FF:11226-116C2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005373 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00013686 | ||
|accession_numbers=CAGE;DRX008195;DRR009067;DRZ000492;DRZ001877;DRZ011842;DRZ013227 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX012363;DRR013811;DRZ003012 | |||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000030 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:25256756..25256774,-!p1@RUNX3!2.40!457.04!RUNX3;;chr2:192015701..192015743,-!p1@STAT4!2.24!234.07!STAT4;;chr2:157189180..157189290,-!p1@NR4A2!2.09!602.20!NR4A2;;chr19:45971246..45971265,+!p1@FOSB!1.98!1660.43!FOSB;;chr19:54058073..54058088,+!p1@ZNF331!1.96!90.72!ZNF331;;chr17:45810594..45810608,+!p1@TBX21!1.96!90.12!TBX21;;chr19:54041669..54041697,+!p2@ZNF331!1.96!89.72!ZNF331;;chr9:117150254..117150271,-!p1@AKNA!1.84!180.64!AKNA;;chr20:50159198..50159299,-!p1@NFATC2!1.80!89.11!NFATC2;;chr7:50343634..50343717,+!p2@IKZF1!1.80!61.49!IKZF1;;chr14:75745523..75745537,+!p1@FOS!1.79!6708.87!FOS;;chr10:35484053..35484076,+!p1@CREM!1.79!146.97!CREM;;chr10:8096772..8096787,+!p2@GATA3!1.79!71.57!GATA3;;chr15:60884706..60884743,-!p1@RORA!1.75!274.99!RORA;;chr5:133451294..133451310,+!p2@TCF7!1.74!53.83!TCF7;;chr6:106546808..106546833,+!p3@PRDM1!1.72!63.91!PRDM1;;chr9:102584262..102584276,+!p1@NR4A3!1.71!110.08!NR4A3;;chr3:63953435..63953499,+!p1@ATXN7!1.71!50.40!ATXN7;;chr5:133450365..133450444,+!p1@TCF7!1.68!203.62!TCF7;;chr10:8096631..8096660,+!p1@GATA3!1.68!56.25!GATA3;;chr3:39195075..39195088,-!p1@CSRNP1!1.67!270.76!CSRNP1;;chr17:38020392..38020477,-!p1@IKZF3!1.67!45.76!IKZF3;;chr2:192015677..192015691,-!p3@STAT4!1.67!45.36!STAT4;;chr1:25291475..25291511,-!p2@RUNX3!1.66!44.76!RUNX3;;chr2:61108878..61108891,+!p5@REL!1.66!44.35!REL;;chr2:192015750..192015793,-!p2@STAT4!1.62!54.64!STAT4;;chrY:21906594..21906622,-!p1@KDM5D!1.62!40.93!KDM5D;;chr2:231090433..231090469,+!p1@SP140!1.62!40.32!SP140;;chr1:59249688..59249703,-!p3@JUN!1.59!215.92!JUN;;chr18:46475696..46475713,-!p1@SMAD7!1.59!42.54!SMAD7;;chr9:3525727..3525828,-!p2@RFX3!1.58!92.54!RFX3;;chr1:26697243..26697258,-!p1@ZNF683!1.58!36.89!ZNF683;;chr12:72056800..72056834,+!p1@THAP2!1.54!44.56!THAP2;;chr19:16435625..16435682,+!p1@KLF2!1.53!1010.25!KLF2;;chr14:64971288..64971316,-!p2@ZBTB25!1.53!98.99!ZBTB25;;chr1:59249707..59249727,-!p1@JUN!1.52!1269.72!JUN;;chrX:106960285..106960299,-!p1@TSC22D3!1.51!803.81!TSC22D3;;chr17:37934365..37934387,-!p2@IKZF3!1.49!29.64!IKZF3;;chr8:123793988..123794016,+!p1@ZHX2!1.48!50.20!ZHX2;;chr2:145271342..145271377,-!p5@ZEB2!1.47!28.83!ZEB2;;chr20:56195474..56195506,-!p1@ZBP1!1.47!28.63!ZBP1;;chr2:231090471..231090504,+!p2@SP140!1.47!28.22!SP140;;chr6:91006518..91006570,-!p1@BACH2!1.46!62.09!BACH2;;chr9:102584241..102584261,+!p4@NR4A3!1.46!42.74!NR4A3;;chr8:67525443..67525459,-!p2@MYBL1!1.46!40.93!MYBL1;;chr5:131826457..131826514,-!p1@IRF1!1.44!984.45!IRF1;;chr7:104654690..104654704,+!p2@MLL5!1.43!51.01!MLL5;;chr3:27763807..27763822,-!p1@EOMES!1.42!25.20!EOMES;;chr6:106546834..106546850,+!p4@PRDM1!1.41!24.60!PRDM1;;chr10:3824332..3824425,-!p4@KLF6!1.40!38.31!KLF6;;chr4:109087445..109087463,-!p1@LEF1!1.40!24.19!LEF1;;chr2:68592406..68592424,+!p1@PLEK!1.39!23.39!PLEK;;chr3:23986824..23986848,+!p2@NR1D2!1.38!126.21!NR1D2;;chr10:35484090..35484104,+!p6@CREM!1.38!22.98!CREM;;chr4:103422499..103422632,+!p1@NFKB1!1.37!450.79!NFKB1;;chr3:5020939..5020952,+!p2@BHLHE40!1.37!68.55!BHLHE40;;chr19:19729477..19729542,-!p1@PBX4!1.36!45.76!PBX4;;chr7:104654718..104654741,+!p3@MLL5!1.36!31.85!MLL5;;chr17:38497662..38497713,+!p4@RARA!1.36!25.20!RARA;;chr10:35416142..35416169,+!p3@CREM!1.35!55.24!CREM;;chr3:18486354..18486377,-!p2@SATB1!1.35!26.41!SATB1;;chr19:12902289..12902307,+!p1@JUNB!1.34!4643.00!JUNB;;chr12:72056773..72056796,+!p3@THAP2!1.34!26.81!THAP2;;chr13:74707894..74707947,-!p6@KLF12!1.34!23.39!KLF12;;chr5:133451347..133451358,+!p3@TCF7!1.34!20.77!TCF7;;chr21:36421347..36421380,-!p8@RUNX1!1.34!20.77!RUNX1;;chrX:106960221..106960236,-!p3@TSC22D3!1.32!53.83!TSC22D3;;chr7:50343895..50343936,+!p5@IKZF1!1.32!19.96!IKZF1;;chr2:43453734..43453751,-!p1@ZFP36L2!1.30!1935.42!ZFP36L2;;chrX:106960180..106960197,-!p2@TSC22D3!1.30!70.97!TSC22D3;;chr3:71542684..71542720,-!p18@FOXP1!1.30!18.95!FOXP1;;chr19:12721790..12721810,+!p2@ZNF791!1.29!50.20!ZNF791;;chr19:54041645..54041661,+!p5@ZNF331!1.29!18.55!ZNF331;;chr3:71355163..71355209,-!p5@FOXP1!1.27!24.19!FOXP1;;chr8:123793252..123793266,+!p10@ZHX2!1.27!17.54!ZHX2;;chr9:102584128..102584144,+!p3@NR4A3!1.26!32.46!NR4A3;;chr3:39195139..39195150,-!p3@CSRNP1!1.26!21.77!CSRNP1;;chr2:61108695..61108753,+!p1@REL!1.25!113.50!REL;;chr3:39195037..39195069,-!p2@CSRNP1!1.25!102.82!CSRNP1;;chr11:67007548..67007610,+!p3@KDM2A!1.24!119.75!KDM2A;;chr3:71542615..71542644,-!p12@FOXP1!1.24!16.53!FOXP1;;chr6:106546786..106546802,+!p6@PRDM1!1.24!16.53!PRDM1;;chr16:89789271..89789291,+!p5@ZNF276!1.23!15.93!ZNF276;;chr14:35873947..35873965,-!p1@NFKBIA!1.22!964.29!NFKBIA;;chr1:26697189..26697205,-!p2@ZNF683!1.21!15.32!ZNF683;;chr4:57522598..57522664,-!p3@HOPX!1.21!15.32!HOPX;;chr2:208394817..208394834,+!p3@CREB1!1.20!59.07!CREB1;;chr3:71542651..71542683,-!p22@FOXP1!1.20!14.92!FOXP1;;chr2:145277640..145277771,-!p1@ZEB2!1.19!191.53!ZEB2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.19!175.40!ZC3H12A;;chr2:97202480..97202499,+!p1@ARID5A!1.19!144.35!ARID5A;;chr11:67007611..67007622,+!p6@KDM2A!1.19!19.35!KDM2A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B44;;chr12:95467267..95467350,-!p1@NR2C1!0.42!27.82!NR2C1;;chr7:129251531..129251601,+!p1@NRF1!0.42!25.81!NRF1;;chr12:6798410..6798503,-!p1@ZNF384!0.42!25.00!ZNF384;;chr1:53019059..53019176,-!p2@ZCCHC11!0.42!20.77!ZCCHC11;;chr19:53836985..53837024,+!p1@ZNF845!0.42!11.09!ZNF845;;chr10:43134001..43134026,-!p1@ZNF33B!0.42!10.08!ZNF33B;;chr16:29816957..29817031,+!p7@MAZ!0.42!10.08!MAZ;;chr1:67396044..67396071,+!p3@MIER1!0.42!7.66!MIER1;;chr6:157099198..157099221,+!p3@ARID1B!0.42!7.26!ARID1B;;chr3:71007886..71007887,-!p8@FOXP1!0.42!7.06!FOXP1;;chr6:109804367..109804402,-!p2@ZBTB24!0.42!6.25!ZBTB24;;chr10:64576105..64576133,-!p1@EGR2!0.42!4.23!EGR2;;chr6:42419043..42419087,-!p2@TRERF1!0.42!4.03!TRERF1;;chr14:64970451..64970473,-!p6@ZBTB25!0.42!3.23!ZBTB25;;chr19:4066763..4066779,-!p5@ZBTB7A!0.42!2.82!ZBTB7A;;chr1:44679370..44679422,+!p3@DMAP1!0.42!2.42!DMAP1;;chr14:35873101..35873119,-!p6@NFKBIA!0.42!2.42!NFKBIA;;chr17:38465441..38465481,+!p6@RARA!0.42!2.22!RARA;;chr19:37960314..37960329,+!p3@ZNF570!0.42!2.22!ZNF570;;chr10:3824229..3824253,-!p7@KLF6!0.42!2.02!KLF6;;chr10:8097295..8097320,+!p6@GATA3!0.42!1.61!GATA3;;chr17:40540591..40540600,-!p3@STAT3!0.42!1.61!STAT3;;chr19:36204309..36204335,+!p1@ZBTB32!0.42!1.61!ZBTB32;;chr9:32551047..32551066,-!p5@TOPORS!0.42!1.61!TOPORS;;chr21:43428446..43428452,-!p2@ZNF295!0.42!1.61!ZNF295;;chr2:122042770..122042785,-!p1@TFCP2L1!0.42!1.61!TFCP2L1;;chr3:18463329..18463336,-!p15@SATB1!0.42!1.61!SATB1;;chr3:18465604..18465618,-!p9@SATB1!0.42!1.61!SATB1;;chr3:5022254..5022271,+!p12@BHLHE40!0.42!1.61!BHLHE40;;chr4:109086281..109086319,-!p9@LEF1!0.42!1.61!LEF1;;chr4:109089095..109089144,-!p6@LEF1!0.42!1.61!LEF1;;chr4:57522701..57522712,-!p10@HOPX!0.42!1.61!HOPX;;chr19:45977697..45977713,+!p4@FOSB!0.42!1.61!FOSB;;chr19:45977916..45977932,+!p13@FOSB!0.42!1.61!FOSB;;chr19:45978377..45978386,+!p18@FOSB!0.42!1.61!FOSB;;chr1:157108746..157108762,-!p4@ETV3!0.42!1.61!ETV3;;chr1:78432503..78432507,-!p12@FUBP1!0.42!1.61!FUBP1;;chr21:36421401..36421414,-!p16@RUNX1!0.42!1.61!RUNX1;;chr5:142784911..142784925,-!p15@NR3C1!0.42!1.61!NR3C1;;chr6:45390399..45390418,+!p15@RUNX2!0.42!1.61!RUNX2;;chr7:50343510..50343521,+!p11@IKZF1!0.42!1.61!IKZF1;;chr8:60031534..60031553,-!p8@TOX!0.42!1.61!TOX;;chr8:67525467..67525472,-!p4@MYBL1!0.42!1.61!MYBL1;;chr17:38474489..38474548,+!p1@RARA!0.41!73.79!RARA;;chr3:107241792..107241845,+!p1@BBX!0.41!52.82!BBX;;chr7:28220354..28220441,-!p1@JAZF1!0.41!36.09!JAZF1;;chr1:27022485..27022543,+!p1@ARID1A!0.41!32.06!ARID1A;;chr19:52772832..52772861,+!p1@ZNF766!0.41!23.39!ZNF766;;chr9:88969303..88969335,-!p1@ZCCHC6!0.41!21.17!ZCCHC6;;chr19:55987963..55987996,+!p1@ZNF628!0.41!16.93!ZNF628;;chr17:7382935..7382961,-!p2@ZBTB4!0.41!13.71!ZBTB4;;chr13:74708504..74708549,-!p1@KLF12!0.41!9.88!KLF12;;chr2:178129358..178129403,-!p5@NFE2L2!0.41!8.87!NFE2L2;;chr19:53030906..53030952,+!p1@ZNF808!0.41!8.06!ZNF808;;chr19:37178482..37178520,+!p1@ZNF567!0.41!5.64!ZNF567;;chr7:148959065..148959126,+!p2@ZNF783!0.41!4.44!ZNF783;;chr19:21324863..21324874,+!p2@ZNF431!0.41!3.43!ZNF431;;chr3:114866124..114866149,-!p5@ZBTB20!0.41!3.23!ZBTB20;;chr9:88969287..88969297,-!p3@ZCCHC6!0.41!2.42!ZCCHC6;;chr12:19593515..19593573,+!p9@AEBP2!0.41!2.42!AEBP2;;chr19:49139477..49139552,-!p4@DBP!0.41!2.22!DBP;;chr1:35658736..35658754,-!p1@SFPQ!0.40!829.21!SFPQ;;chr1:16302565..16302605,-!p1@ZBTB17!0.40!40.12!ZBTB17;;chr2:219524310..219524385,-!p1@ZNF142!0.40!33.06!ZNF142;;chr12:122516646..122516668,+!p1@MLXIP!0.40!30.44!MLXIP;;chr19:12662240..12662310,-!p1@ZNF564,p1@ZNF709!0.40!17.14!ZNF564;;chr15:50647274..50647336,-!p1@GABPB1!0.40!15.52!GABPB1;;chr19:18392274..18392286,-!p3@JUND!0.40!14.31!JUND;;chr13:27998831..27998851,+!p2@GTF3A!0.40!13.10!GTF3A;;chr19:58144529..58144579,+!p1@ZNF211!0.40!11.69!ZNF211;;chr12:57400261..57400344,-!p1@ZBTB39!0.40!10.28!ZBTB39;;chr1:205601000..205601055,-!p2@ELK4!0.40!8.87!ELK4;;chr19:23870007..23870022,-!p2@ZNF675!0.40!6.65!ZNF675;;chr16:29817433..29817468,+!p8@MAZ!0.40!6.45!MAZ;;chr11:45168182..45168214,+!p1@ENST00000399269!0.40!5.44!PRDM11;;chr13:20357110..20357121,-!p2@PSPC1!0.40!5.44!PSPC1;;chr19:37407411..37407451,+!p3@ZNF568!0.40!2.22!ZNF568;;chr19:37464063..37464127,+!p2@ZNF568!0.40!2.22!ZNF568;;chr2:231077626..231077651,-!p6@SP110!0.40!2.22!SP110;;chr2:28616604..28616615,+!p6@FOSL2!0.40!2.22!FOSL2;;chr3:170076314..170076334,+!p2@SKIL!0.40!2.22!SKIL;;chr20:44600785..44600794,-!p7@ZNF335!0.40!1.81!ZNF335;;chr19:1863568..1863586,-!p1@KLF16!0.39!73.79!KLF16;;chr19:45251943..45252006,+!p1@BCL3!0.39!58.47!BCL3;;chr17:65821603..65821635,+!p1@BPTF!0.39!36.69!BPTF;;chr16:69599899..69599919,+!p2@NFAT5!0.39!24.60!NFAT5;;chr1:247267618..247267674,-!p1@ZNF669!0.39!17.14!ZNF669;;chr19:35759424..35759454,+!p2@USF2!0.39!11.89!USF2;;chr18:74534479..74534551,+!p1@ZNF236!0.39!6.05!ZNF236;;chr19:42636586..42636607,-!p1@POU2F2!0.39!5.44!POU2F2;;chr10:76586311..76586341,+!p2@KAT6B!0.39!5.44!KAT6B;;chr8:123794102..123794160,+!p3@ZHX2!0.39!5.44!ZHX2;;chr9:37465273..37465338,-!p2@ZBTB5!0.39!5.04!Z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| |expression_enrichment_score=chr1:25256756..25256774,-!p1@RUNX3!2.40!457.04!RUNX3;;chr2:192015701..192015743,-!p1@STAT4!2.24!234.07!STAT4;;chr2:157189180..157189290,-!p1@NR4A2!2.09!602.20!NR4A2;;chr19:45971246..45971265,+!p1@FOSB!1.98!1660.43!FOSB;;chr19:54058073..54058088,+!p1@ZNF331!1.96!90.72!ZNF331;;chr17:45810594..45810608,+!p1@TBX21!1.96!90.12!TBX21;;chr19:54041669..54041697,+!p2@ZNF331!1.96!89.72!ZNF331;;chr9:117150254..117150271,-!p1@AKNA!1.84!180.64!AKNA;;chr20:50159198..50159299,-!p1@NFATC2!1.80!89.11!NFATC2;;chr7:50343634..50343717,+!p2@IKZF1!1.80!61.49!IKZF1;;chr14:75745523..75745537,+!p1@FOS!1.79!6708.87!FOS;;chr10:35484053..35484076,+!p1@CREM!1.79!146.97!CREM;;chr10:8096772..8096787,+!p2@GATA3!1.79!71.57!GATA3;;chr15:60884706..60884743,-!p1@RORA!1.75!274.99!RORA;;chr5:133451294..133451310,+!p2@TCF7!1.74!53.83!TCF7;;chr6:106546808..106546833,+!p3@PRDM1!1.72!63.91!PRDM1;;chr9:102584262..102584276,+!p1@NR4A3!1.71!110.08!NR4A3;;chr3:63953435..63953499,+!p1@ATXN7!1.71!50.40!ATXN7;;chr5:133450365..133450444,+!p1@TCF7!1.68!203.62!TCF7;;chr10:8096631..8096660,+!p1@GATA3!1.68!56.25!GATA3;;chr3:39195075..39195088,-!p1@CSRNP1!1.67!270.76!CSRNP1;;chr17:38020392..38020477,-!p1@IKZF3!1.67!45.76!IKZF3;;chr2:192015677..192015691,-!p3@STAT4!1.67!45.36!STAT4;;chr1:25291475..25291511,-!p2@RUNX3!1.66!44.76!RUNX3;;chr2:61108878..61108891,+!p5@REL!1.66!44.35!REL;;chr2:192015750..192015793,-!p2@STAT4!1.62!54.64!STAT4;;chrY:21906594..21906622,-!p1@KDM5D!1.62!40.93!KDM5D;;chr2:231090433..231090469,+!p1@SP140!1.62!40.32!SP140;;chr1:59249688..59249703,-!p3@JUN!1.59!215.92!JUN;;chr18:46475696..46475713,-!p1@SMAD7!1.59!42.54!SMAD7;;chr9:3525727..3525828,-!p2@RFX3!1.58!92.54!RFX3;;chr1:26697243..26697258,-!p1@ZNF683!1.58!36.89!ZNF683;;chr12:72056800..72056834,+!p1@THAP2!1.54!44.56!THAP2;;chr19:16435625..16435682,+!p1@KLF2!1.53!1010.25!KLF2;;chr14:64971288..64971316,-!p2@ZBTB25!1.53!98.99!ZBTB25;;chr1:59249707..59249727,-!p1@JUN!1.52!1269.72!JUN;;chrX:106960285..106960299,-!p1@TSC22D3!1.51!803.81!TSC22D3;;chr17:37934365..37934387,-!p2@IKZF3!1.49!29.64!IKZF3;;chr8:123793988..123794016,+!p1@ZHX2!1.48!50.20!ZHX2;;chr2:145271342..145271377,-!p5@ZEB2!1.47!28.83!ZEB2;;chr20:56195474..56195506,-!p1@ZBP1!1.47!28.63!ZBP1;;chr2:231090471..231090504,+!p2@SP140!1.47!28.22!SP140;;chr6:91006518..91006570,-!p1@BACH2!1.46!62.09!BACH2;;chr9:102584241..102584261,+!p4@NR4A3!1.46!42.74!NR4A3;;chr8:67525443..67525459,-!p2@MYBL1!1.46!40.93!MYBL1;;chr5:131826457..131826514,-!p1@IRF1!1.44!984.45!IRF1;;chr7:104654690..104654704,+!p2@MLL5!1.43!51.01!MLL5;;chr3:27763807..27763822,-!p1@EOMES!1.42!25.20!EOMES;;chr6:106546834..106546850,+!p4@PRDM1!1.41!24.60!PRDM1;;chr10:3824332..3824425,-!p4@KLF6!1.40!38.31!KLF6;;chr4:109087445..109087463,-!p1@LEF1!1.40!24.19!LEF1;;chr2:68592406..68592424,+!p1@PLEK!1.39!23.39!PLEK;;chr3:23986824..23986848,+!p2@NR1D2!1.38!126.21!NR1D2;;chr10:35484090..35484104,+!p6@CREM!1.38!22.98!CREM;;chr4:103422499..103422632,+!p1@NFKB1!1.37!450.79!NFKB1;;chr3:5020939..5020952,+!p2@BHLHE40!1.37!68.55!BHLHE40;;chr19:19729477..19729542,-!p1@PBX4!1.36!45.76!PBX4;;chr7:104654718..104654741,+!p3@MLL5!1.36!31.85!MLL5;;chr17:38497662..38497713,+!p4@RARA!1.36!25.20!RARA;;chr10:35416142..35416169,+!p3@CREM!1.35!55.24!CREM;;chr3:18486354..18486377,-!p2@SATB1!1.35!26.41!SATB1;;chr19:12902289..12902307,+!p1@JUNB!1.34!4643.00!JUNB;;chr12:72056773..72056796,+!p3@THAP2!1.34!26.81!THAP2;;chr13:74707894..74707947,-!p6@KLF12!1.34!23.39!KLF12;;chr5:133451347..133451358,+!p3@TCF7!1.34!20.77!TCF7;;chr21:36421347..36421380,-!p8@RUNX1!1.34!20.77!RUNX1;;chrX:106960221..106960236,-!p3@TSC22D3!1.32!53.83!TSC22D3;;chr7:50343895..50343936,+!p5@IKZF1!1.32!19.96!IKZF1;;chr2:43453734..43453751,-!p1@ZFP36L2!1.30!1935.42!ZFP36L2;;chrX:106960180..106960197,-!p2@TSC22D3!1.30!70.97!TSC22D3;;chr3:71542684..71542720,-!p18@FOXP1!1.30!18.95!FOXP1;;chr19:12721790..12721810,+!p2@ZNF791!1.29!50.20!ZNF791;;chr19:54041645..54041661,+!p5@ZNF331!1.29!18.55!ZNF331;;chr3:71355163..71355209,-!p5@FOXP1!1.27!24.19!FOXP1;;chr8:123793252..123793266,+!p10@ZHX2!1.27!17.54!ZHX2;;chr9:102584128..102584144,+!p3@NR4A3!1.26!32.46!NR4A3;;chr3:39195139..39195150,-!p3@CSRNP1!1.26!21.77!CSRNP1;;chr2:61108695..61108753,+!p1@REL!1.25!113.50!REL;;chr3:39195037..39195069,-!p2@CSRNP1!1.25!102.82!CSRNP1;;chr11:67007548..67007610,+!p3@KDM2A!1.24!119.75!KDM2A;;chr3:71542615..71542644,-!p12@FOXP1!1.24!16.53!FOXP1;;chr6:106546786..106546802,+!p6@PRDM1!1.24!16.53!PRDM1;;chr16:89789271..89789291,+!p5@ZNF276!1.23!15.93!ZNF276;;chr14:35873947..35873965,-!p1@NFKBIA!1.22!964.29!NFKBIA;;chr1:26697189..26697205,-!p2@ZNF683!1.21!15.32!ZNF683;;chr4:57522598..57522664,-!p3@HOPX!1.21!15.32!HOPX;;chr2:208394817..208394834,+!p3@CREB1!1.20!59.07!CREB1;;chr3:71542651..71542683,-!p22@FOXP1!1.20!14.92!FOXP1;;chr2:145277640..145277771,-!p1@ZEB2!1.19!191.53!ZEB2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.19!175.40!ZC3H12A;;chr2:97202480..97202499,+!p1@ARID5A!1.19!144.35!ARID5A;;chr11:67007611..67007622,+!p6@KDM2A!1.19!19.35!KDM2A;;chr12:51158359..51158395,+!p4@ATF1!1.19!14.52!ATF1;;chr6:391743..391759,+!p1@IRF4!1.19!14.52!IRF4;;chr4:38665769..38665801,+!p2@KLF3!1.18!127.01!KLF3;;chr1:59249645..59249656,-!p4@JUN!1.18!35.68!JUN;;chr8:81397846..81397860,+!p3@ZBTB10!1.18!17.54!ZBTB10;;chr8:81397820..81397836,+!p2@ZBTB10!1.17!17.34!ZBTB10;;chr2:61108808..61108821,+!p3@REL!1.17!17.34!REL;;chr11:85375237..85375277,-!p4@CREBZF!1.17!15.73!CREBZF;;chr15:57211634..57211657,+!p5@TCF12!1.16!20.36!TCF12;;chr4:57522166..57522260,-!p2@HOPX!1.16!15.32!HOPX;;chr14:99738138..99738163,-!p1@BCL11B!1.16!13.31!BCL11B;;chr10:104154246..104154347,+!p3@NFKB2!1.15!80.64!NFKB2;;chr8:81397876..81397898,+!p5@ZBTB10!1.14!15.32!ZBTB10;;chr10:3827389..3827408,-!p1@KLF6!1.13!951.79!KLF6;;chr16:29819579..29819591,+!p32@MAZ!1.13!12.50!MAZ;;chr9:102584278..102584285,+!p5@NR4A3!1.12!12.30!NR4A3;;chr6:12009042..12009092,+!p6@HIVEP1!1.11!15.32!HIVEP1;;chr14:75746722..75746777,+!p2@FOS!1.11!15.32!FOS;;chr17:38020557..38020572,-!p4@IKZF3!1.11!11.89!IKZF3;;chr7:50344251..50344288,+!p3@IKZF1!1.11!11.89!IKZF1;;chr8:102218439..102218455,-!p3@ZNF706!1.11!11.89!ZNF706;;chr7:64838786..64838809,+!p2@ZNF92!1.10!65.93!ZNF92;;chr15:60884747..60884774,-!p3@RORA!1.10!28.63!RORA;;chr1:10754477..10754517,-!p1@CASZ1!1.10!19.56!CASZ1;;chr7:106809470..106809481,+!p2@HBP1!1.10!16.33!HBP1;;chr7:50344289..50344323,+!p1@IKZF1!1.10!11.49!IKZF1;;chr17:38020516..38020544,-!p5@IKZF3!1.10!11.49!IKZF3;;chr14:64971461..64971542,+!p1@ZBTB1!1.09!226.20!ZBTB1;;chr8:67525473..67525518,-!p1@MYBL1!1.09!26.01!MYBL1;;chr19:45972701..45972774,+!p2@FOSB!1.09!15.52!FOSB;;chr19:18392422..18392440,-!p1@JUND!1.08!1527.37!JUND;;chr8:60031619..60031676,-!p1@TOX!1.08!23.99!TOX;;chr6:91006575..91006602,-!p2@BACH2!1.08!16.33!BACH2;;chr5:142782823..142782854,-!p3@NR3C1!1.08!15.73!NR3C1;;chr2:68592394..68592405,+!p2@PLEK!1.08!11.09!PLEK;;chr15:31619326..31619390,+!p2@KLF13!1.07!124.79!KLF13;;chr3:63898321..63898396,+!p3@ATXN7!1.07!24.60!ATXN7;;chr2:157189617..157189667,-!p4@NR4A2!1.07!10.69!NR4A2;;chr2:97202991..97203043,+!p3@ARID5A!1.07!10.69!ARID5A;;chr9:32550839..32550962,-!p3@TOPORS!1.06!26.21!TOPORS;;chr3:18487057..18487105,-!p4@SATB1!1.04!10.08!SATB1;;chr4:109090075..109090095,-!p2@LEF1!1.04!10.08!LEF1;;chr16:29819630..29819645,+!p37@MAZ!1.04!9.88!MAZ;;chr7:137620650..137620677,-!p3@CREB3L2!1.04!9.88!CREB3L2;;chr11:67007477..67007493,+!p2@KDM2A!1.03!83.47!KDM2A;;chr3:71179699..71179744,-!p2@FOXP1!1.03!72.98!FOXP1;;chr7:17338324..17338341,+!p3@AHR!1.03!33.47!AHR;;chr16:79633894..79633954,-!p3@MAF!1.03!18.75!MAF;;chr12:72056749..72056767,+!p6@THAP2!1.03!10.89!THAP2;;chr11:128392085..128392232,-!p1@ETS1!1.02!320.76!ETS1;;chr13:74708029..74708077,-!p2@KLF12!1.02!27.82!KLF12;;chrX:106960249..106960260,-!p5@TSC22D3!1.02!15.32!TSC22D3;;chr20:44600199..44600219,-!p3@ZNF335!1.02!12.90!ZNF335;;chr14:90085458..90085557,-!p1@FOXN3!1.01!99.19!FOXN3;;chr1:91487774..91487802,-!p2@ZNF644!1.01!25.00!ZNF644;;chr19:47616992..47617011,-!p4@ZC3H4!1.01!20.16!ZC3H4;;chr10:35416125..35416138,+!p10@CREM!1.01!10.89!CREM;;chr2:28616358..28616380,+!p3@FOSL2!1.00!47.98!FOSL2;;chr11:128392273..128392308,-!p2@ETS1!1.00!39.11!ETS1;;chr14:64971438..64971450,+!p2@ZBTB1!1.00!21.37!ZBTB1;;chr17:36861735..36861755,+!p4@MLLT6!1.00!15.52!MLLT6;;chr15:31619407..31619419,+!p9@KLF13!1.00!11.29!KLF13;;chr17:45810816..45810838,+!p2@TBX21!1.00!9.07!TBX21;;chr16:79634624..79634642,-!p1@MAF!0.99!35.68!MAF;;chr6:106546731..106546755,+!p5@PRDM1!0.99!8.87!PRDM1;;chr12:57914286..57914304,-!p1@DDIT3!0.98!321.36!DDIT3;;chr4:38665810..38665827,+!p1@KLF3!0.98!128.22!KLF3;;chr7:99097863..99097936,-!p1@ZNF394!0.98!88.71!ZNF394;;chr9:102584159..102584174,+!p2@NR4A3!0.98!15.73!NR4A3;;chr3:150126904..150126958,+!p7@TSC22D2!0.98!15.32!TSC22D2;;chr7:127032330..127032356,-!p3@ZNF800!0.98!11.09!ZNF800;;chr14:99737588..99737617,-!p4@BCL11B!0.98!8.47!BCL11B;;chr19:54041574..54041589,+!p6@ZNF331!0.98!8.47!ZNF331;;chr13:41593425..41593480,-!p1@ELF1!0.97!54.23!ELF1;;chr6:45390269..45390298,+!p5@RUNX2!0.97!13.91!RUNX2;;chr7:50344144..50344157,+!p6@IKZF1!0.97!8.27!IKZF1;;chr4:57522513..57522548,-!p4@HOPX!0.97!8.27!HOPX;;chr13:41240717..41240735,-!p2@FOXO1!0.96!56.65!FOXO1;;chr6:45390300..45390335,+!p4@RUNX2!0.96!12.70!RUNX2;;chr10:35416223..35416234,+!p12@CREM!0.96!8.06!CREM;;chrY:2803415..2803468,+!p1@ZFY!0.96!8.06!ZFY;;chr15:31619140..31619152,+!p11@KLF13!0.96!8.06!KLF13;;chr1:59249732..59249749,-!p2@JUN!0.95!99.80!JUN;;chr1:45805693..45805718,+!p3@TOE1!0.95!17.54!TOE1;;chr14:64970670..64970712,-!p3@ZBTB25!0.95!17.54!ZBTB25;;chr8:41909982..41910009,-!p2@KAT6A!0.95!9.07!KAT6A;;chr16:88519743..88519754,+!p2@ZFPM1!0.95!8.67!ZFPM1;;chr1:92951607..92951661,-!p1@GFI1!0.95!7.86!GFI1;;chr1:14075903..14075940,+!p1@PRDM2!0.94!169.75!PRDM2;;chr22:38597987..38598021,+!p2@MAFF!0.94!49.19!MAFF;;chr6:143266297..143266356,-!p1@HIVEP2!0.94!38.31!HIVEP2;;chr16:68119324..68119364,+!p1@NFATC3!0.94!35.28!NFATC3;;chr1:91487836..91487854,-!p3@ZNF644!0.94!17.94!ZNF644;;chr1:25256175..25256228,-!p5@RUNX3!0.9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B44;;chr12:95467267..95467350,-!p1@NR2C1!0.42!27.82!NR2C1;;chr7:129251531..129251601,+!p1@NRF1!0.42!25.81!NRF1;;chr12:6798410..6798503,-!p1@ZNF384!0.42!25.00!ZNF384;;chr1:53019059..53019176,-!p2@ZCCHC11!0.42!20.77!ZCCHC11;;chr19:53836985..53837024,+!p1@ZNF845!0.42!11.09!ZNF845;;chr10:43134001..43134026,-!p1@ZNF33B!0.42!10.08!ZNF33B;;chr16:29816957..29817031,+!p7@MAZ!0.42!10.08!MAZ;;chr1:67396044..67396071,+!p3@MIER1!0.42!7.66!MIER1;;chr6:157099198..157099221,+!p3@ARID1B!0.42!7.26!ARID1B;;chr3:71007886..71007887,-!p8@FOXP1!0.42!7.06!FOXP1;;chr6:109804367..109804402,-!p2@ZBTB24!0.42!6.25!ZBTB24;;chr10:64576105..64576133,-!p1@EGR2!0.42!4.23!EGR2;;chr6:42419043..42419087,-!p2@TRERF1!0.42!4.03!TRERF1;;chr14:64970451..64970473,-!p6@ZBTB25!0.42!3.23!ZBTB25;;chr19:4066763..4066779,-!p5@ZBTB7A!0.42!2.82!ZBTB7A;;chr1:44679370..44679422,+!p3@DMAP1!0.42!2.42!DMAP1;;chr14:35873101..35873119,-!p6@NFKBIA!0.42!2.42!NFKBIA;;chr17:38465441..38465481,+!p6@RARA!0.42!2.22!RARA;;chr19:37960314..37960329,+!p3@ZNF570!0.42!2.22!ZNF570;;chr10:3824229..3824253,-!p7@KLF6!0.42!2.02!KLF6;;chr10:8097295..8097320,+!p6@GATA3!0.42!1.61!GATA3;;chr17:40540591..40540600,-!p3@STAT3!0.42!1.61!STAT3;;chr19:36204309..36204335,+!p1@ZBTB32!0.42!1.61!ZBTB32;;chr9:32551047..32551066,-!p5@TOPORS!0.42!1.61!TOPORS;;chr21:43428446..43428452,-!p2@ZNF295!0.42!1.61!ZNF295;;chr2:122042770..122042785,-!p1@TFCP2L1!0.42!1.61!TFCP2L1;;chr3:18463329..18463336,-!p15@SATB1!0.42!1.61!SATB1;;chr3:18465604..18465618,-!p9@SATB1!0.42!1.61!SATB1;;chr3:5022254..5022271,+!p12@BHLHE40!0.42!1.61!BHLHE40;;chr4:109086281..109086319,-!p9@LEF1!0.42!1.61!LEF1;;chr4:109089095..109089144,-!p6@LEF1!0.42!1.61!LEF1;;chr4:57522701..57522712,-!p10@HOPX!0.42!1.61!HOPX;;chr19:45977697..45977713,+!p4@FOSB!0.42!1.61!FOSB;;chr19:45977916..45977932,+!p13@FOSB!0.42!1.61!FOSB;;chr19:45978377..45978386,+!p18@FOSB!0.42!1.61!FOSB;;chr1:157108746..157108762,-!p4@ETV3!0.42!1.61!ETV3;;chr1:78432503..78432507,-!p12@FUBP1!0.42!1.61!FUBP1;;chr21:36421401..36421414,-!p16@RUNX1!0.42!1.61!RUNX1;;chr5:142784911..142784925,-!p15@NR3C1!0.42!1.61!NR3C1;;chr6:45390399..45390418,+!p15@RUNX2!0.42!1.61!RUNX2;;chr7:50343510..50343521,+!p11@IKZF1!0.42!1.61!IKZF1;;chr8:60031534..60031553,-!p8@TOX!0.42!1.61!TOX;;chr8:67525467..67525472,-!p4@MYBL1!0.42!1.61!MYBL1;;chr17:38474489..38474548,+!p1@RARA!0.41!73.79!RARA;;chr3:107241792..107241845,+!p1@BBX!0.41!52.82!BBX;;chr7:28220354..28220441,-!p1@JAZF1!0.41!36.09!JAZF1;;chr1:27022485..27022543,+!p1@ARID1A!0.41!32.06!ARID1A;;chr19:52772832..52772861,+!p1@ZNF766!0.41!23.39!ZNF766;;chr9:88969303..88969335,-!p1@ZCCHC6!0.41!21.17!ZCCHC6;;chr19:55987963..55987996,+!p1@ZNF628!0.41!16.93!ZNF628;;chr17:7382935..7382961,-!p2@ZBTB4!0.41!13.71!ZBTB4;;chr13:74708504..74708549,-!p1@KLF12!0.41!9.88!KLF12;;chr2:178129358..178129403,-!p5@NFE2L2!0.41!8.87!NFE2L2;;chr19:53030906..53030952,+!p1@ZNF808!0.41!8.06!ZNF808;;chr19:37178482..37178520,+!p1@ZNF567!0.41!5.64!ZNF567;;chr7:148959065..148959126,+!p2@ZNF783!0.41!4.44!ZNF783;;chr19:21324863..21324874,+!p2@ZNF431!0.41!3.43!ZNF431;;chr3:114866124..114866149,-!p5@ZBTB20!0.41!3.23!ZBTB20;;chr9:88969287..88969297,-!p3@ZCCHC6!0.41!2.42!ZCCHC6;;chr12:19593515..19593573,+!p9@AEBP2!0.41!2.42!AEBP2;;chr19:49139477..49139552,-!p4@DBP!0.41!2.22!DBP;;chr1:35658736..35658754,-!p1@SFPQ!0.40!829.21!SFPQ;;chr1:16302565..16302605,-!p1@ZBTB17!0.40!40.12!ZBTB17;;chr2:219524310..219524385,-!p1@ZNF142!0.40!33.06!ZNF142;;chr12:122516646..122516668,+!p1@MLXIP!0.40!30.44!MLXIP;;chr19:12662240..12662310,-!p1@ZNF564,p1@ZNF709!0.40!17.14!ZNF564;;chr15:50647274..50647336,-!p1@GABPB1!0.40!15.52!GABPB1;;chr19:18392274..18392286,-!p3@JUND!0.40!14.31!JUND;;chr13:27998831..27998851,+!p2@GTF3A!0.40!13.10!GTF3A;;chr19:58144529..58144579,+!p1@ZNF211!0.40!11.69!ZNF211;;chr12:57400261..57400344,-!p1@ZBTB39!0.40!10.28!ZBTB39;;chr1:205601000..205601055,-!p2@ELK4!0.40!8.87!ELK4;;chr19:23870007..23870022,-!p2@ZNF675!0.40!6.65!ZNF675;;chr16:29817433..29817468,+!p8@MAZ!0.40!6.45!MAZ;;chr11:45168182..45168214,+!p1@ENST00000399269!0.40!5.44!PRDM11;;chr13:20357110..20357121,-!p2@PSPC1!0.40!5.44!PSPC1;;chr19:37407411..37407451,+!p3@ZNF568!0.40!2.22!ZNF568;;chr19:37464063..37464127,+!p2@ZNF568!0.40!2.22!ZNF568;;chr2:231077626..231077651,-!p6@SP110!0.40!2.22!SP110;;chr2:28616604..28616615,+!p6@FOSL2!0.40!2.22!FOSL2;;chr3:170076314..170076334,+!p2@SKIL!0.40!2.22!SKIL;;chr20:44600785..44600794,-!p7@ZNF335!0.40!1.81!ZNF335;;chr19:1863568..1863586,-!p1@KLF16!0.39!73.79!KLF16;;chr19:45251943..45252006,+!p1@BCL3!0.39!58.47!BCL3;;chr17:65821603..65821635,+!p1@BPTF!0.39!36.69!BPTF;;chr16:69599899..69599919,+!p2@NFAT5!0.39!24.60!NFAT5;;chr1:247267618..247267674,-!p1@ZNF669!0.39!17.14!ZNF669;;chr19:35759424..35759454,+!p2@USF2!0.39!11.89!USF2;;chr18:74534479..74534551,+!p1@ZNF236!0.39!6.05!ZNF236;;chr19:42636586..42636607,-!p1@POU2F2!0.39!5.44!POU2F2;;chr10:76586311..76586341,+!p2@KAT6B!0.39!5.44!KAT6B;;chr8:123794102..123794160,+!p3@ZHX2!0.39!5.44!ZHX2;;chr9:37465273..37465338,-!p2@ZBTB5!0.39!5.04!Z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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000625;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988 | |||
|ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD8%252b%2520T%2520Cells%252c%2520donor1.CNhs10854.11226-116C2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD8%252b%2520T%2520Cells%252c%2520donor1.CNhs10854.11226-116C2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD8%252b%2520T%2520Cells%252c%2520donor1.CNhs10854.11226-116C2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD8%252b%2520T%2520Cells%252c%2520donor1.CNhs10854.11226-116C2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD8%252b%2520T%2520Cells%252c%2520donor1.CNhs10854.11226-116C2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11226-116C2 | |id=FF:11226-116C2 | ||
|is_a=EFO:0002091;;FF:0000030;;FF:0000210 | |is_a=EFO:0002091;;FF:0000030;;FF:0000210 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10854!SRhi10010.TTAGGC | |||
|library_id_phase_based=2:CNhs10854 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11226 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.TTAGGC.11226 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11226 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.TTAGGC.11226 | |||
|name=CD8+ T Cells, donor1 | |name=CD8+ T Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10854,LSID702,release008,COMPLETED | |profile_hcage=CNhs10854,LSID702,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10010,,, | |profile_srnaseq=SRhi10010,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0.0797623568580576,0.0451083601540771,0.382241736802171,0.142281835858454,-0.242522382147913,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.07356065349037,0,0,0,0,0,0.0491658538291903,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.145305757189883,0,0,0,0,0,0,0,0,0.26695840809862,0,0,0,0.0797623568580576,0,0,0,0.108434028997858,0,0,0.159476782140664,0,0,0,0,0,0,0,0,0,0,1.99288941156331,0,0,0.256820409353761,0,0,0,0.141841660888439,0,0,0,0.0367818418714157,0,0,-0.0778895085438208,0,0,0,-0.0425986350337753,0.425333075629893,0.0398811784290288,0,0.208557567032272,0,0.567444453141754,-0.138477200800895,0,0,0,0,0,0.12841020467688,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.0797623568580576,0.211292591731867,0.0797623568580576,0,0,0,0,0 | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=3H100-26-10 | |rna_catalog_number=3H100-26-10 | ||
| Line 58: | Line 82: | ||
|rna_tube_id=116C2 | |rna_tube_id=116C2 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10010.TTAGGC | |||
|sample_age=47 | |sample_age=47 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 106: | ||
|top_motifs=RORA:4.40643880323;PAX3,7:4.10006642284;CREB1:3.59266383175;ATF4:3.49165621849;ATF5_CREB3:3.31829025795;RFX2..5_RFXANK_RFXAP:3.26207926989;RUNX1..3:3.2343750784;FOXO1,3,4:3.04924425332;FOX{D1,D2}:2.92538871625;FOXN1:2.85675310843;ELF1,2,4:2.64904710519;FOX{F1,F2,J1}:2.63598340109;BPTF:2.4754705531;T:2.44518272175;RFX1:2.38439464359;NFKB1_REL_RELA:2.27292644584;DMAP1_NCOR{1,2}_SMARC:2.1501130154;PITX1..3:2.14197759243;ETS1,2:2.10454812661;PAX2:2.0968287398;TBX4,5:2.0908599006;JUN:1.99962778634;HMX1:1.89546662281;TGIF1:1.80250631952;FOXP1:1.74085143054;SPI1:1.60266257228;ATF2:1.47456877986;ATF6:1.44132204818;LEF1_TCF7_TCF7L1,2:1.41981657358;HIF1A:1.31751301886;IRF1,2:1.30754387281;TLX2:1.2990406982;BREu{core}:1.23507152576;NKX2-1,4:1.19550165057;CDX1,2,4:1.17632743801;SPIB:1.15669055422;ZBTB16:1.12438208172;IKZF2:1.05747912754;PAX6:1.04488671771;FOX{I1,J2}:0.996354290082;ELK1,4_GABP{A,B1}:0.904436492712;PAX4:0.835992372998;GATA6:0.825340005708;PPARG:0.77881498675;NKX6-1,2:0.775606502006;NANOG{mouse}:0.613125234483;ZNF384:0.602266957949;EP300:0.580606328728;NFATC1..3:0.574730227209;MYB:0.552104810246;EGR1..3:0.550306040939;FOSL2:0.546632251782;SOX2:0.480332531686;HBP1_HMGB_SSRP1_UBTF:0.46633841802;MAFB:0.437430721428;IRF7:0.422464070285;HOX{A6,A7,B6,B7}:0.3292432712;TFDP1:0.298795549204;RREB1:0.276388415184;SMAD1..7,9:0.256607040191;FOS_FOS{B,L1}_JUN{B,D}:0.249299263637;SREBF1,2:0.223670819177;NFIX:0.20392934323;HMGA1,2:0.129210436867;NFY{A,B,C}:0.0638106026285;PDX1:0.0597262563478;NFIL3:0.0588969352109;BACH2:0.0335258926751;ZEB1:0.0247541657884;MYFfamily:-0.0183699640965;NFE2L1:-0.0441836939011;AHR_ARNT_ARNT2:-0.0525890636833;CUX2:-0.0528015395477;SNAI1..3:-0.0651736069769;STAT2,4,6:-0.0792981893187;FOXA2:-0.105411446845;SOX5:-0.118712089487;TOPORS:-0.119423915518;NFE2:-0.146574422336;NKX3-1:-0.173915293274;AIRE:-0.178876926028;FOXP3:-0.178962643053;TAL1_TCF{3,4,12}:-0.187074315645;CRX:-0.187842952767;MTE{core}:-0.201079416296;NRF1:-0.248079557233;PRRX1,2:-0.258762674316;POU2F1..3:-0.281604308786;MED-1{core}:-0.295698657875;NANOG:-0.309148171848;NR5A1,2:-0.311759732007;PBX1:-0.353705939486;STAT5{A,B}:-0.364391427322;E2F1..5:-0.374663941742;CEBPA,B_DDIT3:-0.378178933837;EVI1:-0.378221761157;FOXL1:-0.39002092737;AR:-0.396527174725;MYOD1:-0.410802810158;HLF:-0.422329202491;NFE2L2:-0.424407172678;GCM1,2:-0.432837541501;YY1:-0.453822103751;RXRA_VDR{dimer}:-0.45940105263;ZFP161:-0.470660085674;PAX5:-0.4745519662;FOXQ1:-0.484169442246;TFAP4:-0.488477863286;MTF1:-0.489617435184;SRF:-0.545197761712;HES1:-0.550797102322;TFAP2B:-0.552669417511;NHLH1,2:-0.563672909606;LMO2:-0.569760460712;GLI1..3:-0.620120671108;HNF1A:-0.643925344766;bHLH_family:-0.646895753239;HNF4A_NR2F1,2:-0.691178235511;XBP1:-0.696925839933;ALX4:-0.713804966394;STAT1,3:-0.720417762312;RBPJ:-0.724254377751;ZBTB6:-0.73213981687;FOXD3:-0.733157340239;PATZ1:-0.751191086236;HOXA9_MEIS1:-0.758866802;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.760097648724;MZF1:-0.764149546016;SPZ1:-0.786017939671;MAZ:-0.794866428704;ZNF148:-0.803516143169;NKX2-2,8:-0.812156823675;ZNF143:-0.838486438955;DBP:-0.854778641283;REST:-0.905132442149;ZNF423:-0.910697712511;FOXM1:-0.917733744615;ZIC1..3:-0.918948137609;VSX1,2:-0.921329762143;HSF1,2:-0.925237097507;SOX{8,9,10}:-0.954051078553;OCT4_SOX2{dimer}:-0.974742861286;SOX17:-0.987104174615;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.998295020036;HAND1,2:-1.06145128232;GFI1:-1.07193549135;POU1F1:-1.08522036868;MEF2{A,B,C,D}:-1.09991761256;HIC1:-1.11155000824;TFAP2{A,C}:-1.13875886353;SP1:-1.17060416333;ALX1:-1.19876491567;ZNF238:-1.23010887498;LHX3,4:-1.23947816499;POU6F1:-1.24979204411;GATA4:-1.29660511963;TFCP2:-1.30440419833;NR1H4:-1.36456303545;ARID5B:-1.40032101548;MYBL2:-1.41175490315;TBP:-1.4286251916;TP53:-1.4671186094;RXR{A,B,G}:-1.47332441016;POU5F1:-1.47686002173;UFEwm:-1.52400777129;CDC5L:-1.54615323175;XCPE1{core}:-1.58323153571;TEF:-1.59647433466;NKX2-3_NKX2-5:-1.65299420261;HOX{A5,B5}:-1.66301440093;GTF2I:-1.66890364307;GTF2A1,2:-1.67546367699;ESRRA:-1.68740163636;GFI1B:-1.73433725861;TEAD1:-1.79340222042;TLX1..3_NFIC{dimer}:-1.82132086224;ADNP_IRX_SIX_ZHX:-1.89015706268;POU3F1..4:-1.91695830848;PAX8:-1.9490270473;EN1,2:-2.00047072706;PRDM1:-2.04231831714;HOX{A4,D4}:-2.08460468431;GZF1:-2.09584265112;ONECUT1,2:-2.16501279144;NR6A1:-2.18857802588;EBF1:-2.35065207729;ESR1:-2.37072897289;KLF4:-2.38087518037;NKX3-2:-2.52752922159;IKZF1:-2.65005295601;PAX1,9:-2.66811734421;NR3C1:-3.19153879684 | |top_motifs=RORA:4.40643880323;PAX3,7:4.10006642284;CREB1:3.59266383175;ATF4:3.49165621849;ATF5_CREB3:3.31829025795;RFX2..5_RFXANK_RFXAP:3.26207926989;RUNX1..3:3.2343750784;FOXO1,3,4:3.04924425332;FOX{D1,D2}:2.92538871625;FOXN1:2.85675310843;ELF1,2,4:2.64904710519;FOX{F1,F2,J1}:2.63598340109;BPTF:2.4754705531;T:2.44518272175;RFX1:2.38439464359;NFKB1_REL_RELA:2.27292644584;DMAP1_NCOR{1,2}_SMARC:2.1501130154;PITX1..3:2.14197759243;ETS1,2:2.10454812661;PAX2:2.0968287398;TBX4,5:2.0908599006;JUN:1.99962778634;HMX1:1.89546662281;TGIF1:1.80250631952;FOXP1:1.74085143054;SPI1:1.60266257228;ATF2:1.47456877986;ATF6:1.44132204818;LEF1_TCF7_TCF7L1,2:1.41981657358;HIF1A:1.31751301886;IRF1,2:1.30754387281;TLX2:1.2990406982;BREu{core}:1.23507152576;NKX2-1,4:1.19550165057;CDX1,2,4:1.17632743801;SPIB:1.15669055422;ZBTB16:1.12438208172;IKZF2:1.05747912754;PAX6:1.04488671771;FOX{I1,J2}:0.996354290082;ELK1,4_GABP{A,B1}:0.904436492712;PAX4:0.835992372998;GATA6:0.825340005708;PPARG:0.77881498675;NKX6-1,2:0.775606502006;NANOG{mouse}:0.613125234483;ZNF384:0.602266957949;EP300:0.580606328728;NFATC1..3:0.574730227209;MYB:0.552104810246;EGR1..3:0.550306040939;FOSL2:0.546632251782;SOX2:0.480332531686;HBP1_HMGB_SSRP1_UBTF:0.46633841802;MAFB:0.437430721428;IRF7:0.422464070285;HOX{A6,A7,B6,B7}:0.3292432712;TFDP1:0.298795549204;RREB1:0.276388415184;SMAD1..7,9:0.256607040191;FOS_FOS{B,L1}_JUN{B,D}:0.249299263637;SREBF1,2:0.223670819177;NFIX:0.20392934323;HMGA1,2:0.129210436867;NFY{A,B,C}:0.0638106026285;PDX1:0.0597262563478;NFIL3:0.0588969352109;BACH2:0.0335258926751;ZEB1:0.0247541657884;MYFfamily:-0.0183699640965;NFE2L1:-0.0441836939011;AHR_ARNT_ARNT2:-0.0525890636833;CUX2:-0.0528015395477;SNAI1..3:-0.0651736069769;STAT2,4,6:-0.0792981893187;FOXA2:-0.105411446845;SOX5:-0.118712089487;TOPORS:-0.119423915518;NFE2:-0.146574422336;NKX3-1:-0.173915293274;AIRE:-0.178876926028;FOXP3:-0.178962643053;TAL1_TCF{3,4,12}:-0.187074315645;CRX:-0.187842952767;MTE{core}:-0.201079416296;NRF1:-0.248079557233;PRRX1,2:-0.258762674316;POU2F1..3:-0.281604308786;MED-1{core}:-0.295698657875;NANOG:-0.309148171848;NR5A1,2:-0.311759732007;PBX1:-0.353705939486;STAT5{A,B}:-0.364391427322;E2F1..5:-0.374663941742;CEBPA,B_DDIT3:-0.378178933837;EVI1:-0.378221761157;FOXL1:-0.39002092737;AR:-0.396527174725;MYOD1:-0.410802810158;HLF:-0.422329202491;NFE2L2:-0.424407172678;GCM1,2:-0.432837541501;YY1:-0.453822103751;RXRA_VDR{dimer}:-0.45940105263;ZFP161:-0.470660085674;PAX5:-0.4745519662;FOXQ1:-0.484169442246;TFAP4:-0.488477863286;MTF1:-0.489617435184;SRF:-0.545197761712;HES1:-0.550797102322;TFAP2B:-0.552669417511;NHLH1,2:-0.563672909606;LMO2:-0.569760460712;GLI1..3:-0.620120671108;HNF1A:-0.643925344766;bHLH_family:-0.646895753239;HNF4A_NR2F1,2:-0.691178235511;XBP1:-0.696925839933;ALX4:-0.713804966394;STAT1,3:-0.720417762312;RBPJ:-0.724254377751;ZBTB6:-0.73213981687;FOXD3:-0.733157340239;PATZ1:-0.751191086236;HOXA9_MEIS1:-0.758866802;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.760097648724;MZF1:-0.764149546016;SPZ1:-0.786017939671;MAZ:-0.794866428704;ZNF148:-0.803516143169;NKX2-2,8:-0.812156823675;ZNF143:-0.838486438955;DBP:-0.854778641283;REST:-0.905132442149;ZNF423:-0.910697712511;FOXM1:-0.917733744615;ZIC1..3:-0.918948137609;VSX1,2:-0.921329762143;HSF1,2:-0.925237097507;SOX{8,9,10}:-0.954051078553;OCT4_SOX2{dimer}:-0.974742861286;SOX17:-0.987104174615;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.998295020036;HAND1,2:-1.06145128232;GFI1:-1.07193549135;POU1F1:-1.08522036868;MEF2{A,B,C,D}:-1.09991761256;HIC1:-1.11155000824;TFAP2{A,C}:-1.13875886353;SP1:-1.17060416333;ALX1:-1.19876491567;ZNF238:-1.23010887498;LHX3,4:-1.23947816499;POU6F1:-1.24979204411;GATA4:-1.29660511963;TFCP2:-1.30440419833;NR1H4:-1.36456303545;ARID5B:-1.40032101548;MYBL2:-1.41175490315;TBP:-1.4286251916;TP53:-1.4671186094;RXR{A,B,G}:-1.47332441016;POU5F1:-1.47686002173;UFEwm:-1.52400777129;CDC5L:-1.54615323175;XCPE1{core}:-1.58323153571;TEF:-1.59647433466;NKX2-3_NKX2-5:-1.65299420261;HOX{A5,B5}:-1.66301440093;GTF2I:-1.66890364307;GTF2A1,2:-1.67546367699;ESRRA:-1.68740163636;GFI1B:-1.73433725861;TEAD1:-1.79340222042;TLX1..3_NFIC{dimer}:-1.82132086224;ADNP_IRX_SIX_ZHX:-1.89015706268;POU3F1..4:-1.91695830848;PAX8:-1.9490270473;EN1,2:-2.00047072706;PRDM1:-2.04231831714;HOX{A4,D4}:-2.08460468431;GZF1:-2.09584265112;ONECUT1,2:-2.16501279144;NR6A1:-2.18857802588;EBF1:-2.35065207729;ESR1:-2.37072897289;KLF4:-2.38087518037;NKX3-2:-2.52752922159;IKZF1:-2.65005295601;PAX1,9:-2.66811734421;NR3C1:-3.19153879684 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11226-116C2;search_select_hide=table117:FF:11226-116C2 | |||
}} | }} | ||
Latest revision as of 16:25, 3 June 2020
| Name: | CD8+ T Cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10854,SRhi10010.TTAGGC |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10854
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10854
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.817 |
| 10 | 10 | 0.0236 |
| 100 | 100 | 0.931 |
| 101 | 101 | 0.445 |
| 102 | 102 | 0.945 |
| 103 | 103 | 0.328 |
| 104 | 104 | 0.839 |
| 105 | 105 | 0.606 |
| 106 | 106 | 0.377 |
| 107 | 107 | 0.0142 |
| 108 | 108 | 0.432 |
| 109 | 109 | 0.978 |
| 11 | 11 | 0.984 |
| 110 | 110 | 0.188 |
| 111 | 111 | 0.715 |
| 112 | 112 | 0.726 |
| 113 | 113 | 0.314 |
| 114 | 114 | 0.868 |
| 115 | 115 | 0.284 |
| 116 | 116 | 0.112 |
| 117 | 117 | 0.0162 |
| 118 | 118 | 0.644 |
| 119 | 119 | 0.197 |
| 12 | 12 | 0.57 |
| 120 | 120 | 0.262 |
| 121 | 121 | 0.681 |
| 122 | 122 | 0.866 |
| 123 | 123 | 8.73851e-4 |
| 124 | 124 | 0.788 |
| 125 | 125 | 0.432 |
| 126 | 126 | 0.826 |
| 127 | 127 | 0.658 |
| 128 | 128 | 0.765 |
| 129 | 129 | 0.171 |
| 13 | 13 | 0.625 |
| 130 | 130 | 0.317 |
| 131 | 131 | 0.219 |
| 132 | 132 | 0.137 |
| 133 | 133 | 0.943 |
| 134 | 134 | 0.662 |
| 135 | 135 | 0.344 |
| 136 | 136 | 0.933 |
| 137 | 137 | 0.0643 |
| 138 | 138 | 0.727 |
| 139 | 139 | 0.197 |
| 14 | 14 | 0.575 |
| 140 | 140 | 0.946 |
| 141 | 141 | 0.687 |
| 142 | 142 | 0.356 |
| 143 | 143 | 0.0188 |
| 144 | 144 | 0.864 |
| 145 | 145 | 0.462 |
| 146 | 146 | 0.467 |
| 147 | 147 | 0.0165 |
| 148 | 148 | 0.474 |
| 149 | 149 | 0.108 |
| 15 | 15 | 0.456 |
| 150 | 150 | 0.975 |
| 151 | 151 | 0.701 |
| 152 | 152 | 0.725 |
| 153 | 153 | 0.539 |
| 154 | 154 | 0.182 |
| 155 | 155 | 0.0613 |
| 156 | 156 | 0.999 |
| 157 | 157 | 0.571 |
| 158 | 158 | 0.00776 |
| 159 | 159 | 0.764 |
| 16 | 16 | 0.172 |
| 160 | 160 | 0.0144 |
| 161 | 161 | 0.73 |
| 162 | 162 | 0.00913 |
| 163 | 163 | 0.879 |
| 164 | 164 | 0.17 |
| 165 | 165 | 0.811 |
| 166 | 166 | 0.276 |
| 167 | 167 | 0.172 |
| 168 | 168 | 0.578 |
| 169 | 169 | 0.0833 |
| 17 | 17 | 0.507 |
| 18 | 18 | 0.599 |
| 19 | 19 | 0.0163 |
| 2 | 2 | 0.147 |
| 20 | 20 | 0.152 |
| 21 | 21 | 0.711 |
| 22 | 22 | 0.162 |
| 23 | 23 | 0.528 |
| 24 | 24 | 0.557 |
| 25 | 25 | 0.217 |
| 26 | 26 | 0.651 |
| 27 | 27 | 0.497 |
| 28 | 28 | 0.361 |
| 29 | 29 | 0.11 |
| 3 | 3 | 0.828 |
| 30 | 30 | 0.0643 |
| 31 | 31 | 0.534 |
| 32 | 32 | 0.00255 |
| 33 | 33 | 0.411 |
| 34 | 34 | 0.311 |
| 35 | 35 | 0.486 |
| 36 | 36 | 0.137 |
| 37 | 37 | 0.52 |
| 38 | 38 | 0.496 |
| 39 | 39 | 0.38 |
| 4 | 4 | 0.634 |
| 40 | 40 | 0.772 |
| 41 | 41 | 0.13 |
| 42 | 42 | 0.437 |
| 43 | 43 | 0.818 |
| 44 | 44 | 0.596 |
| 45 | 45 | 0.127 |
| 46 | 46 | 0.773 |
| 47 | 47 | 0.875 |
| 48 | 48 | 0.802 |
| 49 | 49 | 0.382 |
| 5 | 5 | 0.725 |
| 50 | 50 | 0.476 |
| 51 | 51 | 0.843 |
| 52 | 52 | 0.774 |
| 53 | 53 | 0.381 |
| 54 | 54 | 0.84 |
| 55 | 55 | 0.524 |
| 56 | 56 | 0.716 |
| 57 | 57 | 0.683 |
| 58 | 58 | 0.244 |
| 59 | 59 | 0.144 |
| 6 | 6 | 0.852 |
| 60 | 60 | 0.738 |
| 61 | 61 | 0.289 |
| 62 | 62 | 0.437 |
| 63 | 63 | 0.649 |
| 64 | 64 | 0.86 |
| 65 | 65 | 0.334 |
| 66 | 66 | 0.68 |
| 67 | 67 | 0.397 |
| 68 | 68 | 0.716 |
| 69 | 69 | 0.732 |
| 7 | 7 | 0.837 |
| 70 | 70 | 0.398 |
| 71 | 71 | 0.468 |
| 72 | 72 | 0.46 |
| 73 | 73 | 0.716 |
| 74 | 74 | 0.764 |
| 75 | 75 | 0.0859 |
| 76 | 76 | 0.179 |
| 77 | 77 | 0.00134 |
| 78 | 78 | 0.93 |
| 79 | 79 | 0.95 |
| 8 | 8 | 0.197 |
| 80 | 80 | 0.0248 |
| 81 | 81 | 0.755 |
| 82 | 82 | 0.849 |
| 83 | 83 | 0.769 |
| 84 | 84 | 0.204 |
| 85 | 85 | 0.89 |
| 86 | 86 | 0.0743 |
| 87 | 87 | 0.993 |
| 88 | 88 | 0.894 |
| 89 | 89 | 0.00213 |
| 9 | 9 | 0.733 |
| 90 | 90 | 0.936 |
| 91 | 91 | 0.918 |
| 92 | 92 | 0.695 |
| 93 | 93 | 0.983 |
| 94 | 94 | 0.392 |
| 95 | 95 | 0.28 |
| 96 | 96 | 0.866 |
| 97 | 97 | 0.311 |
| 98 | 98 | 0.775 |
| 99 | 99 | 1.38602e-6 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10854
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000030 CD8-positive T cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)
