |
112 | 112 | 0.0322 |
113 | 113 | 0.813 |
114 | 114 | 8.74896e-4 |
115 | 115 | 0.0659 |
116 | 116 | 0.465 |
117 | 117 | 0.0426 |
118 | 118 | 0.479 |
119 | 119 | 0.025 |
12 | 12 | 0.579 |
120 | 120 | 0.347 |
121 | 121 | 0.765 |
122 | 122 | 0.32 |
123 | 123 | 0.313 |
124 | 124 | 0.396 |
125 | 125 | 0.536 |
126 | 126 | 0.327 |
127 | 127 | 0.227 |
128 | 128 | 0.0382 |
129 | 129 | 0.758 |
13 | 13 | 0.0938 |
130 | 130 | 0.885 |
131 | 131 | 0.993 |
132 | 132 | 0.746 |
133 | 133 | 0.817 |
134 | 134 | 0.868 |
135 | 135 | 0.0142 |
136 | 136 | 0.384 |
137 | 137 | 0.0481 |
138 | 138 | 0.504 |
139 | 139 | 0.0088 |
14 | 14 | 0.303 |
140 | 140 | 0.0957 |
141 | 141 | 0.781 |
142 | 142 | 0.145 |
143 | 143 | 0.137 |
144 | 144 | 0.828 |
145 | 145 | 0.403 |
146 | 146 | 0.568 |
147 | 147 | 0.383 |
148 | 148 | 0.0154 |
149 | 149 | 0.321 |
15 | 15 | 0.112 |
150 | 150 | 0.495 |
151 | 151 | 0.477 |
152 | 152 | 0.0844 |
153 | 153 | 0.213 |
154 | 154 | 0.964 |
155 | 155 | 0.233 |
156 | 156 | 0.947 |
157 | 157 | 0.789 |
158 | 158 | 0.98 |
159 | 159 | 0.186 |
16 | 16 | 0.265 |
160 | 160 | 0.78 |
161 | 161 | 0.158 |
162 | 162 | 0.58 |
163 | 163 | 0.434 |
164 | 164 | 0.0976 |
165 | 165 | 0.464 |
166 | 166 | 0.481 |
167 | 167 | 0.384 |
168 | 168 | 0.816 |
169 | 169 | 0.00573 |
17 | 17 | 0.184 |
18 | 18 | 0.336 |
19 | 19 | 0.235 |
2 | 2 | 0.808 |
20 | 20 | 0.864 |
21 | 21 | 0.273 |
22 | 22 | 0.176 |
23 | 23 | 0.206 |
24 | 24 | 0.031 |
25 | 25 | 0.619 |
26 | 26 | 0.173 |
27 | 27 | 0.235 |
28 | 28 | 0.72 |
29 | 29 | 0.41 |
3 | 3 | 0.022 |
30 | 30 | 0.769 |
31 | 31 | 0.627 |
32 | 32 | 0.885 |
33 | 33 | 0.2 |
34 | 34 | 0.402 |
35 | 35 | 0.79 |
36 | 36 | 0.158 |
37 | 37 | 0.078 |
38 | 38 | 0.216 |
39 | 39 | 0.638 |
4 | 4 | 0.768 |
40 | 40 | 0.146 |
41 | 41 | 0.46 |
42 | 42 | 0.361 |
43 | 43 | 0.0902 |
44 | 44 | 0.0112 |
45 | 45 | 0.866 |
46 | 46 | 0.191 |
47 | 47 | 0.155 |
48 | 48 | 0.207 |
49 | 49 | 0.176 |
5 | 5 | 0.266 |
50 | 50 | 0.935 |
51 | 51 | 0.649 |
52 | 52 | 0.162 |
53 | 53 | 0.504 |
54 | 54 | 0.35 |
55 | 55 | 0.0698 |
56 | 56 | 0.668 |
57 | 57 | 0.438 |
58 | 58 | 0.135 |
59 | 59 | 0.188 |
6 | 6 | 0.738 |
60 | 60 | 0.0612 |
61 | 61 | 0.334 |
62 | 62 | 0.0831 |
63 | 63 | 0.436 |
64 | 64 | 0.297 |
65 | 65 | 0.152 |
66 | 66 | 0.973 |
67 | 67 | 0.292 |
68 | 68 | 0.949 |
69 | 69 | 0.603 |
7 | 7 | 0.21 |
70 | 70 | 0.0362 |
71 | 71 | 0.0767 |
72 | 72 | 0.234 |
73 | 73 | 0.0113 |
74 | 74 | 0.511 |
75 | 75 | 0.0335 |
76 | 76 | 0.35 |
77 | 77 | 0.28 |
78 | 78 | 0.0125 |
79 | 79 | 0.884 |
8 | 8 | 0.111 |
80 | 80 | 0.382 |
81 | 81 | 0.129 |
82 | 82 | 0.124 |
83 | 83 | 0.643 |
84 | 84 | 0.468 |
85 | 85 | 0.0468 |
86 | 86 | 0.0843 |
87 | 87 | 0.0719 |
88 | 88 | 0.205 |
89 | 89 | 0.0858 |
9 | 9 | 0.376 |
90 | 90 | 0.0155 |
91 | 91 | 0.709 |
92 | 92 | 0.113 |
93 | 93 | 0.775 |
94 | 94 | 0.0433 |
95 | 95 | 0.307 |
96 | 96 | 0.123 |
97 | 97 | 0.946 |
98 | 98 | 0.144 |
99 | 99 | 0.982 |
library id: CNhs11062
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0152 |
10 | 10 | 0.0238 |
100 | 100 | 0.923 |
101 | 101 | 0.203 |
102 | 102 | 0.595 |
103 | 103 | 0.0354 |
104 | 104 | 0.277 |
105 | 105 | 0.999 |
106 | 106 | 0.0159 |
107 | 107 | 0.242 |
108 | 108 | 0.898 |
109 | 109 | 0.0295 |
11 | 11 | 0.11 |
110 | 110 | 0.233 |
111 | 111 | 0.0166 |
112 | 112 | 0.0292 |
113 | 113 | 0.695 |
114 | 114 | 0.0025 |
115 | 115 | 0.106 |
116 | 116 | 0.547 |
117 | 117 | 0.0472 |
118 | 118 | 0.621 |
119 | 119 | 0.0243 |
12 | 12 | 0.537 |
120 | 120 | 0.42 |
121 | 121 | 0.78 |
122 | 122 | 0.245 |
123 | 123 | 0.244 |
124 | 124 | 0.413 |
125 | 125 | 0.548 |
126 | 126 | 0.388 |
127 | 127 | 0.135 |
128 | 128 | 0.0694 |
129 | 129 | 0.522 |
13 | 13 | 0.1 |
130 | 130 | 0.854 |
131 | 131 | 0.978 |
132 | 132 | 0.823 |
133 | 133 | 0.974 |
134 | 134 | 0.72 |
135 | 135 | 0.00336 |
136 | 136 | 0.34 |
137 | 137 | 0.0313 |
138 | 138 | 0.475 |
139 | 139 | 0.0202 |
14 | 14 | 0.312 |
140 | 140 | 0.101 |
141 | 141 | 0.86 |
142 | 142 | 0.153 |
143 | 143 | 0.0653 |
144 | 144 | 0.896 |
145 | 145 | 0.404 |
146 | 146 | 0.651 |
147 | 147 | 0.233 |
148 | 148 | 0.0108 |
149 | 149 | 0.36 |
15 | 15 | 0.157 |
150 | 150 | 0.485 |
151 | 151 | 0.569 |
152 | 152 | 0.092 |
153 | 153 | 0.175 |
154 | 154 | 0.793 |
155 | 155 | 0.269 |
156 | 156 | 0.965 |
157 | 157 | 0.972 |
158 | 158 | 0.92 |
159 | 159 | 0.256 |
16 | 16 | 0.273 |
160 | 160 | 0.72 |
161 | 161 | 0.164 |
162 | 162 | 0.634 |
163 | 163 | 0.51 |
164 | 164 | 0.0756 |
165 | 165 | 0.266 |
166 | 166 | 0.353 |
167 | 167 | 0.494 |
168 | 168 | 0.97 |
169 | 169 | 0.0104 |
17 | 17 | 0.217 |
18 | 18 | 0.478 |
19 | 19 | 0.206 |
2 | 2 | 0.97 |
20 | 20 | 0.69 |
21 | 21 | 0.258 |
22 | 22 | 0.182 |
23 | 23 | 0.203 |
24 | 24 | 0.0151 |
25 | 25 | 0.619 |
26 | 26 | 0.112 |
27 | 27 | 0.189 |
28 | 28 | 0.716 |
29 | 29 | 0.483 |
3 | 3 | 0.0252 |
30 | 30 | 0.846 |
31 | 31 | 0.54 |
32 | 32 | 0.712 |
33 | 33 | 0.286 |
34 | 34 | 0.367 |
35 | 35 | 0.941 |
36 | 36 | 0.175 |
37 | 37 | 0.113 |
38 | 38 | 0.243 |
39 | 39 | 0.657 |
4 | 4 | 0.905 |
40 | 40 | 0.154 |
41 | 41 | 0.416 |
42 | 42 | 0.345 |
43 | 43 | 0.0751 |
44 | 44 | 0.00322 |
45 | 45 | 0.818 |
46 | 46 | 0.164 |
47 | 47 | 0.276 |
48 | 48 | 0.282 |
49 | 49 | 0.172 |
5 | 5 | 0.364 |
50 | 50 | 0.947 |
51 | 51 | 0.558 |
52 | 52 | 0.181 |
53 | 53 | 0.475 |
54 | 54 | 0.3 |
55 | 55 | 0.0772 |
56 | 56 | 0.662 |
57 | 57 | 0.489 |
58 | 58 | 0.106 |
59 | 59 | 0.123 |
6 | 6 | 0.736 |
60 | 60 | 0.111 |
61 | 61 | 0.303 |
62 | 62 | 0.0778 |
63 | 63 | 0.444 |
64 | 64 | 0.336 |
65 | 65 | 0.173 |
66 | 66 | 0.882 |
67 | 67 | 0.283 |
68 | 68 | 0.956 |
69 | 69 | 0.522 |
7 | 7 | 0.286 |
70 | 70 | 0.0551 |
71 | 71 | 0.0667 |
72 | 72 | 0.258 |
73 | 73 | 0.0245 |
74 | 74 | 0.826 |
75 | 75 | 0.0374 |
76 | 76 | 0.431 |
77 | 77 | 0.216 |
78 | 78 | 0.0163 |
79 | 79 | 0.851 |
8 | 8 | 0.137 |
80 | 80 | 0.139 |
81 | 81 | 0.115 |
82 | 82 | 0.0386 |
83 | 83 | 0.623 |
84 | 84 | 0.581 |
85 | 85 | 0.0465 |
86 | 86 | 0.0781 |
87 | 87 | 0.0672 |
88 | 88 | 0.193 |
89 | 89 | 0.122 |
9 | 9 | 0.289 |
90 | 90 | 0.021 |
91 | 91 | 0.676 |
92 | 92 | 0.249 |
93 | 93 | 0.657 |
94 | 94 | 0.0577 |
95 | 95 | 0.302 |
96 | 96 | 0.121 |
97 | 97 | 0.998 |
98 | 98 | 0.151 |
99 | 99 | 0.926 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10855
library id: CNhs11062
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000044 human monocyte immature derived dendritic cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000990 (conventional dendritic cell)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000840 (immature conventional dendritic cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000044 (human monocyte immature derived dendritic cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)