FF:10568-108B1: Difference between revisions

Latest revision as of 14:29, 3 June 2020

Name:	mesenchymal stem cell line:Hu5/E18
Species:	Human (Homo sapiens)
Library ID:	CNhs11718
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skeletal muscle
dev stage	42 year old adult
sex	female
age	42
cell type	mesenchymal stem cell
cell line	Hu5/E18
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005180

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11718		CAGE		DRX007935		DRR008807

Accession ID Hg19

Library id		BAM		CTSS
CNhs11718		DRZ000232		DRZ001617

Accession ID Hg38

Library id		BAM		CTSS
CNhs11718		DRZ011582		DRZ012967

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0738
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.581
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.845
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.477
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0693
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.151
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.155
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.194
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.265
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.792
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.514
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.617
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.255
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.146
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.792
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.845
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.731
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.342
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.328
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11718

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.571
MA0003.1	MA0003.1	0.853
MA0004.1	MA0004.1	0.31
MA0006.1	MA0006.1	0.13
MA0007.1	MA0007.1	0.185
MA0009.1	MA0009.1	0.699
MA0014.1	MA0014.1	0.514
MA0017.1	MA0017.1	0.901
MA0018.2	MA0018.2	0.00325
MA0019.1	MA0019.1	0.212
MA0024.1	MA0024.1	9.82029e-4
MA0025.1	MA0025.1	0.00806
MA0027.1	MA0027.1	0.325
MA0028.1	MA0028.1	0.668
MA0029.1	MA0029.1	0.712
MA0030.1	MA0030.1	5.63929e-5
MA0031.1	MA0031.1	0.0292
MA0035.2	MA0035.2	0.137
MA0038.1	MA0038.1	0.305
MA0039.2	MA0039.2	0.241
MA0040.1	MA0040.1	0.564
MA0041.1	MA0041.1	0.35
MA0042.1	MA0042.1	0.539
MA0043.1	MA0043.1	3.12939e-9
MA0046.1	MA0046.1	0.00802
MA0047.2	MA0047.2	0.0106
MA0048.1	MA0048.1	0.863
MA0050.1	MA0050.1	0.00358
MA0051.1	MA0051.1	0.0207
MA0052.1	MA0052.1	0.995
MA0055.1	MA0055.1	0.792
MA0057.1	MA0057.1	0.658
MA0058.1	MA0058.1	0.239
MA0059.1	MA0059.1	0.355
MA0060.1	MA0060.1	0.00949
MA0061.1	MA0061.1	0.109
MA0062.2	MA0062.2	0.00134
MA0065.2	MA0065.2	0.364
MA0066.1	MA0066.1	0.059
MA0067.1	MA0067.1	0.0366
MA0068.1	MA0068.1	0.761
MA0069.1	MA0069.1	0.355
MA0070.1	MA0070.1	0.408
MA0071.1	MA0071.1	0.889
MA0072.1	MA0072.1	0.785
MA0073.1	MA0073.1	0.644
MA0074.1	MA0074.1	0.943
MA0076.1	MA0076.1	0.12
MA0077.1	MA0077.1	0.253
MA0078.1	MA0078.1	0.76
MA0079.2	MA0079.2	0.0362
MA0080.2	MA0080.2	3.53657e-8
MA0081.1	MA0081.1	0.0207
MA0083.1	MA0083.1	0.132
MA0084.1	MA0084.1	0.0999
MA0087.1	MA0087.1	0.737
MA0088.1	MA0088.1	0.21
MA0090.1	MA0090.1	0.00527
MA0091.1	MA0091.1	0.0063
MA0092.1	MA0092.1	0.305
MA0093.1	MA0093.1	0.24
MA0099.2	MA0099.2	0.316
MA0100.1	MA0100.1	0.125
MA0101.1	MA0101.1	3.2387e-5
MA0102.2	MA0102.2	1.24785e-5
MA0103.1	MA0103.1	0.0263
MA0104.2	MA0104.2	0.488
MA0105.1	MA0105.1	0.111
MA0106.1	MA0106.1	0.105
MA0107.1	MA0107.1	1.98737e-5
MA0108.2	MA0108.2	0.368
MA0111.1	MA0111.1	0.612
MA0112.2	MA0112.2	0.00364
MA0113.1	MA0113.1	0.312
MA0114.1	MA0114.1	0.597
MA0115.1	MA0115.1	0.416
MA0116.1	MA0116.1	0.0236
MA0117.1	MA0117.1	0.522
MA0119.1	MA0119.1	5.98872e-4
MA0122.1	MA0122.1	0.789
MA0124.1	MA0124.1	0.175
MA0125.1	MA0125.1	0.407
MA0131.1	MA0131.1	0.345
MA0135.1	MA0135.1	0.787
MA0136.1	MA0136.1	1.21472e-9
MA0137.2	MA0137.2	2.18131e-4
MA0138.2	MA0138.2	0.98
MA0139.1	MA0139.1	0.656
MA0140.1	MA0140.1	0.785
MA0141.1	MA0141.1	0.726
MA0142.1	MA0142.1	0.109
MA0143.1	MA0143.1	0.967
MA0144.1	MA0144.1	0.148
MA0145.1	MA0145.1	0.213
MA0146.1	MA0146.1	0.557
MA0147.1	MA0147.1	0.82
MA0148.1	MA0148.1	0.0328
MA0149.1	MA0149.1	0.139
MA0150.1	MA0150.1	0.317
MA0152.1	MA0152.1	0.443
MA0153.1	MA0153.1	0.121
MA0154.1	MA0154.1	0.122
MA0155.1	MA0155.1	0.82
MA0156.1	MA0156.1	1.96132e-7
MA0157.1	MA0157.1	0.214
MA0159.1	MA0159.1	0.675
MA0160.1	MA0160.1	0.127
MA0162.1	MA0162.1	0.00428
MA0163.1	MA0163.1	0.00141
MA0164.1	MA0164.1	0.826
MA0258.1	MA0258.1	0.142
MA0259.1	MA0259.1	0.634

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11718

Novel motif	Logo	P-value
1	1	0.0719
10	10	0.0667
100	100	0.306
101	101	0.664
102	102	0.707
103	103	0.367
104	104	0.86
105	105	0.0466
106	106	0.485
107	107	0.0318
108	108	0.451
109	109	0.00966
11	11	0.353
110	110	0.0454
111	111	0.0528
112	112	0.663
113	113	0.0074
114	114	0.0929
115	115	0.0351
116	116	0.151
117	117	0.114
118	118	0.268
119	119	0.392
12	12	0.353
120	120	0.0611
121	121	0.564
122	122	0.0509
123	123	0.166
124	124	0.722
125	125	0.0423
126	126	0.729
127	127	0.67
128	128	0.754
129	129	0.46
13	13	0.142
130	130	0.946
131	131	0.629
132	132	0.382
133	133	0.368
134	134	0.787
135	135	0.8
136	136	0.265
137	137	0.362
138	138	0.447
139	139	0.895
14	14	0.713
140	140	0.352
141	141	0.81
142	142	0.506
143	143	0.275
144	144	0.83
145	145	0.218
146	146	0.766
147	147	0.417
148	148	0.291
149	149	0.0115
15	15	0.335
150	150	0.397
151	151	0.817
152	152	0.81
153	153	0.879
154	154	0.878
155	155	0.354
156	156	0.515
157	157	0.361
158	158	0.327
159	159	0.543
16	16	0.0426
160	160	0.167
161	161	0.891
162	162	0.335
163	163	0.129
164	164	0.627
165	165	0.142
166	166	0.646
167	167	0.302
168	168	0.343
169	169	0.0332
17	17	0.157
18	18	0.408
19	19	0.0143
2	2	0.923
20	20	0.976
21	21	0.145
22	22	0.445
23	23	0.807
24	24	0.999
25	25	0.478
26	26	0.011
27	27	0.837
28	28	0.749
29	29	0.355
3	3	0.284
30	30	0.318
31	31	0.932
32	32	7.22934e-4
33	33	0.109
34	34	0.127
35	35	0.945
36	36	0.463
37	37	0.103
38	38	0.924
39	39	0.238
4	4	0.637
40	40	0.0673
41	41	0.562
42	42	0.929
43	43	0.127
44	44	0.0759
45	45	0.617
46	46	0.021
47	47	0.315
48	48	0.428
49	49	0.308
5	5	0.612
50	50	0.692
51	51	0.842
52	52	0.947
53	53	0.421
54	54	0.991
55	55	0.439
56	56	0.647
57	57	0.157
58	58	0.527
59	59	0.0128
6	6	0.284
60	60	0.852
61	61	0.787
62	62	0.798
63	63	0.441
64	64	0.922
65	65	0.916
66	66	0.0345
67	67	0.831
68	68	0.395
69	69	0.148
7	7	0.734
70	70	0.331
71	71	0.0352
72	72	0.22
73	73	0.109
74	74	0.65
75	75	0.264
76	76	0.918
77	77	0.0554
78	78	0.145
79	79	0.0454
8	8	0.0695
80	80	0.572
81	81	0.619
82	82	0.657
83	83	0.817
84	84	0.124
85	85	0.602
86	86	0.706
87	87	0.911
88	88	0.68
89	89	0.23
9	9	0.91
90	90	0.217
91	91	0.667
92	92	0.759
93	93	0.826
94	94	0.422
95	95	0.122
96	96	0.361
97	97	0.811
98	98	0.579
99	99	0.00336

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11718

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0000134 mesenchymal cell
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005180
+|accession_numbers=CAGE;DRX007935;DRR008807;DRZ000232;DRZ001617;DRZ011582;DRZ012967
 |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:81110684..81110700,+!p1@MYF5!3.10!1261.69!MYF5;;chr1:40105299..40105326,-!p1@HEYL!1.84!68.80!HEYL;;chr11:17741111..17741124,+!p1@MYOD1!1.63!41.60!MYOD1;;chr14:61116183..61116208,-!p1@SIX1!1.61!144.41!SIX1;;chr2:5832508..5832524,+!p1@SOX11!1.53!33.20!SOX11;;chr16:54320617..54320643,-!p3@IRX3!1.51!40.00!IRX3;;chr11:17741254..17741282,+!p2@MYOD1!1.51!31.60!MYOD1;;chr21:36421535..36421610,-!p2@RUNX1!1.41!86.41!RUNX1;;chr17:46675558..46675577,-!p2@HOXB6!1.39!23.60!HOXB6;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.38!23.20!ZBED1;;chr2:85981107..85981120,+!p3@ATOH8!1.35!21.20!ATOH8;;chr16:54320646..54320672,-!p2@IRX3!1.34!31.60!IRX3;;chr15:57511609..57511651,+!p2@TCF12!1.33!34.00!TCF12;;chr7:19157248..19157268,-!p1@TWIST1!1.32!54.40!TWIST1;;chr17:46622205..46622218,-!p3@HOXB2!1.30!22.00!HOXB2;;chr19:38720294..38720348,-!p1@DPF1!1.28!22.40!DPF1;;chr2:239148671..239148686,-!p1@HES6!1.27!63.20!HES6;;chr4:111558135..111558198,-!p2@PITX2!1.26!17.20!PITX2;;chr2:45236540..45236577,-!p1@SIX2!1.25!16.80!SIX2;;chr17:46622229..46622257,-!p6@HOXB2!1.24!19.20!HOXB2;;chr17:46675420..46675465,-!p3@HOXB6!1.23!18.40!HOXB6;;chr10:131762504..131762555,-!p1@EBF3!1.23!16.00!EBF3;;chr2:85981073..85981091,+!p5@ATOH8!1.22!15.60!ATOH8;;chr16:86600426..86600441,+!p1@FOXC2!1.21!37.60!FOXC2;;chr16:54320675..54320715,-!p1@IRX3!1.21!32.40!IRX3;;chr2:85980951..85981004,+!p1@ATOH8!1.21!24.80!ATOH8;;chr5:72744594..72744609,-!p1@FOXD1!1.15!59.20!FOXD1;;chr2:85981027..85981047,+!p8@ATOH8!1.13!12.40!ATOH8;;chr11:125034640..125034655,+!p1@PKNOX2!1.11!12.00!PKNOX2;;chr15:42749722..42749739,-!p2@ZFP106!1.10!20.80!ZFP106;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.09!11.20!HOXC5;;chr3:52001448..52001478,-!p2@PCBP4!1.08!155.21!PCBP4;;chr16:31076273..31076288,-!p11@ZNF668!1.07!10.80!ZNF668;;chr8:49833978..49833996,-!p1@SNAI2!1.06!219.22!SNAI2;;chr17:46622440..46622477,-!p5@HOXB2!1.05!11.60!HOXB2;;chr12:81101472..81101483,+!p2@MYF6!1.03!9.60!MYF6;;chr15:83953397..83953425,-!p1@BNC1!1.02!10.80!BNC1;;chr12:125002827..125002855,-!p5@NCOR2!1.01!13.20!NCOR2;;chr2:85981008..85981025,+!p7@ATOH8!1.01!9.20!ATOH8;;chr6:31126291..31126399,+!p1@TCF19!1.00!88.01!TCF19;;chr11:46299199..46299233,+!p1@CREB3L1!1.00!48.00!CREB3L1;;chr8:67525443..67525459,-!p2@MYBL1!1.00!13.60!MYBL1;;chr5:176738887..176738934,-!p1@MXD3!0.98!58.80!MXD3;;chr2:85980919..85980942,+!p4@ATOH8!0.98!9.20!ATOH8;;chr20:30193083..30193098,+!p1@ID1!0.97!684.85!ID1;;chr3:52001426..52001447,-!p3@PCBP4!0.97!24.00!PCBP4;;chr17:48072574..48072597,-!p1@DLX3!0.97!8.40!DLX3;;chr21:38071430..38071456,+!p1@SIM2!0.97!8.40!SIM2;;chr8:49833948..49833973,-!p2@SNAI2!0.96!53.60!SNAI2;;chr17:46621101..46621143,-!p7@HOXB2!0.96!11.20!HOXB2;;chr5:88178983..88179012,-!p1@MEF2C!0.95!62.80!MEF2C;;chr14:61116168..61116180,-!p2@SIX1!0.95!9.20!SIX1;;chr11:17741084..17741094,+!p3@MYOD1!0.95!8.00!MYOD1;;chr11:17741206..17741215,+!p6@MYOD1!0.93!7.60!MYOD1;;chr17:46622175..46622186,-!p12@HOXB2!0.93!7.60!HOXB2;;chr17:46671108..46671147,-!p1@HOXB5!0.93!7.60!HOXB5;;chr17:46622070..46622109,-!p1@HOXB2!0.92!16.80!HOXB2;;chr12:81101404..81101421,+!p1@MYF6!0.91!7.20!MYF6;;chr3:114343768..114343822,-!p1@ZBTB20!0.90!32.00!ZBTB20;;chr7:44924939..44924993,-!p2@PURB!0.90!14.00!PURB;;chr4:81104985..81105005,+!p4@PRDM8!0.88!8.00!PRDM8;;chr1:23885981..23886002,-!p1@ID3!0.87!1180.08!ID3;;chr1:8934931..8934947,-!p4@ENO1!0.87!22.40!ENO1;;chr19:23299814..23299844,+!p1@ZNF730!0.87!8.00!ZNF730;;chr16:31076332..31076388,-!p3@ZNF668!0.87!6.40!ZNF668;;chr1:119530493..119530572,-!p1@TBX15!0.87!6.40!TBX15;;chr21:38071403..38071428,+!p2@SIM2!0.87!6.40!SIM2;;chr3:141087393..141087426,+!p3@ZBTB38!0.86!26.40!ZBTB38;;chr16:54320101..54320125,-!p4@IRX3!0.86!9.20!IRX3;;chr2:85981222..85981259,+!p2@ATOH8!0.85!10.40!ATOH8;;chr4:81105027..81105039,+!p3@PRDM8!0.85!7.20!PRDM8;;chr2:85980768..85980783,+!p10@ATOH8!0.85!6.00!ATOH8;;chr17:46675586..46675600,-!p6@HOXB6!0.85!6.00!HOXB6;;chr7:27205136..27205164,-!p1@HOXA9!0.85!6.00!HOXA9;;chr20:32274150..32274166,-!p2@E2F1!0.84!11.60!E2F1;;chr17:46688334..46688385,-!p1@HOXB7!0.84!8.80!HOXB7;;chr2:238536207..238536290,+!p2@LRRFIP1!0.83!59.60!LRRFIP1;;chr1:151032860..151032918,+!p1@MLLT11!0.82!71.60!MLLT11;;chr1:151032922..151032951,+!p2@MLLT11!0.82!9.60!MLLT11;;chr16:54320158..54320200,-!p5@IRX3!0.82!8.40!IRX3;;chr17:46675619..46675642,-!p5@HOXB6!0.82!5.60!HOXB6;;chr17:46690839..46690884,-!p1@HOXB8!0.82!5.60!HOXB8;;chr11:125034605..125034636,+!p2@PKNOX2!0.82!5.60!PKNOX2;;chr12:54447637..54447659,+!p4@HOXC4!0.82!5.60!HOXC4;;chr12:77459306..77459365,-!p1@E2F7!0.80!71.60!E2F7;;chr8:67525473..67525518,-!p1@MYBL1!0.80!12.80!MYBL1;;chr17:46687959..46688007,-!p2@HOXB7!0.80!7.60!HOXB7;;chr2:176994408..176994492,+!p1@HOXD8!0.79!5.20!HOXD8;;chr2:45236579..45236596,-!p2@SIX2!0.79!5.20!SIX2;;chr6:45390025..45390076,+!p2@RUNX2!0.78!12.80!RUNX2;;chr20:32274179..32274213,-!p1@E2F1!0.77!35.20!E2F1;;chr14:73360799..73360817,-!p1@DPF3!0.77!18.40!DPF3;;chr7:150945754..150945789,-!p2@SMARCD3!0.77!16.40!SMARCD3;;chr14:62203595..62203676,+!p4@HIF1A!0.77!9.60!HIF1A;;chr14:62203749..62203798,+!p5@HIF1A!0.76!7.60!HIF1A;;chr11:12696071..12696086,+!p3@TEAD1!0.76!6.40!TEAD1;;chr3:147127142..147127168,+!p1@ZIC1!0.76!4.80!ZIC1;;chr4:111544219..111544240,-!p1@PITX2!0.76!4.80!PITX2;;chr16:54320322..54320343,-!p7@IRX3!0.76!4.80!IRX3;;chr16:86601052..86601066,+!p4@FOXC2!0.76!4.80!FOXC2;;chr17:46675344..46675355,-!p9@HOXB6!0.76!4.80!HOXB6;;chr8:77593474..77593612,+!p1@ZFHX4!0.75!21.20!ZFHX4;;chr11:65667884..65667895,-!p2@FOSL1!0.75!19.60!FOSL1;;chr2:19558373..19558392,-!p1@OSR1!0.75!13.60!OSR1;;chr5:72744445..72744466,-!p2@FOXD1!0.75!8.00!FOXD1;;chr1:8926369..8926385,-!p12@ENO1!0.75!6.40!ENO1;;chr7:150946015..150946070,-!p3@SMARCD3!0.74!10.40!SMARCD3;;chr2:85980903..85980914,+!p11@ATOH8!0.73!4.40!ATOH8;;chr11:17741228..17741243,+!p4@MYOD1!0.73!4.40!MYOD1;;chr16:86612320..86612394,+!p1@FOXL1!0.73!4.40!FOXL1;;chr17:46621146..46621180,-!p10@HOXB2!0.73!4.40!HOXB2;;chr17:46675469..46675481,-!p4@HOXB6!0.73!4.40!HOXB6;;chr18:3449821..3449860,+!p7@TGIF1!0.71!8.00!TGIF1;;chr3:178789522..178789564,-!p2@ZMAT3!0.70!33.20!ZMAT3;;chr5:321810..321877,+!p1@AHRR!0.70!14.00!AHRR;;chr17:46621937..46621966,-!p2@HOXB2!0.70!12.00!HOXB2;;chr17:46622114..46622138,-!p4@HOXB2!0.70!6.40!HOXB2;;chr5:72743793..72743855,-!p4@FOXD1!0.70!4.80!FOXD1;;chr5:88081308..88081333,-!p8@MEF2C!0.70!4.00!MEF2C;;chr7:150945865..150945896,-!p4@SMARCD3!0.70!4.00!SMARCD3;;chr7:27205106..27205134,-!p2@HOXA9!0.70!4.00!HOXA9;;chr2:85980868..85980880,+!p12@ATOH8!0.70!4.00!ATOH8;;chr16:86600458..86600461,+!p3@FOXC2!0.70!4.00!FOXC2;;chr17:46691732..46691766,-!p4@HOXB8!0.70!4.00!HOXB8;;chr4:26322267..26322334,+!p3@RBPJ!0.69!10.40!RBPJ;;chr11:65686802..65686818,+!p6@DRAP1!0.69!7.20!DRAP1;;chr19:16435625..16435682,+!p1@KLF2!0.68!140.81!KLF2;;chr4:81104895..81104920,+!p2@PRDM8!0.68!6.00!PRDM8;;chr12:54447599..54447630,+!p3@HOXC4!0.68!4.80!HOXC4;;chr17:41277372..41277418,-!p1@BRCA1!0.67!15.20!BRCA1;;chr11:65687362..65687436,+!p3@DRAP1!0.66!18.80!DRAP1;;chrX:70504244..70504278,+!p4@NONO!0.66!6.00!NONO;;chr12:125002861..125002894,-!p7@NCOR2!0.66!5.60!NCOR2;;chr14:62213758..62213774,+!p8@HIF1A!0.66!4.80!HIF1A;;chr6:45390077..45390105,+!p9@RUNX2!0.66!4.80!RUNX2;;chr7:27196267..27196311,-!p1@HOXA7!0.66!3.60!HOXA7;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.66!3.60!HOXC5;;chr9:126774018..126774055,+!p1@LHX2!0.66!3.60!LHX2;;chr16:54320302..54320317,-!p10@IRX3!0.66!3.60!IRX3;;chr16:86601088..86601105,+!p5@FOXC2!0.66!3.60!FOXC2;;chr20:42295713..42295738,+!p2@MYBL2!0.65!24.00!MYBL2;;chr14:62162285..62162296,+!p3@HIF1A!0.65!20.80!HIF1A;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.65!18.00!TAL1;;chrX:106960221..106960236,-!p3@TSC22D3!0.65!10.80!TSC22D3;;chr3:114343826..114343869,-!p4@ZBTB20!0.65!7.60!ZBTB20;;chr14:62162258..62162269,+!p2@HIF1A!0.64!38.40!HIF1A;;chr11:65686952..65686975,+!p5@DRAP1!0.63!21.20!DRAP1;;chr11:46299539..46299620,+!p2@CREB3L1!0.63!6.00!CREB3L1;;chr4:81104958..81104981,+!p5@PRDM8!0.63!4.00!PRDM8;;chr19:12203100..12203132,+!p1@ZNF788!0.62!7.20!ZNF788;;chr14:62213827..62213853,+!p6@HIF1A!0.62!4.80!HIF1A;;chr3:37216069..37216075,-!p4@LRRFIP2!0.62!4.40!LRRFIP2;;chr6:85473156..85473210,-!p2@TBX18!0.62!4.00!TBX18;;chr6:108977520..108977534,+!p7@FOXO3!0.62!3.20!FOXO3;;chr2:237077022..237077038,-!p1@GBX2!0.62!3.20!GBX2;;chr2:45236829..45236840,-!p3@SIX2!0.62!3.20!SIX2;;chr2:5832493..5832507,+!p2@SOX11!0.62!3.20!SOX11;;chr16:54320127..54320148,-!p6@IRX3!0.62!3.20!IRX3;;chr16:54320280..54320291,-!p9@IRX3!0.62!3.20!IRX3;;chr11:125034586..125034604,+!p3@PKNOX2!0.62!3.20!PKNOX2;;chr11:46316699..46316719,+!p10@CREB3L1!0.62!3.20!CREB3L1;;chr19:47523058..47523114,+!p1@NPAS1!0.62!3.20!NPAS1;;chr21:36421147..36421193,-!p10@RUNX1!0.62!3.20!RUNX1;;chr12:2986275..2986363,-!p1@FOXM1!0.61!36.80!FOXM1;;chr19:23433144..23433204,-!p1@ZNF724P!0.61!16.40!ZNF724P;;chr11:65667846..65667868,-!p1@FOSL1!0.60!96.01!FOSL1;;chr19:49864746..49864780,-!p2@TEAD2!0.60!4.40!TEAD2;;chr10:31288398..31288455,-!p2@ZNF438!0.60!3.60!ZNF438;;chr12:66218598..66218645,+!p2@HMGA2!0.59!16.00!HMGA2;;chr9:99180617..99180658,-!p1@ZNF367!0.59!7.20!ZNF367;;chr8:103665947..103665981,-!p3@KLF10!0.59!4.40!KLF10;;chr6:28321971..28321995,-!p1@ZNF323!0.58!2.80!ZNF323;;chr7:27213893..27213954,-!p1@HOXA10!0.58!2.80!HOXA10;;chr19:2867325..2867348,+!p1@ZNF556!0.58!2.80!ZNF556;;chr3:147111231..147111281,+!p3@ZIC1!0.58!2.80!ZIC1;;chr11:32457075..32457095,-!p1@WT1!0.58!2.80!WT1;;chr12:54393880..54393962,+!p1@HOXC9!0.58!2.80!HOXC9;;chr12:54394309..54394336,+!p2@HOXC9!0.58!2.80!HOXC9;;chr21:36421347..36421380,-!p8@RUNX1!0.58!2.80!RUNX1;;chr21:36421401..36421414,-!p16@RUNX1!0.58!2.80!RUNX1;;chr21:36421518..36421532,-!p11@RUNX1!0.58!2.80!RUNX1;;chr14:55493763..55493824,-!p1@WDHD1!0.57!25.20!WDHD1;;chr12:3068544..3068597,+!p1@TEAD4!0.57!20.00!TEAD4;;chr1:247171316..247171336,-!p3@ZNF695!0.57!4.40!ZNF695;;chr9:99180597..99180614,-!p3@ZNF367!0.57!3.20!ZNF367;;chr13:73633131..73633149,+!p1@KLF5!0.56!35.20!KLF5;;chr5:929189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@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesenchymal%2520stem%2520cell%2520line%253aHu5%252fE18.CNhs11718.10568-108B1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesenchymal%2520stem%2520cell%2520line%253aHu5%252fE18.CNhs11718.10568-108B1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesenchymal%2520stem%2520cell%2520line%253aHu5%252fE18.CNhs11718.10568-108B1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesenchymal%2520stem%2520cell%2520line%253aHu5%252fE18.CNhs11718.10568-108B1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10568-108B1
 |is_a=CL:0000134;;EFO:0002091;;FF:0000003;;FF:0000210
 |is_obsolete=
+|library_id=CNhs11718
+|library_id_phase_based=2:CNhs11718
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10568
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10568
 |name=mesenchymal stem cell line:Hu5/E18
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11718,LSID819,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
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@@ Line 63: / Line 78: @@
 |rna_weight_ug=12.9305
 |sample_age=42
+|sample_category=cell lines
 |sample_cell_catalog=RCB2366
 |sample_cell_line=Hu5/E18
@@ Line 84: / Line 100: @@
 |top_motifs=POU3F1..4:2.93430932523;NKX2-2,8:2.77606262968;AIRE:1.9667992169;UFEwm:1.87935231728;ALX4:1.86161740761;EVI1:1.64707199637;NR3C1:1.51360022332;FOXL1:1.50204136142;FOXD3:1.3639373055;E2F1..5:1.35598756126;RXR{A,B,G}:1.35430374314;T:1.3455089674;GCM1,2:1.3136147292;HSF1,2:1.30359662458;HMGA1,2:1.26307137487;NKX3-1:1.25935636358;FOXM1:1.14624683569;MYB:1.13069478032;ZNF384:1.12577188152;IKZF2:1.11371730798;GZF1:1.08505931199;TEAD1:1.0375812066;TFDP1:0.99283353204;RXRA_VDR{dimer}:0.992607731585;TFAP4:0.978128906066;HES1:0.969380598547;PAX4:0.948165678197;ZIC1..3:0.935893468507;SRF:0.897336413578;PPARG:0.878495944781;POU1F1:0.834165339662;HOX{A4,D4}:0.787454192117;TLX1..3_NFIC{dimer}:0.761193861105;MYOD1:0.714751486574;GFI1:0.690555029209;YY1:0.682550368772;NFY{A,B,C}:0.665182654505;ARID5B:0.663293898922;PAX8:0.66105589257;GFI1B:0.658709712041;NFE2L1:0.633215287884;CDC5L:0.588376285196;NR5A1,2:0.579788998679;PAX6:0.557535318737;MYBL2:0.54298047571;HAND1,2:0.53778367894;SMAD1..7,9:0.488553936655;TP53:0.486075939662;EN1,2:0.473447587809;ZBTB16:0.466900791571;PITX1..3:0.464504238503;AR:0.459417726207;KLF4:0.455574040213;GATA4:0.45150691643;IKZF1:0.450595183076;PAX1,9:0.425973726895;MTE{core}:0.4113916654;MEF2{A,B,C,D}:0.408348292266;PAX3,7:0.40208557553;LHX3,4:0.372189814649;ZNF143:0.36741559147;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.366476656843;NFIX:0.316958258729;LEF1_TCF7_TCF7L1,2:0.309526655775;TOPORS:0.288920295229;GTF2A1,2:0.275171540504;NHLH1,2:0.260755003513;BACH2:0.248962695481;NKX3-2:0.229734615543;TAL1_TCF{3,4,12}:0.223629269294;NR6A1:0.216212810367;HOXA9_MEIS1:0.211744208022;TGIF1:0.176749275852;TBX4,5:0.169148846189;SPZ1:0.149291671197;ESR1:0.140345583605;NR1H4:0.134424807452;MAZ:0.123290413434;FOXA2:0.122415983096;ZNF148:0.114714642342;ZNF238:0.114081385083;TBP:0.11169641059;GLI1..3:0.106506164483;DBP:0.0972369575598;FOXO1,3,4:0.0854451559671;CDX1,2,4:0.0714805794241;EBF1:0.0425052041099;ZBTB6:0.0412114519196;EP300:0.0336661438559;HOX{A5,B5}:0.0273163681739;NANOG{mouse}:0.0255064652086;TFCP2:0.00893494963255;LMO2:0.00846268258905;RUNX1..3:-0.0131138094253;DMAP1_NCOR{1,2}_SMARC:-0.0350592631355;SOX2:-0.0539835495998;NRF1:-0.0557687286615;FOS_FOS{B,L1}_JUN{B,D}:-0.076714156933;HIC1:-0.0858014703068;SOX{8,9,10}:-0.116084455881;NFE2L2:-0.125731134886;POU6F1:-0.127267802718;BPTF:-0.143523784301;FOXP3:-0.148410059921;SOX5:-0.153021287447;ONECUT1,2:-0.169902698907;NFE2:-0.177031260354;STAT5{A,B}:-0.177859823989;ELK1,4_GABP{A,B1}:-0.188517180099;HMX1:-0.190193008456;PRRX1,2:-0.206836652029;NFIL3:-0.212641692588;OCT4_SOX2{dimer}:-0.213001033892;SOX17:-0.223012613404;MTF1:-0.223244793782;ZFP161:-0.229291801668;ALX1:-0.245453338856;MZF1:-0.247881881482;POU2F1..3:-0.253887888394;PDX1:-0.271111531714;RFX1:-0.272783043778;HNF4A_NR2F1,2:-0.282213581715;FOXP1:-0.282302730136;HNF1A:-0.289978873965;GTF2I:-0.317624870597;FOSL2:-0.321273701017;TFAP2{A,C}:-0.321369850505;CUX2:-0.3255797565;NFATC1..3:-0.342372652091;CREB1:-0.370508583621;IRF1,2:-0.371635887882;NKX2-1,4:-0.381503138684;STAT2,4,6:-0.393754471587;ESRRA:-0.408263666446;ATF6:-0.408905265953;HLF:-0.418679583746;TLX2:-0.425198885843;ADNP_IRX_SIX_ZHX:-0.440721518919;PBX1:-0.463160060733;IRF7:-0.468108108306;NKX6-1,2:-0.479589180465;MED-1{core}:-0.485026148046;RBPJ:-0.516104685558;NKX2-3_NKX2-5:-0.529195471797;TFAP2B:-0.529765285952;JUN:-0.54186015866;FOX{D1,D2}:-0.543948687536;ATF5_CREB3:-0.548595346659;RREB1:-0.570415818455;SPIB:-0.577162885074;XCPE1{core}:-0.582336541809;NFKB1_REL_RELA:-0.583335999997;RFX2..5_RFXANK_RFXAP:-0.590122889189;SPI1:-0.599208575051;AHR_ARNT_ARNT2:-0.611535360237;SNAI1..3:-0.614257495431;TEF:-0.654228961989;PAX5:-0.672844405863;MYFfamily:-0.675419014245;ELF1,2,4:-0.67804375724;FOXQ1:-0.680673440357;PRDM1:-0.70189177585;HOX{A6,A7,B6,B7}:-0.720221000729;HIF1A:-0.720442669854;REST:-0.735342322799;FOXN1:-0.736111998717;bHLH_family:-0.740773601234;GATA6:-0.760946243196;ETS1,2:-0.785804410902;FOX{I1,J2}:-0.798557215169;BREu{core}:-0.801945065868;SP1:-0.811394919032;RORA:-0.822885959419;CEBPA,B_DDIT3:-0.838756235061;SREBF1,2:-0.841385046655;ATF4:-0.858286190443;XBP1:-0.861479908903;PATZ1:-0.876736339222;ZEB1:-0.960750920188;HBP1_HMGB_SSRP1_UBTF:-0.985504752625;POU5F1:-1.0096529039;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.03803181779;VSX1,2:-1.07736986397;EGR1..3:-1.08104646118;ATF2:-1.18089888002;ZNF423:-1.18172933215;NANOG:-1.32913164119;STAT1,3:-1.36872504407;MAFB:-1.39634511205;PAX2:-1.42673022857;FOX{F1,F2,J1}:-1.68125969782;CRX:-1.73289097516
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10568-108B1;search_select_hide=table117:FF:10568-108B1
 }}

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FF:10568-108B1: Difference between revisions

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Latest revision as of 14:29, 3 June 2020

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