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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008640
|DRA_sample_Accession=CAGE@SAMD00005080
|accession_numbers=CAGE;DRX008750;DRR009622;DRZ001047;DRZ002432
|accession_numbers=CAGE;DRX008750;DRR009622;DRZ001047;DRZ002432;DRZ012397;DRZ013782
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001723,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000020,UBERON:0001032,UBERON:0010317,UBERON:0001555,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0004456,UBERON:0001033
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001723,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000020,UBERON:0001032,UBERON:0010317,UBERON:0001555,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0004456,UBERON:0001033
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.75!555.61!HOPX;;chr11:34642612..34642646,+!p1@EHF!2.30!198.34!EHF;;chr12:52437488..52437507,+!p2@NR4A1!2.28!188.11!NR4A1;;chr15:42749722..42749739,-!p2@ZFP106!2.22!285.43!ZFP106;;chr17:80797886..80797906,-!p1@ZNF750!2.15!139.77!ZNF750;;chr5:134369879..134369898,-!p2@PITX1!2.05!111.04!PITX1;;chr5:134369905..134369972,-!p1@PITX1!1.85!105.16!PITX1;;chr20:62680984..62680999,-!p1@SOX18!1.79!78.60!SOX18;;chr15:101069113..101069169,-!p1@CERS3!1.78!59.22!CERS3;;chr14:37131058..37131139,+!p1@PAX9!1.77!57.69!PAX9;;chr11:129245526..129245553,+!p1@BARX2!1.76!57.04!BARX2;;chr17:7493405..7493419,-!p1@SOX15!1.75!55.30!SOX15;;chr1:24645921..24645973,+!p2@GRHL3!1.70!49.64!GRHL3;;chr1:24645832..24645853,+!p1@GRHL3!1.69!47.46!GRHL3;;chr8:10588010..10588030,-!p1@SOX7!1.64!43.11!SOX7;;chr12:81101404..81101421,+!p1@MYF6!1.62!40.93!MYF6;;chr1:201979743..201979762,+!p1@ELF3!1.62!40.28!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.57!36.36!ELF3;;chr11:65554528..65554546,+!p1@OVOL1!1.55!34.62!OVOL1;;chr3:189507432..189507459,+!p1@TP63!1.54!33.31!TP63;;chr11:113930425..113930471,+!p1@ZBTB16!1.53!46.59!ZBTB16;;chr19:46801639..46801699,+!p1@HIF3A!1.51!31.35!HIF3A;;chr13:73633131..73633149,+!p1@KLF5!1.44!272.36!KLF5;;chr12:54785074..54785122,-!p2@ZNF385A!1.44!40.28!ZNF385A;;chr17:53342311..53342400,+!p1@HLF!1.44!30.04!HLF;;chr14:75746722..75746777,+!p2@FOS!1.40!30.48!FOS;;chr1:209979467..209979494,-!p1@IRF6!1.40!27.21!IRF6;;chr11:34642656..34642667,+!p2@EHF!1.40!23.95!EHF;;chr1:151804244..151804310,-!p1@RORC!1.39!23.51!RORC;;chr11:129245736..129245758,+!p2@BARX2!1.39!23.30!BARX2;;chr20:55204351..55204377,+!p1@TFAP2C!1.37!28.09!TFAP2C;;chr6:10415276..10415341,-!p2@TFAP2A!1.37!27.21!TFAP2A;;chr1:209979411..209979433,-!p2@IRF6!1.37!22.21!IRF6;;chr21:39870339..39870443,-!p1@ERG!1.35!21.55!ERG;;chr18:45663490..45663528,-!p2@ZBTB7C!1.35!21.34!ZBTB7C;;chr1:170632285..170632309,+!p1@PRRX1!1.34!23.51!PRRX1;;chr7:73038839..73038862,-!p1@MLXIPL!1.33!20.47!MLXIPL;;chr12:81101472..81101483,+!p2@MYF6!1.33!20.25!MYF6;;chr1:203055129..203055147,-!p1@MYOG!1.32!20.03!MYOG;;chr19:45971246..45971265,+!p1@FOSB!1.31!353.14!FOSB;;chr11:125034640..125034655,+!p1@PKNOX2!1.31!19.59!PKNOX2;;chr1:40105299..40105326,-!p1@HEYL!1.30!18.94!HEYL;;chr22:41763452..41763466,+!p2@TEF!1.29!18.72!TEF;;chr6:106534192..106534224,+!p1@PRDM1!1.28!49.86!PRDM1;;chr12:54785054..54785072,-!p4@ZNF385A!1.28!20.47!ZNF385A;;chr2:122042770..122042785,-!p1@TFCP2L1!1.27!17.64!TFCP2L1;;chr3:189349162..189349207,+!p2@TP63!1.26!17.20!TP63;;chr12:52445218..52445237,+!p1@NR4A1!1.24!200.30!NR4A1;;chr20:50179368..50179392,-!p2@NFATC2!1.24!21.12!NFATC2;;chrY:21906594..21906622,-!p1@KDM5D!1.24!16.33!KDM5D;;chr14:75745523..75745537,+!p1@FOS!1.23!1876.50!FOS;;chr9:110252035..110252057,-!p1@KLF4!1.22!243.84!KLF4;;chr4:111544219..111544240,-!p1@PITX2!1.22!15.46!PITX2;;chr7:15726243..15726293,-!p2@MEOX2!1.21!15.24!MEOX2;;chr14:61116183..61116208,-!p1@SIX1!1.20!56.61!SIX1;;chr7:77469439..77469459,+!p6@PHTF2!1.20!14.80!PHTF2;;chr8:25902876..25902936,-!p1@EBF2!1.20!14.80!EBF2;;chr16:79634624..79634642,-!p1@MAF!1.19!56.39!MAF;;chr12:10875658..10875708,-!p2@CSDA!1.18!32.00!CSDA;;chr2:10091815..10091864,+!p1@GRHL1!1.18!18.72!GRHL1;;chr12:10870927..10870966,-!p5@CSDA!1.17!13.93!CSDA;;chr22:19748231..19748317,+!p1@TBX1!1.17!13.72!TBX1;;chr8:55370487..55370503,+!p1@SOX17!1.17!13.72!SOX17;;chr2:70142232..70142251,+!p1@MXD1!1.16!75.77!MXD1;;chr17:26833339..26833378,+!p1@FOXN1!1.16!13.50!FOXN1;;chr4:57522598..57522664,-!p3@HOPX!1.15!13.28!HOPX;;chr5:71803177..71803255,-!p1@ZNF366!1.15!13.28!ZNF366;;chr6:34524093..34524135,-!p1@SPDEF!1.15!13.06!SPDEF;;chr11:65554563..65554576,+!p2@OVOL1!1.14!12.85!OVOL1;;chr20:39317868..39317884,-!p1@MAFB!1.13!148.05!MAFB;;chr1:216978721..216978728,-!p13@ESRRG!1.13!12.63!ESRRG;;chr7:15726296..15726315,-!p1@MEOX2!1.13!12.41!MEOX2;;chr17:80797863..80797874,-!p2@ZNF750!1.13!12.41!ZNF750;;chr6:1312325..1312340,+!p1@FOXQ1!1.12!19.81!FOXQ1;;chr6:106534230..106534254,+!p2@PRDM1!1.11!29.83!PRDM1;;chr9:102584159..102584174,+!p2@NR4A3!1.11!21.34!NR4A3;;chr8:102504651..102504683,+!p1@GRHL2!1.11!11.97!GRHL2;;chr17:48072574..48072597,-!p1@DLX3!1.11!11.76!DLX3;;chr10:64018918..64018936,+!p2@ZNF365!1.11!11.76!ZNF365;;chr1:170633262..170633285,+!p3@PRRX1!1.08!12.63!PRRX1;;chr11:12766597..12766618,+!p11@TEAD1!1.08!10.89!TEAD1;;chr3:111314186..111314204,-!p1@ZBED2!1.08!10.89!ZBED2;;chr9:100615499..100615519,+!p1@FOXE1!1.08!10.89!FOXE1;;chr1:170633348..170633399,+!p2@PRRX1!1.07!14.80!PRRX1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.07!10.67!PEG3;;chr3:189348969..189349018,+!p4@TP63!1.07!10.67!TP63;;chr19:33793430..33793447,-!p1@CEBPA!1.06!44.20!CEBPA;;chr12:10865870..10865888,-!p6@CSDA!1.06!14.37!CSDA;;chr15:83953397..83953425,-!p1@BNC1!1.06!12.19!BNC1;;chr3:181429704..181429722,+!p1@SOX2!1.06!10.45!SOX2;;chr2:238592039..238592054,+!p4@LRRFIP1!1.05!10.23!LRRFIP1;;chr4:57522674..57522699,-!p5@HOPX!1.05!10.23!HOPX;;chr1:6479968..6479986,-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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001557;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001723;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008814
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006595,UBERON:0008814,UBERON:0010056,UBERON:0010316
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006595,UBERON:0008814,UBERON:0010056,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/tongue%252c%2520adult.CNhs12853.10203-103F5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/tongue%252c%2520adult.CNhs12853.10203-103F5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/tongue%252c%2520adult.CNhs12853.10203-103F5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/tongue%252c%2520adult.CNhs12853.10203-103F5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/tongue%252c%2520adult.CNhs12853.10203-103F5.hg38.nobarcode.ctss.bed.gz
|id=FF:10203-103F5
|id=FF:10203-103F5
|is_a=EFO:0002091;;FF:0010203
|is_a=EFO:0002091;;FF:0010203
|is_obsolete=
|is_obsolete=
|library_id=CNhs12853
|library_id=CNhs12853
|library_id_phase_based=1:CNhs12853
|library_id_phase_based=2:CNhs12853
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10203
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10203
|name=tongue, adult
|name=tongue, adult
|namespace=FANTOM5
|namespace=FANTOM5
Line 51: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12853,LSID973,release012,COMPLETED
|profile_hcage=CNhs12853,LSID973,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 90: Line 101:
|top_motifs=MEF2{A,B,C,D}:5.76166372529;NR1H4:4.55319736315;TBP:4.35806904183;TFAP4:3.55847783036;TBX4,5:3.49943438861;ESRRA:3.34392883718;NR5A1,2:3.31978574059;NFE2L1:3.10458106306;MYOD1:2.86536697039;TFCP2:2.37839726372;ESR1:2.37442431435;FOXQ1:2.3342959077;SNAI1..3:2.33164926265;GLI1..3:2.19412039019;TFAP2{A,C}:2.14210889171;AR:2.06636560327;SPZ1:2.0479026343;FOXL1:1.94748593079;TAL1_TCF{3,4,12}:1.89675719652;TGIF1:1.89561750102;ZIC1..3:1.87149299453;NKX3-2:1.86879163517;NR6A1:1.85106365847;HAND1,2:1.83769858579;KLF4:1.82314706541;GATA4:1.79183704547;HOX{A4,D4}:1.78653716481;SRF:1.7735561062;ZEB1:1.73630924101;HMX1:1.68523413438;ZNF148:1.67187801544;ALX1:1.66810631704;SMAD1..7,9:1.63290018709;NFIX:1.63016248895;IKZF2:1.62510169363;PPARG:1.62030624919;UFEwm:1.61945828271;PAX1,9:1.5903022678;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.56601646163;MAFB:1.50703344021;PDX1:1.49123341962;SOX5:1.48555809525;TLX2:1.47807195908;RXRA_VDR{dimer}:1.46454523447;LMO2:1.44363588563;IKZF1:1.42147024893;ZNF423:1.41763412044;HSF1,2:1.41442266409;MYFfamily:1.35191409204;NHLH1,2:1.3231301068;RBPJ:1.28354679588;MTF1:1.27318260367;ZNF384:1.2713492049;TP53:1.23626500701;MYBL2:1.21211957586;TLX1..3_NFIC{dimer}:1.17851619088;GCM1,2:1.17753413697;POU3F1..4:1.09876263388;GTF2A1,2:1.08196852973;NKX2-2,8:1.0796209597;ALX4:1.0630506484;IRF7:1.01666916169;FOXM1:1.0129842747;RXR{A,B,G}:1.00896469645;MAZ:1.0081587854;FOXO1,3,4:0.920647474789;RREB1:0.911596331601;NFATC1..3:0.90735057599;SP1:0.90104762396;T:0.873644931488;YY1:0.832611203916;CUX2:0.824668747007;ZBTB6:0.823358053167;NKX6-1,2:0.782074646385;ATF2:0.755007103673;PAX5:0.746131452879;PATZ1:0.723130061662;PAX6:0.716831757078;TEAD1:0.701201652145;NKX2-1,4:0.665968722336;NR3C1:0.626645307383;EP300:0.599469631019;CDC5L:0.591978983092;STAT5{A,B}:0.529033366665;GTF2I:0.515862115971;NKX2-3_NKX2-5:0.507412397139;ARID5B:0.479545234299;HIC1:0.467664249996;REST:0.449392581959;ZNF238:0.438978099257;MED-1{core}:0.425943998644;XCPE1{core}:0.364598207199;BPTF:0.341682564556;JUN:0.335888909954;XBP1:0.335815778454;NANOG:0.317523067248;EVI1:0.267735107738;EBF1:0.249817980459;FOX{F1,F2,J1}:0.20326040258;TEF:0.184413942991;HES1:0.177025278524;SOX{8,9,10}:0.117939282193;POU2F1..3:0.116264352839;HNF4A_NR2F1,2:0.111449646382;POU1F1:0.108582502071;MZF1:0.0804980484339;POU6F1:0.071351447118;FOSL2:0.0702453297874;TFAP2B:0.0649210445475;EGR1..3:0.0580624513596;LEF1_TCF7_TCF7L1,2:0.0525502161452;POU5F1:0.0232172798283;RFX2..5_RFXANK_RFXAP:0.00418928985973;FOX{D1,D2}:-0.0155596278601;FOXN1:-0.0194852172086;ATF4:-0.0358082177221;ETS1,2:-0.0604802882267;ZBTB16:-0.0646047528116;IRF1,2:-0.0940119950219;SPI1:-0.11025308385;MTE{core}:-0.130358039544;FOS_FOS{B,L1}_JUN{B,D}:-0.153615026937;ATF6:-0.156066664673;STAT2,4,6:-0.172289063451;NFE2:-0.17388827202;PBX1:-0.192935279783;CDX1,2,4:-0.202920646045;bHLH_family:-0.224787761925;PITX1..3:-0.229850509076;GFI1B:-0.232903866193;GFI1:-0.236133990856;NFIL3:-0.254849228771;ZFP161:-0.256457229596;SREBF1,2:-0.256863823533;ZNF143:-0.275520080845;CEBPA,B_DDIT3:-0.278785973735;ATF5_CREB3:-0.312035983126;TOPORS:-0.312240074532;NFE2L2:-0.330762719663;NANOG{mouse}:-0.370335141634;ELF1,2,4:-0.373826485243;SPIB:-0.378312581759;E2F1..5:-0.383519793424;PAX2:-0.387872313606;STAT1,3:-0.39750762496;LHX3,4:-0.41161179457;NFKB1_REL_RELA:-0.428181695093;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.437043702385;RORA:-0.446943154189;ONECUT1,2:-0.464026485806;DMAP1_NCOR{1,2}_SMARC:-0.46666395732;CRX:-0.496449098623;NKX3-1:-0.497736315171;BREu{core}:-0.505185868185;PRDM1:-0.505781697866;BACH2:-0.506783524237;HLF:-0.515909995539;FOXP3:-0.527975323636;GZF1:-0.534891724923;NFY{A,B,C}:-0.588217551168;PAX3,7:-0.628666736136;CREB1:-0.63169659804;FOXA2:-0.715465972366;EN1,2:-0.73984337805;SOX17:-0.741569094185;SOX2:-0.756860760188;HNF1A:-0.781609340077;FOXP1:-0.871556552192;NRF1:-0.901930618069;RUNX1..3:-0.960078780889;PAX4:-0.99475562611;RFX1:-1.01153776882;ADNP_IRX_SIX_ZHX:-1.10397345353;HOX{A6,A7,B6,B7}:-1.12809687204;HOX{A5,B5}:-1.18265806625;HBP1_HMGB_SSRP1_UBTF:-1.19082378514;GATA6:-1.20331484162;AIRE:-1.24291248506;OCT4_SOX2{dimer}:-1.28348318205;TFDP1:-1.29716182156;VSX1,2:-1.38169549651;MYB:-1.42523771202;FOX{I1,J2}:-1.51573014038;AHR_ARNT_ARNT2:-1.56154788168;ELK1,4_GABP{A,B1}:-1.59986626686;HOXA9_MEIS1:-1.6582585443;FOXD3:-1.7129418304;DBP:-2.0275991471;HIF1A:-2.05898322341;HMGA1,2:-2.11937840155;PRRX1,2:-2.46573650674;PAX8:-2.82964448443
|top_motifs=MEF2{A,B,C,D}:5.76166372529;NR1H4:4.55319736315;TBP:4.35806904183;TFAP4:3.55847783036;TBX4,5:3.49943438861;ESRRA:3.34392883718;NR5A1,2:3.31978574059;NFE2L1:3.10458106306;MYOD1:2.86536697039;TFCP2:2.37839726372;ESR1:2.37442431435;FOXQ1:2.3342959077;SNAI1..3:2.33164926265;GLI1..3:2.19412039019;TFAP2{A,C}:2.14210889171;AR:2.06636560327;SPZ1:2.0479026343;FOXL1:1.94748593079;TAL1_TCF{3,4,12}:1.89675719652;TGIF1:1.89561750102;ZIC1..3:1.87149299453;NKX3-2:1.86879163517;NR6A1:1.85106365847;HAND1,2:1.83769858579;KLF4:1.82314706541;GATA4:1.79183704547;HOX{A4,D4}:1.78653716481;SRF:1.7735561062;ZEB1:1.73630924101;HMX1:1.68523413438;ZNF148:1.67187801544;ALX1:1.66810631704;SMAD1..7,9:1.63290018709;NFIX:1.63016248895;IKZF2:1.62510169363;PPARG:1.62030624919;UFEwm:1.61945828271;PAX1,9:1.5903022678;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.56601646163;MAFB:1.50703344021;PDX1:1.49123341962;SOX5:1.48555809525;TLX2:1.47807195908;RXRA_VDR{dimer}:1.46454523447;LMO2:1.44363588563;IKZF1:1.42147024893;ZNF423:1.41763412044;HSF1,2:1.41442266409;MYFfamily:1.35191409204;NHLH1,2:1.3231301068;RBPJ:1.28354679588;MTF1:1.27318260367;ZNF384:1.2713492049;TP53:1.23626500701;MYBL2:1.21211957586;TLX1..3_NFIC{dimer}:1.17851619088;GCM1,2:1.17753413697;POU3F1..4:1.09876263388;GTF2A1,2:1.08196852973;NKX2-2,8:1.0796209597;ALX4:1.0630506484;IRF7:1.01666916169;FOXM1:1.0129842747;RXR{A,B,G}:1.00896469645;MAZ:1.0081587854;FOXO1,3,4:0.920647474789;RREB1:0.911596331601;NFATC1..3:0.90735057599;SP1:0.90104762396;T:0.873644931488;YY1:0.832611203916;CUX2:0.824668747007;ZBTB6:0.823358053167;NKX6-1,2:0.782074646385;ATF2:0.755007103673;PAX5:0.746131452879;PATZ1:0.723130061662;PAX6:0.716831757078;TEAD1:0.701201652145;NKX2-1,4:0.665968722336;NR3C1:0.626645307383;EP300:0.599469631019;CDC5L:0.591978983092;STAT5{A,B}:0.529033366665;GTF2I:0.515862115971;NKX2-3_NKX2-5:0.507412397139;ARID5B:0.479545234299;HIC1:0.467664249996;REST:0.449392581959;ZNF238:0.438978099257;MED-1{core}:0.425943998644;XCPE1{core}:0.364598207199;BPTF:0.341682564556;JUN:0.335888909954;XBP1:0.335815778454;NANOG:0.317523067248;EVI1:0.267735107738;EBF1:0.249817980459;FOX{F1,F2,J1}:0.20326040258;TEF:0.184413942991;HES1:0.177025278524;SOX{8,9,10}:0.117939282193;POU2F1..3:0.116264352839;HNF4A_NR2F1,2:0.111449646382;POU1F1:0.108582502071;MZF1:0.0804980484339;POU6F1:0.071351447118;FOSL2:0.0702453297874;TFAP2B:0.0649210445475;EGR1..3:0.0580624513596;LEF1_TCF7_TCF7L1,2:0.0525502161452;POU5F1:0.0232172798283;RFX2..5_RFXANK_RFXAP:0.00418928985973;FOX{D1,D2}:-0.0155596278601;FOXN1:-0.0194852172086;ATF4:-0.0358082177221;ETS1,2:-0.0604802882267;ZBTB16:-0.0646047528116;IRF1,2:-0.0940119950219;SPI1:-0.11025308385;MTE{core}:-0.130358039544;FOS_FOS{B,L1}_JUN{B,D}:-0.153615026937;ATF6:-0.156066664673;STAT2,4,6:-0.172289063451;NFE2:-0.17388827202;PBX1:-0.192935279783;CDX1,2,4:-0.202920646045;bHLH_family:-0.224787761925;PITX1..3:-0.229850509076;GFI1B:-0.232903866193;GFI1:-0.236133990856;NFIL3:-0.254849228771;ZFP161:-0.256457229596;SREBF1,2:-0.256863823533;ZNF143:-0.275520080845;CEBPA,B_DDIT3:-0.278785973735;ATF5_CREB3:-0.312035983126;TOPORS:-0.312240074532;NFE2L2:-0.330762719663;NANOG{mouse}:-0.370335141634;ELF1,2,4:-0.373826485243;SPIB:-0.378312581759;E2F1..5:-0.383519793424;PAX2:-0.387872313606;STAT1,3:-0.39750762496;LHX3,4:-0.41161179457;NFKB1_REL_RELA:-0.428181695093;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.437043702385;RORA:-0.446943154189;ONECUT1,2:-0.464026485806;DMAP1_NCOR{1,2}_SMARC:-0.46666395732;CRX:-0.496449098623;NKX3-1:-0.497736315171;BREu{core}:-0.505185868185;PRDM1:-0.505781697866;BACH2:-0.506783524237;HLF:-0.515909995539;FOXP3:-0.527975323636;GZF1:-0.534891724923;NFY{A,B,C}:-0.588217551168;PAX3,7:-0.628666736136;CREB1:-0.63169659804;FOXA2:-0.715465972366;EN1,2:-0.73984337805;SOX17:-0.741569094185;SOX2:-0.756860760188;HNF1A:-0.781609340077;FOXP1:-0.871556552192;NRF1:-0.901930618069;RUNX1..3:-0.960078780889;PAX4:-0.99475562611;RFX1:-1.01153776882;ADNP_IRX_SIX_ZHX:-1.10397345353;HOX{A6,A7,B6,B7}:-1.12809687204;HOX{A5,B5}:-1.18265806625;HBP1_HMGB_SSRP1_UBTF:-1.19082378514;GATA6:-1.20331484162;AIRE:-1.24291248506;OCT4_SOX2{dimer}:-1.28348318205;TFDP1:-1.29716182156;VSX1,2:-1.38169549651;MYB:-1.42523771202;FOX{I1,J2}:-1.51573014038;AHR_ARNT_ARNT2:-1.56154788168;ELK1,4_GABP{A,B1}:-1.59986626686;HOXA9_MEIS1:-1.6582585443;FOXD3:-1.7129418304;DBP:-2.0275991471;HIF1A:-2.05898322341;HMGA1,2:-2.11937840155;PRRX1,2:-2.46573650674;PAX8:-2.82964448443
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10203-103F5;search_select_hide=table117:FF:10203-103F5
}}
}}

Latest revision as of 13:56, 3 June 2020

Name:tongue, adult
Species:Human (Homo sapiens)
Library ID:CNhs12853
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexM
age28
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationNA
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberR1234267-50
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005080
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12853 CAGE DRX008750 DRR009622
Accession ID Hg19

Library idBAMCTSS
CNhs12853 DRZ001047 DRZ002432
Accession ID Hg38

Library idBAMCTSS
CNhs12853 DRZ012397 DRZ013782
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0855
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0492
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0.218
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.272
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0107
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.218
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0046
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0702
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.539
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.218
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival1.236
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.157
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0.402
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.476
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0.0855
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.692
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.607
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0.052
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.389
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.692
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.471
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0855
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0855
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.485
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0.32
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.272
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0338
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0.157
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.218
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.0855
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0991
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0855
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.218
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0156
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0855
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.157
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0463
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.83
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0.946
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0.0855
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.0855
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.0855
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0855
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0.746
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0209
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0.402
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0.558
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12853

Jaspar motifP-value
MA0002.20.179
MA0003.10.129
MA0004.10.0302
MA0006.10.102
MA0007.10.43
MA0009.10.961
MA0014.10.903
MA0017.10.151
MA0018.20.00649
MA0019.10.0378
MA0024.10.0623
MA0025.10.464
MA0027.10.871
MA0028.14.53685e-6
MA0029.10.61
MA0030.10.968
MA0031.10.266
MA0035.20.0609
MA0038.10.013
MA0039.20.494
MA0040.10.95
MA0041.10.418
MA0042.10.75
MA0043.13.01681e-4
MA0046.10.00779
MA0047.20.708
MA0048.14.21031e-4
MA0050.12.68473e-4
MA0051.10.0112
MA0052.11.3823e-27
MA0055.10.00133
MA0057.10.2
MA0058.10.00257
MA0059.10.0266
MA0060.12.7766e-4
MA0061.10.0203
MA0062.21.51431e-11
MA0065.20.142
MA0066.10.691
MA0067.10.0455
MA0068.10.96
MA0069.10.852
MA0070.10.633
MA0071.10.872
MA0072.10.37
MA0073.10.817
MA0074.10.54
MA0076.15.62563e-7
MA0077.10.481
MA0078.10.402
MA0079.20.285
MA0080.21.19107e-4
MA0081.10.00905
MA0083.10.108
MA0084.10.626
MA0087.10.481
MA0088.10.308
MA0090.10.419
MA0091.10.0653
MA0092.10.367
MA0093.10.0212
MA0099.23.42099e-8
MA0100.10.0267
MA0101.10.00438
MA0102.20.0116
MA0103.10.00116
MA0104.20.00536
MA0105.10.186
MA0106.10.673
MA0107.10.00454
MA0108.22.79056e-19
MA0111.10.552
MA0112.23.44322e-4
MA0113.10.0139
MA0114.10.524
MA0115.10.0939
MA0116.10.772
MA0117.10.483
MA0119.10.495
MA0122.10.256
MA0124.10.776
MA0125.10.991
MA0131.10.0388
MA0135.10.203
MA0136.13.58086e-6
MA0137.20.255
MA0138.20.0937
MA0139.10.606
MA0140.10.0196
MA0141.10.0929
MA0142.10.456
MA0143.10.551
MA0144.10.75
MA0145.10.0189
MA0146.10.457
MA0147.10.00865
MA0148.10.902
MA0149.10.133
MA0150.10.027
MA0152.10.932
MA0153.10.879
MA0154.10.362
MA0155.10.151
MA0156.13.7369e-9
MA0157.10.414
MA0159.10.138
MA0160.10.359
MA0162.10.107
MA0163.10.381
MA0164.10.914
MA0258.10.0152
MA0259.10.0395



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12853

Novel motifP-value
10.598
100.409
1000.421
1010.943
1020.521
1030.944
1040.686
1050.716
1060.0603
1070.028
1080.14
1090.775
110.68
1100.963
1110.528
1120.032
1130.992
1140.862
1150.00276
1160.206
1170.321
1180.143
1190.169
120.697
1200.528
1210.578
1220.293
1230.0258
1240.107
1250.738
1260.357
1270.465
1280.179
1290.858
130.773
1300.497
1310.505
1320.0962
1330.00976
1340.0629
1350.0197
1360.835
1370.19
1380.908
1390.155
140.694
1400.616
1410.48
1420.775
1430.0714
1440.715
1450.779
1460.483
1470.00772
1480.325
1490.0156
150.552
1500.568
1510.382
1520.084
1530.249
1540.707
1550.473
1560.0956
1570.917
1580.0919
1590.507
160.101
1600.303
1610.663
1620.794
1630.301
1640.282
1650.00929
1660.13
1670.208
1680.386
1690.0108
170.418
180.832
190.067
20.0108
200.0166
210.115
220.105
230.288
240.613
250.683
260.933
270.388
280.941
290.374
30.949
300.00353
310.554
320.0864
330.882
340.582
350.872
360.0166
370.38
380.634
390.177
40.666
400.461
410.524
420.467
430.951
444.3413e-4
450.0485
460.596
470.977
480.935
490.792
50.821
500.538
510.989
520.106
530.793
540.669
550.877
560.908
570.698
580.68
590.0829
60.961
600.123
610.672
620.498
630.211
640.981
650.267
660.0149
670.259
680.31
690.269
70.492
700.644
710.889
720.49
730.269
740.0479
750.976
760.0439
770.0183
780.178
790.169
80.459
800.792
810.0962
820.35
830.823
840.374
850.0245
860.419
870.693
880.631
890.0128
90.542
900.3
910.117
920.19
930.982
940.154
950.631
960.99
970.484
980.723
990.0701



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12853


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001723 (tongue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000020 (sense organ)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0004456 (entire sense organ system)
0001033 (gustatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010203 (human tongue - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0008814 (pharyngeal arch system)
UBERON:0010056 (future tongue)
UBERON:0010316 (germ layer / neural crest)

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