FF:11210-116A4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005794 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005794 | ||
|HumanCAGEScanFiles=NCig10018;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.NCig10018.11210-116A4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.NCig10018.11210-116A4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.NCig10018.11210-116A4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.NCig10018.11210-116A4.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008467;DRR009339;DRZ000764;DRZ002149;DRZ012114;DRZ013499 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037141;DRR041507;DRZ007149 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000168 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.97!92.71!SOX17;;chr6:134210243..134210257,+!p1@TCF21!1.65!43.22!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!1.49!36.94!FOXF1;;chr11:46299199..46299233,+!p1@CREB3L1!1.39!119.19!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.39!32.06!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!1.38!23.00!HAND2;;chr11:65686802..65686818,+!p6@DRAP1!1.37!38.34!DRAP1;;chr2:239756671..239756732,+!p1@TWIST2!1.30!59.25!TWIST2;;chr20:6748325..6748352,+!p1@BMP2!1.30!27.18!BMP2;;chr11:46299539..46299620,+!p2@CREB3L1!1.28!29.97!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!1.28!20.21!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.27!514.41!HMGA1;;chr9:132427972..132428056,+!p1@PRRX2!1.22!20.21!PRRX2;;chr1:170633262..170633285,+!p3@PRRX1!1.21!17.43!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!1.21!15.33!HAND2;;chr11:65687362..65687436,+!p3@DRAP1!1.17!62.73!DRAP1;;chr11:65686732..65686756,+!p2@DRAP1!1.17!58.55!DRAP1;;chr10:94449703..94449718,+!p1@HHEX!1.17!52.97!HHEX;;chr9:132427883..132427951,+!p2@PRRX2!1.17!13.94!PRRX2;;chr5:72744594..72744609,-!p1@FOXD1!1.16!61.34!FOXD1;;chr11:34642612..34642646,+!p1@EHF!1.15!13.24!EHF;;chr11:65667884..65667895,-!p2@FOSL1!1.14!49.49!FOSL1;;chrY:2803415..2803468,+!p1@ZFY!1.13!12.55!ZFY;;chr5:72744445..72744466,-!p2@FOXD1!1.12!20.21!FOXD1;;chr2:102091566..102091581,-!p1@RFX8!1.11!11.85!RFX8;;chr11:65667846..65667868,-!p1@FOSL1!1.07!287.18!FOSL1;;chr18:53068911..53068935,-!p4@TCF4!1.06!11.85!TCF4;;chr2:239756739..239756755,+!p2@TWIST2!1.03!16.73!TWIST2;;chr16:86600426..86600441,+!p1@FOXC2!1.02!23.70!FOXC2;;chr1:170633058..170633084,+!p5@PRRX1!1.00!9.06!PRRX1;;chr15:67418119..67418162,+!p5@SMAD3!0.99!9.76!SMAD3;;chr12:66218836..66218888,+!p1@HMGA2!0.98!81.55!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!0.96!23.00!OSR1;;chr15:57511609..57511651,+!p2@TCF12!0.96!13.94!TCF12;;chr15:83953397..83953425,-!p1@BNC1!0.95!9.06!BNC1;;chr12:124873852..124873881,-!p3@NCOR2!0.94!48.10!NCOR2;;chr2:121493425..121493474,+!p1@GLI2!0.94!17.43!GLI2;;chrY:21906594..21906622,-!p1@KDM5D!0.94!7.67!KDM5D;;chr7:35293685..35293718,-!p1@TBX20!0.94!7.67!TBX20;;chr11:65687158..65687216,+!p4@DRAP1!0.93!44.61!DRAP1;;chr9:35732647..35732678,+!p2@CREB3!0.92!41.82!CREB3;;chr19:13134772..13134822,+!p2@NFIX!0.90!10.46!NFIX;;chr17:46671108..46671147,-!p1@HOXB5!0.90!6.97!HOXB5;;chr1:170632477..170632506,+!p6@PRRX1!0.90!6.97!PRRX1;;chr15:96869114..96869160,+!p11@NR2F2!0.88!9.06!NR2F2;;chr11:65687222..65687240,+!p7@DRAP1!0.87!8.36!DRAP1;;chr11:120107344..120107351,+!p1@POU2F3!0.86!7.67!POU2F3;;chr12:66218923..66218934,+!p14@HMGA2!0.86!6.27!HMGA2;;chr2:102091478..102091490,-!p3@RFX8!0.86!6.27!RFX8;;chr12:124873357..124873401,-!p1@NCOR2!0.85!75.98!NCOR2;;chr17:59477233..59477263,+!p1@TBX2!0.84!19.52!TBX2;;chr17:46622070..46622109,-!p1@HOXB2!0.84!13.94!HOXB2;;chr17:46622114..46622138,-!p4@HOXB2!0.83!9.06!HOXB2;;chr12:66218255..66218304,+!p3@HMGA2!0.82!16.03!HMGA2;;chr19:31840130..31840160,-!p2@TSHZ3!0.82!9.06!TSHZ3;;chr18:19749386..19749404,+!p2@GATA6!0.82!8.36!GATA6;;chr1:170632115..170632136,+!p9@PRRX1!0.82!5.58!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.82!5.58!PRRX1;;chr7:27153454..27153469,-!p2@HOXA3!0.82!5.58!HOXA3;;chr6:34204672..34204692,+!p1@HMGA1!0.81!665.67!HMGA1;;chr7:137686763..137686784,-!p5@CREB3L2!0.81!9.76!CREB3L2;;chr12:115121962..115121987,-!p1@TBX3!0.80!48.10!TBX3;;chr2:121493492..121493537,+!p2@GLI2!0.80!9.06!GLI2;;chr12:27485762..27485776,+!p3@ARNTL2!0.79!14.64!ARNTL2;;chr17:1959369..1959388,+!p2@HIC1!0.79!14.64!HIC1;;chr8:145159846..145159889,+!p6@MAF1!0.79!7.67!MAF1;;chr19:13136130..13136165,+!p6@NFIX!0.79!6.97!NFIX;;chr17:46621937..46621966,-!p2@HOXB2!0.78!14.64!HOXB2;;chr9:35732592..35732640,+!p1@CREB3!0.77!71.79!CREB3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.77!66.92!ZC3H12A;;chr12:53614115..53614154,-!p1@RARG!0.77!28.58!RARG;;chr12:66218598..66218645,+!p2@HMGA2!0.77!24.40!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!0.77!16.73!GATA6;;chr4:26322267..26322334,+!p3@RBPJ!0.77!12.55!RBPJ;;chr5:72744562..72744573,-!p3@FOXD1!0.77!6.27!FOXD1;;chr2:102091144..102091183,-!p2@RFX8!0.77!4.88!RFX8;;chr18:3448455..3448480,+!p5@TGIF1!0.75!9.06!TGIF1;;chr12:66218212..66218244,+!p5@HMGA2!0.75!6.97!HMGA2;;chr14:62162285..62162296,+!p3@HIF1A!0.74!25.79!HIF1A;;chr11:65687243..65687276,+!p8@DRAP1!0.74!6.27!DRAP1;;chr15:67418047..67418093,+!p4@SMAD3!0.72!5.58!SMAD3;;chr6:34204973..34204990,+!p4@HMGA1!0.71!62.73!HMGA1;;chr3:5021268..5021282,+!p4@BHLHE40!0.71!9.06!BHLHE40;;chr3:141087562..141087594,+!p12@ZBTB38!0.71!4.18!ZBTB38;;chr3:25470156..25470227,+!p2@RARB!0.71!4.18!RARB;;chr5:72744336..72744359,-!p5@FOXD1!0.71!4.18!FOXD1;;chr8:25902876..25902936,-!p1@EBF2!0.71!4.18!EBF2;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.18!CREB3L1;;chr12:115122318..115122331,-!p2@TBX3!0.71!4.18!TBX3;;chr12:66218904..66218913,+!p11@HMGA2!0.71!4.18!HMGA2;;chr5:72743793..72743855,-!p4@FOXD1!0.70!4.88!FOXD1;;chr14:62162258..62162269,+!p2@HIF1A!0.69!43.22!HIF1A;;chr3:141087393..141087426,+!p3@ZBTB38!0.69!17.43!ZBTB38;;chr22:38598086..38598105,+!p1@MAFF!0.68!46.00!MAFF;;chr1:170632959..170632987,+!p4@PRRX1!0.68!4.18!PRRX1;;chr11:65686952..65686975,+!p5@DRAP1!0.67!23.00!DRAP1;;chr5:321810..321877,+!p1@AHRR!0.67!13.24!AHRR;;chr21:36260343..36260402,-!p6@RUNX1!0.67!6.27!RUNX1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.66!295.54!TAX1BP3;;chr15:42749722..42749739,-!p2@ZFP106!0.66!6.97!ZFP106;;chr2:200322654..200322707,-!p2@SATB2!0.66!5.58!SATB2;;chr10:94449675..94449694,+!p2@HHEX!0.65!10.46!HHEX;;chr14:61191018..61191048,-!p1@SIX4!0.65!8.36!SIX4;;chr17:41622765..41622821,-!p2@ETV4!0.65!5.58!ETV4;;chr17:59477275..59477286,+!p3@TBX2!0.65!4.88!TBX2;;chr15:67458491..67458505,+!p18@SMAD3!0.65!3.49!SMAD3;;chr15:96869165..96869183,+!p20@NR2F2!0.65!3.49!NR2F2;;chr16:86600458..86600461,+!p3@FOXC2!0.65!3.49!FOXC2;;chr19:13135582..13135600,+!p3@NFIX!0.65!3.49!NFIX;;chr12:54447637..54447659,+!p4@HOXC4!0.65!3.49!HOXC4;;chr7:1577899..1577943,+!p3@MAFK!0.65!3.49!MAFK;;chr7:27153590..27153608,-!p7@HOXA3!0.65!3.49!HOXA3;;chr19:47523058..47523114,+!p1@NPAS1!0.65!3.49!NPAS1;;chr1:170632762..170632786,+!p13@PRRX1!0.65!3.49!PRRX1;;chr12:66218378..66218401,+!p6@HMGA2!0.64!5.58!HMGA2;;chr8:106330656..106330684,+!p1@ZFPM2!0.63!9.76!ZFPM2;;chr2:185463247..185463263,+!p1@ZNF804A!0.63!6.27!ZNF804A;;chr12:26277929..26277955,-!p3@BHLHE41!0.63!4.88!BHLHE41;;chr7:44143925..44143970,+!p1@AEBP1!0.62!85.04!AEBP1;;chr1:151032860..151032918,+!p1@MLLT11!0.62!44.61!MLLT11;;chr14:24837368..24837401,+!p1@NFATC4!0.62!8.36!NFATC4;;chr21:36260295..36260310,-!p3@RUNX1!0.62!5.58!RUNX1;;chr15:96869292..96869320,+!p15@NR2F2!0.62!4.88!NR2F2;;chr20:30193083..30193098,+!p1@ID1!0.61!304.61!ID1;;chr19:31840313..31840380,-!p1@TSHZ3!0.61!9.06!TSHZ3;;chr3:141121847..141121868,+!p5@ZBTB38!0.60!4.88!ZBTB38;;chr10:77161533..77161546,-!p2@ZNF503!0.58!13.24!ZNF503;;chr12:8185346..8185360,+!p2@FOXJ2!0.58!4.88!FOXJ2;;chr11:65686776..65686787,+!p9@DRAP1!0.58!3.49!DRAP1;;chr12:115122005..115122016,-!p3@TBX3!0.58!3.49!TBX3;;chr10:131762504..131762555,-!p1@EBF3!0.58!2.79!EBF3;;chr1:170632250..170632277,+!p7@PRRX1!0.58!2.79!PRRX1;;chr7:27169801..27169844,-!p2@HOXA4!0.58!2.79!HOXA4;;chr7:27183291..27183324,-!p1@HOXA5!0.58!2.79!HOXA5;;chr2:214016899..214016926,-!p10@IKZF2!0.58!2.79!IKZF2;;chr3:168864383..168864400,-!p7@MECOM!0.58!2.79!MECOM;;chr4:174451350..174451363,-!p3@HAND2!0.58!2.79!HAND2;;chr16:31076332..31076388,-!p3@ZNF668!0.58!2.79!ZNF668;;chr12:52445218..52445237,+!p1@NR4A1!0.57!42.52!NR4A1;;chr17:3571887..3571918,-!p2@TAX1BP3!0.57!37.64!TAX1BP3;;chr17:1958388..1958404,+!p1@HIC1!0.57!20.91!HIC1;;chr19:52074502..52074587,+!p1@ZNF175!0.57!11.85!ZNF175;;chr6:1312325..1312340,+!p1@FOXQ1!0.57!4.88!FOXQ1;;chr3:52001448..52001478,-!p2@PCBP4!0.56!45.31!PCBP4;;chr1:164528445..164528459,+!p2@PBX1!0.56!9.76!PBX1;;chr2:71127699..71127744,+!p1@VAX2!0.56!6.27!VAX2;;chr19:3366625..3366629,+!p4@NFIC!0.56!4.18!NFIC;;chr1:151032739..151032748,+!p6@MLLT11!0.56!3.49!MLLT11;;chr11:65686855..65686946,+!p1@DRAP1!0.55!242.57!DRAP1;;chr8:77593474..77593612,+!p1@ZFHX4!0.55!13.24!ZFHX4;;chr11:65430554..65430579,-!p3@RELA!0.55!7.67!RELA;;chr17:59477197..59477212,+!p2@TBX2!0.55!4.88!TBX2;;chr12:66218573..66218596,+!p7@HMGA2!0.55!4.18!HMGA2;;chr7:137686552..137686564,-!p9@CREB3L2!0.55!4.18!CREB3L2;;chr6:35310395..35310410,+!p2@PPARD!0.54!11.85!PPARD;;chr19:45260775..45260838,+!p5@BCL3!0.54!3.49!BCL3;;chr3:178789522..178789564,-!p2@ZMAT3!0.53!22.31!ZMAT3;;chr12:27485785..27485816,+!p1@ARNTL2!0.53!20.91!ARNTL2;;chr7:14029283..14029311,-!p1@ETV1!0.53!16.03!ETV1;;chr16:8962202..8962222,-!p3@CARHSP1!0.53!4.88!CARHSP1;;chr18:19749517..19749531,+!p3@GATA6!0.53!4.88!GATA6;;chr19:13134457..13134462,+!p5@NFIX!0.53!4.88!NFIX;;chr20:50721803..50721857,-!p2@ZFP64!0.53!4.18!ZFP64;;chr11:46299186..46299195,+!p3@CREB3L1!0.53!2.79!CREB3L1;;chr8:72756637..72756664,-!p3@MSC!0.53!2.79!MSC;;chr1:23885981..23886002,-!p1@ID3!0.52!529.05!ID3;;chr7:19157043..19157088,-!p2@TWIST1!0.52!6.97!TWIST1;;chr7:44143978..44143989,+!p2@AEBP1!0.52!4.88!AEBP1;;chr15:96869255..96869291,+!p6@NR2F2!0.52!4.88!NR2F2;;chr15:96874063..96874074,+!p10@NR2F2!0.52!4.88!NR2F2;;chr4:81105027..81105039,+!p3@PRDM8!0.52!2.79!PRDM8;;chr10:77161504..77161530,-!p1@ZNF503!0.51!39.03!ZNF503;;chr21:36259445..36259519,-!p4@RUNX1!0.51!7.67!RUNX1;;chr6:10412600..10412637,-!p1@TFAP2A!0.51!4.18!TFAP2A;;chr3:168864315..168864339,-!p2@MECOM!0.51!4.18!MECOM;;chr10:35484804..35484902,+!p2@CREM!0.50!10.46!CREM;;chr12:66218183..66218209,+!p4@HMGA2!0.50!4.88!HMGA2;;chr12:54447599..54447630,+!p3@HOXC4!0.50!2.79!HOXC4;;chr4:2263809..2263854,-!p1@MXD4!0.49!108.74!MXD4;;chr19:45251943..45252006,+!p1@BCL3!0.49!73.89!BCL3;;chr11:62368696..62368759,-!p4@MTA2!0.49!16.73!MTA2;;chr2:66662281..66662308,+!p1@MEIS1!0.49!9.06!MEIS1;;chr4:81104895..81104920,+!p2@PRDM8!0.49!3.49!PRDM8;;chr19:38720294..38720348,-!p1@DPF1!0.49!2.79!DPF1;;chr1:170632137..170632172,+!p10@PRRX1!0.49!2.09!PRRX1;;chr1:170633225..170633230,+!p25@PRRX1!0.49!2.09!PRRX1;;chr2:85981008..85981025,+!p7@ATOH8!0.49!2.09!ATOH8;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| |expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.97!92.71!SOX17;;chr6:134210243..134210257,+!p1@TCF21!1.65!43.22!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!1.49!36.94!FOXF1;;chr11:46299199..46299233,+!p1@CREB3L1!1.39!119.19!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.39!32.06!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!1.38!23.00!HAND2;;chr11:65686802..65686818,+!p6@DRAP1!1.37!38.34!DRAP1;;chr2:239756671..239756732,+!p1@TWIST2!1.30!59.25!TWIST2;;chr20:6748325..6748352,+!p1@BMP2!1.30!27.18!BMP2;;chr11:46299539..46299620,+!p2@CREB3L1!1.28!29.97!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!1.28!20.21!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.27!514.41!HMGA1;;chr9:132427972..132428056,+!p1@PRRX2!1.22!20.21!PRRX2;;chr1:170633262..170633285,+!p3@PRRX1!1.21!17.43!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!1.21!15.33!HAND2;;chr11:65687362..65687436,+!p3@DRAP1!1.17!62.73!DRAP1;;chr11:65686732..65686756,+!p2@DRAP1!1.17!58.55!DRAP1;;chr10:94449703..94449718,+!p1@HHEX!1.17!52.97!HHEX;;chr9:132427883..132427951,+!p2@PRRX2!1.17!13.94!PRRX2;;chr5:72744594..72744609,-!p1@FOXD1!1.16!61.34!FOXD1;;chr11:34642612..34642646,+!p1@EHF!1.15!13.24!EHF;;chr11:65667884..65667895,-!p2@FOSL1!1.14!49.49!FOSL1;;chrY:2803415..2803468,+!p1@ZFY!1.13!12.55!ZFY;;chr5:72744445..72744466,-!p2@FOXD1!1.12!20.21!FOXD1;;chr2:102091566..102091581,-!p1@RFX8!1.11!11.85!RFX8;;chr11:65667846..65667868,-!p1@FOSL1!1.07!287.18!FOSL1;;chr18:53068911..53068935,-!p4@TCF4!1.06!11.85!TCF4;;chr2:239756739..239756755,+!p2@TWIST2!1.03!16.73!TWIST2;;chr16:86600426..86600441,+!p1@FOXC2!1.02!23.70!FOXC2;;chr1:170633058..170633084,+!p5@PRRX1!1.00!9.06!PRRX1;;chr15:67418119..67418162,+!p5@SMAD3!0.99!9.76!SMAD3;;chr12:66218836..66218888,+!p1@HMGA2!0.98!81.55!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!0.96!23.00!OSR1;;chr15:57511609..57511651,+!p2@TCF12!0.96!13.94!TCF12;;chr15:83953397..83953425,-!p1@BNC1!0.95!9.06!BNC1;;chr12:124873852..124873881,-!p3@NCOR2!0.94!48.10!NCOR2;;chr2:121493425..121493474,+!p1@GLI2!0.94!17.43!GLI2;;chrY:21906594..21906622,-!p1@KDM5D!0.94!7.67!KDM5D;;chr7:35293685..35293718,-!p1@TBX20!0.94!7.67!TBX20;;chr11:65687158..65687216,+!p4@DRAP1!0.93!44.61!DRAP1;;chr9:35732647..35732678,+!p2@CREB3!0.92!41.82!CREB3;;chr19:13134772..13134822,+!p2@NFIX!0.90!10.46!NFIX;;chr17:46671108..46671147,-!p1@HOXB5!0.90!6.97!HOXB5;;chr1:170632477..170632506,+!p6@PRRX1!0.90!6.97!PRRX1;;chr15:96869114..96869160,+!p11@NR2F2!0.88!9.06!NR2F2;;chr11:65687222..65687240,+!p7@DRAP1!0.87!8.36!DRAP1;;chr11:120107344..120107351,+!p1@POU2F3!0.86!7.67!POU2F3;;chr12:66218923..66218934,+!p14@HMGA2!0.86!6.27!HMGA2;;chr2:102091478..102091490,-!p3@RFX8!0.86!6.27!RFX8;;chr12:124873357..124873401,-!p1@NCOR2!0.85!75.98!NCOR2;;chr17:59477233..59477263,+!p1@TBX2!0.84!19.52!TBX2;;chr17:46622070..46622109,-!p1@HOXB2!0.84!13.94!HOXB2;;chr17:46622114..46622138,-!p4@HOXB2!0.83!9.06!HOXB2;;chr12:66218255..66218304,+!p3@HMGA2!0.82!16.03!HMGA2;;chr19:31840130..31840160,-!p2@TSHZ3!0.82!9.06!TSHZ3;;chr18:19749386..19749404,+!p2@GATA6!0.82!8.36!GATA6;;chr1:170632115..170632136,+!p9@PRRX1!0.82!5.58!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.82!5.58!PRRX1;;chr7:27153454..27153469,-!p2@HOXA3!0.82!5.58!HOXA3;;chr6:34204672..34204692,+!p1@HMGA1!0.81!665.67!HMGA1;;chr7:137686763..137686784,-!p5@CREB3L2!0.81!9.76!CREB3L2;;chr12:115121962..115121987,-!p1@TBX3!0.80!48.10!TBX3;;chr2:121493492..121493537,+!p2@GLI2!0.80!9.06!GLI2;;chr12:27485762..27485776,+!p3@ARNTL2!0.79!14.64!ARNTL2;;chr17:1959369..1959388,+!p2@HIC1!0.79!14.64!HIC1;;chr8:145159846..145159889,+!p6@MAF1!0.79!7.67!MAF1;;chr19:13136130..13136165,+!p6@NFIX!0.79!6.97!NFIX;;chr17:46621937..46621966,-!p2@HOXB2!0.78!14.64!HOXB2;;chr9:35732592..35732640,+!p1@CREB3!0.77!71.79!CREB3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.77!66.92!ZC3H12A;;chr12:53614115..53614154,-!p1@RARG!0.77!28.58!RARG;;chr12:66218598..66218645,+!p2@HMGA2!0.77!24.40!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!0.77!16.73!GATA6;;chr4:26322267..26322334,+!p3@RBPJ!0.77!12.55!RBPJ;;chr5:72744562..72744573,-!p3@FOXD1!0.77!6.27!FOXD1;;chr2:102091144..102091183,-!p2@RFX8!0.77!4.88!RFX8;;chr18:3448455..3448480,+!p5@TGIF1!0.75!9.06!TGIF1;;chr12:66218212..66218244,+!p5@HMGA2!0.75!6.97!HMGA2;;chr14:62162285..62162296,+!p3@HIF1A!0.74!25.79!HIF1A;;chr11:65687243..65687276,+!p8@DRAP1!0.74!6.27!DRAP1;;chr15:67418047..67418093,+!p4@SMAD3!0.72!5.58!SMAD3;;chr6:34204973..34204990,+!p4@HMGA1!0.71!62.73!HMGA1;;chr3:5021268..5021282,+!p4@BHLHE40!0.71!9.06!BHLHE40;;chr3:141087562..141087594,+!p12@ZBTB38!0.71!4.18!ZBTB38;;chr3:25470156..25470227,+!p2@RARB!0.71!4.18!RARB;;chr5:72744336..72744359,-!p5@FOXD1!0.71!4.18!FOXD1;;chr8:25902876..25902936,-!p1@EBF2!0.71!4.18!EBF2;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.18!CREB3L1;;chr12:115122318..115122331,-!p2@TBX3!0.71!4.18!TBX3;;chr12:66218904..66218913,+!p11@HMGA2!0.71!4.18!HMGA2;;chr5:72743793..72743855,-!p4@FOXD1!0.70!4.88!FOXD1;;chr14:62162258..62162269,+!p2@HIF1A!0.69!43.22!HIF1A;;chr3:141087393..141087426,+!p3@ZBTB38!0.69!17.43!ZBTB38;;chr22:38598086..38598105,+!p1@MAFF!0.68!46.00!MAFF;;chr1:170632959..170632987,+!p4@PRRX1!0.68!4.18!PRRX1;;chr11:65686952..65686975,+!p5@DRAP1!0.67!23.00!DRAP1;;chr5:321810..321877,+!p1@AHRR!0.67!13.24!AHRR;;chr21:36260343..36260402,-!p6@RUNX1!0.67!6.27!RUNX1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.66!295.54!TAX1BP3;;chr15:42749722..42749739,-!p2@ZFP106!0.66!6.97!ZFP106;;chr2:200322654..200322707,-!p2@SATB2!0.66!5.58!SATB2;;chr10:94449675..94449694,+!p2@HHEX!0.65!10.46!HHEX;;chr14:61191018..61191048,-!p1@SIX4!0.65!8.36!SIX4;;chr17:41622765..41622821,-!p2@ETV4!0.65!5.58!ETV4;;chr17:59477275..59477286,+!p3@TBX2!0.65!4.88!TBX2;;chr15:67458491..67458505,+!p18@SMAD3!0.65!3.49!SMAD3;;chr15:96869165..96869183,+!p20@NR2F2!0.65!3.49!NR2F2;;chr16:86600458..86600461,+!p3@FOXC2!0.65!3.49!FOXC2;;chr19:13135582..13135600,+!p3@NFIX!0.65!3.49!NFIX;;chr12:54447637..54447659,+!p4@HOXC4!0.65!3.49!HOXC4;;chr7:1577899..1577943,+!p3@MAFK!0.65!3.49!MAFK;;chr7:27153590..27153608,-!p7@HOXA3!0.65!3.49!HOXA3;;chr19:47523058..47523114,+!p1@NPAS1!0.65!3.49!NPAS1;;chr1:170632762..170632786,+!p13@PRRX1!0.65!3.49!PRRX1;;chr12:66218378..66218401,+!p6@HMGA2!0.64!5.58!HMGA2;;chr8:106330656..106330684,+!p1@ZFPM2!0.63!9.76!ZFPM2;;chr2:185463247..185463263,+!p1@ZNF804A!0.63!6.27!ZNF804A;;chr12:26277929..26277955,-!p3@BHLHE41!0.63!4.88!BHLHE41;;chr7:44143925..44143970,+!p1@AEBP1!0.62!85.04!AEBP1;;chr1:151032860..151032918,+!p1@MLLT11!0.62!44.61!MLLT11;;chr14:24837368..24837401,+!p1@NFATC4!0.62!8.36!NFATC4;;chr21:36260295..36260310,-!p3@RUNX1!0.62!5.58!RUNX1;;chr15:96869292..96869320,+!p15@NR2F2!0.62!4.88!NR2F2;;chr20:30193083..30193098,+!p1@ID1!0.61!304.61!ID1;;chr19:31840313..31840380,-!p1@TSHZ3!0.61!9.06!TSHZ3;;chr3:141121847..141121868,+!p5@ZBTB38!0.60!4.88!ZBTB38;;chr10:77161533..77161546,-!p2@ZNF503!0.58!13.24!ZNF503;;chr12:8185346..8185360,+!p2@FOXJ2!0.58!4.88!FOXJ2;;chr11:65686776..65686787,+!p9@DRAP1!0.58!3.49!DRAP1;;chr12:115122005..115122016,-!p3@TBX3!0.58!3.49!TBX3;;chr10:131762504..131762555,-!p1@EBF3!0.58!2.79!EBF3;;chr1:170632250..170632277,+!p7@PRRX1!0.58!2.79!PRRX1;;chr7:27169801..27169844,-!p2@HOXA4!0.58!2.79!HOXA4;;chr7:27183291..27183324,-!p1@HOXA5!0.58!2.79!HOXA5;;chr2:214016899..214016926,-!p10@IKZF2!0.58!2.79!IKZF2;;chr3:168864383..168864400,-!p7@MECOM!0.58!2.79!MECOM;;chr4:174451350..174451363,-!p3@HAND2!0.58!2.79!HAND2;;chr16:31076332..31076388,-!p3@ZNF668!0.58!2.79!ZNF668;;chr12:52445218..52445237,+!p1@NR4A1!0.57!42.52!NR4A1;;chr17:3571887..3571918,-!p2@TAX1BP3!0.57!37.64!TAX1BP3;;chr17:1958388..1958404,+!p1@HIC1!0.57!20.91!HIC1;;chr19:52074502..52074587,+!p1@ZNF175!0.57!11.85!ZNF175;;chr6:1312325..1312340,+!p1@FOXQ1!0.57!4.88!FOXQ1;;chr3:52001448..52001478,-!p2@PCBP4!0.56!45.31!PCBP4;;chr1:164528445..164528459,+!p2@PBX1!0.56!9.76!PBX1;;chr2:71127699..71127744,+!p1@VAX2!0.56!6.27!VAX2;;chr19:3366625..3366629,+!p4@NFIC!0.56!4.18!NFIC;;chr1:151032739..151032748,+!p6@MLLT11!0.56!3.49!MLLT11;;chr11:65686855..65686946,+!p1@DRAP1!0.55!242.57!DRAP1;;chr8:77593474..77593612,+!p1@ZFHX4!0.55!13.24!ZFHX4;;chr11:65430554..65430579,-!p3@RELA!0.55!7.67!RELA;;chr17:59477197..59477212,+!p2@TBX2!0.55!4.88!TBX2;;chr12:66218573..66218596,+!p7@HMGA2!0.55!4.18!HMGA2;;chr7:137686552..137686564,-!p9@CREB3L2!0.55!4.18!CREB3L2;;chr6:35310395..35310410,+!p2@PPARD!0.54!11.85!PPARD;;chr19:45260775..45260838,+!p5@BCL3!0.54!3.49!BCL3;;chr3:178789522..178789564,-!p2@ZMAT3!0.53!22.31!ZMAT3;;chr12:27485785..27485816,+!p1@ARNTL2!0.53!20.91!ARNTL2;;chr7:14029283..14029311,-!p1@ETV1!0.53!16.03!ETV1;;chr16:8962202..8962222,-!p3@CARHSP1!0.53!4.88!CARHSP1;;chr18:19749517..19749531,+!p3@GATA6!0.53!4.88!GATA6;;chr19:13134457..13134462,+!p5@NFIX!0.53!4.88!NFIX;;chr20:50721803..50721857,-!p2@ZFP64!0.53!4.18!ZFP64;;chr11:46299186..46299195,+!p3@CREB3L1!0.53!2.79!CREB3L1;;chr8:72756637..72756664,-!p3@MSC!0.53!2.79!MSC;;chr1:23885981..23886002,-!p1@ID3!0.52!529.05!ID3;;chr7:19157043..19157088,-!p2@TWIST1!0.52!6.97!TWIST1;;chr7:44143978..44143989,+!p2@AEBP1!0.52!4.88!AEBP1;;chr15:96869255..96869291,+!p6@NR2F2!0.52!4.88!NR2F2;;chr15:96874063..96874074,+!p10@NR2F2!0.52!4.88!NR2F2;;chr4:81105027..81105039,+!p3@PRDM8!0.52!2.79!PRDM8;;chr10:77161504..77161530,-!p1@ZNF503!0.51!39.03!ZNF503;;chr21:36259445..36259519,-!p4@RUNX1!0.51!7.67!RUNX1;;chr6:10412600..10412637,-!p1@TFAP2A!0.51!4.18!TFAP2A;;chr3:168864315..168864339,-!p2@MECOM!0.51!4.18!MECOM;;chr10:35484804..35484902,+!p2@CREM!0.50!10.46!CREM;;chr12:66218183..66218209,+!p4@HMGA2!0.50!4.88!HMGA2;;chr12:54447599..54447630,+!p3@HOXC4!0.50!2.79!HOXC4;;chr4:2263809..2263854,-!p1@MXD4!0.49!108.74!MXD4;;chr19:45251943..45252006,+!p1@BCL3!0.49!73.89!BCL3;;chr11:62368696..62368759,-!p4@MTA2!0.49!16.73!MTA2;;chr2:66662281..66662308,+!p1@MEIS1!0.49!9.06!MEIS1;;chr4:81104895..81104920,+!p2@PRDM8!0.49!3.49!PRDM8;;chr19:38720294..38720348,-!p1@DPF1!0.49!2.79!DPF1;;chr1:170632137..170632172,+!p10@PRRX1!0.49!2.09!PRRX1;;chr1:170633225..170633230,+!p25@PRRX1!0.49!2.09!PRRX1;;chr2:85981008..85981025,+!p7@ATOH8!0.49!2.09!ATOH8;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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002539;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000947;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 45: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.CNhs10838.11210-116A4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.CNhs10838.11210-116A4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.CNhs10838.11210-116A4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.CNhs10838.11210-116A4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.CNhs10838.11210-116A4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11210-116A4 | |id=FF:11210-116A4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000168 | ||
|is_obsolete= | |||
|library_id=CNhs10838 | |||
|library_id_phase_based=2:CNhs10838 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11210 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.GTAGAG.11210 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11210 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.GTAGAG.11210 | |||
|name=Smooth Muscle Cells - Aortic, donor0 | |name=Smooth Muscle Cells - Aortic, donor0 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 66: | ||
|profile_cagescan=NCig10018,,, | |profile_cagescan=NCig10018,,, | ||
|profile_hcage=CNhs10838,LSID700,release009,COMPLETED | |profile_hcage=CNhs10838,LSID700,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10009,,, | |profile_srnaseq=SRhi10009,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=CA354-R10a | |rna_catalog_number=CA354-R10a | ||
| Line 56: | Line 83: | ||
|rna_tube_id=116A4 | |rna_tube_id=116A4 | ||
|rna_weight_ug=25 | |rna_weight_ug=25 | ||
|rnaseq_library_id=SRhi10009.GTAGAG | |||
|sample_age=54 | |sample_age=54 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 98: | ||
|sample_ethnicity=A | |sample_ethnicity=A | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.92810188098217e-207!GO:0005737;cytoplasm;1.95272126973867e-190!GO:0043226;organelle;6.72212642977094e-155!GO:0043229;intracellular organelle;1.65337402797593e-154!GO:0043231;intracellular membrane-bound organelle;3.04106166919714e-152!GO:0043227;membrane-bound organelle;4.68456436919138e-152!GO:0044444;cytoplasmic part;5.13729152057032e-140!GO:0044422;organelle part;1.77081784299262e-130!GO:0044446;intracellular organelle part;6.77243885863462e-129!GO:0032991;macromolecular complex;6.90992386897608e-88!GO:0005515;protein binding;1.85530408385032e-78!GO:0030529;ribonucleoprotein complex;1.54994647081149e-74!GO:0044237;cellular metabolic process;2.05548507746042e-72!GO:0044238;primary metabolic process;4.39144162099673e-72!GO:0043170;macromolecule metabolic process;1.31265051179203e-64!GO:0005739;mitochondrion;7.12633054132682e-62!GO:0043233;organelle lumen;1.34776705523314e-61!GO:0031974;membrane-enclosed lumen;1.34776705523314e-61!GO:0044428;nuclear part;6.66077264011067e-55!GO:0031090;organelle membrane;9.75976645789377e-55!GO:0003723;RNA binding;3.31456666110828e-54!GO:0019538;protein metabolic process;1.73553347249673e-52!GO:0005840;ribosome;4.37792094925742e-49!GO:0006412;translation;2.71767754202027e-48!GO:0044260;cellular macromolecule metabolic process;2.54191961420359e-47!GO:0044267;cellular protein metabolic process;7.5216930889069e-47!GO:0016043;cellular component organization and biogenesis;2.73774822391697e-46!GO:0009058;biosynthetic process;2.12706687553642e-45!GO:0043234;protein complex;2.19477177529593e-45!GO:0005634;nucleus;6.76246235487281e-45!GO:0003735;structural constituent of ribosome;2.58795030868371e-44!GO:0015031;protein transport;3.84679622586048e-44!GO:0033036;macromolecule localization;8.14538424385567e-44!GO:0044429;mitochondrial part;8.6168122033927e-43!GO:0045184;establishment of protein localization;1.09073640376983e-41!GO:0005829;cytosol;3.37300034079303e-41!GO:0008104;protein localization;3.85930569843011e-41!GO:0009059;macromolecule biosynthetic process;5.15889155691623e-41!GO:0044249;cellular biosynthetic process;5.15889155691623e-41!GO:0033279;ribosomal subunit;2.34626773029584e-38!GO:0031967;organelle envelope;1.6439228099483e-37!GO:0031975;envelope;3.72052365874365e-37!GO:0006396;RNA processing;2.86962693584758e-35!GO:0031981;nuclear lumen;2.21531385530853e-34!GO:0046907;intracellular transport;3.20925488790317e-34!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.40029384361146e-29!GO:0006886;intracellular protein transport;5.05222850352502e-29!GO:0043283;biopolymer metabolic process;6.27218656356431e-29!GO:0005740;mitochondrial envelope;2.64076125408705e-28!GO:0065003;macromolecular complex assembly;6.47835547583661e-28!GO:0006996;organelle organization and biogenesis;6.89460965322464e-28!GO:0043228;non-membrane-bound organelle;3.51178724152314e-27!GO:0043232;intracellular non-membrane-bound organelle;3.51178724152314e-27!GO:0016071;mRNA metabolic process;4.23252024795221e-27!GO:0031966;mitochondrial membrane;1.25447799407829e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.12643946049956e-25!GO:0022607;cellular component assembly;3.59416080692514e-25!GO:0019866;organelle inner membrane;1.55376491791232e-24!GO:0010467;gene expression;2.2362499628022e-24!GO:0008380;RNA splicing;2.41476725816451e-24!GO:0044445;cytosolic part;5.47004526272772e-24!GO:0012505;endomembrane system;8.05322670056858e-24!GO:0005743;mitochondrial inner membrane;3.2053528856453e-23!GO:0005783;endoplasmic reticulum;4.98975539100082e-23!GO:0051649;establishment of cellular localization;5.64518095175839e-23!GO:0006397;mRNA processing;5.86803312422105e-23!GO:0051641;cellular localization;7.78020853643428e-23!GO:0006119;oxidative phosphorylation;6.39266242093597e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.4550353702335e-22!GO:0005654;nucleoplasm;3.93927028325927e-20!GO:0016462;pyrophosphatase activity;4.97049430986066e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.29773649858355e-20!GO:0005794;Golgi apparatus;5.67894384114945e-20!GO:0000166;nucleotide binding;6.45660456782922e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;6.87680115615316e-20!GO:0017111;nucleoside-triphosphatase activity;7.36991345322978e-20!GO:0006457;protein folding;8.16867732854083e-20!GO:0015935;small ribosomal subunit;9.7124969291368e-20!GO:0044455;mitochondrial membrane part;1.11552524646166e-19!GO:0006259;DNA metabolic process;1.1217468760739e-19!GO:0015934;large ribosomal subunit;1.16734937723297e-19!GO:0044432;endoplasmic reticulum part;4.69499456008922e-19!GO:0048770;pigment granule;6.47351294749256e-18!GO:0042470;melanosome;6.47351294749256e-18!GO:0005681;spliceosome;9.28084951956436e-18!GO:0031980;mitochondrial lumen;3.18663265897113e-17!GO:0005759;mitochondrial matrix;3.18663265897113e-17!GO:0005746;mitochondrial respiratory chain;5.89502770745097e-17!GO:0044451;nucleoplasm part;1.99265991398787e-16!GO:0051186;cofactor metabolic process;4.59376221591619e-16!GO:0016874;ligase activity;6.65822448526189e-16!GO:0006512;ubiquitin cycle;8.38373721550505e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.26114480908843e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.70913929871434e-15!GO:0043285;biopolymer catabolic process;1.75976975712431e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.24466384440514e-15!GO:0009057;macromolecule catabolic process;2.40442280068155e-15!GO:0044265;cellular macromolecule catabolic process;2.46670677768236e-15!GO:0007049;cell cycle;2.97471924301942e-15!GO:0006605;protein targeting;3.11849321071315e-15!GO:0032553;ribonucleotide binding;3.61317139456777e-15!GO:0032555;purine ribonucleotide binding;3.61317139456777e-15!GO:0017076;purine nucleotide binding;3.61435837560862e-15!GO:0005730;nucleolus;4.08818137253619e-15!GO:0022618;protein-RNA complex assembly;7.20414595496753e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.6473950247836e-14!GO:0003954;NADH dehydrogenase activity;1.6473950247836e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.6473950247836e-14!GO:0008134;transcription factor binding;1.88169570293508e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;2.52567017854317e-14!GO:0051082;unfolded protein binding;3.05694062118684e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.66752369754531e-14!GO:0030163;protein catabolic process;4.14665379823014e-14!GO:0048193;Golgi vesicle transport;4.41483156211146e-14!GO:0019941;modification-dependent protein catabolic process;4.5608635770863e-14!GO:0043632;modification-dependent macromolecule catabolic process;4.5608635770863e-14!GO:0044248;cellular catabolic process;5.08192215768175e-14!GO:0044257;cellular protein catabolic process;5.19170706760052e-14!GO:0016192;vesicle-mediated transport;5.55516136727504e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.84651653098785e-14!GO:0006511;ubiquitin-dependent protein catabolic process;8.22425238706102e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.00735024245249e-13!GO:0008135;translation factor activity, nucleic acid binding;2.00144692447418e-13!GO:0005761;mitochondrial ribosome;2.28768861796327e-13!GO:0000313;organellar ribosome;2.28768861796327e-13!GO:0043412;biopolymer modification;3.40537989720595e-13!GO:0005789;endoplasmic reticulum membrane;3.68127200692453e-13!GO:0042775;organelle ATP synthesis coupled electron transport;6.00491350936739e-13!GO:0042773;ATP synthesis coupled electron transport;6.00491350936739e-13!GO:0030964;NADH dehydrogenase complex (quinone);7.57816588382596e-13!GO:0045271;respiratory chain complex I;7.57816588382596e-13!GO:0005747;mitochondrial respiratory chain complex I;7.57816588382596e-13!GO:0005793;ER-Golgi intermediate compartment;1.34591473438907e-12!GO:0005524;ATP binding;2.0062212792887e-12!GO:0006732;coenzyme metabolic process;2.26261209850375e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.65175205147948e-12!GO:0009055;electron carrier activity;4.13278534962929e-12!GO:0032559;adenyl ribonucleotide binding;4.27210702586236e-12!GO:0006464;protein modification process;4.43413425450244e-12!GO:0030554;adenyl nucleotide binding;6.00356770393146e-12!GO:0022402;cell cycle process;8.0845986992e-12!GO:0000278;mitotic cell cycle;2.08079284641013e-11!GO:0009259;ribonucleotide metabolic process;2.92724567884452e-11!GO:0042254;ribosome biogenesis and assembly;5.22957126439579e-11!GO:0006163;purine nucleotide metabolic process;7.9901805204505e-11!GO:0012501;programmed cell death;8.22659401517237e-11!GO:0009150;purine ribonucleotide metabolic process;9.36654936041209e-11!GO:0003743;translation initiation factor activity;1.34424330543725e-10!GO:0006915;apoptosis;1.64056497300094e-10!GO:0005635;nuclear envelope;3.82492254357848e-10!GO:0006913;nucleocytoplasmic transport;4.68887330561232e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;5.14737277241654e-10!GO:0000375;RNA splicing, via transesterification reactions;5.14737277241654e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.14737277241654e-10!GO:0006164;purine nucleotide biosynthetic process;6.08967636653181e-10!GO:0009152;purine ribonucleotide biosynthetic process;6.96091522187635e-10!GO:0009260;ribonucleotide biosynthetic process;7.40864283232075e-10!GO:0008639;small protein conjugating enzyme activity;7.57133433532685e-10!GO:0048523;negative regulation of cellular process;8.33753430972533e-10!GO:0003712;transcription cofactor activity;8.88174972975567e-10!GO:0031965;nuclear membrane;9.09938716131097e-10!GO:0051169;nuclear transport;9.37727017318531e-10!GO:0006413;translational initiation;9.89118044375294e-10!GO:0008219;cell death;1.02389845383725e-09!GO:0016265;death;1.02389845383725e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.16025239137239e-09!GO:0043687;post-translational protein modification;1.28886038749967e-09!GO:0016887;ATPase activity;1.3556708706403e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.60654930311228e-09!GO:0004842;ubiquitin-protein ligase activity;1.61955585700579e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;1.66336610459699e-09!GO:0006974;response to DNA damage stimulus;1.78101305243984e-09!GO:0009141;nucleoside triphosphate metabolic process;2.06001464143198e-09!GO:0044431;Golgi apparatus part;2.20477970756806e-09!GO:0044453;nuclear membrane part;2.39551531207895e-09!GO:0042623;ATPase activity, coupled;2.72606296248165e-09!GO:0016491;oxidoreductase activity;2.90854876279501e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.35248220332532e-09!GO:0009144;purine nucleoside triphosphate metabolic process;3.35248220332532e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.43917829269514e-09!GO:0019787;small conjugating protein ligase activity;3.67765132988511e-09!GO:0003676;nucleic acid binding;5.39588978271942e-09!GO:0006323;DNA packaging;5.54174973259957e-09!GO:0009056;catabolic process;6.45571856835758e-09!GO:0006446;regulation of translational initiation;6.76103424921867e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.82562540318471e-09!GO:0008565;protein transporter activity;8.8323505082496e-09!GO:0017038;protein import;1.00647389657165e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.04235018043708e-08!GO:0051276;chromosome organization and biogenesis;1.07886688738961e-08!GO:0065004;protein-DNA complex assembly;1.35015595849742e-08!GO:0048519;negative regulation of biological process;1.4377461508035e-08!GO:0051726;regulation of cell cycle;1.90406213959268e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.20350529890476e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.20350529890476e-08!GO:0030120;vesicle coat;2.26284831245155e-08!GO:0030662;coated vesicle membrane;2.26284831245155e-08!GO:0016881;acid-amino acid ligase activity;2.30676554265374e-08!GO:0015986;ATP synthesis coupled proton transport;2.59810125716761e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.59810125716761e-08!GO:0000074;regulation of progression through cell cycle;2.62497303739588e-08!GO:0016604;nuclear body;2.64148579482591e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.66930666554729e-08!GO:0046034;ATP metabolic process;2.80943942062314e-08!GO:0051188;cofactor biosynthetic process;2.98568899021152e-08!GO:0003924;GTPase activity;3.09569263366133e-08!GO:0005788;endoplasmic reticulum lumen;3.41597880715894e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.53213791837515e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.53213791837515e-08!GO:0006333;chromatin assembly or disassembly;6.01740113209706e-08!GO:0005694;chromosome;6.46422682318546e-08!GO:0006399;tRNA metabolic process;7.39883388231426e-08!GO:0019829;cation-transporting ATPase activity;8.35057941156852e-08!GO:0009117;nucleotide metabolic process;8.60891379499808e-08!GO:0006281;DNA repair;9.27252940229128e-08!GO:0051246;regulation of protein metabolic process;9.98033647269195e-08!GO:0009719;response to endogenous stimulus;1.07354875272097e-07!GO:0009060;aerobic respiration;1.11884446711855e-07!GO:0048475;coated membrane;1.17479759429517e-07!GO:0030117;membrane coat;1.17479759429517e-07!GO:0006461;protein complex assembly;1.33786655309957e-07!GO:0005768;endosome;1.40361994545355e-07!GO:0000139;Golgi membrane;1.4121239950981e-07!GO:0043067;regulation of programmed cell death;1.43313706704778e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.51607736746935e-07!GO:0000087;M phase of mitotic cell cycle;1.59644905857022e-07!GO:0042981;regulation of apoptosis;1.79133982995941e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.79133982995941e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.79133982995941e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.79133982995941e-07!GO:0016740;transferase activity;1.89177383635324e-07!GO:0004386;helicase activity;1.9648548656701e-07!GO:0065002;intracellular protein transport across a membrane;1.99462033593821e-07!GO:0007067;mitosis;2.006199390545e-07!GO:0005643;nuclear pore;2.11084362356588e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.12233180467053e-07!GO:0006334;nucleosome assembly;2.23954135522126e-07!GO:0006916;anti-apoptosis;2.26667082294259e-07!GO:0043069;negative regulation of programmed cell death;2.31761039078504e-07!GO:0006364;rRNA processing;2.34944849102764e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.48154841169713e-07!GO:0043038;amino acid activation;2.67662295415117e-07!GO:0006418;tRNA aminoacylation for protein translation;2.67662295415117e-07!GO:0043039;tRNA aminoacylation;2.67662295415117e-07!GO:0008026;ATP-dependent helicase activity;2.88465268920663e-07!GO:0006260;DNA replication;2.98378479439227e-07!GO:0016787;hydrolase activity;3.07735894579786e-07!GO:0045333;cellular respiration;3.28775546451305e-07!GO:0006754;ATP biosynthetic process;3.34181819184427e-07!GO:0006753;nucleoside phosphate metabolic process;3.34181819184427e-07!GO:0016072;rRNA metabolic process;4.12929783654153e-07!GO:0043066;negative regulation of apoptosis;4.16364572742211e-07!GO:0016070;RNA metabolic process;4.98169309629993e-07!GO:0006366;transcription from RNA polymerase II promoter;5.23103828228521e-07!GO:0031497;chromatin assembly;6.78353237906625e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.18040719399283e-07!GO:0044427;chromosomal part;8.20156935075364e-07!GO:0022403;cell cycle phase;1.10921086511428e-06!GO:0046930;pore complex;1.54535137809835e-06!GO:0009108;coenzyme biosynthetic process;1.56777854508489e-06!GO:0016607;nuclear speck;1.61385583348507e-06!GO:0032446;protein modification by small protein conjugation;1.62701843586489e-06!GO:0016567;protein ubiquitination;1.67828350820939e-06!GO:0044440;endosomal part;1.8255548389318e-06!GO:0010008;endosome membrane;1.8255548389318e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.09000975012198e-06!GO:0031988;membrane-bound vesicle;2.09401271777472e-06!GO:0007005;mitochondrion organization and biogenesis;2.11643621627357e-06!GO:0000785;chromatin;2.17036678663485e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.21234856800832e-06!GO:0031252;leading edge;2.22464590383701e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.75184109403567e-06!GO:0006091;generation of precursor metabolites and energy;2.98249152750204e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.3192863164818e-06!GO:0051187;cofactor catabolic process;3.37948357132832e-06!GO:0006099;tricarboxylic acid cycle;3.98420184484883e-06!GO:0046356;acetyl-CoA catabolic process;3.98420184484883e-06!GO:0003714;transcription corepressor activity;3.98694919175615e-06!GO:0006752;group transfer coenzyme metabolic process;4.24256632255084e-06!GO:0045259;proton-transporting ATP synthase complex;4.79815016218993e-06!GO:0006793;phosphorus metabolic process;6.25681057777388e-06!GO:0006796;phosphate metabolic process;6.25681057777388e-06!GO:0006606;protein import into nucleus;6.89752457568311e-06!GO:0051170;nuclear import;7.0711308520912e-06!GO:0048522;positive regulation of cellular process;7.54328337043384e-06!GO:0005773;vacuole;7.68215092185742e-06!GO:0000151;ubiquitin ligase complex;8.0111170188247e-06!GO:0009109;coenzyme catabolic process;8.11829026890058e-06!GO:0051301;cell division;9.34426322941716e-06!GO:0015630;microtubule cytoskeleton;9.34701393207999e-06!GO:0008654;phospholipid biosynthetic process;9.62100966521637e-06!GO:0006084;acetyl-CoA metabolic process;1.00184536520111e-05!GO:0005905;coated pit;1.05272763790817e-05!GO:0006403;RNA localization;1.07398084479462e-05!GO:0005798;Golgi-associated vesicle;1.18206749196405e-05!GO:0005525;GTP binding;1.22333326692856e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.3172994465343e-05!GO:0050657;nucleic acid transport;1.32948355126366e-05!GO:0051236;establishment of RNA localization;1.32948355126366e-05!GO:0050658;RNA transport;1.32948355126366e-05!GO:0031982;vesicle;1.36431061717302e-05!GO:0044262;cellular carbohydrate metabolic process;1.6023789598581e-05!GO:0019867;outer membrane;1.63094360168472e-05!GO:0031968;organelle outer membrane;1.63094360168472e-05!GO:0016779;nucleotidyltransferase activity;1.65441386800508e-05!GO:0031410;cytoplasmic vesicle;1.65441386800508e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.6825766497722e-05!GO:0005762;mitochondrial large ribosomal subunit;1.79026087760589e-05!GO:0000315;organellar large ribosomal subunit;1.79026087760589e-05!GO:0004298;threonine endopeptidase activity;1.84714687110104e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.87586815799008e-05!GO:0031324;negative regulation of cellular metabolic process;1.99216802048407e-05!GO:0005667;transcription factor complex;2.05596780044581e-05!GO:0016853;isomerase activity;2.13426321034611e-05!GO:0005770;late endosome;2.23923861110455e-05!GO:0016310;phosphorylation;2.31551520962641e-05!GO:0045454;cell redox homeostasis;2.60777473209567e-05!GO:0006613;cotranslational protein targeting to membrane;2.83923300604476e-05!GO:0051789;response to protein stimulus;3.10590461328931e-05!GO:0006986;response to unfolded protein;3.10590461328931e-05!GO:0030867;rough endoplasmic reticulum membrane;3.3993791266549e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.44268077667421e-05!GO:0045786;negative regulation of progression through cell cycle;3.49746493704399e-05!GO:0003697;single-stranded DNA binding;3.61670680548887e-05!GO:0019843;rRNA binding;3.74354026924831e-05!GO:0033116;ER-Golgi intermediate compartment membrane;3.92754554840245e-05!GO:0016564;transcription repressor activity;4.31594017636236e-05!GO:0032561;guanyl ribonucleotide binding;5.4214938761904e-05!GO:0019001;guanyl nucleotide binding;5.4214938761904e-05!GO:0000245;spliceosome assembly;6.2288630802491e-05!GO:0005048;signal sequence binding;6.60697629608743e-05!GO:0016568;chromatin modification;7.65302707385723e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.987208493171e-05!GO:0016859;cis-trans isomerase activity;8.46746105699846e-05!GO:0005741;mitochondrial outer membrane;8.54350337941631e-05!GO:0008361;regulation of cell size;8.90404660485434e-05!GO:0000323;lytic vacuole;8.90404660485434e-05!GO:0005764;lysosome;8.90404660485434e-05!GO:0065009;regulation of a molecular function;9.27089182248994e-05!GO:0015980;energy derivation by oxidation of organic compounds;9.51163965929576e-05!GO:0050794;regulation of cellular process;9.70738752524433e-05!GO:0003713;transcription coactivator activity;9.91898348620058e-05!GO:0005769;early endosome;9.97716805182541e-05!GO:0009892;negative regulation of metabolic process;0.000102897109051731!GO:0007243;protein kinase cascade;0.000107815823686511!GO:0016563;transcription activator activity;0.000113113496255011!GO:0009165;nucleotide biosynthetic process;0.000123828884945984!GO:0016049;cell growth;0.000127590276027254!GO:0030029;actin filament-based process;0.000130275996397368!GO:0000279;M phase;0.000139297341527102!GO:0043566;structure-specific DNA binding;0.000139340488040147!GO:0003724;RNA helicase activity;0.000176229010560628!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000188970520014975!GO:0001558;regulation of cell growth;0.000196730578774532!GO:0000786;nucleosome;0.000229716809020235!GO:0046474;glycerophospholipid biosynthetic process;0.00023752487375716!GO:0005813;centrosome;0.000237965378429894!GO:0043623;cellular protein complex assembly;0.00024303955766636!GO:0051028;mRNA transport;0.000250851529582508!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000275743995874421!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000297199346063913!GO:0007010;cytoskeleton organization and biogenesis;0.000307251232535086!GO:0019899;enzyme binding;0.000309530842458205!GO:0005885;Arp2/3 protein complex;0.000320229583830031!GO:0051329;interphase of mitotic cell cycle;0.000320923189813273!GO:0016044;membrane organization and biogenesis;0.00033500676871454!GO:0008047;enzyme activator activity;0.000338889378862657!GO:0030663;COPI coated vesicle membrane;0.000389454077571975!GO:0030126;COPI vesicle coat;0.000389454077571975!GO:0030133;transport vesicle;0.000390466099725332!GO:0003899;DNA-directed RNA polymerase activity;0.000445626986318546!GO:0005815;microtubule organizing center;0.000501822027546544!GO:0008250;oligosaccharyl transferase complex;0.000502020773363587!GO:0048518;positive regulation of biological process;0.000549334611571606!GO:0007264;small GTPase mediated signal transduction;0.000549334611571606!GO:0043021;ribonucleoprotein binding;0.000594480702846218!GO:0006612;protein targeting to membrane;0.00059533668783742!GO:0042802;identical protein binding;0.000598402986396936!GO:0000314;organellar small ribosomal subunit;0.000600880250660625!GO:0005763;mitochondrial small ribosomal subunit;0.000600880250660625!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000602150758860088!GO:0004576;oligosaccharyl transferase activity;0.000619519484962445!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000642513146787352!GO:0030137;COPI-coated vesicle;0.00075661226322942!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000798810927596802!GO:0051325;interphase;0.000804058686043727!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00080924498493049!GO:0046467;membrane lipid biosynthetic process;0.000884127021335906!GO:0006950;response to stress;0.000919220643139412!GO:0006414;translational elongation;0.000976591703899517!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000987664965178222!GO:0051920;peroxiredoxin activity;0.001015407885087!GO:0046489;phosphoinositide biosynthetic process;0.00104651026212938!GO:0030176;integral to endoplasmic reticulum membrane;0.00104651026212938!GO:0018196;peptidyl-asparagine modification;0.00112801830872439!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00112801830872439!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00117252021688664!GO:0015399;primary active transmembrane transporter activity;0.00117252021688664!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00119164885750138!GO:0051427;hormone receptor binding;0.00131564865274313!GO:0043681;protein import into mitochondrion;0.00141004301793202!GO:0005819;spindle;0.00147436153817738!GO:0048487;beta-tubulin binding;0.00156313059223208!GO:0043284;biopolymer biosynthetic process;0.00158423166452575!GO:0030132;clathrin coat of coated pit;0.00168292411224282!GO:0008610;lipid biosynthetic process;0.00172075163795722!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00177383548730823!GO:0006626;protein targeting to mitochondrion;0.00177811384475376!GO:0015992;proton transport;0.00182582029072636!GO:0008632;apoptotic program;0.00190645938695227!GO:0051168;nuclear export;0.00194806927462174!GO:0016481;negative regulation of transcription;0.001966200543398!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00198106801243301!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00202270653588375!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00202270653588375!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00202270653588375!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00215072698947846!GO:0006818;hydrogen transport;0.00225195788881378!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00236626538559569!GO:0030658;transport vesicle membrane;0.00244579130255705!GO:0048468;cell development;0.00249092449416055!GO:0031072;heat shock protein binding;0.00249092449416055!GO:0035257;nuclear hormone receptor binding;0.00249452640452336!GO:0005791;rough endoplasmic reticulum;0.00251612085285136!GO:0006082;organic acid metabolic process;0.00257871730629452!GO:0050789;regulation of biological process;0.00263999168782614!GO:0019752;carboxylic acid metabolic process;0.00264238854224092!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00266326774298275!GO:0008092;cytoskeletal protein binding;0.00266326774298275!GO:0007006;mitochondrial membrane organization and biogenesis;0.00278765794788385!GO:0030880;RNA polymerase complex;0.00285074891277376!GO:0008186;RNA-dependent ATPase activity;0.00314974864625351!GO:0045941;positive regulation of transcription;0.00336853550529959!GO:0006261;DNA-dependent DNA replication;0.00340797460235422!GO:0030134;ER to Golgi transport vesicle;0.00388086665620979!GO:0001726;ruffle;0.00388166351163097!GO:0006839;mitochondrial transport;0.00388601974360311!GO:0017166;vinculin binding;0.00395253754596897!GO:0030027;lamellipodium;0.00395742364629355!GO:0030118;clathrin coat;0.0041418829838414!GO:0030659;cytoplasmic vesicle membrane;0.00416314156053175!GO:0040008;regulation of growth;0.00445495116975535!GO:0000059;protein import into nucleus, docking;0.00446801282807482!GO:0009967;positive regulation of signal transduction;0.0044977551927573!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00455779169238766!GO:0006891;intra-Golgi vesicle-mediated transport;0.00481450628058977!GO:0048500;signal recognition particle;0.00485914285037688!GO:0006979;response to oxidative stress;0.00488639995253219!GO:0005096;GTPase activator activity;0.00514426988635801!GO:0050790;regulation of catalytic activity;0.00514426988635801!GO:0051252;regulation of RNA metabolic process;0.00514426988635801!GO:0030127;COPII vesicle coat;0.00514426988635801!GO:0012507;ER to Golgi transport vesicle membrane;0.00514426988635801!GO:0007050;cell cycle arrest;0.00526195566467874!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00526195566467874!GO:0015002;heme-copper terminal oxidase activity;0.00526195566467874!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00526195566467874!GO:0004129;cytochrome-c oxidase activity;0.00526195566467874!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00540887763070771!GO:0008139;nuclear localization sequence binding;0.00544280878052947!GO:0044452;nucleolar part;0.00545020038572233!GO:0000082;G1/S transition of mitotic cell cycle;0.00555461645982643!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00564322368031916!GO:0006740;NADPH regeneration;0.00564746604239082!GO:0006098;pentose-phosphate shunt;0.00564746604239082!GO:0045045;secretory pathway;0.00570636021577824!GO:0006118;electron transport;0.00585443782542764!GO:0045893;positive regulation of transcription, DNA-dependent;0.00602018241001026!GO:0043492;ATPase activity, coupled to movement of substances;0.00622650963194812!GO:0048471;perinuclear region of cytoplasm;0.0062404231093938!GO:0006509;membrane protein ectodomain proteolysis;0.0062672455626764!GO:0033619;membrane protein proteolysis;0.0062672455626764!GO:0016126;sterol biosynthetic process;0.00629745643814196!GO:0006007;glucose catabolic process;0.00631378969146846!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00631944880348151!GO:0000428;DNA-directed RNA polymerase complex;0.00631944880348151!GO:0043433;negative regulation of transcription factor activity;0.00634651563143777!GO:0030660;Golgi-associated vesicle membrane;0.00639617113509839!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00646349620652591!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00646349620652591!GO:0007242;intracellular signaling cascade;0.0065988852191258!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00700144298132793!GO:0006650;glycerophospholipid metabolic process;0.00713384719152968!GO:0004004;ATP-dependent RNA helicase activity;0.00736042870569822!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00742207818097544!GO:0003678;DNA helicase activity;0.00781802032076551!GO:0044433;cytoplasmic vesicle part;0.00803074327210394!GO:0043488;regulation of mRNA stability;0.0081047802136219!GO:0043487;regulation of RNA stability;0.0081047802136219!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00839465735418054!GO:0006383;transcription from RNA polymerase III promoter;0.00845549102749572!GO:0030041;actin filament polymerization;0.00853198767451336!GO:0022890;inorganic cation transmembrane transporter activity;0.00853491383406658!GO:0007040;lysosome organization and biogenesis;0.00870101790409121!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00919097190250654!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00932383177870492!GO:0050662;coenzyme binding;0.00942375416050958!GO:0015631;tubulin binding;0.00942375416050958!GO:0007051;spindle organization and biogenesis;0.00962557482297251!GO:0004177;aminopeptidase activity;0.00988349718072852!GO:0005774;vacuolar membrane;0.0103594598635085!GO:0031418;L-ascorbic acid binding;0.0104216607956057!GO:0007033;vacuole organization and biogenesis;0.0105307633519399!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0105344810958564!GO:0031543;peptidyl-proline dioxygenase activity;0.0107239194164334!GO:0005862;muscle thin filament tropomyosin;0.0107990480230989!GO:0006595;polyamine metabolic process;0.0109694254971186!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.01127296295637!GO:0045047;protein targeting to ER;0.01127296295637!GO:0019318;hexose metabolic process;0.01127296295637!GO:0005874;microtubule;0.0112828346100865!GO:0006497;protein amino acid lipidation;0.0113388920392711!GO:0003729;mRNA binding;0.0114399459993126!GO:0005975;carbohydrate metabolic process;0.0117170774556274!GO:0046483;heterocycle metabolic process;0.0117233780218102!GO:0030521;androgen receptor signaling pathway;0.0120216658912669!GO:0005869;dynactin complex;0.0120419858068549!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.012113041693451!GO:0005996;monosaccharide metabolic process;0.012330004072048!GO:0048144;fibroblast proliferation;0.012330004072048!GO:0048145;regulation of fibroblast proliferation;0.012330004072048!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0123902381144234!GO:0046519;sphingoid metabolic process;0.0125028934765562!GO:0031625;ubiquitin protein ligase binding;0.012620052913803!GO:0031902;late endosome membrane;0.0129632448925765!GO:0008180;signalosome;0.0132602388404604!GO:0006778;porphyrin metabolic process;0.0132602388404604!GO:0033013;tetrapyrrole metabolic process;0.0132602388404604!GO:0003746;translation elongation factor activity;0.0133916809058687!GO:0005684;U2-dependent spliceosome;0.0134141696813412!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0135010757095041!GO:0012506;vesicle membrane;0.013991836995453!GO:0019206;nucleoside kinase activity;0.0140317046306129!GO:0030125;clathrin vesicle coat;0.0140938778690226!GO:0030665;clathrin coated vesicle membrane;0.0140938778690226!GO:0051287;NAD binding;0.0142270019025957!GO:0008312;7S RNA binding;0.0145084427031985!GO:0006611;protein export from nucleus;0.0146363562167588!GO:0008094;DNA-dependent ATPase activity;0.0149727442240665!GO:0006897;endocytosis;0.0154327180506105!GO:0010324;membrane invagination;0.0154327180506105!GO:0006289;nucleotide-excision repair;0.0160030807290066!GO:0005832;chaperonin-containing T-complex;0.0163573684574103!GO:0035258;steroid hormone receptor binding;0.0164189918222783!GO:0006506;GPI anchor biosynthetic process;0.0167029201131895!GO:0032940;secretion by cell;0.0173827334641115!GO:0003711;transcription elongation regulator activity;0.0174965996315013!GO:0006695;cholesterol biosynthetic process;0.0176543472443658!GO:0008283;cell proliferation;0.0176555623138011!GO:0016197;endosome transport;0.0179144592216638!GO:0033673;negative regulation of kinase activity;0.0179789853128024!GO:0006469;negative regulation of protein kinase activity;0.0179789853128024!GO:0019798;procollagen-proline dioxygenase activity;0.0182009337667073!GO:0000075;cell cycle checkpoint;0.0183389782820214!GO:0003684;damaged DNA binding;0.0184500609228118!GO:0051539;4 iron, 4 sulfur cluster binding;0.0188293021405319!GO:0006520;amino acid metabolic process;0.0188293021405319!GO:0042168;heme metabolic process;0.0189611664714196!GO:0051540;metal cluster binding;0.0190304857507883!GO:0051536;iron-sulfur cluster binding;0.0190304857507883!GO:0000209;protein polyubiquitination;0.0190679682785128!GO:0050811;GABA receptor binding;0.0197205582847406!GO:0045892;negative regulation of transcription, DNA-dependent;0.0199631107753064!GO:0006352;transcription initiation;0.0200414737946134!GO:0016408;C-acyltransferase activity;0.0201288498720057!GO:0048146;positive regulation of fibroblast proliferation;0.0202526349008295!GO:0031529;ruffle organization and biogenesis;0.0209905175152829!GO:0044437;vacuolar part;0.0210016189972584!GO:0006402;mRNA catabolic process;0.0211027811182017!GO:0000049;tRNA binding;0.0211447947711806!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0211878345453006!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0211878345453006!GO:0051348;negative regulation of transferase activity;0.0215048237091892!GO:0035035;histone acetyltransferase binding;0.0217039702202734!GO:0000030;mannosyltransferase activity;0.0217516781017352!GO:0030119;AP-type membrane coat adaptor complex;0.0220692797105762!GO:0008243;plasminogen activator activity;0.0225607394077414!GO:0006417;regulation of translation;0.0228089551472094!GO:0006458;'de novo' protein folding;0.0228895966833607!GO:0051084;'de novo' posttranslational protein folding;0.0228895966833607!GO:0016584;nucleosome positioning;0.0232159598314183!GO:0043022;ribosome binding;0.0235332149869011!GO:0006505;GPI anchor metabolic process;0.0236190348344057!GO:0016301;kinase activity;0.0239025578373168!GO:0022415;viral reproductive process;0.0242391498503404!GO:0006807;nitrogen compound metabolic process;0.0243182528660809!GO:0008033;tRNA processing;0.0246718803094002!GO:0022408;negative regulation of cell-cell adhesion;0.0261886798694383!GO:0045792;negative regulation of cell size;0.0262228547408367!GO:0008154;actin polymerization and/or depolymerization;0.0262228547408367!GO:0008538;proteasome activator activity;0.026924986964794!GO:0004674;protein serine/threonine kinase activity;0.0272507128951228!GO:0051087;chaperone binding;0.0276349981552616!GO:0031301;integral to organelle membrane;0.0279820803063321!GO:0006672;ceramide metabolic process;0.0279820803063321!GO:0048037;cofactor binding;0.0279820803063321!GO:0051052;regulation of DNA metabolic process;0.0281257264421208!GO:0001666;response to hypoxia;0.0284129915215126!GO:0016272;prefoldin complex;0.0284129915215126!GO:0030308;negative regulation of cell growth;0.0285622115169555!GO:0030145;manganese ion binding;0.0289449659627789!GO:0006739;NADP metabolic process;0.0289449659627789!GO:0006354;RNA elongation;0.0292302061981845!GO:0007265;Ras protein signal transduction;0.0292302061981845!GO:0003756;protein disulfide isomerase activity;0.0295684472257394!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0295684472257394!GO:0008022;protein C-terminus binding;0.0296836108067649!GO:0030833;regulation of actin filament polymerization;0.0296916300072972!GO:0009889;regulation of biosynthetic process;0.030522946067311!GO:0006401;RNA catabolic process;0.0308639397031738!GO:0030384;phosphoinositide metabolic process;0.0308710960623748!GO:0006892;post-Golgi vesicle-mediated transport;0.0308918555399551!GO:0042158;lipoprotein biosynthetic process;0.0310798386795793!GO:0031901;early endosome membrane;0.0312313679966607!GO:0046365;monosaccharide catabolic process;0.0312314677337385!GO:0005765;lysosomal membrane;0.0312314677337385!GO:0050681;androgen receptor binding;0.0312314677337385!GO:0032508;DNA duplex unwinding;0.0312314677337385!GO:0032392;DNA geometric change;0.0312314677337385!GO:0007030;Golgi organization and biogenesis;0.0314364586735135!GO:0032984;macromolecular complex disassembly;0.0320096145189513!GO:0051101;regulation of DNA binding;0.0328797198338529!GO:0006405;RNA export from nucleus;0.0333417966407658!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0333513789311137!GO:0006779;porphyrin biosynthetic process;0.0337356453331508!GO:0033014;tetrapyrrole biosynthetic process;0.0337356453331508!GO:0051336;regulation of hydrolase activity;0.0345612738928694!GO:0030131;clathrin adaptor complex;0.0353636166408366!GO:0030433;ER-associated protein catabolic process;0.0355667396790923!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0355667396790923!GO:0008629;induction of apoptosis by intracellular signals;0.0358870403438868!GO:0030911;TPR domain binding;0.0358870403438868!GO:0005637;nuclear inner membrane;0.035912865109917!GO:0005092;GDP-dissociation inhibitor activity;0.0359616084561461!GO:0008637;apoptotic mitochondrial changes;0.0362448379027995!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.037401504512515!GO:0031124;mRNA 3'-end processing;0.037401504512515!GO:0006984;ER-nuclear signaling pathway;0.0381086586397189!GO:0004003;ATP-dependent DNA helicase activity;0.038448539369115!GO:0005099;Ras GTPase activator activity;0.0387385813818377!GO:0046822;regulation of nucleocytoplasmic transport;0.0388963350633376!GO:0005100;Rho GTPase activator activity;0.0393432944171388!GO:0016363;nuclear matrix;0.0394657182763323!GO:0031371;ubiquitin conjugating enzyme complex;0.0396603163361703!GO:0007088;regulation of mitosis;0.0406579205659236!GO:0005657;replication fork;0.0414793642852796!GO:0001953;negative regulation of cell-matrix adhesion;0.0417089272423793!GO:0000096;sulfur amino acid metabolic process;0.0417089272423793!GO:0006769;nicotinamide metabolic process;0.04245071455293!GO:0051059;NF-kappaB binding;0.043191182182063!GO:0006096;glycolysis;0.0432725663545837!GO:0009308;amine metabolic process;0.0434395294773502!GO:0046426;negative regulation of JAK-STAT cascade;0.0436224081650176!GO:0009966;regulation of signal transduction;0.0442251116417057!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0444022973493899!GO:0019320;hexose catabolic process;0.0445274519068348!GO:0003682;chromatin binding;0.0445369209311823!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0446566873276621!GO:0007034;vacuolar transport;0.0451867330309119!GO:0031326;regulation of cellular biosynthetic process;0.0451867330309119!GO:0000339;RNA cap binding;0.0453666608453553!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0454987649206386!GO:0065007;biological regulation;0.0455670605866552!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0456016050107499!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0456016050107499!GO:0006302;double-strand break repair;0.0458965962894918!GO:0009303;rRNA transcription;0.0467560316328659!GO:0043624;cellular protein complex disassembly;0.0470783209787566!GO:0043086;negative regulation of catalytic activity;0.0472037886161228!GO:0033559;unsaturated fatty acid metabolic process;0.0472037886161228!GO:0006636;unsaturated fatty acid biosynthetic process;0.0472037886161228!GO:0045936;negative regulation of phosphate metabolic process;0.0476001100646621!GO:0006783;heme biosynthetic process;0.0477384579638061!GO:0007569;cell aging;0.0477506923746823!GO:0009893;positive regulation of metabolic process;0.0477560283763856!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0480526809809531!GO:0043241;protein complex disassembly;0.0485766610358562!GO:0003690;double-stranded DNA binding;0.048593331575769 | |||
|sample_id=11210 | |sample_id=11210 | ||
|sample_note=machine failed, remainder reloaded, low amount | |sample_note=machine failed, remainder reloaded, low amount | ||
| Line 76: | Line 106: | ||
|sample_tissue=aorta | |sample_tissue=aorta | ||
|top_motifs=GZF1:1.2794823125;PBX1:1.20439035637;POU2F1..3:1.17836141577;ZNF238:1.04593997488;GTF2A1,2:1.03977257293;CRX:1.01657912663;HIF1A:1.01653624015;XCPE1{core}:1.00342144478;EBF1:0.979147036323;HES1:0.949096433397;FOX{I1,J2}:0.940351714159;TFAP4:0.922160735311;TLX1..3_NFIC{dimer}:0.894822240588;POU6F1:0.876310027871;TBP:0.848903860323;ZBTB6:0.838752480921;POU3F1..4:0.807497044446;NFE2L1:0.796854809196;GCM1,2:0.786691518746;HOX{A5,B5}:0.752429206935;ZNF148:0.751292307725;HSF1,2:0.73005612529;EN1,2:0.7023972329;TP53:0.678954649814;CDC5L:0.668106947269;TAL1_TCF{3,4,12}:0.668061676995;TFAP2B:0.638032543999;LHX3,4:0.634658368215;ELK1,4_GABP{A,B1}:0.633380416321;PPARG:0.628961598029;NFE2L2:0.611054579755;TEAD1:0.602722517989;ONECUT1,2:0.585206240638;GFI1B:0.578407440363;SRF:0.575031547739;NFATC1..3:0.573019120096;HMX1:0.520719791531;bHLH_family:0.504725501205;BACH2:0.495636438003;FOS_FOS{B,L1}_JUN{B,D}:0.462111320897;MYBL2:0.46050942388;NKX2-2,8:0.444748446708;SPZ1:0.437403763729;TLX2:0.432011696272;NANOG:0.415362823633;ADNP_IRX_SIX_ZHX:0.414377363396;HIC1:0.413199321107;XBP1:0.399955508156;FOXL1:0.396474640618;PATZ1:0.391610771869;GTF2I:0.384182215901;ZNF423:0.374077476501;ALX4:0.372024296402;SOX17:0.355534384119;NR5A1,2:0.35390932614;NKX3-1:0.353693652679;PRRX1,2:0.347191014509;SMAD1..7,9:0.344846958349;AR:0.340722205409;HBP1_HMGB_SSRP1_UBTF:0.306779019165;JUN:0.293439631287;GLI1..3:0.288279230589;LEF1_TCF7_TCF7L1,2:0.282158072287;FOSL2:0.273892919904;MTE{core}:0.266711818494;STAT5{A,B}:0.263388223691;TFDP1:0.262665157728;IKZF1:0.260526371007;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.244002880738;EGR1..3:0.223467111558;RXRA_VDR{dimer}:0.223245920096;NR3C1:0.218145401804;VSX1,2:0.205267165717;MTF1:0.192322757029;PAX8:0.189652659578;TFCP2:0.188023925506;ZFP161:0.172705017813;NANOG{mouse}:0.163977843125;MAFB:0.16147513896;FOXM1:0.13184428287;NFE2:0.131821854549;HLF:0.129600996124;SOX{8,9,10}:0.129340281361;TBX4,5:0.123515578199;MZF1:0.122786402197;NR1H4:0.121766341269;HNF1A:0.109818743576;ESR1:0.10439064685;GFI1:0.0958866186328;NKX3-2:0.0919247385515;FOXQ1:0.0903983967489;TFAP2{A,C}:0.0896952390118;PDX1:0.0857949908176;HOX{A4,D4}:0.0847191650381;PAX5:0.0712495478465;ATF6:0.0601437277729;ARID5B:0.0553678380169;POU5F1:0.0550008522597;AHR_ARNT_ARNT2:0.0458151591014;NFIX:0.042459493298;MAZ:0.0328034031712;MED-1{core}:0.021087925213;ZNF384:0.0164058692771;SP1:0.014757563262;PAX3,7:0.0038146813329;CREB1:0.00134216366234;NKX6-1,2:-0.00549396828076;KLF4:-0.0180566026349;HOXA9_MEIS1:-0.0313288791072;MEF2{A,B,C,D}:-0.0336442120038;REST:-0.033669265516;ATF2:-0.0345041379881;DBP:-0.042262139385;CEBPA,B_DDIT3:-0.0439138934375;RXR{A,B,G}:-0.048319659864;ESRRA:-0.0518139890045;NHLH1,2:-0.0618724017166;E2F1..5:-0.0766004583232;PRDM1:-0.0788297832828;ZIC1..3:-0.0914913478487;NFIL3:-0.112994225742;GATA6:-0.116469307892;RUNX1..3:-0.117816765482;NFKB1_REL_RELA:-0.126949377959;HMGA1,2:-0.135553312668;ALX1:-0.138128490639;PAX2:-0.151730142739;YY1:-0.169811254936;ZNF143:-0.175673752138;PAX4:-0.188582377284;HAND1,2:-0.189979215907;RFX1:-0.19109058199;ELF1,2,4:-0.194945442312;NRF1:-0.204038749537;ETS1,2:-0.205437847583;DMAP1_NCOR{1,2}_SMARC:-0.206523408631;FOXN1:-0.208737771276;PAX1,9:-0.230860291076;SOX5:-0.257247527238;TOPORS:-0.265407718018;MYB:-0.281998751246;LMO2:-0.284260565839;MYFfamily:-0.286297372616;RREB1:-0.300392141989;EP300:-0.326737204448;UFEwm:-0.345115311415;HNF4A_NR2F1,2:-0.345712366297;NKX2-3_NKX2-5:-0.35055285635;OCT4_SOX2{dimer}:-0.358766783163;STAT2,4,6:-0.360367699375;PAX6:-0.361527778053;POU1F1:-0.367100415483;TGIF1:-0.405708695857;SPIB:-0.417961288975;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.450101623373;NFY{A,B,C}:-0.461535725732;SPI1:-0.463103206791;ATF5_CREB3:-0.464795282644;HOX{A6,A7,B6,B7}:-0.477113760821;GATA4:-0.503802620945;PITX1..3:-0.515801944325;SOX2:-0.528154194386;EVI1:-0.536678933774;IRF1,2:-0.55886664937;CUX2:-0.597964470014;AIRE:-0.630371415859;FOX{D1,D2}:-0.637675786144;SREBF1,2:-0.64618333895;FOX{F1,F2,J1}:-0.671366971637;TEF:-0.676688097743;RORA:-0.687966664941;RFX2..5_RFXANK_RFXAP:-0.719713450493;BREu{core}:-0.75496112602;IRF7:-0.791409282736;NR6A1:-0.791775360997;ATF4:-0.791841551181;ZEB1:-0.806645025828;SNAI1..3:-0.817318495922;STAT1,3:-0.861995668013;NKX2-1,4:-0.881517547875;MYOD1:-0.897384389708;FOXP3:-0.96361390615;FOXA2:-1.01240941566;BPTF:-1.04382841024;ZBTB16:-1.07406217124;CDX1,2,4:-1.16341883224;IKZF2:-1.17369191091;T:-1.20952707474;FOXP1:-1.21940472811;FOXO1,3,4:-1.22446070071;FOXD3:-1.6708830007;RBPJ:-1.69245140791 | |top_motifs=GZF1:1.2794823125;PBX1:1.20439035637;POU2F1..3:1.17836141577;ZNF238:1.04593997488;GTF2A1,2:1.03977257293;CRX:1.01657912663;HIF1A:1.01653624015;XCPE1{core}:1.00342144478;EBF1:0.979147036323;HES1:0.949096433397;FOX{I1,J2}:0.940351714159;TFAP4:0.922160735311;TLX1..3_NFIC{dimer}:0.894822240588;POU6F1:0.876310027871;TBP:0.848903860323;ZBTB6:0.838752480921;POU3F1..4:0.807497044446;NFE2L1:0.796854809196;GCM1,2:0.786691518746;HOX{A5,B5}:0.752429206935;ZNF148:0.751292307725;HSF1,2:0.73005612529;EN1,2:0.7023972329;TP53:0.678954649814;CDC5L:0.668106947269;TAL1_TCF{3,4,12}:0.668061676995;TFAP2B:0.638032543999;LHX3,4:0.634658368215;ELK1,4_GABP{A,B1}:0.633380416321;PPARG:0.628961598029;NFE2L2:0.611054579755;TEAD1:0.602722517989;ONECUT1,2:0.585206240638;GFI1B:0.578407440363;SRF:0.575031547739;NFATC1..3:0.573019120096;HMX1:0.520719791531;bHLH_family:0.504725501205;BACH2:0.495636438003;FOS_FOS{B,L1}_JUN{B,D}:0.462111320897;MYBL2:0.46050942388;NKX2-2,8:0.444748446708;SPZ1:0.437403763729;TLX2:0.432011696272;NANOG:0.415362823633;ADNP_IRX_SIX_ZHX:0.414377363396;HIC1:0.413199321107;XBP1:0.399955508156;FOXL1:0.396474640618;PATZ1:0.391610771869;GTF2I:0.384182215901;ZNF423:0.374077476501;ALX4:0.372024296402;SOX17:0.355534384119;NR5A1,2:0.35390932614;NKX3-1:0.353693652679;PRRX1,2:0.347191014509;SMAD1..7,9:0.344846958349;AR:0.340722205409;HBP1_HMGB_SSRP1_UBTF:0.306779019165;JUN:0.293439631287;GLI1..3:0.288279230589;LEF1_TCF7_TCF7L1,2:0.282158072287;FOSL2:0.273892919904;MTE{core}:0.266711818494;STAT5{A,B}:0.263388223691;TFDP1:0.262665157728;IKZF1:0.260526371007;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.244002880738;EGR1..3:0.223467111558;RXRA_VDR{dimer}:0.223245920096;NR3C1:0.218145401804;VSX1,2:0.205267165717;MTF1:0.192322757029;PAX8:0.189652659578;TFCP2:0.188023925506;ZFP161:0.172705017813;NANOG{mouse}:0.163977843125;MAFB:0.16147513896;FOXM1:0.13184428287;NFE2:0.131821854549;HLF:0.129600996124;SOX{8,9,10}:0.129340281361;TBX4,5:0.123515578199;MZF1:0.122786402197;NR1H4:0.121766341269;HNF1A:0.109818743576;ESR1:0.10439064685;GFI1:0.0958866186328;NKX3-2:0.0919247385515;FOXQ1:0.0903983967489;TFAP2{A,C}:0.0896952390118;PDX1:0.0857949908176;HOX{A4,D4}:0.0847191650381;PAX5:0.0712495478465;ATF6:0.0601437277729;ARID5B:0.0553678380169;POU5F1:0.0550008522597;AHR_ARNT_ARNT2:0.0458151591014;NFIX:0.042459493298;MAZ:0.0328034031712;MED-1{core}:0.021087925213;ZNF384:0.0164058692771;SP1:0.014757563262;PAX3,7:0.0038146813329;CREB1:0.00134216366234;NKX6-1,2:-0.00549396828076;KLF4:-0.0180566026349;HOXA9_MEIS1:-0.0313288791072;MEF2{A,B,C,D}:-0.0336442120038;REST:-0.033669265516;ATF2:-0.0345041379881;DBP:-0.042262139385;CEBPA,B_DDIT3:-0.0439138934375;RXR{A,B,G}:-0.048319659864;ESRRA:-0.0518139890045;NHLH1,2:-0.0618724017166;E2F1..5:-0.0766004583232;PRDM1:-0.0788297832828;ZIC1..3:-0.0914913478487;NFIL3:-0.112994225742;GATA6:-0.116469307892;RUNX1..3:-0.117816765482;NFKB1_REL_RELA:-0.126949377959;HMGA1,2:-0.135553312668;ALX1:-0.138128490639;PAX2:-0.151730142739;YY1:-0.169811254936;ZNF143:-0.175673752138;PAX4:-0.188582377284;HAND1,2:-0.189979215907;RFX1:-0.19109058199;ELF1,2,4:-0.194945442312;NRF1:-0.204038749537;ETS1,2:-0.205437847583;DMAP1_NCOR{1,2}_SMARC:-0.206523408631;FOXN1:-0.208737771276;PAX1,9:-0.230860291076;SOX5:-0.257247527238;TOPORS:-0.265407718018;MYB:-0.281998751246;LMO2:-0.284260565839;MYFfamily:-0.286297372616;RREB1:-0.300392141989;EP300:-0.326737204448;UFEwm:-0.345115311415;HNF4A_NR2F1,2:-0.345712366297;NKX2-3_NKX2-5:-0.35055285635;OCT4_SOX2{dimer}:-0.358766783163;STAT2,4,6:-0.360367699375;PAX6:-0.361527778053;POU1F1:-0.367100415483;TGIF1:-0.405708695857;SPIB:-0.417961288975;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.450101623373;NFY{A,B,C}:-0.461535725732;SPI1:-0.463103206791;ATF5_CREB3:-0.464795282644;HOX{A6,A7,B6,B7}:-0.477113760821;GATA4:-0.503802620945;PITX1..3:-0.515801944325;SOX2:-0.528154194386;EVI1:-0.536678933774;IRF1,2:-0.55886664937;CUX2:-0.597964470014;AIRE:-0.630371415859;FOX{D1,D2}:-0.637675786144;SREBF1,2:-0.64618333895;FOX{F1,F2,J1}:-0.671366971637;TEF:-0.676688097743;RORA:-0.687966664941;RFX2..5_RFXANK_RFXAP:-0.719713450493;BREu{core}:-0.75496112602;IRF7:-0.791409282736;NR6A1:-0.791775360997;ATF4:-0.791841551181;ZEB1:-0.806645025828;SNAI1..3:-0.817318495922;STAT1,3:-0.861995668013;NKX2-1,4:-0.881517547875;MYOD1:-0.897384389708;FOXP3:-0.96361390615;FOXA2:-1.01240941566;BPTF:-1.04382841024;ZBTB16:-1.07406217124;CDX1,2,4:-1.16341883224;IKZF2:-1.17369191091;T:-1.20952707474;FOXP1:-1.21940472811;FOXO1,3,4:-1.22446070071;FOXD3:-1.6708830007;RBPJ:-1.69245140791 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11210-116A4;search_select_hide=table117:FF:11210-116A4 | |||
}} | }} | ||
Latest revision as of 16:24, 3 June 2020
| Name: | Smooth Muscle Cells - Aortic, donor0 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10838 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10838
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10838
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.765 |
| 10 | 10 | 0.192 |
| 100 | 100 | 0.508 |
| 101 | 101 | 0.0308 |
| 102 | 102 | 0.494 |
| 103 | 103 | 0.785 |
| 104 | 104 | 0.477 |
| 105 | 105 | 0.484 |
| 106 | 106 | 0.439 |
| 107 | 107 | 0.519 |
| 108 | 108 | 0.428 |
| 109 | 109 | 0.432 |
| 11 | 11 | 0.619 |
| 110 | 110 | 0.898 |
| 111 | 111 | 0.0789 |
| 112 | 112 | 0.347 |
| 113 | 113 | 0.0195 |
| 114 | 114 | 0.555 |
| 115 | 115 | 0.966 |
| 116 | 116 | 0.0984 |
| 117 | 117 | 0.408 |
| 118 | 118 | 0.376 |
| 119 | 119 | 0.99 |
| 12 | 12 | 0.208 |
| 120 | 120 | 0.977 |
| 121 | 121 | 0.507 |
| 122 | 122 | 0.584 |
| 123 | 123 | 0.0457 |
| 124 | 124 | 0.421 |
| 125 | 125 | 0.811 |
| 126 | 126 | 0.672 |
| 127 | 127 | 0.951 |
| 128 | 128 | 0.822 |
| 129 | 129 | 0.862 |
| 13 | 13 | 0.113 |
| 130 | 130 | 0.0456 |
| 131 | 131 | 0.374 |
| 132 | 132 | 0.85 |
| 133 | 133 | 0.229 |
| 134 | 134 | 0.123 |
| 135 | 135 | 0.166 |
| 136 | 136 | 0.387 |
| 137 | 137 | 0.932 |
| 138 | 138 | 0.216 |
| 139 | 139 | 0.94 |
| 14 | 14 | 0.369 |
| 140 | 140 | 0.0801 |
| 141 | 141 | 0.00707 |
| 142 | 142 | 0.833 |
| 143 | 143 | 0.0612 |
| 144 | 144 | 0.627 |
| 145 | 145 | 0.214 |
| 146 | 146 | 0.397 |
| 147 | 147 | 0.29 |
| 148 | 148 | 0.219 |
| 149 | 149 | 0.545 |
| 15 | 15 | 0.866 |
| 150 | 150 | 0.304 |
| 151 | 151 | 0.991 |
| 152 | 152 | 0.00507 |
| 153 | 153 | 0.503 |
| 154 | 154 | 0.547 |
| 155 | 155 | 0.0587 |
| 156 | 156 | 0.761 |
| 157 | 157 | 0.555 |
| 158 | 158 | 0.0566 |
| 159 | 159 | 0.41 |
| 16 | 16 | 0.985 |
| 160 | 160 | 0.83 |
| 161 | 161 | 0.163 |
| 162 | 162 | 0.315 |
| 163 | 163 | 0.568 |
| 164 | 164 | 0.987 |
| 165 | 165 | 0.878 |
| 166 | 166 | 0.238 |
| 167 | 167 | 0.296 |
| 168 | 168 | 0.888 |
| 169 | 169 | 0.316 |
| 17 | 17 | 0.673 |
| 18 | 18 | 0.43 |
| 19 | 19 | 0.906 |
| 2 | 2 | 0.403 |
| 20 | 20 | 0.355 |
| 21 | 21 | 0.511 |
| 22 | 22 | 0.325 |
| 23 | 23 | 0.242 |
| 24 | 24 | 0.103 |
| 25 | 25 | 0.0746 |
| 26 | 26 | 0.219 |
| 27 | 27 | 0.793 |
| 28 | 28 | 0.179 |
| 29 | 29 | 0.425 |
| 3 | 3 | 0.765 |
| 30 | 30 | 0.171 |
| 31 | 31 | 0.91 |
| 32 | 32 | 0.304 |
| 33 | 33 | 0.663 |
| 34 | 34 | 0.409 |
| 35 | 35 | 0.534 |
| 36 | 36 | 0.196 |
| 37 | 37 | 0.922 |
| 38 | 38 | 0.982 |
| 39 | 39 | 0.252 |
| 4 | 4 | 0.983 |
| 40 | 40 | 0.745 |
| 41 | 41 | 0.517 |
| 42 | 42 | 0.973 |
| 43 | 43 | 0.729 |
| 44 | 44 | 0.302 |
| 45 | 45 | 0.589 |
| 46 | 46 | 0.975 |
| 47 | 47 | 0.525 |
| 48 | 48 | 0.934 |
| 49 | 49 | 0.195 |
| 5 | 5 | 0.732 |
| 50 | 50 | 0.178 |
| 51 | 51 | 0.951 |
| 52 | 52 | 0.971 |
| 53 | 53 | 0.124 |
| 54 | 54 | 0.981 |
| 55 | 55 | 0.244 |
| 56 | 56 | 0.796 |
| 57 | 57 | 0.656 |
| 58 | 58 | 0.108 |
| 59 | 59 | 0.35 |
| 6 | 6 | 0.24 |
| 60 | 60 | 0.5 |
| 61 | 61 | 0.364 |
| 62 | 62 | 0.0747 |
| 63 | 63 | 0.44 |
| 64 | 64 | 0.658 |
| 65 | 65 | 0.635 |
| 66 | 66 | 0.366 |
| 67 | 67 | 0.865 |
| 68 | 68 | 0.295 |
| 69 | 69 | 0.397 |
| 7 | 7 | 0.336 |
| 70 | 70 | 0.983 |
| 71 | 71 | 0.913 |
| 72 | 72 | 0.579 |
| 73 | 73 | 0.00492 |
| 74 | 74 | 0.968 |
| 75 | 75 | 0.82 |
| 76 | 76 | 0.926 |
| 77 | 77 | 0.0879 |
| 78 | 78 | 0.121 |
| 79 | 79 | 0.765 |
| 8 | 8 | 0.598 |
| 80 | 80 | 0.929 |
| 81 | 81 | 0.789 |
| 82 | 82 | 0.146 |
| 83 | 83 | 0.717 |
| 84 | 84 | 0.776 |
| 85 | 85 | 0.889 |
| 86 | 86 | 0.694 |
| 87 | 87 | 0.0243 |
| 88 | 88 | 0.176 |
| 89 | 89 | 0.569 |
| 9 | 9 | 0.385 |
| 90 | 90 | 0.746 |
| 91 | 91 | 0.805 |
| 92 | 92 | 0.901 |
| 93 | 93 | 0.793 |
| 94 | 94 | 0.915 |
| 95 | 95 | 0.53 |
| 96 | 96 | 0.556 |
| 97 | 97 | 0.269 |
| 98 | 98 | 0.337 |
| 99 | 99 | 0.00496 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10838
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000168 (human aortic smooth muscle cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
