FF:10277-104E7: Difference between revisions

Latest revision as of 13:57, 3 June 2020

Name:	optic nerve, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13449
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	optic nerve
dev stage	NA
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Alessandro Bonetti
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1-On
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005088

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13449		CAGE		DRX008696		DRR009568

Accession ID Hg19

Library id		BAM		CTSS
CNhs13449		DRZ000993		DRZ002378

Accession ID Hg38

Library id		BAM		CTSS
CNhs13449		DRZ012343		DRZ013728

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.63
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.402
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.385
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.195
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.636
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.574
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.542
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.805
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0269
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.586
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0963
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.587
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.385
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	1.291
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.827
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13449

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.124
MA0003.1	MA0003.1	0.253
MA0004.1	MA0004.1	0.159
MA0006.1	MA0006.1	0.607
MA0007.1	MA0007.1	0.636
MA0009.1	MA0009.1	0.213
MA0014.1	MA0014.1	0.382
MA0017.1	MA0017.1	0.0115
MA0018.2	MA0018.2	0.146
MA0019.1	MA0019.1	0.918
MA0024.1	MA0024.1	0.784
MA0025.1	MA0025.1	0.654
MA0027.1	MA0027.1	0.691
MA0028.1	MA0028.1	0.00282
MA0029.1	MA0029.1	0.297
MA0030.1	MA0030.1	0.0961
MA0031.1	MA0031.1	0.0926
MA0035.2	MA0035.2	0.193
MA0038.1	MA0038.1	0.769
MA0039.2	MA0039.2	0.0351
MA0040.1	MA0040.1	0.96
MA0041.1	MA0041.1	0.703
MA0042.1	MA0042.1	0.905
MA0043.1	MA0043.1	0.806
MA0046.1	MA0046.1	0.0953
MA0047.2	MA0047.2	0.628
MA0048.1	MA0048.1	0.0576
MA0050.1	MA0050.1	0.00298
MA0051.1	MA0051.1	0.0876
MA0052.1	MA0052.1	0.202
MA0055.1	MA0055.1	0.0019
MA0057.1	MA0057.1	0.641
MA0058.1	MA0058.1	0.229
MA0059.1	MA0059.1	0.0507
MA0060.1	MA0060.1	0.321
MA0061.1	MA0061.1	6.3616e-4
MA0062.2	MA0062.2	1.83862e-6
MA0065.2	MA0065.2	0.0306
MA0066.1	MA0066.1	0.0135
MA0067.1	MA0067.1	0.712
MA0068.1	MA0068.1	0.359
MA0069.1	MA0069.1	0.864
MA0070.1	MA0070.1	0.95
MA0071.1	MA0071.1	0.0747
MA0072.1	MA0072.1	0.82
MA0073.1	MA0073.1	0.318
MA0074.1	MA0074.1	0.395
MA0076.1	MA0076.1	0.00168
MA0077.1	MA0077.1	4.65675e-4
MA0078.1	MA0078.1	0.06
MA0079.2	MA0079.2	0.665
MA0080.2	MA0080.2	8.91792e-7
MA0081.1	MA0081.1	0.00652
MA0083.1	MA0083.1	0.0781
MA0084.1	MA0084.1	0.044
MA0087.1	MA0087.1	0.0997
MA0088.1	MA0088.1	0.25
MA0090.1	MA0090.1	0.392
MA0091.1	MA0091.1	0.535
MA0092.1	MA0092.1	0.748
MA0093.1	MA0093.1	0.17
MA0099.2	MA0099.2	8.81409e-16
MA0100.1	MA0100.1	0.277
MA0101.1	MA0101.1	8.24592e-5
MA0102.2	MA0102.2	0.18
MA0103.1	MA0103.1	0.0426
MA0104.2	MA0104.2	0.232
MA0105.1	MA0105.1	1.0735e-4
MA0106.1	MA0106.1	0.125
MA0107.1	MA0107.1	6.84232e-5
MA0108.2	MA0108.2	0.206
MA0111.1	MA0111.1	0.838
MA0112.2	MA0112.2	0.0033
MA0113.1	MA0113.1	0.656
MA0114.1	MA0114.1	0.0462
MA0115.1	MA0115.1	0.973
MA0116.1	MA0116.1	3.57985e-4
MA0117.1	MA0117.1	0.524
MA0119.1	MA0119.1	0.447
MA0122.1	MA0122.1	0.499
MA0124.1	MA0124.1	0.988
MA0125.1	MA0125.1	0.234
MA0131.1	MA0131.1	0.896
MA0135.1	MA0135.1	0.432
MA0136.1	MA0136.1	2.27782e-12
MA0137.2	MA0137.2	0.625
MA0138.2	MA0138.2	0.411
MA0139.1	MA0139.1	0.399
MA0140.1	MA0140.1	0.463
MA0141.1	MA0141.1	0.00489
MA0142.1	MA0142.1	0.893
MA0143.1	MA0143.1	0.0915
MA0144.1	MA0144.1	0.844
MA0145.1	MA0145.1	0.742
MA0146.1	MA0146.1	0.0504
MA0147.1	MA0147.1	0.13
MA0148.1	MA0148.1	0.916
MA0149.1	MA0149.1	0.0424
MA0150.1	MA0150.1	2.29449e-4
MA0152.1	MA0152.1	0.77
MA0153.1	MA0153.1	0.671
MA0154.1	MA0154.1	0.04
MA0155.1	MA0155.1	0.554
MA0156.1	MA0156.1	4.12888e-9
MA0157.1	MA0157.1	0.273
MA0159.1	MA0159.1	0.0385
MA0160.1	MA0160.1	0.0935
MA0162.1	MA0162.1	0.314
MA0163.1	MA0163.1	1.44545e-6
MA0164.1	MA0164.1	0.59
MA0258.1	MA0258.1	0.111
MA0259.1	MA0259.1	0.716

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13449

Novel motif	Logo	P-value
1	1	0.308
10	10	0.134
100	100	0.788
101	101	0.634
102	102	0.651
103	103	0.0219
104	104	0.0227
105	105	0.0587
106	106	0.108
107	107	0.513
108	108	0.574
109	109	0.00263
11	11	0.0122
110	110	0.0553
111	111	0.695
112	112	0.44
113	113	0.0204
114	114	0.49
115	115	0.419
116	116	0.235
117	117	0.0146
118	118	0.369
119	119	0.845
12	12	0.374
120	120	0.0328
121	121	0.848
122	122	0.907
123	123	0.00103
124	124	0.536
125	125	0.913
126	126	0.145
127	127	0.195
128	128	0.698
129	129	0.942
13	13	0.00522
130	130	0.0568
131	131	0.0035
132	132	0.437
133	133	0.114
134	134	0.444
135	135	0.879
136	136	0.0031
137	137	0.294
138	138	0.463
139	139	0.73
14	14	0.93
140	140	0.179
141	141	0.881
142	142	0.497
143	143	0.0808
144	144	0.305
145	145	0.792
146	146	0.926
147	147	0.985
148	148	0.882
149	149	0.177
15	15	0.102
150	150	0.0808
151	151	0.942
152	152	0.0906
153	153	0.297
154	154	0.141
155	155	0.771
156	156	0.493
157	157	0.434
158	158	0.351
159	159	0.0765
16	16	0.0549
160	160	0.347
161	161	0.329
162	162	0.526
163	163	0.798
164	164	0.015
165	165	0.0999
166	166	0.821
167	167	0.229
168	168	0.67
169	169	0.109
17	17	0.178
18	18	0.113
19	19	0.445
2	2	0.737
20	20	0.185
21	21	0.161
22	22	0.237
23	23	0.793
24	24	0.0022
25	25	0.467
26	26	0.143
27	27	0.297
28	28	0.936
29	29	5.1869e-4
3	3	0.0842
30	30	0.597
31	31	0.766
32	32	0.0243
33	33	0.15
34	34	0.667
35	35	0.749
36	36	0.583
37	37	0.0315
38	38	0.615
39	39	0.465
4	4	0.635
40	40	0.196
41	41	0.605
42	42	0.421
43	43	0.287
44	44	0.00703
45	45	0.824
46	46	0.085
47	47	0.0787
48	48	0.055
49	49	0.49
5	5	0.455
50	50	0.629
51	51	0.607
52	52	0.976
53	53	0.14
54	54	0.908
55	55	0.831
56	56	0.936
57	57	0.815
58	58	0.286
59	59	0.0326
6	6	0.55
60	60	0.203
61	61	0.13
62	62	0.135
63	63	0.96
64	64	0.178
65	65	0.381
66	66	0.0837
67	67	0.676
68	68	0.206
69	69	0.435
7	7	0.135
70	70	0.713
71	71	0.00806
72	72	0.0678
73	73	0.0226
74	74	0.79
75	75	0.0104
76	76	0.685
77	77	0.1
78	78	0.0165
79	79	0.15
8	8	0.104
80	80	0.324
81	81	0.532
82	82	0.96
83	83	0.0247
84	84	0.49
85	85	0.351
86	86	0.21
87	87	0.00108
88	88	0.578
89	89	0.128
9	9	0.252
90	90	0.626
91	91	0.363
92	92	0.668
93	93	0.569
94	94	0.466
95	95	0.00285
96	96	0.274
97	97	0.88
98	98	0.426
99	99	0.761

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13449

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011166 human optic nerve sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000941 (cranial nerve II)
0003714 (neural tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0005162 (multi cell component structure)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0001785 (cranial nerve)
0002464 (nerve trunk)
0004904 (nerve connecting eye with brain)
0000122 (neuron projection bundle)
0001021 (nerve)
0004732 (segmental subdivision of nervous system)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0000010 (peripheral nervous system)
0001016 (nervous system)
0002104 (visual system)
0004456 (entire sense organ system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011166 (human optic nerve sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0003056 (pre-chordal neural plate)
UBERON:0005425 (presumptive neural retina)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0000941,UBERON:0004904,UBERON:0003714,UBERON:0000479,UBERON:0000064,UBERON:0000073,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005162,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0002464,UBERON:0000122,UBERON:0001021,UBERON:0004732,UBERON:0001032,UBERON:0006598,UBERON:0001785,UBERON:0002532,UBERON:0000010,UBERON:0001016,UBERON:0000924,UBERON:0002104,UBERON:0004456,UBERON:0006601
+|DRA_sample_Accession=CAGE@SAMD00005088
+|accession_numbers=CAGE;DRX008696;DRR009568;DRZ000993;DRZ002378;DRZ012343;DRZ013728
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000941,UBERON:0003714,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0005162,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0001785,UBERON:0002464,UBERON:0004904,UBERON:0000122,UBERON:0001021,UBERON:0004732,UBERON:0001032,UBERON:0010317,UBERON:0000010,UBERON:0001016,UBERON:0002104,UBERON:0004456
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0011166
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!3.21!1607.58!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!3.11!1273.50!OLIG1;;chr10:48355030..48355090,+!p1@ZNF488!2.52!418.31!ZNF488;;chr11:61520075..61520136,+!p1@C11orf9!2.45!579.64!C11orf9;;chr22:38380543..38380569,-!p1@SOX10!2.39!246.99!SOX10;;chr21:34442540..34442560,+!p2@OLIG1!2.31!202.73!OLIG1;;chr8:53322304..53322340,-!p1@ST18!2.24!171.32!ST18;;chr2:145277882..145277967,-!p3@ZEB2!2.21!271.26!ZEB2;;chr21:34398234..34398250,+!p1@OLIG2!2.15!141.34!OLIG2;;chr10:134599649..134599653,-!p1@NKX6-2!2.14!135.63!NKX6-2;;chr1:214161272..214161322,+!p1@PROX1!1.94!119.93!PROX1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.94!85.66!POU3F3;;chr8:53322347..53322378,-!p2@ST18!1.88!75.67!ST18;;chr19:46801639..46801699,+!p1@HIF3A!1.84!68.53!HIF3A;;chr16:1031762..1031781,+!p1@SOX8!1.83!67.10!SOX8;;chr19:30863271..30863338,+!p1@ZNF536!1.80!62.82!ZNF536;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.79!59.96!PEG3;;chr15:80696703..80696754,+!p1@ARNT2!1.73!69.96!ARNT2;;chr4:81118647..81118666,+!p1@PRDM8!1.70!64.25!PRDM8;;chr10:48359344..48359376,+!p2@ZNF488!1.68!47.11!ZNF488;;chr10:111987079..111987115,+!p3@MXI1!1.67!61.39!MXI1;;chr12:26277956..26277980,-!p1@BHLHE41!1.60!134.20!BHLHE41;;chr12:26277817..26277863,-!p2@BHLHE41!1.60!51.40!BHLHE41;;chr11:113930425..113930471,+!p1@ZBTB16!1.58!52.82!ZBTB16;;chr19:13135386..13135435,+!p4@NFIX!1.58!37.12!NFIX;;chr22:41763452..41763466,+!p2@TEF!1.56!35.69!TEF;;chr9:114287433..114287513,+!p1@ZNF483!1.55!87.09!ZNF483;;chr16:51185172..51185197,-!p1@SALL1!1.55!34.26!SALL1;;chr7:28725740..28725778,+!p1@CREB5!1.47!242.71!CREB5;;chr19:9879350..9879419,-!p2@ZNF846!1.45!57.11!ZNF846;;chr20:21494654..21494678,-!p2@NKX2-2!1.45!27.13!NKX2-2;;chr2:145275982..145276003,-!p7@ZEB2!1.45!27.13!ZEB2;;chr4:26344778..26344807,+!p8@RBPJ!1.45!27.13!RBPJ;;chr19:13135582..13135600,+!p3@NFIX!1.45!27.13!NFIX;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.43!25.70!POU3F3;;chr7:63505799..63505904,+!p1@ZNF727!1.43!25.70!ZNF727;;chr14:33408072..33408114,+!p2@NPAS3!1.42!29.98!NPAS3;;chr4:26344754..26344772,+!p10@RBPJ!1.40!24.27!RBPJ;;chr7:86781858..86781879,+!p3@DMTF1!1.37!35.69!DMTF1;;chr20:21494684..21494708,-!p1@NKX2-2!1.35!21.42!NKX2-2;;chr20:3388541..3388575,-!p2@C20orf194!1.34!79.95!C20orf194;;chr11:113930291..113930339,+!p2@ZBTB16!1.33!32.84!ZBTB16;;chr12:26277929..26277955,-!p3@BHLHE41!1.33!28.55!BHLHE41;;chr3:147111198..147111225,+!p4@ZIC1!1.32!19.99!ZIC1;;chr3:147127142..147127168,+!p1@ZIC1!1.32!19.99!ZIC1;;chrY:21906594..21906622,-!p1@KDM5D!1.32!19.99!KDM5D;;chr2:145277640..145277771,-!p1@ZEB2!1.31!254.13!ZEB2;;chr17:47439437..47439533,-!p1@ZNF652!1.31!152.76!ZNF652;;chr19:21512115..21512135,-!p3@ZNF708!1.29!37.12!ZNF708;;chr2:177053386..177053402,+!p1@HOXD1!1.29!18.56!HOXD1;;chr1:40105299..40105326,-!p1@HEYL!1.29!18.56!HEYL;;chr17:53342311..53342400,+!p1@HLF!1.27!19.99!HLF;;chr20:62680984..62680999,-!p1@SOX18!1.26!22.84!SOX18;;chr9:1050331..1050363,+!p1@DMRT2!1.26!17.13!DMRT2;;chr7:28448965..28448994,+!p2@CREB5!1.25!58.54!CREB5;;chrX:101186981..101187030,-!p1@ZMAT1!1.25!54.25!ZMAT1;;chr1:8877692..8877732,-!p1@RERE!1.23!125.64!RERE;;chr21:34442584..34442587,+!p3@OLIG1!1.22!15.70!OLIG1;;chr16:51185318..51185348,-!p2@SALL1!1.22!15.70!SALL1;;chr6:41701581..41701613,-!p2@TFEB!1.22!15.70!TFEB;;chr12:103351444..103351461,+!p1@ASCL1!1.22!15.70!ASCL1;;chr2:239148671..239148686,-!p1@HES6!1.20!54.25!HES6;;chr3:52001426..52001447,-!p3@PCBP4!1.20!41.40!PCBP4;;chr3:126076242..126076257,-!p1@KLF15!1.20!18.56!KLF15;;chrX:107019163..107019179,-!p7@TSC22D3!1.20!17.13!TSC22D3;;chr6:126070769..126070801,+!p1@HEY2!1.20!17.13!HEY2;;chr12:125003087..125003141,-!p4@NCOR2!1.19!18.56!NCOR2;;chr7:99613250..99613264,+!p2@ZKSCAN1!1.18!41.40!ZKSCAN1;;chr11:113930401..113930422,+!p3@ZBTB16!1.18!14.28!ZBTB16;;chr22:21771656..21771662,+!p1@HIC2!1.18!14.28!HIC2;;chr2:105470714..105470723,+!p@chr2:105470714..105470723,+!1.18!14.28!POU3F3;;chr3:52001396..52001425,-!p4@PCBP4!1.17!24.27!PCBP4;;chr6:126112074..126112144,+!p1@NCOA7!1.14!168.47!NCOA7;;chr2:214016314..214016343,-!p2@IKZF2!1.14!21.42!IKZF2;;chr11:66188503..66188511,+!p1@NPAS4!1.14!12.85!NPAS4;;chr3:52001448..52001478,-!p2@PCBP4!1.11!164.18!PCBP4;;chr7:86781916..86781963,+!p2@DMTF1!1.11!51.40!DMTF1;;chr10:64134120..64134183,+!p1@ZNF365!1.11!14.28!ZNF365;;chr14:73360799..73360817,-!p1@DPF3!1.10!39.98!DPF3;;chr18:56530692..56530723,+!p2@ZNF532!1.10!27.13!ZNF532;;chr1:61547894..61547968,+!p2@NFIA!1.09!32.84!NFIA;;chr1:214161358..214161377,+!p3@PROX1!1.09!11.42!PROX1;;chr21:39870339..39870443,-!p1@ERG!1.09!11.42!ERG;;chr18:76739816..76739822,+!p1@SALL3!1.09!11.42!SALL3;;chr6:41701557..41701578,-!p3@TFEB!1.09!11.42!TFEB;;chr2:16080659..16080685,+!p1@MYCN!1.09!11.42!MYCN;;chr3:147127177..147127194,+!p2@ZIC1!1.09!11.42!ZIC1;;chr19:53636125..53636178,-!p1@ZNF415!1.08!31.41!ZNF415;;chr3:169381420..169381535,-!p1@MECOM!1.08!12.85!MECOM;;chr19:21512144..21512191,-!p2@ZNF708!1.07!49.97!ZNF708;;c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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000966;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001781
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0003056,UBERON:0005425,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/optic%2520nerve%252c%2520donor1.CNhs13449.10277-104E7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/optic%2520nerve%252c%2520donor1.CNhs13449.10277-104E7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/optic%2520nerve%252c%2520donor1.CNhs13449.10277-104E7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/optic%2520nerve%252c%2520donor1.CNhs13449.10277-104E7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/optic%2520nerve%252c%2520donor1.CNhs13449.10277-104E7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10277-104E7
 |is_a=EFO:0002091;;FF:0011166
 |is_obsolete=
+|library_id=CNhs13449
+|library_id_phase_based=2:CNhs13449
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10277
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10277
 |name=optic nerve, donor1
 |namespace=
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13449,LSID1024,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=104
 |rna_catalog_number=
@@ Line 56: / Line 76: @@
 |rna_rin=5.1
 |rna_sample_type=total RNA
-|rna_tube_id=104E7
+|rna_tube_id=1.04E+09
 |rna_weight_ug=5.43132
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 80: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10277-104E7;search_select_hide=table117:FF:10277-104E7
 }}

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FF:10277-104E7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 13:57, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0