FF:10207-103F9: Difference between revisions

Latest revision as of 13:56, 3 June 2020

Name:	heart - tricuspid valve, adult
Species:	Human (Homo sapiens)
Library ID:	CNhs12857
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	M
age	77
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	NA
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	R1234136-10
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005003

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12857		CAGE		DRX008662		DRR009534

Accession ID Hg19

Library id		BAM		CTSS
CNhs12857		DRZ000959		DRZ002344

Accession ID Hg38

Library id		BAM		CTSS
CNhs12857		DRZ012309		DRZ013694

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	1.13
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.362
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.725
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.235
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.235
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0115
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.275
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	1.221
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0.235
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0.235
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.324
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.282
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.958
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.235
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.199
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.235
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0716
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.63
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.387
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.387
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.122
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.235
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.311
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12857

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00454
MA0003.1	MA0003.1	0.574
MA0004.1	MA0004.1	0.111
MA0006.1	MA0006.1	0.922
MA0007.1	MA0007.1	0.682
MA0009.1	MA0009.1	0.218
MA0014.1	MA0014.1	0.0958
MA0017.1	MA0017.1	0.333
MA0018.2	MA0018.2	0.247
MA0019.1	MA0019.1	0.949
MA0024.1	MA0024.1	0.00222
MA0025.1	MA0025.1	0.147
MA0027.1	MA0027.1	0.916
MA0028.1	MA0028.1	8.74207e-7
MA0029.1	MA0029.1	0.981
MA0030.1	MA0030.1	0.786
MA0031.1	MA0031.1	0.844
MA0035.2	MA0035.2	0.606
MA0038.1	MA0038.1	0.00848
MA0039.2	MA0039.2	0.00614
MA0040.1	MA0040.1	0.517
MA0041.1	MA0041.1	0.54
MA0042.1	MA0042.1	0.851
MA0043.1	MA0043.1	0.701
MA0046.1	MA0046.1	0.0558
MA0047.2	MA0047.2	0.634
MA0048.1	MA0048.1	0.543
MA0050.1	MA0050.1	0.731
MA0051.1	MA0051.1	0.875
MA0052.1	MA0052.1	8.02048e-8
MA0055.1	MA0055.1	0.153
MA0057.1	MA0057.1	0.72
MA0058.1	MA0058.1	0.0143
MA0059.1	MA0059.1	0.124
MA0060.1	MA0060.1	2.93549e-8
MA0061.1	MA0061.1	0.481
MA0062.2	MA0062.2	1.70683e-11
MA0065.2	MA0065.2	0.0308
MA0066.1	MA0066.1	0.156
MA0067.1	MA0067.1	0.791
MA0068.1	MA0068.1	0.124
MA0069.1	MA0069.1	0.506
MA0070.1	MA0070.1	0.293
MA0071.1	MA0071.1	0.298
MA0072.1	MA0072.1	0.229
MA0073.1	MA0073.1	0.967
MA0074.1	MA0074.1	0.97
MA0076.1	MA0076.1	1.44707e-10
MA0077.1	MA0077.1	0.374
MA0078.1	MA0078.1	0.8
MA0079.2	MA0079.2	0.556
MA0080.2	MA0080.2	0.00924
MA0081.1	MA0081.1	0.117
MA0083.1	MA0083.1	0.00755
MA0084.1	MA0084.1	0.388
MA0087.1	MA0087.1	0.339
MA0088.1	MA0088.1	0.0424
MA0090.1	MA0090.1	0.00308
MA0091.1	MA0091.1	0.451
MA0092.1	MA0092.1	0.208
MA0093.1	MA0093.1	0.053
MA0099.2	MA0099.2	9.34849e-10
MA0100.1	MA0100.1	0.0146
MA0101.1	MA0101.1	0.301
MA0102.2	MA0102.2	0.0437
MA0103.1	MA0103.1	5.79785e-4
MA0104.2	MA0104.2	0.146
MA0105.1	MA0105.1	0.0228
MA0106.1	MA0106.1	0.912
MA0107.1	MA0107.1	0.131
MA0108.2	MA0108.2	4.93993e-14
MA0111.1	MA0111.1	0.393
MA0112.2	MA0112.2	0.23
MA0113.1	MA0113.1	0.0169
MA0114.1	MA0114.1	0.0488
MA0115.1	MA0115.1	0.556
MA0116.1	MA0116.1	0.00478
MA0117.1	MA0117.1	0.836
MA0119.1	MA0119.1	0.199
MA0122.1	MA0122.1	0.523
MA0124.1	MA0124.1	0.584
MA0125.1	MA0125.1	0.174
MA0131.1	MA0131.1	0.722
MA0135.1	MA0135.1	0.111
MA0136.1	MA0136.1	6.81433e-4
MA0137.2	MA0137.2	1.74782e-5
MA0138.2	MA0138.2	0.479
MA0139.1	MA0139.1	1.97769e-4
MA0140.1	MA0140.1	0.338
MA0141.1	MA0141.1	0.661
MA0142.1	MA0142.1	0.0408
MA0143.1	MA0143.1	0.558
MA0144.1	MA0144.1	0.00687
MA0145.1	MA0145.1	0.66
MA0146.1	MA0146.1	0.0675
MA0147.1	MA0147.1	0.324
MA0148.1	MA0148.1	0.782
MA0149.1	MA0149.1	0.588
MA0150.1	MA0150.1	0.0831
MA0152.1	MA0152.1	0.116
MA0153.1	MA0153.1	0.256
MA0154.1	MA0154.1	0.267
MA0155.1	MA0155.1	0.396
MA0156.1	MA0156.1	1.14343e-5
MA0157.1	MA0157.1	0.514
MA0159.1	MA0159.1	0.302
MA0160.1	MA0160.1	0.871
MA0162.1	MA0162.1	0.206
MA0163.1	MA0163.1	0.00158
MA0164.1	MA0164.1	0.974
MA0258.1	MA0258.1	0.599
MA0259.1	MA0259.1	0.539

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12857

Novel motif	Logo	P-value
1	1	0.39
10	10	0.23
100	100	0.946
101	101	0.806
102	102	0.207
103	103	0.00856
104	104	0.465
105	105	0.379
106	106	0.155
107	107	0.043
108	108	0.0566
109	109	0.00601
11	11	0.216
110	110	0.185
111	111	0.732
112	112	0.542
113	113	0.0158
114	114	0.855
115	115	0.17
116	116	0.912
117	117	0.0331
118	118	0.0607
119	119	0.192
12	12	0.741
120	120	0.0853
121	121	0.256
122	122	0.194
123	123	0.035
124	124	0.461
125	125	0.609
126	126	0.998
127	127	0.0658
128	128	0.141
129	129	0.412
13	13	0.538
130	130	0.286
131	131	0.225
132	132	0.183
133	133	0.27
134	134	0.485
135	135	0.938
136	136	0.0308
137	137	0.396
138	138	0.724
139	139	0.127
14	14	0.76
140	140	0.0584
141	141	0.65
142	142	0.704
143	143	0.106
144	144	0.879
145	145	0.339
146	146	0.759
147	147	0.207
148	148	0.861
149	149	0.598
15	15	0.278
150	150	0.806
151	151	0.775
152	152	0.909
153	153	0.0479
154	154	0.782
155	155	0.363
156	156	0.463
157	157	0.406
158	158	0.294
159	159	0.4
16	16	0.0104
160	160	0.445
161	161	0.0558
162	162	0.946
163	163	0.87
164	164	0.478
165	165	0.0919
166	166	0.581
167	167	0.783
168	168	0.642
169	169	0.308
17	17	0.678
18	18	0.103
19	19	0.902
2	2	0.726
20	20	0.946
21	21	0.538
22	22	0.715
23	23	0.104
24	24	0.0154
25	25	0.116
26	26	0.721
27	27	0.0381
28	28	0.998
29	29	5.29635e-4
3	3	0.378
30	30	0.671
31	31	0.704
32	32	0.0161
33	33	0.129
34	34	0.365
35	35	0.859
36	36	0.18
37	37	0.249
38	38	0.66
39	39	0.0723
4	4	0.313
40	40	0.00583
41	41	0.414
42	42	0.759
43	43	0.579
44	44	0.196
45	45	0.79
46	46	0.633
47	47	0.0134
48	48	0.135
49	49	0.734
5	5	0.663
50	50	0.278
51	51	0.588
52	52	0.137
53	53	0.289
54	54	0.649
55	55	0.933
56	56	0.41
57	57	0.878
58	58	0.473
59	59	0.0889
6	6	0.289
60	60	0.468
61	61	0.11
62	62	0.464
63	63	0.471
64	64	0.148
65	65	0.645
66	66	0.0206
67	67	0.485
68	68	0.378
69	69	0.338
7	7	0.391
70	70	0.356
71	71	0.0875
72	72	0.709
73	73	0.361
74	74	0.73
75	75	0.0378
76	76	0.689
77	77	0.655
78	78	0.947
79	79	0.87
8	8	0.209
80	80	0.884
81	81	0.476
82	82	0.88
83	83	0.996
84	84	0.71
85	85	0.088
86	86	0.651
87	87	2.22422e-5
88	88	0.555
89	89	0.264
9	9	0.995
90	90	0.699
91	91	0.201
92	92	0.297
93	93	0.327
94	94	0.361
95	95	2.93808e-4
96	96	0.314
97	97	0.574
98	98	0.909
99	99	0.719

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12857

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010207 human heart, tricuspid valve - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002134 (tricuspid valve)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0010313 (neural crest-derived structure)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0003978 (valve)
0002081 (cardiac atrium)
0004151 (cardiac chamber)
0000946 (cardial valve)
0002133 (atrioventricular valve)
0005208 (right atrium valve)
0010317 (germ layer / neural crest derived structure)
0004145 (outflow tract)
0005946 (outflow tract of atrium)
0004535 (cardiovascular system)
0005965 (outflow part of right atrium)
0001009 (circulatory system)
0002078 (right cardiac atrium)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010207 (human heart, tricuspid valve - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0003104 (mesenchyme)
UBERON:0005062 (neural fold)
UBERON:0007284 (presumptive neural plate)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005003
+|accession_numbers=CAGE;DRX008662;DRR009534;DRZ000959;DRZ002344;DRZ012309;DRZ013694
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0007100,UBERON:0000948,UBERON:0002134,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0003978,UBERON:0002081,UBERON:0004151,UBERON:0000946,UBERON:0002133,UBERON:0005208,UBERON:0010317,UBERON:0004145,UBERON:0005946,UBERON:0004535,UBERON:0005965,UBERON:0001009,UBERON:0002078
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.31!262.74!SOX18;;chr12:52437488..52437507,+!p2@NR4A1!2.16!145.01!NR4A1;;chr9:102584159..102584174,+!p2@NR4A3!2.00!173.01!NR4A3;;chr6:134210243..134210257,+!p1@TCF21!2.00!99.78!TCF21;;chr7:35293685..35293718,-!p1@TBX20!1.99!97.63!TBX20;;chr1:40105299..40105326,-!p1@HEYL!1.91!81.12!HEYL;;chr8:10588010..10588030,-!p1@SOX7!1.79!61.02!SOX7;;chr11:113930425..113930471,+!p1@ZBTB16!1.77!82.56!ZBTB16;;chr21:39870339..39870443,-!p1@ERG!1.77!57.43!ERG;;chr5:71803177..71803255,-!p1@ZNF366!1.73!53.12!ZNF366;;chr12:52445218..52445237,+!p1@NR4A1!1.70!584.35!NR4A1;;chr15:42749722..42749739,-!p2@ZFP106!1.69!83.99!ZFP106;;chr3:169381420..169381535,-!p1@MECOM!1.65!50.97!MECOM;;chr19:46801639..46801699,+!p1@HIF3A!1.62!40.92!HIF3A;;chr20:51588873..51588953,+!p1@TSHZ2!1.59!49.53!TSHZ2;;chr4:174451370..174451387,-!p1@HAND2!1.56!35.18!HAND2;;chr8:11561684..11561751,+!p1@GATA4!1.55!34.46!GATA4;;chr5:172662197..172662216,-!p1@NKX2-5!1.50!30.87!NKX2-5;;chr17:6926362..6926377,+!p1@BCL6B!1.49!30.15!BCL6B;;chr18:53068911..53068935,-!p4@TCF4!1.48!33.02!TCF4;;chr8:48650715..48650735,-!p1@CEBPD!1.45!3259.86!CEBPD;;chr10:35484053..35484076,+!p1@CREM!1.40!58.87!CREM;;chr9:102584262..102584276,+!p1@NR4A3!1.38!50.25!NR4A3;;chr3:21792682..21792720,-!p1@ZNF385D!1.37!22.25!ZNF385D;;chr8:55370487..55370503,+!p1@SOX17!1.35!21.54!SOX17;;chr20:51589133..51589159,+!p2@TSHZ2!1.34!20.82!TSHZ2;;chr7:28448965..28448994,+!p2@CREB5!1.33!70.35!CREB5;;chr17:1959369..1959388,+!p2@HIC1!1.32!51.69!HIC1;;chr14:75988771..75988826,+!p1@BATF!1.31!25.84!BATF;;chr11:113930401..113930422,+!p3@ZBTB16!1.31!19.38!ZBTB16;;chr9:102584128..102584144,+!p3@NR4A3!1.30!35.89!NR4A3;;chr11:125034640..125034655,+!p1@PKNOX2!1.28!17.95!PKNOX2;;chr3:21792631..21792665,-!p3@ZNF385D!1.28!17.95!ZNF385D;;chrY:21906594..21906622,-!p1@KDM5D!1.28!17.95!KDM5D;;chr19:22193731..22193751,-!p1@ZNF208!1.26!17.23!ZNF208;;chr7:44143925..44143970,+!p1@AEBP1!1.25!368.27!AEBP1;;chr18:77155922..77155939,+!p1@NFATC1!1.24!44.51!NFATC1;;chr7:44143978..44143989,+!p2@AEBP1!1.24!30.15!AEBP1;;chr1:170633348..170633399,+!p2@PRRX1!1.24!22.25!PRRX1;;chr9:124991204..124991246,-!p1@LHX6!1.23!15.79!LHX6;;chr2:46524537..46524553,+!p1@EPAS1!1.21!1479.54!EPAS1;;chr5:158526917..158526932,-!p1@EBF1!1.21!37.33!EBF1;;chr11:113930291..113930339,+!p2@ZBTB16!1.20!24.41!ZBTB16;;chr1:158985493..158985535,+!p4@IFI16!1.19!22.25!IFI16;;chr18:45935720..45935772,-!p1@ZBTB7C!1.19!14.36!ZBTB7C;;chr18:19749386..19749404,+!p2@GATA6!1.18!20.10!GATA6;;chr11:47400078..47400106,-!p1@SPI1!1.17!13.64!SPI1;;chr3:187463179..187463201,-!p2@BCL6!1.16!55.28!BCL6;;chr6:126240380..126240430,+!p2@NCOA7!1.16!34.46!NCOA7;;chr2:145277882..145277967,-!p3@ZEB2!1.16!22.97!ZEB2;;chr5:158526459..158526481,-!p2@EBF1!1.16!17.95!EBF1;;chr19:16435625..16435682,+!p1@KLF2!1.14!412.06!KLF2;;chr16:85932760..85932775,+!p1@IRF8!1.14!12.92!IRF8;;chr19:54058073..54058088,+!p1@ZNF331!1.14!12.92!ZNF331;;chr20:51589732..51589769,+!p3@TSHZ2!1.14!12.92!TSHZ2;;chr3:21792790..21792824,-!p4@ZNF385D!1.14!12.92!ZNF385D;;chr9:94186085..94186096,-!p3@NFIL3!1.13!20.82!NFIL3;;chr3:126076242..126076257,-!p1@KLF15!1.12!15.08!KLF15;;chr17:41739283..41739297,-!p1@MEOX1!1.12!12.20!MEOX1;;chr9:94186101..94186122,-!p1@NFIL3!1.11!164.39!NFIL3;;chr12:3069037..3069119,+!p2@TEAD4!1.11!41.64!TEAD4;;chr12:96588368..96588394,+!p3@ELK3!1.11!32.30!ELK3;;chr14:35873101..35873119,-!p6@NFKBIA!1.11!15.79!NFKBIA;;chr1:61548225..61548299,+!p1@NFIA!1.10!150.75!NFIA;;chr1:47697539..47697573,-!p3@TAL1!1.10!11.49!TAL1;;chr20:590944..590960,-!p1@TCF15!1.10!11.49!TCF15;;chr9:132427883..132427951,+!p2@PRRX2!1.10!11.49!PRRX2;;chr1:170632285..170632309,+!p1@PRRX1!1.09!12.92!PRRX1;;chr3:21792585..21792625,-!p2@ZNF385D!1.08!12.20!ZNF385D;;chr2:28615716..28615733,+!p1@FOSL2!1.07!508.25!FOSL2;;chr7:44143997..44144008,+!p3@AEBP1!1.07!13.64!AEBP1;;chr2:68592406..68592424,+!p1@PLEK!1.07!10.77!PLEK;;chr18:53177984..53178004,-!p17@TCF4!1.07!10.77!TCF4;;chr9:102584241..102584261,+!p4@NR4A3!1.06!16.51!NR4A3;;chr18:19749541..19749557,+!p1@GATA6!1.05!32.30!GATA6;;chr12:10875658..10875708,-!p2@CSDA!1.05!23.69!CSDA;;chr3:5021268..5021282,+!p4@BHLHE40!1.05!20.82!BHLHE40;;chr10:63809013..63809041,+!p3@ARID5B!1.04!56.71!ARID5B;;chr8:25902876..25902936,-!p1@EBF2!1.04!10.05!EBF2;;chr4:26165074..26165110,+!p9@RBPJ!1.04!10.05!RBPJ;;chr15:67430351..67430366,+!p10@SMAD3!1.04!10.05!SMAD3;;chr12:10875831..10876025,-!p1@CSDA!1.03!812.63!CSDA;;chr9:4300050..4300118,-!p1@GLIS3!1.03!64.61!GLIS3;;chr3:126076264..126076305,-!p2@KLF15!1.03!13.64!KLF15;;chr7:28448995..28449011,+!p4@CREB5!1.03!13.64!CREB5;;chr2:46612334..46612349,+!p6@EPAS1!1.03!12.92!EPAS1;;chr8:106330656..106330684,+!p1@ZFPM2!1.02!25.13!ZFPM2;;chr14:64971014..64971044,+!p4@ZBTB1!1.02!15.79!ZBTB1;;chr7:63505799..63505904,+!p1@ZNF727!1.01!9.33!ZNF727;;chr4:57547454..57547469,-!p1@HOPX!1.01!9.33!HOPX;;chr14:35873947..35873965,-!p1@NFKBIA!1.00!577.89!NFKBIA;;chr17:40540377..40540481,-!p1@STAT3!1.00!466.62!STAT3;;chr9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2.15!THAP4;;chr3:128212033..128212051,-!p1@GATA2!0.50!2.15!GATA2;;chr3:169381545..169381557,-!p10@MECOM!0.50!2.15!MECOM;;chr3:187455680..187455700,-!p4@BCL6!0.50!2.15!BCL6;;chr3:24536332..24536358,-!p2@THRB!0.50!2.15!THRB;;chr3:25470156..25470227,+!p2@RARB!0.50!2.15!RARB;;chr3:71180051..71180085,-!p21@FOXP1!0.50!2.15!FOXP1;;chr4:144434712..144434722,+!p9@SMARCA5!0.50!2.15!SMARCA5;;chr19:54041534..54041545,+!p11@ZNF331!0.50!2.15!ZNF331;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.50!2.15!PEG3;;chr1:10856694..10856715,-!p3@CASZ1!0.50!2.15!CASZ1;;chr1:158979922..158979933,+!p13@IFI16!0.50!2.15!IFI16;;chr1:158985553..158985574,+!p14@IFI16!0.50!2.15!IFI16;;chr1:212873162..212873188,-!p3@BATF3!0.50!2.15!BATF3;;chr1:216896780..216896800,-!p2@ESRRG!0.50!2.15!ESRRG;;chr1:217263131..217263207,-!p4@ESRRG!0.50!2.15!ESRRG;;chr1:47695003..47695042,-!p2@TAL1!0.50!2.15!TAL1;;chr1:8585919..8585943,-!p18@RERE!0.50!2.15!RERE;;chr20:50179334..50179343,-!p3@NFATC2!0.50!2.15!NFATC2;;chr20:51589167..51589178,+!p14@TSHZ2!0.50!2.15!TSHZ2;;chr20:51589371..51589384,+!p11@TSHZ2!0.50!2.15!TSHZ2;;chr20:51589792..51589811,+!p7@TSHZ2!0.50!2.15!TSHZ2;;chr21:40032884..40032915,-!p2@ERG!0.50!2.15!ERG;;chr21:40177089..40177115,+!p3@ETS2!0.50!2.15!ETS2;;chr5:158527104..158527135,-!p4@EBF1!0.50!2.15!EBF1;;chr5:158527253..158527264,-!p10@EBF1!0.50!2.15!EBF1;;chr5:172662303..172662320,-!p2@NKX2-5!0.50!2.15!NKX2-5;;chr5:2751762..2751784,-!p1@IRX2!0.50!2.15!IRX2;;chr5:88180342..88180365,-!p10@MEF2C!0.50!2.15!MEF2C;;chr6:126240490..126240501,+!p11@NCOA7!0.50!2.15!NCOA7;;chr6:28321971..28321995,-!p1@ZNF323!0.50!2.15!ZNF323;;chr7:15725757..15725828,-!p5@MEOX2!0.50!2.15!MEOX2;;chr7:73038839..73038862,-!p1@MLXIPL!0.50!2.15!MLXIPL;;chr8:123875520..123875536,+!p7@ZHX2!0.50!2.15!ZHX2;;chr8:72756380..72756427,-!p8@MSC!0.50!2.15!MSC;;chr10:21822967..21822980,+!p12@MLLT10!0.50!2.15!MLLT10;;chr11:113930955..113930969,+!p8@ZBTB16!0.50!2.15!ZBTB16;;chr11:125034586..125034604,+!p3@PKNOX2!0.50!2.15!PKNOX2;;chr11:128457446..128457461,-!p4@ETS1!0.50!2.15!ETS1;;chr11:32457103..32457123,-!p3@WT1!0.50!2.15!WT1;;chr11:64764402..64764413,-!p2@BATF2!0.50!2.15!BATF2;;chr12:10875713..10875719,-!p21@CSDA!0.50!2.15!CSDA;;chr12:26277994..26278001,-!p6@BHLHE41!0.50!2.15!BHLHE41;;chr14:105935576..105935594,+!p11@MTA1!0.50!2.15!MTA1;;chr14:35872542..35872553,-!p10@NFKBIA!0.50!2.15!NFKBIA;;chr15:67430381..67430396,+!p21@SMAD3!0.50!2.15!SMAD3;;chr16:49698178..49698209,-!p1@ZNF423!0.50!2.15!ZNF423;;chr16:54320280..54320291,-!p9@IRX3!0.50!2.15!IRX3;;chr16:67198683..67198698,+!p2@HSF4!0.50!2.15!HSF4;;chr17:40440359..40440386,+!p4@STAT5A!0.50!2.15!STAT5A;;chr17:40540591..40540600,-!p3@STAT3!0.50!2.15!STAT3;;chr17:45928521..45928539,-!p1@SP6!0.50!2.15!SP6;;chr17:45933057..45933064,-!p3@SP6!0.50!2.15!SP6;;chr18:22932004..22932021,-!p2@ZNF521!0.50!2.15!ZNF521;;chr18:42260840..42260860,+!p2@SETBP1!0.50!2.15!SETBP1;;chr18:53068893..53068902,-!p28@TCF4!0.50!2.15!TCF4;;chr18:6414849..6414876,-!p2@L3MBTL4!0.50!2.15!L3MBTL4;;chr9:4299638..4299651,-!p8@GLIS3!0.50!2.15!GLIS3;;chr9:16705069..16705086,-!p3@BNC2!0.50!2.15!BNC2;;chr9:73028433..73028444,-!p15@KLF9!0.50!2.15!KLF9;;chr9:16727978..16728010,-!p6@BNC2!0.50!2.15!BNC2;;chr10:111967345..111967422,+!p1@MXI1!0.49!45.94!MXI1;;chr19:57791328..57791377,+!p2@ZNF460!0.49!33.74!ZNF460;;chr1:164528410..164528428,+!p1@PBX1!0.49!20.82!PBX1;;chr6:41703296..41703367,-!p1@TFEB!0.49!13.64!TFEB;;chr19:45909594..45909625,-!p2@PPP1R13L!0.49!12.20!PPP1R13L;;chr15:37392724..37392757,-!p1@MEIS2!0.49!12.20!MEIS2;;chr2:25564750..25564807,-!p1@DNMT3A!0.49!10.05!DNMT3A;;chr6:126102254..126102289,+!p5@NCOA7!0.49!7.18!NCOA7;;chr7:86781778..86781789,+!p4@DMTF1!0.49!5.03!DMTF1;;chr10:21823218..21823240,+!p3@MLLT10!0.49!4.31!MLLT10;;chr19:57078972..57079027,+!p2@ZNF470!0.49!3.59!ZNF470;;chr20:52185283..52185294,-!p5@ZNF217!0.49!2.87!ZNF217;;chr6:106546808..106546833,+!p3@PRDM1!0.49!2.87!PRDM1;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!0.49!2.87!PRDM11;;chr2:70314601..70314622,+!p1@PCBP1!0.48!641.06!PCBP1;;chr19:19516561..19516644,+!p1@GATAD2A!0.48!58.87!GATAD2A;;chr1:40627038..40627071,+!p1@RLF!0.48!35.89!RLF;;chr3:141087339..141087387,+!p2@ZBTB38!0.48!28.00!ZBTB38;;chr19:12175535..12175554,+!p1@ZNF844!0.48!14.36!ZNF844;;chr5:43120995..43121052,+!p1@ZNF131!0.48!13.64!ZNF131;;chr5:178157651..178157689,-!p1@ZNF354A!0.48!10.77!ZNF354A;;chr10:94449703..94449718,+!p1@HHEX!0.48!10.05!HHEX;;chr19:44455368..44455396,+!p1@ZNF221!0.48!8.61!ZNF221;;chr12:122516626..122516645,+!p2@MLXIP!0.48!7.18!MLXIP;;chr12:104531785..104531812,-!p3@NFYB!0.48!6.46!NFYB;;chr11:58346585..58346607,+!p2@ZFP91!0.48!5.74!ZFP91;;chr14:24837368..24837401,+!p1@NFATC4!0.48!5.74!NFATC4;;chr12:133706820..133706881,-!p1@ZNF891!0.48!5.03!ZNF891;;chr16:73092791..73092831,-!p4@ZFHX3!0.48!4.31!ZFHX3;;chr2:113057415..113057477,+!p3@ZC3H6!0.48!2.87!ZC3H6;;chr11:695731..695765,-!p5@DEAF1!0.48!2.87!DEAF1;;chr9:128510454..128510469,+!p3@PBX3!0.48!2.87!PBX3;;chr2:231280908..231280945,+!p1@SP100!0.47!104.09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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000946;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002081;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002342;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004145;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006603,UBERON:0003104,UBERON:0005062,UBERON:0007284,UBERON:0010316
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/heart%2520-%2520tricuspid%2520valve%252c%2520adult.CNhs12857.10207-103F9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/heart%2520-%2520tricuspid%2520valve%252c%2520adult.CNhs12857.10207-103F9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/heart%2520-%2520tricuspid%2520valve%252c%2520adult.CNhs12857.10207-103F9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/heart%2520-%2520tricuspid%2520valve%252c%2520adult.CNhs12857.10207-103F9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/heart%2520-%2520tricuspid%2520valve%252c%2520adult.CNhs12857.10207-103F9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10207-103F9
 |is_a=EFO:0002091;;FF:0010207
 |is_obsolete=
+|library_id=CNhs12857
+|library_id_phase_based=2:CNhs12857
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10207
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10207
 |name=heart - tricuspid valve, adult
 |namespace=FANTOM5
@@ Line 46: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12857,LSID973,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=103
 |rna_catalog_number=R1234136-10
@@ Line 60: / Line 78: @@
 |rna_tube_id=103F9
 |rna_weight_ug=10
-|sample_age=M
+|sample_age=77
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 76: / Line 95: @@
 |sample_id=10207
 |sample_note=
-|sample_sex=77
+|sample_sex=M
 |sample_species=Human (Homo sapiens)
 |sample_strain=
@@ Line 82: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10207-103F9;search_select_hide=table117:FF:10207-103F9
 }}

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FF:10207-103F9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 13:56, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0