FF:11225-116C1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005494 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005494 | ||
|accession_numbers=CAGE;DRX008176;DRR009048;DRZ000473;DRZ001858;DRZ011823;DRZ013208 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037129;DRR041495;DRZ007137 | |||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000624 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000031 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor1.CNhs10853.11225-116C1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor1.CNhs10853.11225-116C1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor1.CNhs10853.11225-116C1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor1.CNhs10853.11225-116C1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor1.CNhs10853.11225-116C1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11225-116C1 | |id=FF:11225-116C1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000031;;FF:0000210 | ||
|is_obsolete= | |||
|library_id=CNhs10853 | |||
|library_id_phase_based=2:CNhs10853 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11225 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.TTAGGC.11225 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11225 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.TTAGGC.11225 | |||
|name=CD4+ T Cells, donor1 | |name=CD4+ T Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10853,LSID702,release008,COMPLETED | |profile_hcage=CNhs10853,LSID702,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10009,,, | |profile_srnaseq=SRhi10009,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=3H100-23-10 | |rna_catalog_number=3H100-23-10 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116C1 | |rna_tube_id=116C1 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10009.TTAGGC | |||
|sample_age=53 | |sample_age=53 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.67830775436497e-234!GO:0043227;membrane-bound organelle;5.09328005709523e-204!GO:0043231;intracellular membrane-bound organelle;1.27731901046886e-203!GO:0043226;organelle;4.00781816345737e-195!GO:0043229;intracellular organelle;2.46126425004667e-194!GO:0005634;nucleus;6.45605171018702e-131!GO:0005737;cytoplasm;5.22657268350088e-120!GO:0043170;macromolecule metabolic process;8.75262203360311e-113!GO:0044422;organelle part;3.21620255651963e-109!GO:0044446;intracellular organelle part;1.50882168203723e-107!GO:0044237;cellular metabolic process;5.01605681765697e-105!GO:0044238;primary metabolic process;1.55974368333456e-102!GO:0043283;biopolymer metabolic process;1.41395234801858e-89!GO:0044428;nuclear part;4.86056534034216e-87!GO:0003723;RNA binding;9.40804860109554e-86!GO:0032991;macromolecular complex;1.05484117392753e-84!GO:0010467;gene expression;1.78829049087298e-76!GO:0030529;ribonucleoprotein complex;3.16321454525919e-76!GO:0044444;cytoplasmic part;8.41528825618312e-71!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.75828678776383e-70!GO:0043233;organelle lumen;3.83843209994817e-67!GO:0031974;membrane-enclosed lumen;3.83843209994817e-67!GO:0005515;protein binding;1.38067678126121e-61!GO:0003676;nucleic acid binding;1.12153382494647e-58!GO:0031981;nuclear lumen;1.69738438713332e-56!GO:0006396;RNA processing;3.26196000887381e-55!GO:0019538;protein metabolic process;8.66708011644941e-49!GO:0033036;macromolecule localization;2.25314156688117e-48!GO:0016070;RNA metabolic process;4.98866391998405e-48!GO:0016071;mRNA metabolic process;7.19969461150341e-48!GO:0044267;cellular protein metabolic process;1.89539004850588e-47!GO:0044260;cellular macromolecule metabolic process;1.61013633123805e-46!GO:0006412;translation;2.38897876656618e-46!GO:0015031;protein transport;9.71457037708077e-46!GO:0045184;establishment of protein localization;1.39627181629864e-43!GO:0008104;protein localization;1.45347112377142e-43!GO:0043234;protein complex;1.99623787756121e-41!GO:0008380;RNA splicing;4.91183192885101e-41!GO:0006397;mRNA processing;4.74715575289606e-40!GO:0005840;ribosome;2.20856332496756e-38!GO:0005739;mitochondrion;2.5349295036251e-36!GO:0005654;nucleoplasm;7.28926187442885e-36!GO:0006259;DNA metabolic process;2.16240875008728e-35!GO:0016043;cellular component organization and biogenesis;7.31469202014905e-34!GO:0046907;intracellular transport;8.94224916788347e-34!GO:0009059;macromolecule biosynthetic process;9.45908239341695e-34!GO:0003735;structural constituent of ribosome;3.73958449253914e-33!GO:0006886;intracellular protein transport;6.36869971215138e-32!GO:0000166;nucleotide binding;1.91605663007306e-31!GO:0031090;organelle membrane;2.19721956953234e-31!GO:0033279;ribosomal subunit;1.00914467198752e-30!GO:0005681;spliceosome;1.05270012151418e-30!GO:0006512;ubiquitin cycle;1.06689380504384e-29!GO:0031967;organelle envelope;1.61998369712296e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.62558511975823e-29!GO:0065003;macromolecular complex assembly;2.69166094756072e-29!GO:0031975;envelope;3.21148224698459e-29!GO:0005829;cytosol;3.27175369402543e-29!GO:0044451;nucleoplasm part;4.55829087126381e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.82063518767275e-28!GO:0006996;organelle organization and biogenesis;3.73053711740068e-27!GO:0022607;cellular component assembly;1.33429904336952e-26!GO:0044429;mitochondrial part;2.83562832265316e-26!GO:0043412;biopolymer modification;4.94537017941023e-25!GO:0044445;cytosolic part;2.57497728634595e-24!GO:0051641;cellular localization;5.71660294366515e-24!GO:0051649;establishment of cellular localization;1.30797667367666e-23!GO:0044249;cellular biosynthetic process;6.32923122210305e-23!GO:0050794;regulation of cellular process;6.59743057528658e-23!GO:0009058;biosynthetic process;1.09189743584991e-22!GO:0032553;ribonucleotide binding;3.36687911036353e-22!GO:0032555;purine ribonucleotide binding;3.36687911036353e-22!GO:0006464;protein modification process;5.45218056867346e-22!GO:0017111;nucleoside-triphosphatase activity;1.0702644825692e-21!GO:0016462;pyrophosphatase activity;1.66186302417315e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.66686384006639e-21!GO:0043687;post-translational protein modification;1.90723930920268e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;2.10952593801138e-21!GO:0005730;nucleolus;2.38078645824561e-21!GO:0051603;proteolysis involved in cellular protein catabolic process;2.72264892351773e-21!GO:0019941;modification-dependent protein catabolic process;2.72264892351773e-21!GO:0043632;modification-dependent macromolecule catabolic process;2.72264892351773e-21!GO:0008134;transcription factor binding;3.58347246349894e-21!GO:0006511;ubiquitin-dependent protein catabolic process;3.58347246349894e-21!GO:0017076;purine nucleotide binding;4.92399855623525e-21!GO:0016874;ligase activity;7.0156280562002e-21!GO:0019222;regulation of metabolic process;9.12001635114154e-21!GO:0044257;cellular protein catabolic process;9.15711822272879e-21!GO:0043228;non-membrane-bound organelle;1.63401094529854e-20!GO:0043232;intracellular non-membrane-bound organelle;1.63401094529854e-20!GO:0044265;cellular macromolecule catabolic process;2.92153775649755e-20!GO:0016604;nuclear body;4.40067732055227e-20!GO:0012501;programmed cell death;4.59738233041018e-20!GO:0006915;apoptosis;6.20775351632606e-20!GO:0051276;chromosome organization and biogenesis;1.15954676342857e-19!GO:0006325;establishment and/or maintenance of chromatin architecture;1.22897194475163e-19!GO:0008219;cell death;2.90576207303206e-19!GO:0016265;death;2.90576207303206e-19!GO:0022618;protein-RNA complex assembly;3.45745187018634e-19!GO:0006605;protein targeting;4.50040008597933e-19!GO:0005524;ATP binding;5.70252561896816e-19!GO:0006323;DNA packaging;8.10937749234713e-19!GO:0006913;nucleocytoplasmic transport;9.58058808569986e-19!GO:0051169;nuclear transport;1.92290807989378e-18!GO:0007049;cell cycle;2.41109846994778e-18!GO:0032559;adenyl ribonucleotide binding;2.44983332863458e-18!GO:0031323;regulation of cellular metabolic process;3.00868387418636e-18!GO:0043285;biopolymer catabolic process;5.20313547361927e-18!GO:0006350;transcription;9.22406765037236e-18!GO:0006974;response to DNA damage stimulus;1.18019688600705e-17!GO:0016607;nuclear speck;3.63001685039741e-17!GO:0008135;translation factor activity, nucleic acid binding;4.06938412493932e-17!GO:0030554;adenyl nucleotide binding;5.29807573009147e-17!GO:0005740;mitochondrial envelope;7.37848517001564e-17!GO:0031966;mitochondrial membrane;1.82921838312465e-16!GO:0050789;regulation of biological process;1.92640777795769e-16!GO:0010468;regulation of gene expression;2.57696913434377e-16!GO:0015935;small ribosomal subunit;4.27526336092505e-16!GO:0015934;large ribosomal subunit;1.29404229049635e-15!GO:0004386;helicase activity;1.47863317940093e-15!GO:0019866;organelle inner membrane;2.26365225785031e-15!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.10981043081534e-15!GO:0016568;chromatin modification;4.26434994909503e-15!GO:0006281;DNA repair;5.21930124013458e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.16193164908235e-15!GO:0009057;macromolecule catabolic process;9.92211103234989e-15!GO:0016887;ATPase activity;1.0393730600316e-14!GO:0032774;RNA biosynthetic process;1.5045591024259e-14!GO:0006351;transcription, DNA-dependent;1.74753770897939e-14!GO:0006119;oxidative phosphorylation;1.77120514384392e-14!GO:0042623;ATPase activity, coupled;1.9216217532343e-14!GO:0030163;protein catabolic process;2.57472898008813e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;2.69580911277409e-14!GO:0000375;RNA splicing, via transesterification reactions;2.69580911277409e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.69580911277409e-14!GO:0008270;zinc ion binding;3.69728047961099e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.86928066163169e-14!GO:0005635;nuclear envelope;7.18049143975186e-14!GO:0042981;regulation of apoptosis;9.45617123256085e-14!GO:0045449;regulation of transcription;1.29068727978996e-13!GO:0031965;nuclear membrane;1.48063612635442e-13!GO:0043067;regulation of programmed cell death;1.52379335207177e-13!GO:0008026;ATP-dependent helicase activity;2.70611778535812e-13!GO:0005743;mitochondrial inner membrane;2.71114641656292e-13!GO:0012505;endomembrane system;2.75401565417774e-13!GO:0044453;nuclear membrane part;4.66956023965824e-13!GO:0022402;cell cycle process;6.39318815860631e-13!GO:0003712;transcription cofactor activity;7.03402878792185e-13!GO:0017038;protein import;7.03402878792185e-13!GO:0005694;chromosome;9.03128409543383e-13!GO:0050657;nucleic acid transport;1.27290241608723e-12!GO:0051236;establishment of RNA localization;1.27290241608723e-12!GO:0050658;RNA transport;1.27290241608723e-12!GO:0006403;RNA localization;1.54442206734684e-12!GO:0006457;protein folding;1.59843122263882e-12!GO:0006413;translational initiation;2.2546075519636e-12!GO:0003743;translation initiation factor activity;2.31315079208892e-12!GO:0006366;transcription from RNA polymerase II promoter;2.79353015817583e-12!GO:0008639;small protein conjugating enzyme activity;2.79564944470231e-12!GO:0004842;ubiquitin-protein ligase activity;3.16645367632677e-12!GO:0006355;regulation of transcription, DNA-dependent;3.75996848790493e-12!GO:0051726;regulation of cell cycle;7.16237766637663e-12!GO:0005643;nuclear pore;8.50569965490866e-12!GO:0044455;mitochondrial membrane part;8.9961977946857e-12!GO:0065004;protein-DNA complex assembly;9.40271032374522e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.07522829110019e-11!GO:0031980;mitochondrial lumen;1.22313346345458e-11!GO:0005759;mitochondrial matrix;1.22313346345458e-11!GO:0000074;regulation of progression through cell cycle;1.24427620066145e-11!GO:0019787;small conjugating protein ligase activity;1.54003595332311e-11!GO:0044248;cellular catabolic process;1.87396545667273e-11!GO:0006333;chromatin assembly or disassembly;2.08371540671245e-11!GO:0006446;regulation of translational initiation;2.71549719198983e-11!GO:0042254;ribosome biogenesis and assembly;3.37794402219643e-11!GO:0065007;biological regulation;7.8662978457508e-11!GO:0006793;phosphorus metabolic process;7.87811160099906e-11!GO:0006796;phosphate metabolic process;7.87811160099906e-11!GO:0009719;response to endogenous stimulus;9.19834094317759e-11!GO:0003677;DNA binding;1.17611338434762e-10!GO:0051028;mRNA transport;1.23408602646452e-10!GO:0044427;chromosomal part;1.40222795095747e-10!GO:0051170;nuclear import;2.62074096011114e-10!GO:0006606;protein import into nucleus;3.31063164219274e-10!GO:0048523;negative regulation of cellular process;5.02935232639198e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.42604905696974e-10!GO:0005746;mitochondrial respiratory chain;7.70552828311541e-10!GO:0048193;Golgi vesicle transport;9.30575825700895e-10!GO:0051082;unfolded protein binding;1.03407749124961e-09!GO:0016310;phosphorylation;1.57522039688635e-09!GO:0046914;transition metal ion binding;1.68661461676416e-09!GO:0043566;structure-specific DNA binding;1.68661461676416e-09!GO:0046930;pore complex;1.74353248356496e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.93962457240856e-09!GO:0007243;protein kinase cascade;2.17812935891642e-09!GO:0016881;acid-amino acid ligase activity;2.47988326764338e-09!GO:0005794;Golgi apparatus;2.7673605323248e-09!GO:0003713;transcription coactivator activity;3.10339393378406e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.15511375717297e-09!GO:0048770;pigment granule;4.56978557773825e-09!GO:0042470;melanosome;4.56978557773825e-09!GO:0050136;NADH dehydrogenase (quinone) activity;5.30040380259379e-09!GO:0003954;NADH dehydrogenase activity;5.30040380259379e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.30040380259379e-09!GO:0016563;transcription activator activity;8.42790210171432e-09!GO:0000785;chromatin;9.08904432611474e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.31146143683628e-08!GO:0003697;single-stranded DNA binding;1.49025682863555e-08!GO:0048519;negative regulation of biological process;1.57992656147129e-08!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.79807736393964e-08!GO:0065002;intracellular protein transport across a membrane;1.9649520636089e-08!GO:0045786;negative regulation of progression through cell cycle;2.07746834975511e-08!GO:0031324;negative regulation of cellular metabolic process;2.07975348202051e-08!GO:0016072;rRNA metabolic process;3.09034953538204e-08!GO:0032446;protein modification by small protein conjugation;3.51185295389421e-08!GO:0042775;organelle ATP synthesis coupled electron transport;3.62471012618023e-08!GO:0042773;ATP synthesis coupled electron transport;3.62471012618023e-08!GO:0016192;vesicle-mediated transport;3.77713337446696e-08!GO:0005768;endosome;3.98708340620588e-08!GO:0006364;rRNA processing;4.01071258010947e-08!GO:0016564;transcription repressor activity;5.93023353215647e-08!GO:0065009;regulation of a molecular function;6.02921707985973e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.11613608716907e-08!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.94116149252713e-08!GO:0016567;protein ubiquitination;9.71882845553726e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.05538021930563e-07!GO:0051246;regulation of protein metabolic process;1.05538021930563e-07!GO:0008565;protein transporter activity;1.16081336838551e-07!GO:0000151;ubiquitin ligase complex;1.26330489554431e-07!GO:0030964;NADH dehydrogenase complex (quinone);1.26718581678416e-07!GO:0045271;respiratory chain complex I;1.26718581678416e-07!GO:0005747;mitochondrial respiratory chain complex I;1.26718581678416e-07!GO:0019829;cation-transporting ATPase activity;1.37546374547917e-07!GO:0006399;tRNA metabolic process;1.48496467911404e-07!GO:0051168;nuclear export;1.75385196209559e-07!GO:0016740;transferase activity;1.90840392953692e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.08664469902247e-07!GO:0004674;protein serine/threonine kinase activity;2.23047158058672e-07!GO:0019899;enzyme binding;2.43934992930601e-07!GO:0009892;negative regulation of metabolic process;2.47433417741074e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.96169484313772e-07!GO:0016481;negative regulation of transcription;2.97621548049117e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.23335394197984e-07!GO:0006260;DNA replication;3.29155374928494e-07!GO:0003724;RNA helicase activity;4.36556096126098e-07!GO:0016787;hydrolase activity;4.90377222080074e-07!GO:0007242;intracellular signaling cascade;5.08385530968098e-07!GO:0006916;anti-apoptosis;6.76872153591802e-07!GO:0031497;chromatin assembly;7.16170654494686e-07!GO:0043069;negative regulation of programmed cell death;7.42054455395069e-07!GO:0030532;small nuclear ribonucleoprotein complex;8.22410259269095e-07!GO:0006334;nucleosome assembly;8.99692840445259e-07!GO:0005761;mitochondrial ribosome;9.84322846470149e-07!GO:0000313;organellar ribosome;9.84322846470149e-07!GO:0043066;negative regulation of apoptosis;1.08335689948756e-06!GO:0000278;mitotic cell cycle;1.20029041869443e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.26981055545181e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.27430889576567e-06!GO:0051186;cofactor metabolic process;1.86489091833904e-06!GO:0009259;ribonucleotide metabolic process;2.05835255057956e-06!GO:0006917;induction of apoptosis;2.25412806785038e-06!GO:0009260;ribonucleotide biosynthetic process;2.84684851807856e-06!GO:0043065;positive regulation of apoptosis;2.89290266497395e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.92063160810667e-06!GO:0000245;spliceosome assembly;3.01987551086739e-06!GO:0016363;nuclear matrix;3.47487605445539e-06!GO:0012502;induction of programmed cell death;3.55016432583859e-06!GO:0006401;RNA catabolic process;4.27776713558119e-06!GO:0043068;positive regulation of programmed cell death;4.43315900229704e-06!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.98631558629026e-06!GO:0006402;mRNA catabolic process;5.65834186195137e-06!GO:0006164;purine nucleotide biosynthetic process;5.85990933704649e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.89549979703295e-06!GO:0004812;aminoacyl-tRNA ligase activity;5.89549979703295e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.89549979703295e-06!GO:0009060;aerobic respiration;6.30570430202006e-06!GO:0015986;ATP synthesis coupled proton transport;6.45655479088543e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.45655479088543e-06!GO:0009152;purine ribonucleotide biosynthetic process;6.58395838660279e-06!GO:0003924;GTPase activity;7.02354191044224e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.22587319003612e-06!GO:0016779;nucleotidyltransferase activity;7.23909812611704e-06!GO:0044432;endoplasmic reticulum part;9.25127060304706e-06!GO:0006163;purine nucleotide metabolic process;1.09873126826753e-05!GO:0005525;GTP binding;1.11938288464577e-05!GO:0043038;amino acid activation;1.33058987114129e-05!GO:0006418;tRNA aminoacylation for protein translation;1.33058987114129e-05!GO:0043039;tRNA aminoacylation;1.33058987114129e-05!GO:0009150;purine ribonucleotide metabolic process;1.34921441455616e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.43466414890869e-05!GO:0008186;RNA-dependent ATPase activity;1.62169409709738e-05!GO:0006461;protein complex assembly;1.63989564746045e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.65257802384803e-05!GO:0005813;centrosome;1.66161376928157e-05!GO:0006417;regulation of translation;1.69951583078348e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.74164681988423e-05!GO:0006352;transcription initiation;2.16031469171074e-05!GO:0005789;endoplasmic reticulum membrane;2.46517095081451e-05!GO:0009056;catabolic process;2.62703421335774e-05!GO:0008234;cysteine-type peptidase activity;2.71657587301013e-05!GO:0006732;coenzyme metabolic process;2.86339256021985e-05!GO:0045259;proton-transporting ATP synthase complex;3.60817826767577e-05!GO:0006754;ATP biosynthetic process;3.89068537814247e-05!GO:0006753;nucleoside phosphate metabolic process;3.89068537814247e-05!GO:0019783;small conjugating protein-specific protease activity;3.92176880553456e-05!GO:0003690;double-stranded DNA binding;4.02187384591202e-05!GO:0004298;threonine endopeptidase activity;4.32517975940089e-05!GO:0048475;coated membrane;4.79335253614258e-05!GO:0030117;membrane coat;4.79335253614258e-05!GO:0004004;ATP-dependent RNA helicase activity;5.13240398606985e-05!GO:0060090;molecular adaptor activity;5.14416830696795e-05!GO:0045333;cellular respiration;5.20919689242218e-05!GO:0006613;cotranslational protein targeting to membrane;5.20919689242218e-05!GO:0031326;regulation of cellular biosynthetic process;5.69334907571819e-05!GO:0003729;mRNA binding;5.9258335436308e-05!GO:0005783;endoplasmic reticulum;6.18353656191301e-05!GO:0016469;proton-transporting two-sector ATPase complex;6.3211278857073e-05!GO:0004843;ubiquitin-specific protease activity;6.3893422007837e-05!GO:0005815;microtubule organizing center;6.73682846894097e-05!GO:0006310;DNA recombination;6.92886556104619e-05!GO:0016251;general RNA polymerase II transcription factor activity;7.28807673341974e-05!GO:0005793;ER-Golgi intermediate compartment;7.92928250500187e-05!GO:0009142;nucleoside triphosphate biosynthetic process;7.98920751148574e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.98920751148574e-05!GO:0046034;ATP metabolic process;8.20761639022357e-05!GO:0048522;positive regulation of cellular process;8.31140475847902e-05!GO:0030120;vesicle coat;8.33224818987023e-05!GO:0030662;coated vesicle membrane;8.33224818987023e-05!GO:0007264;small GTPase mediated signal transduction;8.76139144362783e-05!GO:0051427;hormone receptor binding;9.78161913705919e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;9.82128929129904e-05!GO:0015399;primary active transmembrane transporter activity;9.82128929129904e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;9.86705522945993e-05!GO:0009199;ribonucleoside triphosphate metabolic process;0.000110243945062022!GO:0009615;response to virus;0.000113816964656768!GO:0044440;endosomal part;0.000114595963706633!GO:0010008;endosome membrane;0.000114595963706633!GO:0022403;cell cycle phase;0.000114962425171141!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000127696094269132!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000127696094269132!GO:0045892;negative regulation of transcription, DNA-dependent;0.000130505399106175!GO:0004221;ubiquitin thiolesterase activity;0.000141902119903864!GO:0030695;GTPase regulator activity;0.00014420257014549!GO:0007005;mitochondrion organization and biogenesis;0.000146033254675897!GO:0032561;guanyl ribonucleotide binding;0.000147618378928026!GO:0019001;guanyl nucleotide binding;0.000147618378928026!GO:0007265;Ras protein signal transduction;0.000153040099016795!GO:0015630;microtubule cytoskeleton;0.000154396538104805!GO:0050790;regulation of catalytic activity;0.000155199615239289!GO:0043623;cellular protein complex assembly;0.000157244214718981!GO:0051188;cofactor biosynthetic process;0.000160394945003537!GO:0005769;early endosome;0.000161759024526376!GO:0003714;transcription corepressor activity;0.000166639961004141!GO:0044431;Golgi apparatus part;0.000167322363105599!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000170951580853833!GO:0009144;purine nucleoside triphosphate metabolic process;0.000170951580853833!GO:0035257;nuclear hormone receptor binding;0.000172237672314239!GO:0009141;nucleoside triphosphate metabolic process;0.000183795202400141!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000192182426364968!GO:0005667;transcription factor complex;0.000202082106200367!GO:0006607;NLS-bearing substrate import into nucleus;0.000204513032397894!GO:0006261;DNA-dependent DNA replication;0.000243671162473413!GO:0005083;small GTPase regulator activity;0.000304548812763225!GO:0015631;tubulin binding;0.000317409440513201!GO:0006612;protein targeting to membrane;0.000347176483471188!GO:0006099;tricarboxylic acid cycle;0.0003549105460355!GO:0046356;acetyl-CoA catabolic process;0.0003549105460355!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000371988649372293!GO:0005770;late endosome;0.000375770662516821!GO:0006338;chromatin remodeling;0.000499484627209393!GO:0009889;regulation of biosynthetic process;0.000509126254332592!GO:0006611;protein export from nucleus;0.000532387783729664!GO:0009108;coenzyme biosynthetic process;0.000542260780644924!GO:0003725;double-stranded RNA binding;0.00054586437741947!GO:0043492;ATPase activity, coupled to movement of substances;0.000571223587042193!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000577578197918484!GO:0042110;T cell activation;0.000602406168947999!GO:0008017;microtubule binding;0.000602406168947999!GO:0008654;phospholipid biosynthetic process;0.000604504593456379!GO:0006084;acetyl-CoA metabolic process;0.000614744985425141!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000627346537003014!GO:0006405;RNA export from nucleus;0.000652293620273578!GO:0030384;phosphoinositide metabolic process;0.000682234040944537!GO:0031072;heat shock protein binding;0.000684320970004698!GO:0000087;M phase of mitotic cell cycle;0.000684462829319738!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000702842611052228!GO:0051301;cell division;0.000722829619514218!GO:0048471;perinuclear region of cytoplasm;0.000761293111164951!GO:0009966;regulation of signal transduction;0.000766563134724861!GO:0016301;kinase activity;0.000771176761835677!GO:0006891;intra-Golgi vesicle-mediated transport;0.00078060603140682!GO:0007050;cell cycle arrest;0.000784180734264486!GO:0005773;vacuole;0.000802782586836252!GO:0003682;chromatin binding;0.000855588849829595!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00085854665295305!GO:0009967;positive regulation of signal transduction;0.000913730052611309!GO:0008047;enzyme activator activity;0.000928281822956402!GO:0046966;thyroid hormone receptor binding;0.000966006934939139!GO:0008632;apoptotic program;0.000974793625081649!GO:0016197;endosome transport;0.00101003591917447!GO:0008022;protein C-terminus binding;0.00101263786037845!GO:0007067;mitosis;0.00104286727526087!GO:0044452;nucleolar part;0.00108545322463631!GO:0003746;translation elongation factor activity;0.00111464973465037!GO:0031625;ubiquitin protein ligase binding;0.00121193864859205!GO:0006752;group transfer coenzyme metabolic process;0.00123435280497467!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00131184921786324!GO:0005885;Arp2/3 protein complex;0.00132062475647201!GO:0051090;regulation of transcription factor activity;0.00134431185383305!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00134872170705601!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00137313764726809!GO:0008168;methyltransferase activity;0.0014441907688736!GO:0043021;ribonucleoprotein binding;0.00144610618673335!GO:0016741;transferase activity, transferring one-carbon groups;0.00148987213654574!GO:0048518;positive regulation of biological process;0.00153252948566296!GO:0009055;electron carrier activity;0.00155811759600434!GO:0006414;translational elongation;0.0016022082593616!GO:0009109;coenzyme catabolic process;0.00162428459918197!GO:0016790;thiolester hydrolase activity;0.00163309938292994!GO:0051252;regulation of RNA metabolic process;0.0016551745903301!GO:0003899;DNA-directed RNA polymerase activity;0.00176497519465144!GO:0006383;transcription from RNA polymerase III promoter;0.00179068081018006!GO:0045941;positive regulation of transcription;0.00190228620749098!GO:0000139;Golgi membrane;0.00190345269990314!GO:0051251;positive regulation of lymphocyte activation;0.00196566009227193!GO:0005669;transcription factor TFIID complex;0.00198515357261212!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00206059394545796!GO:0046822;regulation of nucleocytoplasmic transport;0.00207737376203663!GO:0003678;DNA helicase activity;0.00207906376135116!GO:0004527;exonuclease activity;0.00215102749517553!GO:0006650;glycerophospholipid metabolic process;0.0021933596085735!GO:0005070;SH3/SH2 adaptor activity;0.00222196269265817!GO:0030518;steroid hormone receptor signaling pathway;0.00245157082016676!GO:0019843;rRNA binding;0.00249995124748987!GO:0016584;nucleosome positioning;0.00254132984211732!GO:0003684;damaged DNA binding;0.00258695876973906!GO:0000323;lytic vacuole;0.00262856643620448!GO:0005764;lysosome;0.00262856643620448!GO:0051223;regulation of protein transport;0.00263338582036146!GO:0006302;double-strand break repair;0.00266336238447486!GO:0022415;viral reproductive process;0.00266668318380997!GO:0045893;positive regulation of transcription, DNA-dependent;0.00272909045926483!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00284333220762764!GO:0046489;phosphoinositide biosynthetic process;0.0033187071820282!GO:0005637;nuclear inner membrane;0.00332232249042395!GO:0042802;identical protein binding;0.00335442097087987!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00336908224975475!GO:0051187;cofactor catabolic process;0.00342006857251889!GO:0042101;T cell receptor complex;0.00363150015477611!GO:0016585;chromatin remodeling complex;0.00370590037885121!GO:0032259;methylation;0.00370590037885121!GO:0000279;M phase;0.00372655978361523!GO:0051789;response to protein stimulus;0.00372655978361523!GO:0006986;response to unfolded protein;0.00372655978361523!GO:0008276;protein methyltransferase activity;0.00378682328431626!GO:0019867;outer membrane;0.00380075020941962!GO:0003711;transcription elongation regulator activity;0.00395325364286932!GO:0030258;lipid modification;0.00400403258851881!GO:0043414;biopolymer methylation;0.0040453333923383!GO:0005741;mitochondrial outer membrane;0.00404695554080937!GO:0005684;U2-dependent spliceosome;0.00407436395894373!GO:0008139;nuclear localization sequence binding;0.00410007566140134!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00416308914998525!GO:0005048;signal sequence binding;0.00433235000588533!GO:0032200;telomere organization and biogenesis;0.00438307048882225!GO:0000723;telomere maintenance;0.00438307048882225!GO:0043488;regulation of mRNA stability;0.0046184098836968!GO:0043487;regulation of RNA stability;0.0046184098836968!GO:0031968;organelle outer membrane;0.00465235630423624!GO:0005798;Golgi-associated vesicle;0.00484344763885366!GO:0006468;protein amino acid phosphorylation;0.00490320499292524!GO:0040029;regulation of gene expression, epigenetic;0.00500482283078914!GO:0019901;protein kinase binding;0.00500482283078914!GO:0030521;androgen receptor signaling pathway;0.00502339199644329!GO:0043087;regulation of GTPase activity;0.00509268828259078!GO:0031252;leading edge;0.00525899520232495!GO:0005096;GTPase activator activity;0.00528673371312715!GO:0051059;NF-kappaB binding;0.00531745556802488!GO:0004518;nuclease activity;0.00534611217777765!GO:0005774;vacuolar membrane;0.00536771582777735!GO:0008033;tRNA processing;0.00554465675533911!GO:0048500;signal recognition particle;0.00558036147740193!GO:0005819;spindle;0.00610583090319621!GO:0046649;lymphocyte activation;0.00613463443717465!GO:0051336;regulation of hydrolase activity;0.00628048806968333!GO:0051539;4 iron, 4 sulfur cluster binding;0.00635691490503856!GO:0003702;RNA polymerase II transcription factor activity;0.00646483380050134!GO:0000786;nucleosome;0.00649333064572491!GO:0051329;interphase of mitotic cell cycle;0.00649333064572491!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00671577256168732!GO:0006818;hydrogen transport;0.0068379702451199!GO:0048468;cell development;0.0069835899923044!GO:0017091;AU-rich element binding;0.0069835899923044!GO:0050779;RNA destabilization;0.0069835899923044!GO:0000289;poly(A) tail shortening;0.0069835899923044!GO:0051052;regulation of DNA metabolic process;0.00704796677954559!GO:0046474;glycerophospholipid biosynthetic process;0.00722112984402133!GO:0030658;transport vesicle membrane;0.00760478531024569!GO:0005657;replication fork;0.00774952947966317!GO:0030522;intracellular receptor-mediated signaling pathway;0.00775775260233215!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00775775260233215!GO:0015992;proton transport;0.00779684080861656!GO:0019904;protein domain specific binding;0.00784517460672026!GO:0007004;telomere maintenance via telomerase;0.00785127797649044!GO:0000049;tRNA binding;0.00815232571824015!GO:0045603;positive regulation of endothelial cell differentiation;0.00815232571824015!GO:0006376;mRNA splice site selection;0.00815232571824015!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00815232571824015!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00820632404622007!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00820632404622007!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00820632404622007!GO:0000209;protein polyubiquitination;0.00837529523526602!GO:0051092;activation of NF-kappaB transcription factor;0.00875853682518531!GO:0004722;protein serine/threonine phosphatase activity;0.00889052686529822!GO:0005765;lysosomal membrane;0.00905303667349507!GO:0008287;protein serine/threonine phosphatase complex;0.00907454739959426!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00921954956711326!GO:0043621;protein self-association;0.00922064151113612!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00969852232589846!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00971754696443783!GO:0016279;protein-lysine N-methyltransferase activity;0.00996108484489493!GO:0018024;histone-lysine N-methyltransferase activity;0.00996108484489493!GO:0016278;lysine N-methyltransferase activity;0.00996108484489493!GO:0019900;kinase binding;0.010356724103491!GO:0050852;T cell receptor signaling pathway;0.0107081233455186!GO:0051098;regulation of binding;0.0108418601422254!GO:0000119;mediator complex;0.0111903600036896!GO:0050870;positive regulation of T cell activation;0.0112198772243954!GO:0006289;nucleotide-excision repair;0.0112964531318367!GO:0051325;interphase;0.0113695384480514!GO:0019210;kinase inhibitor activity;0.0115132073798652!GO:0044437;vacuolar part;0.0116951141013071!GO:0046854;phosphoinositide phosphorylation;0.0117642062375721!GO:0043681;protein import into mitochondrion;0.0119591286024857!GO:0030118;clathrin coat;0.0120140064398081!GO:0016311;dephosphorylation;0.0122058443683481!GO:0008312;7S RNA binding;0.0122163186280105!GO:0048487;beta-tubulin binding;0.0122442106572696!GO:0032508;DNA duplex unwinding;0.0122601598878378!GO:0032392;DNA geometric change;0.0122601598878378!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0122601598878378!GO:0045047;protein targeting to ER;0.0122601598878378!GO:0000781;chromosome, telomeric region;0.0124118615502812!GO:0022406;membrane docking;0.012630127139377!GO:0048278;vesicle docking;0.012630127139377!GO:0016569;covalent chromatin modification;0.0128153788441704!GO:0051235;maintenance of localization;0.0129731622258906!GO:0005762;mitochondrial large ribosomal subunit;0.0129833520737888!GO:0000315;organellar large ribosomal subunit;0.0129833520737888!GO:0000314;organellar small ribosomal subunit;0.0134918176162076!GO:0005763;mitochondrial small ribosomal subunit;0.0134918176162076!GO:0009893;positive regulation of metabolic process;0.0137407293707886!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0141858302307918!GO:0000059;protein import into nucleus, docking;0.0141913446641955!GO:0047485;protein N-terminus binding;0.0143586696231268!GO:0006904;vesicle docking during exocytosis;0.0145653754617892!GO:0004402;histone acetyltransferase activity;0.0145822276845986!GO:0004468;lysine N-acetyltransferase activity;0.0145822276845986!GO:0033673;negative regulation of kinase activity;0.0145822276845986!GO:0006469;negative regulation of protein kinase activity;0.0145822276845986!GO:0015923;mannosidase activity;0.0146190777063935!GO:0031461;cullin-RING ubiquitin ligase complex;0.0146500973607502!GO:0031902;late endosome membrane;0.0148127222411724!GO:0043549;regulation of kinase activity;0.0148134565742139!GO:0004860;protein kinase inhibitor activity;0.0149995423204674!GO:0051338;regulation of transferase activity;0.015095593935978!GO:0008624;induction of apoptosis by extracellular signals;0.0152347958673838!GO:0030880;RNA polymerase complex;0.0153577433887445!GO:0008097;5S rRNA binding;0.015657799312146!GO:0051087;chaperone binding;0.0156675537019643!GO:0000287;magnesium ion binding;0.015756173752505!GO:0016788;hydrolase activity, acting on ester bonds;0.015756173752505!GO:0046834;lipid phosphorylation;0.0162914939453769!GO:0050811;GABA receptor binding;0.0166490127067236!GO:0030660;Golgi-associated vesicle membrane;0.0169694456698116!GO:0000118;histone deacetylase complex;0.0171030714777493!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0171141870988965!GO:0006406;mRNA export from nucleus;0.0176646988329096!GO:0030127;COPII vesicle coat;0.0176646988329096!GO:0012507;ER to Golgi transport vesicle membrane;0.0176646988329096!GO:0043433;negative regulation of transcription factor activity;0.018060635925149!GO:0016570;histone modification;0.0181062001809499!GO:0033549;MAP kinase phosphatase activity;0.0181860335969899!GO:0017017;MAP kinase tyrosine/serine/threonine phosphatase activity;0.0181860335969899!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0182586180325558!GO:0042054;histone methyltransferase activity;0.0188536859711581!GO:0000776;kinetochore;0.0188732880876455!GO:0001772;immunological synapse;0.0188732880876455!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0189261008287519!GO:0007034;vacuolar transport;0.0192920009277305!GO:0003950;NAD+ ADP-ribosyltransferase activity;0.0192920009277305!GO:0006354;RNA elongation;0.0196730304511982!GO:0016791;phosphoric monoester hydrolase activity;0.0197220802579!GO:0033116;ER-Golgi intermediate compartment membrane;0.0200507980959672!GO:0031098;stress-activated protein kinase signaling pathway;0.0205457910475066!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0206432427473019!GO:0000428;DNA-directed RNA polymerase complex;0.0206432427473019!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0206432427473019!GO:0032318;regulation of Ras GTPase activity;0.0213332099518277!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0214012877289876!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0214012877289876!GO:0005869;dynactin complex;0.0214521750000978!GO:0030134;ER to Golgi transport vesicle;0.0214521750000978!GO:0008094;DNA-dependent ATPase activity;0.0222691108819767!GO:0000082;G1/S transition of mitotic cell cycle;0.0224216712004808!GO:0033157;regulation of intracellular protein transport;0.0226555698718931!GO:0042306;regulation of protein import into nucleus;0.0226555698718931!GO:0006595;polyamine metabolic process;0.0235541373659037!GO:0007006;mitochondrial membrane organization and biogenesis;0.0238336469997828!GO:0005521;lamin binding;0.0243126691244497!GO:0016605;PML body;0.0248311167637808!GO:0046983;protein dimerization activity;0.025062155000116!GO:0015980;energy derivation by oxidation of organic compounds;0.0254506662992957!GO:0006497;protein amino acid lipidation;0.0255464468952656!GO:0016859;cis-trans isomerase activity;0.026676111712994!GO:0046578;regulation of Ras protein signal transduction;0.0267536172897594!GO:0043022;ribosome binding;0.0276781057389574!GO:0022890;inorganic cation transmembrane transporter activity;0.0278553568810101!GO:0006984;ER-nuclear signaling pathway;0.0279222276992654!GO:0046467;membrane lipid biosynthetic process;0.0280818977582024!GO:0045859;regulation of protein kinase activity;0.0281732399223531!GO:0045815;positive regulation of gene expression, epigenetic;0.0283907574227685!GO:0051540;metal cluster binding;0.028769415539974!GO:0051536;iron-sulfur cluster binding;0.028769415539974!GO:0045321;leukocyte activation;0.0293641348979662!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0293641348979662!GO:0006839;mitochondrial transport;0.0298789035325418!GO:0051348;negative regulation of transferase activity;0.0300551494850714!GO:0016272;prefoldin complex;0.0304752948681986!GO:0004672;protein kinase activity;0.0304841185405208!GO:0001667;ameboidal cell migration;0.0310785029351317!GO:0032027;myosin light chain binding;0.0310785029351317!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0315683741407233!GO:0031647;regulation of protein stability;0.0316122955647677!GO:0042608;T cell receptor binding;0.0316793103007178!GO:0006626;protein targeting to mitochondrion;0.0318153411524976!GO:0004532;exoribonuclease activity;0.0319855791349009!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0319855791349009!GO:0009117;nucleotide metabolic process;0.0322711034310709!GO:0031325;positive regulation of cellular metabolic process;0.0323123809899758!GO:0042393;histone binding;0.0335670752192241!GO:0045185;maintenance of protein localization;0.0335949638693987!GO:0051249;regulation of lymphocyte activation;0.0336123554077714!GO:0005099;Ras GTPase activator activity;0.0336329786675962!GO:0006919;caspase activation;0.0337740883543127!GO:0051091;positive regulation of transcription factor activity;0.0342743396132007!GO:0008536;Ran GTPase binding;0.0342771031006599!GO:0050865;regulation of cell activation;0.034613354294229!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0349809418383292!GO:0032940;secretion by cell;0.0352321744497091!GO:0050863;regulation of T cell activation;0.0353878305825147!GO:0046426;negative regulation of JAK-STAT cascade;0.0365167953708021!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0367177807167609!GO:0030968;unfolded protein response;0.0368433357408141!GO:0007254;JNK cascade;0.0375616901375587!GO:0031901;early endosome membrane;0.0375649444952577!GO:0006661;phosphatidylinositol biosynthetic process;0.037602036855529!GO:0031124;mRNA 3'-end processing;0.0376752057959812!GO:0006268;DNA unwinding during replication;0.038774513106474!GO:0000303;response to superoxide;0.040219656605609!GO:0030867;rough endoplasmic reticulum membrane;0.0405174049514474!GO:0045045;secretory pathway;0.0405174049514474!GO:0008637;apoptotic mitochondrial changes;0.0406452789855809!GO:0006278;RNA-dependent DNA replication;0.0406452789855809!GO:0051457;maintenance of protein localization in nucleus;0.041322783083653!GO:0005874;microtubule;0.0422965428328375!GO:0016455;RNA polymerase II transcription mediator activity;0.0422965428328375!GO:0000738;DNA catabolic process, exonucleolytic;0.0426971616628219!GO:0008408;3'-5' exonuclease activity;0.0427012597253736!GO:0006470;protein amino acid dephosphorylation;0.0427548534320007!GO:0019058;viral infectious cycle;0.0428171743715054!GO:0035258;steroid hormone receptor binding;0.0431712361869453!GO:0051056;regulation of small GTPase mediated signal transduction;0.0431712361869453!GO:0035026;leading edge cell differentiation;0.043315487203913!GO:0006301;postreplication repair;0.0438902450936925!GO:0030217;T cell differentiation;0.0453326411924434!GO:0008180;signalosome;0.0453851868318719!GO:0042147;retrograde transport, endosome to Golgi;0.0453851868318719!GO:0032507;maintenance of cellular protein localization;0.0453851868318719!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0459595411858962!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0459595411858962!GO:0046979;TAP2 binding;0.046476091398774!GO:0046977;TAP binding;0.046476091398774!GO:0046978;TAP1 binding;0.046476091398774!GO:0016407;acetyltransferase activity;0.0466246459896542!GO:0043281;regulation of caspase activity;0.046760098692699!GO:0016763;transferase activity, transferring pentosyl groups;0.0470275561477631!GO:0030041;actin filament polymerization;0.0470275561477631!GO:0030145;manganese ion binding;0.0483503893059245!GO:0000339;RNA cap binding;0.0488936693410565!GO:0004003;ATP-dependent DNA helicase activity;0.0496413614446246!GO:0030119;AP-type membrane coat adaptor complex;0.0498838505677954 | |||
|sample_id=11225 | |sample_id=11225 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=PAX3,7:4.27376749486;FOXO1,3,4:3.57329905055;CREB1:3.40375886779;FOX{D1,D2}:3.33936645163;ATF4:3.17249672585;BPTF:3.06973216962;ATF5_CREB3:2.89674226251;RUNX1..3:2.79423052859;PITX1..3:2.70129129203;RFX2..5_RFXANK_RFXAP:2.52246214858;FOX{F1,F2,J1}:2.51981393367;FOXN1:2.49834628194;FOXP1:2.33318387029;CDX1,2,4:2.21803554574;ELF1,2,4:2.21118657184;DMAP1_NCOR{1,2}_SMARC:2.21103656783;ZBTB16:2.18096259982;RORA:2.13761589202;RFX1:1.89821617299;NKX6-1,2:1.83756541056;PAX4:1.81704307041;HMX1:1.81249355495;PAX2:1.8036186981;NFKB1_REL_RELA:1.74202420173;BREu{core}:1.71253729211;ETS1,2:1.70975291758;LEF1_TCF7_TCF7L1,2:1.62121780324;JUN:1.60122427962;IKZF2:1.57234728363;TGIF1:1.57060910515;FOX{I1,J2}:1.55383810968;ATF2:1.52191070654;PDX1:1.519047198;SPI1:1.35560781192;TOPORS:1.3218557876;NKX2-1,4:1.31135699926;IRF1,2:1.18037760723;SPIB:1.07680075537;GATA6:1.02258659165;HBP1_HMGB_SSRP1_UBTF:0.958505614433;AHR_ARNT_ARNT2:0.936332749297;T:0.907850754093;HIF1A:0.887015682263;PAX6:0.872064117079;TLX2:0.808026846304;CUX2:0.769109521166;NFATC1..3:0.747721657723;NFIL3:0.690381029629;HOX{A6,A7,B6,B7}:0.654558152095;SOX2:0.634529932148;ATF6:0.570974829933;ELK1,4_GABP{A,B1}:0.553786659092;EGR1..3:0.538789026004;ZEB1:0.527642491614;FOXA2:0.475141529606;AIRE:0.472658163154;MAFB:0.443954317671;PBX1:0.427985558147;SREBF1,2:0.425266348906;IRF7:0.41475810897;CRX:0.381735005222;HMGA1,2:0.375985762275;NKX3-1:0.357336954051;MYB:0.33790838644;SOX5:0.318644642577;TBX4,5:0.314823953866;SNAI1..3:0.311928825542;NFIX:0.294558079911;RREB1:0.265564258909;NANOG{mouse}:0.20218222661;STAT5{A,B}:0.148276335767;NKX2-2,8:0.139805844318;ZNF384:0.121591473764;NRF1:0.0990339668894;FOS_FOS{B,L1}_JUN{B,D}:0.0535433329556;YY1:0.0520267414185;FOSL2:0.0113069470236;EVI1:-0.0342040803268;EP300:-0.04478169847;E2F1..5:-0.0599242219436;STAT2,4,6:-0.0605628396852;NFY{A,B,C}:-0.105434164568;OCT4_SOX2{dimer}:-0.132992686394;DBP:-0.14393599208;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.156801947659;FOXP3:-0.156814606448;POU2F1..3:-0.191549477879;MYOD1:-0.216951033352;HOXA9_MEIS1:-0.228547140192;NR5A1,2:-0.240396459132;BACH2:-0.249941431006;NFE2L1:-0.259899031288;SMAD1..7,9:-0.274270416791;MYFfamily:-0.282251382418;HES1:-0.296744743936;ZFP161:-0.297133665996;VSX1,2:-0.302524854235;POU1F1:-0.324041000952;NFE2:-0.334227046364;MED-1{core}:-0.33684265638;STAT1,3:-0.343355823442;MZF1:-0.360200093853;LMO2:-0.36217854029;PRRX1,2:-0.371414057698;MTE{core}:-0.420429556588;FOXQ1:-0.425892991008;SRF:-0.433161368813;HLF:-0.442824436196;CEBPA,B_DDIT3:-0.444494671289;POU3F1..4:-0.445222572431;SPZ1:-0.450160791383;HNF4A_NR2F1,2:-0.478272946678;AR:-0.479388128286;NANOG:-0.505686947514;HNF1A:-0.507434918993;PPARG:-0.524489188211;GCM1,2:-0.564902359013;PATZ1:-0.575086661928;TFDP1:-0.605744707048;FOXM1:-0.613649619919;SOX17:-0.622018946582;ZNF143:-0.631662669645;NHLH1,2:-0.632037118597;PAX5:-0.649172544276;ALX4:-0.6723237626;SOX{8,9,10}:-0.704441747685;bHLH_family:-0.708152804916;TAL1_TCF{3,4,12}:-0.742366471593;GLI1..3:-0.748530073319;ALX1:-0.788408071208;FOXD3:-0.820462046768;GATA4:-0.830613070802;MEF2{A,B,C,D}:-0.847599791669;HOX{A5,B5}:-0.863690755514;MTF1:-0.871986481831;LHX3,4:-0.873016600889;RBPJ:-0.87700144953;NFE2L2:-0.899053492713;MAZ:-0.900603022547;FOXL1:-0.924233214022;RXRA_VDR{dimer}:-0.952215812222;MYBL2:-0.958894577516;ADNP_IRX_SIX_ZHX:-0.976953861888;ZBTB6:-0.984066060096;PAX8:-1.01214073724;TEF:-1.0170106973;GFI1:-1.04441546258;REST:-1.04825544233;SP1:-1.12785327255;HAND1,2:-1.15974374257;PRDM1:-1.16488079467;TFAP2B:-1.20537566273;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.25254132953;ZNF148:-1.26627156971;POU6F1:-1.30766403317;ZNF238:-1.3226407128;CDC5L:-1.32762815054;GFI1B:-1.35732748682;TP53:-1.3603918792;NR1H4:-1.39911058634;TBP:-1.41020958791;HIC1:-1.42837168547;GTF2A1,2:-1.47560003059;TFCP2:-1.48290080351;XCPE1{core}:-1.48508899271;ZIC1..3:-1.48560146306;UFEwm:-1.48975691924;POU5F1:-1.4930831633;ARID5B:-1.49458626892;ONECUT1,2:-1.51412779532;ZNF423:-1.5369242083;NKX2-3_NKX2-5:-1.55106337799;HSF1,2:-1.58778567201;TFAP4:-1.59850948855;GTF2I:-1.60144597391;TFAP2{A,C}:-1.61972855417;XBP1:-1.63441206139;NR6A1:-1.65324104167;EN1,2:-1.65928996628;TEAD1:-1.66905331135;TLX1..3_NFIC{dimer}:-1.67686538662;HOX{A4,D4}:-1.7554840268;KLF4:-1.81509263935;ESRRA:-1.83643036443;NR3C1:-2.06163015537;EBF1:-2.24441034995;GZF1:-2.28279954999;RXR{A,B,G}:-2.28849676601;NKX3-2:-2.34527933139;ESR1:-2.59610362318;IKZF1:-2.69673432008;PAX1,9:-2.79270781061 | |top_motifs=PAX3,7:4.27376749486;FOXO1,3,4:3.57329905055;CREB1:3.40375886779;FOX{D1,D2}:3.33936645163;ATF4:3.17249672585;BPTF:3.06973216962;ATF5_CREB3:2.89674226251;RUNX1..3:2.79423052859;PITX1..3:2.70129129203;RFX2..5_RFXANK_RFXAP:2.52246214858;FOX{F1,F2,J1}:2.51981393367;FOXN1:2.49834628194;FOXP1:2.33318387029;CDX1,2,4:2.21803554574;ELF1,2,4:2.21118657184;DMAP1_NCOR{1,2}_SMARC:2.21103656783;ZBTB16:2.18096259982;RORA:2.13761589202;RFX1:1.89821617299;NKX6-1,2:1.83756541056;PAX4:1.81704307041;HMX1:1.81249355495;PAX2:1.8036186981;NFKB1_REL_RELA:1.74202420173;BREu{core}:1.71253729211;ETS1,2:1.70975291758;LEF1_TCF7_TCF7L1,2:1.62121780324;JUN:1.60122427962;IKZF2:1.57234728363;TGIF1:1.57060910515;FOX{I1,J2}:1.55383810968;ATF2:1.52191070654;PDX1:1.519047198;SPI1:1.35560781192;TOPORS:1.3218557876;NKX2-1,4:1.31135699926;IRF1,2:1.18037760723;SPIB:1.07680075537;GATA6:1.02258659165;HBP1_HMGB_SSRP1_UBTF:0.958505614433;AHR_ARNT_ARNT2:0.936332749297;T:0.907850754093;HIF1A:0.887015682263;PAX6:0.872064117079;TLX2:0.808026846304;CUX2:0.769109521166;NFATC1..3:0.747721657723;NFIL3:0.690381029629;HOX{A6,A7,B6,B7}:0.654558152095;SOX2:0.634529932148;ATF6:0.570974829933;ELK1,4_GABP{A,B1}:0.553786659092;EGR1..3:0.538789026004;ZEB1:0.527642491614;FOXA2:0.475141529606;AIRE:0.472658163154;MAFB:0.443954317671;PBX1:0.427985558147;SREBF1,2:0.425266348906;IRF7:0.41475810897;CRX:0.381735005222;HMGA1,2:0.375985762275;NKX3-1:0.357336954051;MYB:0.33790838644;SOX5:0.318644642577;TBX4,5:0.314823953866;SNAI1..3:0.311928825542;NFIX:0.294558079911;RREB1:0.265564258909;NANOG{mouse}:0.20218222661;STAT5{A,B}:0.148276335767;NKX2-2,8:0.139805844318;ZNF384:0.121591473764;NRF1:0.0990339668894;FOS_FOS{B,L1}_JUN{B,D}:0.0535433329556;YY1:0.0520267414185;FOSL2:0.0113069470236;EVI1:-0.0342040803268;EP300:-0.04478169847;E2F1..5:-0.0599242219436;STAT2,4,6:-0.0605628396852;NFY{A,B,C}:-0.105434164568;OCT4_SOX2{dimer}:-0.132992686394;DBP:-0.14393599208;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.156801947659;FOXP3:-0.156814606448;POU2F1..3:-0.191549477879;MYOD1:-0.216951033352;HOXA9_MEIS1:-0.228547140192;NR5A1,2:-0.240396459132;BACH2:-0.249941431006;NFE2L1:-0.259899031288;SMAD1..7,9:-0.274270416791;MYFfamily:-0.282251382418;HES1:-0.296744743936;ZFP161:-0.297133665996;VSX1,2:-0.302524854235;POU1F1:-0.324041000952;NFE2:-0.334227046364;MED-1{core}:-0.33684265638;STAT1,3:-0.343355823442;MZF1:-0.360200093853;LMO2:-0.36217854029;PRRX1,2:-0.371414057698;MTE{core}:-0.420429556588;FOXQ1:-0.425892991008;SRF:-0.433161368813;HLF:-0.442824436196;CEBPA,B_DDIT3:-0.444494671289;POU3F1..4:-0.445222572431;SPZ1:-0.450160791383;HNF4A_NR2F1,2:-0.478272946678;AR:-0.479388128286;NANOG:-0.505686947514;HNF1A:-0.507434918993;PPARG:-0.524489188211;GCM1,2:-0.564902359013;PATZ1:-0.575086661928;TFDP1:-0.605744707048;FOXM1:-0.613649619919;SOX17:-0.622018946582;ZNF143:-0.631662669645;NHLH1,2:-0.632037118597;PAX5:-0.649172544276;ALX4:-0.6723237626;SOX{8,9,10}:-0.704441747685;bHLH_family:-0.708152804916;TAL1_TCF{3,4,12}:-0.742366471593;GLI1..3:-0.748530073319;ALX1:-0.788408071208;FOXD3:-0.820462046768;GATA4:-0.830613070802;MEF2{A,B,C,D}:-0.847599791669;HOX{A5,B5}:-0.863690755514;MTF1:-0.871986481831;LHX3,4:-0.873016600889;RBPJ:-0.87700144953;NFE2L2:-0.899053492713;MAZ:-0.900603022547;FOXL1:-0.924233214022;RXRA_VDR{dimer}:-0.952215812222;MYBL2:-0.958894577516;ADNP_IRX_SIX_ZHX:-0.976953861888;ZBTB6:-0.984066060096;PAX8:-1.01214073724;TEF:-1.0170106973;GFI1:-1.04441546258;REST:-1.04825544233;SP1:-1.12785327255;HAND1,2:-1.15974374257;PRDM1:-1.16488079467;TFAP2B:-1.20537566273;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.25254132953;ZNF148:-1.26627156971;POU6F1:-1.30766403317;ZNF238:-1.3226407128;CDC5L:-1.32762815054;GFI1B:-1.35732748682;TP53:-1.3603918792;NR1H4:-1.39911058634;TBP:-1.41020958791;HIC1:-1.42837168547;GTF2A1,2:-1.47560003059;TFCP2:-1.48290080351;XCPE1{core}:-1.48508899271;ZIC1..3:-1.48560146306;UFEwm:-1.48975691924;POU5F1:-1.4930831633;ARID5B:-1.49458626892;ONECUT1,2:-1.51412779532;ZNF423:-1.5369242083;NKX2-3_NKX2-5:-1.55106337799;HSF1,2:-1.58778567201;TFAP4:-1.59850948855;GTF2I:-1.60144597391;TFAP2{A,C}:-1.61972855417;XBP1:-1.63441206139;NR6A1:-1.65324104167;EN1,2:-1.65928996628;TEAD1:-1.66905331135;TLX1..3_NFIC{dimer}:-1.67686538662;HOX{A4,D4}:-1.7554840268;KLF4:-1.81509263935;ESRRA:-1.83643036443;NR3C1:-2.06163015537;EBF1:-2.24441034995;GZF1:-2.28279954999;RXR{A,B,G}:-2.28849676601;NKX3-2:-2.34527933139;ESR1:-2.59610362318;IKZF1:-2.69673432008;PAX1,9:-2.79270781061 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11225-116C1;search_select_hide=table117:FF:11225-116C1 | |||
}} | }} | ||
Latest revision as of 16:25, 3 June 2020
| Name: | CD4+ T Cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10853 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10853
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10853
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.847 |
| 10 | 10 | 0.0173 |
| 100 | 100 | 0.857 |
| 101 | 101 | 0.148 |
| 102 | 102 | 0.874 |
| 103 | 103 | 0.459 |
| 104 | 104 | 0.956 |
| 105 | 105 | 0.532 |
| 106 | 106 | 0.718 |
| 107 | 107 | 0.00919 |
| 108 | 108 | 0.458 |
| 109 | 109 | 0.929 |
| 11 | 11 | 0.699 |
| 110 | 110 | 0.429 |
| 111 | 111 | 0.754 |
| 112 | 112 | 0.708 |
| 113 | 113 | 0.282 |
| 114 | 114 | 0.963 |
| 115 | 115 | 0.227 |
| 116 | 116 | 0.154 |
| 117 | 117 | 0.00911 |
| 118 | 118 | 0.616 |
| 119 | 119 | 0.181 |
| 12 | 12 | 0.715 |
| 120 | 120 | 0.359 |
| 121 | 121 | 0.485 |
| 122 | 122 | 0.946 |
| 123 | 123 | 1.38178e-5 |
| 124 | 124 | 0.818 |
| 125 | 125 | 0.501 |
| 126 | 126 | 0.862 |
| 127 | 127 | 0.415 |
| 128 | 128 | 0.536 |
| 129 | 129 | 0.416 |
| 13 | 13 | 0.723 |
| 130 | 130 | 0.292 |
| 131 | 131 | 0.567 |
| 132 | 132 | 0.281 |
| 133 | 133 | 0.712 |
| 134 | 134 | 0.946 |
| 135 | 135 | 0.245 |
| 136 | 136 | 0.925 |
| 137 | 137 | 0.0264 |
| 138 | 138 | 0.658 |
| 139 | 139 | 0.168 |
| 14 | 14 | 0.674 |
| 140 | 140 | 0.386 |
| 141 | 141 | 0.727 |
| 142 | 142 | 0.321 |
| 143 | 143 | 0.0874 |
| 144 | 144 | 0.815 |
| 145 | 145 | 0.729 |
| 146 | 146 | 0.537 |
| 147 | 147 | 0.0193 |
| 148 | 148 | 0.455 |
| 149 | 149 | 0.194 |
| 15 | 15 | 0.456 |
| 150 | 150 | 0.715 |
| 151 | 151 | 0.641 |
| 152 | 152 | 0.229 |
| 153 | 153 | 0.444 |
| 154 | 154 | 0.127 |
| 155 | 155 | 0.0544 |
| 156 | 156 | 0.904 |
| 157 | 157 | 0.588 |
| 158 | 158 | 0.00457 |
| 159 | 159 | 0.96 |
| 16 | 16 | 0.219 |
| 160 | 160 | 0.0936 |
| 161 | 161 | 0.652 |
| 162 | 162 | 0.0226 |
| 163 | 163 | 0.794 |
| 164 | 164 | 0.171 |
| 165 | 165 | 0.965 |
| 166 | 166 | 0.293 |
| 167 | 167 | 0.136 |
| 168 | 168 | 0.562 |
| 169 | 169 | 0.1 |
| 17 | 17 | 0.582 |
| 18 | 18 | 0.494 |
| 19 | 19 | 0.0235 |
| 2 | 2 | 0.129 |
| 20 | 20 | 0.178 |
| 21 | 21 | 0.723 |
| 22 | 22 | 0.188 |
| 23 | 23 | 0.43 |
| 24 | 24 | 0.55 |
| 25 | 25 | 0.218 |
| 26 | 26 | 0.848 |
| 27 | 27 | 0.654 |
| 28 | 28 | 0.401 |
| 29 | 29 | 0.161 |
| 3 | 3 | 0.445 |
| 30 | 30 | 0.039 |
| 31 | 31 | 0.462 |
| 32 | 32 | 0.00196 |
| 33 | 33 | 0.555 |
| 34 | 34 | 0.24 |
| 35 | 35 | 0.242 |
| 36 | 36 | 0.119 |
| 37 | 37 | 0.789 |
| 38 | 38 | 0.652 |
| 39 | 39 | 0.27 |
| 4 | 4 | 0.933 |
| 40 | 40 | 0.417 |
| 41 | 41 | 0.201 |
| 42 | 42 | 0.184 |
| 43 | 43 | 0.813 |
| 44 | 44 | 0.548 |
| 45 | 45 | 0.136 |
| 46 | 46 | 0.918 |
| 47 | 47 | 0.538 |
| 48 | 48 | 0.938 |
| 49 | 49 | 0.176 |
| 5 | 5 | 0.715 |
| 50 | 50 | 0.483 |
| 51 | 51 | 0.827 |
| 52 | 52 | 0.586 |
| 53 | 53 | 0.234 |
| 54 | 54 | 0.833 |
| 55 | 55 | 0.909 |
| 56 | 56 | 0.761 |
| 57 | 57 | 0.785 |
| 58 | 58 | 0.248 |
| 59 | 59 | 0.153 |
| 6 | 6 | 0.973 |
| 60 | 60 | 0.814 |
| 61 | 61 | 0.218 |
| 62 | 62 | 0.379 |
| 63 | 63 | 0.802 |
| 64 | 64 | 0.993 |
| 65 | 65 | 0.396 |
| 66 | 66 | 0.782 |
| 67 | 67 | 0.47 |
| 68 | 68 | 0.574 |
| 69 | 69 | 0.496 |
| 7 | 7 | 0.721 |
| 70 | 70 | 0.169 |
| 71 | 71 | 0.356 |
| 72 | 72 | 0.586 |
| 73 | 73 | 0.452 |
| 74 | 74 | 0.969 |
| 75 | 75 | 0.0929 |
| 76 | 76 | 0.073 |
| 77 | 77 | 0.00437 |
| 78 | 78 | 0.765 |
| 79 | 79 | 0.959 |
| 8 | 8 | 0.311 |
| 80 | 80 | 0.0727 |
| 81 | 81 | 0.979 |
| 82 | 82 | 0.604 |
| 83 | 83 | 0.771 |
| 84 | 84 | 0.19 |
| 85 | 85 | 0.539 |
| 86 | 86 | 0.208 |
| 87 | 87 | 0.291 |
| 88 | 88 | 0.964 |
| 89 | 89 | 0.00312 |
| 9 | 9 | 0.564 |
| 90 | 90 | 0.121 |
| 91 | 91 | 0.785 |
| 92 | 92 | 0.996 |
| 93 | 93 | 0.871 |
| 94 | 94 | 0.466 |
| 95 | 95 | 0.629 |
| 96 | 96 | 0.884 |
| 97 | 97 | 0.348 |
| 98 | 98 | 0.471 |
| 99 | 99 | 2.77473e-5 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10853
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000031 CD4-positive T cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000624 (CD4-positive, alpha-beta T cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000031 (CD4-positive T cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)
