FF:10195-103E6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004856 | ||
|accession_numbers=CAGE;DRX008695;DRR009567;DRZ000992;DRZ002377;DRZ012342;DRZ013727 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0003112,UBERON:0000033,UBERON:0000479,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0011158,UBERON:0011159,UBERON:0010317,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0003128,UBERON:0011137,UBERON:0001703,UBERON:0002241,UBERON:0010323,UBERON:0003129 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010195 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/olfactory%2520region%252c%2520adult.CNhs12611.10195-103E6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/olfactory%2520region%252c%2520adult.CNhs12611.10195-103E6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/olfactory%2520region%252c%2520adult.CNhs12611.10195-103E6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/olfactory%2520region%252c%2520adult.CNhs12611.10195-103E6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/olfactory%2520region%252c%2520adult.CNhs12611.10195-103E6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10195-103E6 | |id=FF:10195-103E6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010195 | ||
|is_obsolete= | |||
|library_id=CNhs12611 | |||
|library_id_phase_based=2:CNhs12611 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10195 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10195 | |||
|name=olfactory region, adult | |name=olfactory region, adult | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12611,LSID952,release012,COMPLETED | |profile_hcage=CNhs12611,LSID952,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number=R1234063-10 | |rna_catalog_number=R1234063-10 | ||
| Line 54: | Line 76: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type= | |rna_sample_type= | ||
|rna_tube_id= | |rna_tube_id=1.03E+08 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age=87 | |sample_age=87 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.87721242984351e-278!GO:0005737;cytoplasm;3.82155144005102e-159!GO:0044444;cytoplasmic part;4.19724506942966e-104!GO:0043226;organelle;7.0821369822602e-98!GO:0043229;intracellular organelle;2.20955809229567e-97!GO:0043227;membrane-bound organelle;6.45617889611828e-90!GO:0043231;intracellular membrane-bound organelle;9.55345896050384e-90!GO:0044422;organelle part;2.71433653280176e-66!GO:0005515;protein binding;1.12739516183268e-65!GO:0044446;intracellular organelle part;2.68599672941223e-65!GO:0032991;macromolecular complex;4.81880252663933e-62!GO:0016043;cellular component organization and biogenesis;1.6788843743583e-46!GO:0005739;mitochondrion;3.70082819365732e-44!GO:0030529;ribonucleoprotein complex;1.77963317852503e-42!GO:0003723;RNA binding;7.93314263703024e-40!GO:0015031;protein transport;1.13300534410351e-37!GO:0033036;macromolecule localization;1.13300534410351e-37!GO:0031090;organelle membrane;3.74635245146461e-36!GO:0008104;protein localization;3.69967485106028e-34!GO:0043234;protein complex;3.71206666485278e-34!GO:0045184;establishment of protein localization;1.24735875119728e-33!GO:0044429;mitochondrial part;1.19612419576113e-32!GO:0043233;organelle lumen;4.65514759233269e-31!GO:0031974;membrane-enclosed lumen;4.65514759233269e-31!GO:0046907;intracellular transport;1.42576022398903e-30!GO:0044428;nuclear part;1.0538840015957e-28!GO:0051649;establishment of cellular localization;6.27632964974735e-28!GO:0051641;cellular localization;1.21208052394125e-27!GO:0031975;envelope;2.46718001717077e-26!GO:0031967;organelle envelope;3.40541243549509e-26!GO:0016192;vesicle-mediated transport;7.14461829375754e-26!GO:0005829;cytosol;2.29879270142643e-25!GO:0016071;mRNA metabolic process;4.03166610762823e-25!GO:0005840;ribosome;4.60473834736519e-24!GO:0006396;RNA processing;9.82378043485423e-24!GO:0008380;RNA splicing;4.58733510919984e-23!GO:0044238;primary metabolic process;8.18730268762322e-23!GO:0019538;protein metabolic process;2.09722343068512e-22!GO:0006119;oxidative phosphorylation;3.04220416726841e-22!GO:0005740;mitochondrial envelope;3.12904492358558e-22!GO:0031966;mitochondrial membrane;9.90491363834009e-22!GO:0006886;intracellular protein transport;1.69801747901656e-21!GO:0044237;cellular metabolic process;2.7262340310392e-21!GO:0006397;mRNA processing;6.75434542601404e-21!GO:0043170;macromolecule metabolic process;1.35027641327002e-20!GO:0006996;organelle organization and biogenesis;2.76356119252091e-20!GO:0019866;organelle inner membrane;2.90833974606009e-20!GO:0005634;nucleus;8.5272938074928e-20!GO:0005743;mitochondrial inner membrane;1.18770061159777e-19!GO:0005794;Golgi apparatus;1.28723319000583e-19!GO:0044260;cellular macromolecule metabolic process;3.3210493766215e-19!GO:0003735;structural constituent of ribosome;3.62947973798039e-19!GO:0031982;vesicle;1.07215403410562e-18!GO:0044267;cellular protein metabolic process;1.58979318943433e-18!GO:0031410;cytoplasmic vesicle;4.7370359389459e-18!GO:0006412;translation;5.6962104821019e-18!GO:0044455;mitochondrial membrane part;7.0546528917416e-18!GO:0031988;membrane-bound vesicle;1.17865119604888e-17!GO:0065003;macromolecular complex assembly;1.61157190668891e-17!GO:0031981;nuclear lumen;4.1872964134163e-17!GO:0016023;cytoplasmic membrane-bound vesicle;5.78118707301365e-17!GO:0033279;ribosomal subunit;1.43147101141853e-16!GO:0000166;nucleotide binding;1.80169576574361e-16!GO:0005746;mitochondrial respiratory chain;3.58738937336673e-16!GO:0005681;spliceosome;9.62881799407574e-16!GO:0022607;cellular component assembly;1.10770792574526e-15!GO:0050136;NADH dehydrogenase (quinone) activity;6.81893858777344e-15!GO:0003954;NADH dehydrogenase activity;6.81893858777344e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.81893858777344e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.2168780238412e-14!GO:0009058;biosynthetic process;1.55063745516342e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.55096012430623e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;1.90593183899016e-14!GO:0016462;pyrophosphatase activity;1.98657876024603e-14!GO:0017111;nucleoside-triphosphatase activity;1.61943849538513e-13!GO:0006512;ubiquitin cycle;2.62027263836819e-13!GO:0045045;secretory pathway;4.32686066679572e-13!GO:0048770;pigment granule;5.28517485629429e-13!GO:0042470;melanosome;5.28517485629429e-13!GO:0030964;NADH dehydrogenase complex (quinone);5.79197079960781e-13!GO:0045271;respiratory chain complex I;5.79197079960781e-13!GO:0005747;mitochondrial respiratory chain complex I;5.79197079960781e-13!GO:0031980;mitochondrial lumen;5.93799024952594e-13!GO:0005759;mitochondrial matrix;5.93799024952594e-13!GO:0012505;endomembrane system;9.43562323607089e-13!GO:0044249;cellular biosynthetic process;9.8623366945125e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.35963573111101e-12!GO:0042773;ATP synthesis coupled electron transport;1.35963573111101e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.78913992645012e-12!GO:0009059;macromolecule biosynthetic process;2.09374580245627e-12!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.34427517303564e-12!GO:0044445;cytosolic part;2.56918072692158e-12!GO:0006457;protein folding;2.86215485884338e-12!GO:0032553;ribonucleotide binding;3.72835697380963e-12!GO:0032555;purine ribonucleotide binding;3.72835697380963e-12!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.31365088884657e-12!GO:0016874;ligase activity;1.07522366682837e-11!GO:0043283;biopolymer metabolic process;1.23172899208063e-11!GO:0043412;biopolymer modification;1.65171463761011e-11!GO:0043228;non-membrane-bound organelle;1.81628367168268e-11!GO:0043232;intracellular non-membrane-bound organelle;1.81628367168268e-11!GO:0007264;small GTPase mediated signal transduction;1.98992372028192e-11!GO:0048193;Golgi vesicle transport;2.09824729343207e-11!GO:0017076;purine nucleotide binding;2.53487914199437e-11!GO:0043687;post-translational protein modification;2.55576917455681e-11!GO:0008092;cytoskeletal protein binding;3.31344441313543e-11!GO:0006810;transport;5.02673783795151e-11!GO:0006464;protein modification process;7.58060195015332e-11!GO:0005654;nucleoplasm;8.15194238363822e-11!GO:0007399;nervous system development;9.22097885782029e-11!GO:0022618;protein-RNA complex assembly;1.033372723123e-10!GO:0019829;cation-transporting ATPase activity;1.06137448376035e-10!GO:0030135;coated vesicle;1.28994904093087e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.6829431182917e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.93532947484044e-10!GO:0044451;nucleoplasm part;5.28677870834229e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;5.69161749380391e-10!GO:0006511;ubiquitin-dependent protein catabolic process;8.23930270338762e-10!GO:0051082;unfolded protein binding;8.43903237430946e-10!GO:0003924;GTPase activity;8.98493512775772e-10!GO:0019941;modification-dependent protein catabolic process;9.38671226323687e-10!GO:0043632;modification-dependent macromolecule catabolic process;9.38671226323687e-10!GO:0006605;protein targeting;9.95402767122832e-10!GO:0000502;proteasome complex (sensu Eukaryota);1.27044639557115e-09!GO:0044257;cellular protein catabolic process;1.4175630325745e-09!GO:0008135;translation factor activity, nucleic acid binding;1.57999662670016e-09!GO:0006793;phosphorus metabolic process;3.32207521815863e-09!GO:0006796;phosphate metabolic process;3.32207521815863e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.75750507694801e-09!GO:0015935;small ribosomal subunit;4.14875801956979e-09!GO:0030695;GTPase regulator activity;4.23708082552231e-09!GO:0008134;transcription factor binding;4.28379417833116e-09!GO:0005768;endosome;4.90098698835738e-09!GO:0007010;cytoskeleton organization and biogenesis;5.08231112556688e-09!GO:0044265;cellular macromolecule catabolic process;5.34931670861167e-09!GO:0008565;protein transporter activity;5.74270982372715e-09!GO:0010467;gene expression;5.74270982372715e-09!GO:0044431;Golgi apparatus part;5.95648145167242e-09!GO:0005083;small GTPase regulator activity;7.19377142658703e-09!GO:0015986;ATP synthesis coupled proton transport;7.63860374231598e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.63860374231598e-09!GO:0043005;neuron projection;9.15151250736417e-09!GO:0051179;localization;1.46708716826445e-08!GO:0005525;GTP binding;1.48775022911756e-08!GO:0051234;establishment of localization;2.00071061460524e-08!GO:0032940;secretion by cell;2.14224740083628e-08!GO:0005783;endoplasmic reticulum;2.35317881587271e-08!GO:0015934;large ribosomal subunit;2.38753704882116e-08!GO:0051186;cofactor metabolic process;4.28832627536621e-08!GO:0043285;biopolymer catabolic process;5.68839969969156e-08!GO:0006461;protein complex assembly;6.02000965605926e-08!GO:0008639;small protein conjugating enzyme activity;6.75490105233286e-08!GO:0016044;membrane organization and biogenesis;1.04093170977901e-07!GO:0030163;protein catabolic process;1.04093170977901e-07!GO:0016604;nuclear body;1.06987612057392e-07!GO:0004842;ubiquitin-protein ligase activity;1.13687292643101e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;1.35297990546027e-07!GO:0000375;RNA splicing, via transesterification reactions;1.35297990546027e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.35297990546027e-07!GO:0019717;synaptosome;1.42295293483914e-07!GO:0030136;clathrin-coated vesicle;1.44277374430831e-07!GO:0044248;cellular catabolic process;1.52654189260388e-07!GO:0015631;tubulin binding;1.69507194527788e-07!GO:0030036;actin cytoskeleton organization and biogenesis;2.01773489986658e-07!GO:0019787;small conjugating protein ligase activity;2.20658119359541e-07!GO:0006446;regulation of translational initiation;2.63287335402971e-07!GO:0016607;nuclear speck;2.67579398087233e-07!GO:0046034;ATP metabolic process;2.92503223200585e-07!GO:0032561;guanyl ribonucleotide binding;3.91906488398069e-07!GO:0019001;guanyl nucleotide binding;3.91906488398069e-07!GO:0009060;aerobic respiration;3.9205982112925e-07!GO:0006754;ATP biosynthetic process;4.13685820305533e-07!GO:0006753;nucleoside phosphate metabolic process;4.13685820305533e-07!GO:0005761;mitochondrial ribosome;4.6571404004068e-07!GO:0000313;organellar ribosome;4.6571404004068e-07!GO:0015630;microtubule cytoskeleton;4.80036907421342e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.29398075905583e-07!GO:0032559;adenyl ribonucleotide binding;5.65635672081122e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.88715259804418e-07!GO:0009144;purine nucleoside triphosphate metabolic process;6.88715259804418e-07!GO:0009057;macromolecule catabolic process;6.9545808861219e-07!GO:0045333;cellular respiration;6.99658749467499e-07!GO:0006413;translational initiation;7.10571134126443e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;8.54941523417489e-07!GO:0003743;translation initiation factor activity;9.14561993010997e-07!GO:0000139;Golgi membrane;9.30470047948803e-07!GO:0048471;perinuclear region of cytoplasm;9.39906373701876e-07!GO:0008287;protein serine/threonine phosphatase complex;9.65407947724824e-07!GO:0009141;nucleoside triphosphate metabolic process;9.80729934099153e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.04304479302477e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.21337752019467e-06!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.26948388509396e-06!GO:0016310;phosphorylation;1.2920412335349e-06!GO:0006163;purine nucleotide metabolic process;1.34452897798714e-06!GO:0009150;purine ribonucleotide metabolic process;1.40626851469395e-06!GO:0030029;actin filament-based process;1.40626851469395e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.4605783646419e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.4605783646419e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.52512581979847e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.52533927857812e-06!GO:0006164;purine nucleotide biosynthetic process;1.5580353878957e-06!GO:0006913;nucleocytoplasmic transport;1.78316873204402e-06!GO:0005524;ATP binding;1.90085184077133e-06!GO:0009055;electron carrier activity;2.06070639535035e-06!GO:0048475;coated membrane;2.06867193912714e-06!GO:0030117;membrane coat;2.06867193912714e-06!GO:0009142;nucleoside triphosphate biosynthetic process;2.30119834694817e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.30119834694817e-06!GO:0016881;acid-amino acid ligase activity;2.46719908206744e-06!GO:0051169;nuclear transport;2.72284313858742e-06!GO:0044440;endosomal part;2.82939476937812e-06!GO:0010008;endosome membrane;2.82939476937812e-06!GO:0030554;adenyl nucleotide binding;2.85976473326272e-06!GO:0003779;actin binding;3.08308233283042e-06!GO:0019899;enzyme binding;3.63866914626715e-06!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.6442129396996e-06!GO:0009259;ribonucleotide metabolic process;5.26933291684196e-06!GO:0006732;coenzyme metabolic process;5.52031280596701e-06!GO:0005730;nucleolus;5.65470381890174e-06!GO:0045259;proton-transporting ATP synthase complex;7.50966935292637e-06!GO:0005905;coated pit;7.84919144607928e-06!GO:0031965;nuclear membrane;8.16239853369773e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.19669532684833e-06!GO:0030425;dendrite;8.8050020234585e-06!GO:0009260;ribonucleotide biosynthetic process;9.28247899277998e-06!GO:0006099;tricarboxylic acid cycle;9.58407065123034e-06!GO:0046356;acetyl-CoA catabolic process;9.58407065123034e-06!GO:0007265;Ras protein signal transduction;1.17173179866052e-05!GO:0005770;late endosome;1.66103229844294e-05!GO:0042623;ATPase activity, coupled;1.66103229844294e-05!GO:0005874;microtubule;1.70521015157487e-05!GO:0009109;coenzyme catabolic process;1.9398464284732e-05!GO:0016887;ATPase activity;2.05540096470779e-05!GO:0005769;early endosome;2.35560165010881e-05!GO:0005635;nuclear envelope;2.36728491279239e-05!GO:0032446;protein modification by small protein conjugation;2.5619454212819e-05!GO:0008017;microtubule binding;2.64064656846062e-05!GO:0031252;leading edge;2.90071152128651e-05!GO:0022890;inorganic cation transmembrane transporter activity;3.07815449022143e-05!GO:0003712;transcription cofactor activity;3.96465779133319e-05!GO:0007242;intracellular signaling cascade;4.3320033049212e-05!GO:0006084;acetyl-CoA metabolic process;4.52880334417796e-05!GO:0016567;protein ubiquitination;4.83927175931857e-05!GO:0017038;protein import;5.14197493432429e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;5.27693696589279e-05!GO:0015399;primary active transmembrane transporter activity;5.27693696589279e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;5.2899011888445e-05!GO:0051128;regulation of cellular component organization and biogenesis;6.00749177810002e-05!GO:0044432;endoplasmic reticulum part;6.44866047149286e-05!GO:0005798;Golgi-associated vesicle;6.53810167807333e-05!GO:0030120;vesicle coat;6.87129336547603e-05!GO:0030662;coated vesicle membrane;6.87129336547603e-05!GO:0006897;endocytosis;6.88827397617669e-05!GO:0010324;membrane invagination;6.88827397617669e-05!GO:0051187;cofactor catabolic process;8.36147868470894e-05!GO:0051056;regulation of small GTPase mediated signal transduction;8.4267751432847e-05!GO:0008021;synaptic vesicle;9.63194337588254e-05!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000103848146050289!GO:0000245;spliceosome assembly;0.000103848146050289!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000104004192658598!GO:0048523;negative regulation of cellular process;0.000118127857710342!GO:0019226;transmission of nerve impulse;0.000153776016096144!GO:0000159;protein phosphatase type 2A complex;0.000154910538276481!GO:0043492;ATPase activity, coupled to movement of substances;0.000154910538276481!GO:0048489;synaptic vesicle transport;0.00017445071968227!GO:0008047;enzyme activator activity;0.000178950741489804!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00018463951734145!GO:0000902;cell morphogenesis;0.000193950586248132!GO:0032989;cellular structure morphogenesis;0.000193950586248132!GO:0007269;neurotransmitter secretion;0.000210241322808433!GO:0006323;DNA packaging;0.000217833043955333!GO:0016568;chromatin modification;0.000238125696890643!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000238403045234041!GO:0003729;mRNA binding;0.000282126282899545!GO:0005096;GTPase activator activity;0.00029683810325208!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000310360476809426!GO:0005793;ER-Golgi intermediate compartment;0.000320517767750469!GO:0006888;ER to Golgi vesicle-mediated transport;0.000332156536632882!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000354970848737126!GO:0030133;transport vesicle;0.000361726749093292!GO:0008601;protein phosphatase type 2A regulator activity;0.000365714732411272!GO:0045055;regulated secretory pathway;0.000380452369387375!GO:0006613;cotranslational protein targeting to membrane;0.000380452369387375!GO:0019208;phosphatase regulator activity;0.000385006785230937!GO:0030027;lamellipodium;0.000385473800550121!GO:0051188;cofactor biosynthetic process;0.000385473800550121!GO:0016564;transcription repressor activity;0.000399693846408717!GO:0051246;regulation of protein metabolic process;0.000419317966190745!GO:0005789;endoplasmic reticulum membrane;0.000431394391542646!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000449311706354788!GO:0030532;small nuclear ribonucleoprotein complex;0.000466046831970651!GO:0044453;nuclear membrane part;0.000487584105240772!GO:0000151;ubiquitin ligase complex;0.00048962964991456!GO:0016311;dephosphorylation;0.000514632831689669!GO:0009056;catabolic process;0.000517818405038305!GO:0004721;phosphoprotein phosphatase activity;0.000525672505054422!GO:0006752;group transfer coenzyme metabolic process;0.000554791934665114!GO:0019902;phosphatase binding;0.000626967951947623!GO:0006403;RNA localization;0.000636350607622392!GO:0030118;clathrin coat;0.000636657306470064!GO:0015980;energy derivation by oxidation of organic compounds;0.000714902251078717!GO:0005643;nuclear pore;0.000769303152107304!GO:0016197;endosome transport;0.000769377761433936!GO:0050657;nucleic acid transport;0.000778617822929441!GO:0051236;establishment of RNA localization;0.000778617822929441!GO:0050658;RNA transport;0.000778617822929441!GO:0005741;mitochondrial outer membrane;0.000803203049010113!GO:0008654;phospholipid biosynthetic process;0.000807608005493107!GO:0045786;negative regulation of progression through cell cycle;0.000859143608001862!GO:0006259;DNA metabolic process;0.00089657215450833!GO:0043566;structure-specific DNA binding;0.000926724211697609!GO:0007019;microtubule depolymerization;0.00102213685427216!GO:0016791;phosphoric monoester hydrolase activity;0.0010432413515625!GO:0031072;heat shock protein binding;0.00120410962609331!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00121095967961889!GO:0005773;vacuole;0.00125913807816937!GO:0005516;calmodulin binding;0.00129469739438483!GO:0019888;protein phosphatase regulator activity;0.00131278211121187!GO:0043623;cellular protein complex assembly;0.00132654688051853!GO:0048519;negative regulation of biological process;0.00146836022335838!GO:0031968;organelle outer membrane;0.00155325156002801!GO:0019867;outer membrane;0.00156577394369299!GO:0022406;membrane docking;0.00157592492196502!GO:0048278;vesicle docking;0.00157592492196502!GO:0006650;glycerophospholipid metabolic process;0.00157592492196502!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00157592492196502!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0015822450977593!GO:0006904;vesicle docking during exocytosis;0.00168869894201447!GO:0046578;regulation of Ras protein signal transduction;0.00173473301839257!GO:0006470;protein amino acid dephosphorylation;0.00173473301839257!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00180605690682838!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00180605690682838!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00180605690682838!GO:0006606;protein import into nucleus;0.00181031359447933!GO:0004722;protein serine/threonine phosphatase activity;0.00182793201737416!GO:0005875;microtubule associated complex;0.00188067341779359!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00189481804083978!GO:0004812;aminoacyl-tRNA ligase activity;0.00189481804083978!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00189481804083978!GO:0003697;single-stranded DNA binding;0.00201274078345339!GO:0016301;kinase activity;0.00206408359070231!GO:0005085;guanyl-nucleotide exchange factor activity;0.00212152953704191!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00214522186453624!GO:0004667;prostaglandin-D synthase activity;0.00214522186453624!GO:0050802;circadian sleep/wake cycle, sleep;0.00214522186453624!GO:0022410;circadian sleep/wake cycle process;0.00214522186453624!GO:0042749;regulation of circadian sleep/wake cycle;0.00214522186453624!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00216470034103488!GO:0005839;proteasome core complex (sensu Eukaryota);0.00219324020855951!GO:0001505;regulation of neurotransmitter levels;0.00222653848031773!GO:0051170;nuclear import;0.00234107702144249!GO:0003714;transcription corepressor activity;0.0023503615738648!GO:0009108;coenzyme biosynthetic process;0.00236053222494517!GO:0006892;post-Golgi vesicle-mediated transport;0.00237582705175168!GO:0003724;RNA helicase activity;0.00249854151684873!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00256051134723318!GO:0005938;cell cortex;0.00257202004341661!GO:0051087;chaperone binding;0.00262497207402311!GO:0008154;actin polymerization and/or depolymerization;0.00262497207402311!GO:0031901;early endosome membrane;0.00267365442587187!GO:0030426;growth cone;0.00274116258913372!GO:0046467;membrane lipid biosynthetic process;0.00274116258913372!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00286061979069693!GO:0016050;vesicle organization and biogenesis;0.00288249722664763!GO:0030427;site of polarized growth;0.00295425927957071!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00295439328954525!GO:0050767;regulation of neurogenesis;0.00303677829181511!GO:0048487;beta-tubulin binding;0.00303677829181511!GO:0005869;dynactin complex;0.00307078839597783!GO:0031114;regulation of microtubule depolymerization;0.00324402801462142!GO:0007026;negative regulation of microtubule depolymerization;0.00324402801462142!GO:0006607;NLS-bearing substrate import into nucleus;0.0034458327118707!GO:0007268;synaptic transmission;0.00344847411379189!GO:0005813;centrosome;0.0035078667445959!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00353473364691661!GO:0043038;amino acid activation;0.00355928328357222!GO:0006418;tRNA aminoacylation for protein translation;0.00355928328357222!GO:0043039;tRNA aminoacylation;0.00355928328357222!GO:0048167;regulation of synaptic plasticity;0.00382604130608006!GO:0043209;myelin sheath;0.0038519549831767!GO:0005048;signal sequence binding;0.00387820913017653!GO:0048699;generation of neurons;0.00388112909080438!GO:0006414;translational elongation;0.00399043732755901!GO:0008026;ATP-dependent helicase activity;0.00409956635754825!GO:0031902;late endosome membrane;0.00415960975511854!GO:0004674;protein serine/threonine kinase activity;0.00427856607009957!GO:0007017;microtubule-based process;0.00472976270634833!GO:0022008;neurogenesis;0.00492657016208008!GO:0007266;Rho protein signal transduction;0.00492752368930411!GO:0016070;RNA metabolic process;0.00499356720597166!GO:0019904;protein domain specific binding;0.00545103995425463!GO:0046488;phosphatidylinositol metabolic process;0.00548970733546871!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00552596248714372!GO:0055083;monovalent inorganic anion homeostasis;0.00552596248714372!GO:0055064;chloride ion homeostasis;0.00552596248714372!GO:0030644;cellular chloride ion homeostasis;0.00552596248714372!GO:0042254;ribosome biogenesis and assembly;0.00564195930593351!GO:0006891;intra-Golgi vesicle-mediated transport;0.00574470456682643!GO:0006612;protein targeting to membrane;0.00594340471402068!GO:0030054;cell junction;0.00608499318182953!GO:0030384;phosphoinositide metabolic process;0.00626596361357502!GO:0012506;vesicle membrane;0.00629205444575343!GO:0051261;protein depolymerization;0.0067458355422943!GO:0000314;organellar small ribosomal subunit;0.00683211323848507!GO:0005763;mitochondrial small ribosomal subunit;0.00683211323848507!GO:0051028;mRNA transport;0.0071142544647774!GO:0007272;ensheathment of neurons;0.00722592102160807!GO:0008366;axon ensheathment;0.00722592102160807!GO:0004298;threonine endopeptidase activity;0.00732913323255952!GO:0009966;regulation of signal transduction;0.00732913323255952!GO:0051920;peroxiredoxin activity;0.00737954693211897!GO:0050839;cell adhesion molecule binding;0.00738366518950966!GO:0043021;ribonucleoprotein binding;0.00738980142600374!GO:0019903;protein phosphatase binding;0.00759647433998583!GO:0006402;mRNA catabolic process;0.00793091538503488!GO:0030182;neuron differentiation;0.00798572083168645!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00802639333399846!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00802639333399846!GO:0006333;chromatin assembly or disassembly;0.00802639333399846!GO:0005815;microtubule organizing center;0.00808569108835887!GO:0030867;rough endoplasmic reticulum membrane;0.00810845626730941!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.00823701770970007!GO:0019198;transmembrane receptor protein phosphatase activity;0.00823701770970007!GO:0001578;microtubule bundle formation;0.00828324997840303!GO:0009117;nucleotide metabolic process;0.00828895767769283!GO:0050803;regulation of synapse structure and activity;0.00833726072099423!GO:0030660;Golgi-associated vesicle membrane;0.00857920654420763!GO:0051276;chromosome organization and biogenesis;0.00877283195096783!GO:0016740;transferase activity;0.00880723720197042!GO:0006643;membrane lipid metabolic process;0.00884413314078706!GO:0050811;GABA receptor binding;0.00884413314078706!GO:0000323;lytic vacuole;0.00884445709231827!GO:0005764;lysosome;0.00884445709231827!GO:0051427;hormone receptor binding;0.00885429966128981!GO:0004386;helicase activity;0.0089494430939921!GO:0051168;nuclear export;0.00911889571349226!GO:0003746;translation elongation factor activity;0.00972302684949439!GO:0003713;transcription coactivator activity;0.00980612190297751!GO:0016126;sterol biosynthetic process;0.00998817925522449!GO:0008139;nuclear localization sequence binding;0.0100822821841999!GO:0044448;cell cortex part;0.0101507861909397!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0107940900488957!GO:0005774;vacuolar membrane;0.0110875557267769!GO:0048500;signal recognition particle;0.0112134931338276!GO:0042578;phosphoric ester hydrolase activity;0.0115226479387397!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0118310373322965!GO:0001508;regulation of action potential;0.012041458571067!GO:0032011;ARF protein signal transduction;0.0122580852137048!GO:0032012;regulation of ARF protein signal transduction;0.0122580852137048!GO:0030658;transport vesicle membrane;0.0123772826673674!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0123772826673674!GO:0030424;axon;0.0128534609688565!GO:0005099;Ras GTPase activator activity;0.012938553809505!GO:0030132;clathrin coat of coated pit;0.0129595056619042!GO:0044433;cytoplasmic vesicle part;0.0132227335055437!GO:0015629;actin cytoskeleton;0.0139807913631494!GO:0051540;metal cluster binding;0.014043905436865!GO:0051536;iron-sulfur cluster binding;0.014043905436865!GO:0030030;cell projection organization and biogenesis;0.014043905436865!GO:0048858;cell projection morphogenesis;0.014043905436865!GO:0032990;cell part morphogenesis;0.014043905436865!GO:0005791;rough endoplasmic reticulum;0.0140648386244457!GO:0043087;regulation of GTPase activity;0.0141806454641285!GO:0030742;GTP-dependent protein binding;0.0142109744932879!GO:0044456;synapse part;0.0145430943349591!GO:0035257;nuclear hormone receptor binding;0.0151120960128156!GO:0031109;microtubule polymerization or depolymerization;0.0161234981701282!GO:0005762;mitochondrial large ribosomal subunit;0.0163718039785758!GO:0000315;organellar large ribosomal subunit;0.0163718039785758!GO:0030041;actin filament polymerization;0.0165550719040651!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0169737092354266!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.017010729809106!GO:0000062;acyl-CoA binding;0.0171814760056284!GO:0009892;negative regulation of metabolic process;0.0171814760056284!GO:0030125;clathrin vesicle coat;0.0180060290034888!GO:0030665;clathrin coated vesicle membrane;0.0180060290034888!GO:0016363;nuclear matrix;0.0182256243050353!GO:0008250;oligosaccharyl transferase complex;0.0182256243050353!GO:0008186;RNA-dependent ATPase activity;0.0183069622171912!GO:0030258;lipid modification;0.0185630096486377!GO:0065002;intracellular protein transport across a membrane;0.0185630096486377!GO:0019887;protein kinase regulator activity;0.0194326176352222!GO:0006916;anti-apoptosis;0.0194326176352222!GO:0005092;GDP-dissociation inhibitor activity;0.0197280627341999!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0198090979516075!GO:0006695;cholesterol biosynthetic process;0.0198100628712892!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.02019434556398!GO:0043681;protein import into mitochondrion;0.0203008959387559!GO:0004683;calmodulin-dependent protein kinase activity;0.0204116344236589!GO:0008180;signalosome;0.0205479921837828!GO:0006887;exocytosis;0.020606004349513!GO:0005885;Arp2/3 protein complex;0.0206093901306166!GO:0008088;axon cargo transport;0.0210823783177479!GO:0046930;pore complex;0.0217056187244597!GO:0045296;cadherin binding;0.0218968098225573!GO:0005868;cytoplasmic dynein complex;0.0218968098225573!GO:0008361;regulation of cell size;0.0218968098225573!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0220413782317018!GO:0006818;hydrogen transport;0.0228068996506353!GO:0016859;cis-trans isomerase activity;0.0229734114744153!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0234562939426453!GO:0030137;COPI-coated vesicle;0.0235871874674224!GO:0046474;glycerophospholipid biosynthetic process;0.0237808205322158!GO:0005952;cAMP-dependent protein kinase complex;0.0237808205322158!GO:0035035;histone acetyltransferase binding;0.0255084323083138!GO:0019894;kinesin binding;0.0256381022795981!GO:0006366;transcription from RNA polymerase II promoter;0.026455892627015!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0269608013862991!GO:0042802;identical protein binding;0.0275061473373276!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0275227705467749!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0275227705467749!GO:0051287;NAD binding;0.0278595032606702!GO:0000904;cellular morphogenesis during differentiation;0.0278640803673666!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0285314747608311!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0285314747608311!GO:0045047;protein targeting to ER;0.0285314747608311!GO:0043284;biopolymer biosynthetic process;0.0285589728058884!GO:0048666;neuron development;0.028637149726693!GO:0005765;lysosomal membrane;0.0289746229144796!GO:0009165;nucleotide biosynthetic process;0.0291962645485671!GO:0031371;ubiquitin conjugating enzyme complex;0.0291962645485671!GO:0000287;magnesium ion binding;0.0291962645485671!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0295820428900388!GO:0033043;regulation of organelle organization and biogenesis;0.0295820428900388!GO:0016079;synaptic vesicle exocytosis;0.0298411066632362!GO:0006661;phosphatidylinositol biosynthetic process;0.0300191389249139!GO:0007005;mitochondrion organization and biogenesis;0.030246003394494!GO:0015992;proton transport;0.0309576546822332!GO:0000059;protein import into nucleus, docking;0.0309768502268833!GO:0006091;generation of precursor metabolites and energy;0.0309905438779184!GO:0048468;cell development;0.0311421320889047!GO:0004576;oligosaccharyl transferase activity;0.0312073072040212!GO:0031124;mRNA 3'-end processing;0.0323607176297215!GO:0007034;vacuolar transport;0.0330702398663659!GO:0008219;cell death;0.0330702398663659!GO:0016265;death;0.0330702398663659!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0330702398663659!GO:0033130;acetylcholine receptor binding;0.0330702398663659!GO:0030659;cytoplasmic vesicle membrane;0.0331211661204222!GO:0044437;vacuolar part;0.0331271030062524!GO:0003676;nucleic acid binding;0.0333191284169571!GO:0008312;7S RNA binding;0.0333622906556189!GO:0005100;Rho GTPase activator activity;0.0333824824220218!GO:0006595;polyamine metabolic process;0.0338801065947078!GO:0016049;cell growth;0.0344466864100049!GO:0001726;ruffle;0.0344466864100049!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0344466864100049!GO:0015002;heme-copper terminal oxidase activity;0.0344466864100049!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0344466864100049!GO:0004129;cytochrome-c oxidase activity;0.0344466864100049!GO:0051726;regulation of cell cycle;0.0344624418591822!GO:0051539;4 iron, 4 sulfur cluster binding;0.0348264811842601!GO:0008022;protein C-terminus binding;0.0349901850551228!GO:0006665;sphingolipid metabolic process;0.035039880361674!GO:0016579;protein deubiquitination;0.0352221421585702!GO:0048667;neuron morphogenesis during differentiation;0.0363343127382213!GO:0048812;neurite morphogenesis;0.0363343127382213!GO:0031175;neurite development;0.036340530865171!GO:0019911;structural constituent of myelin sheath;0.0363435521211676!GO:0006376;mRNA splice site selection;0.0377251015700465!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0377251015700465!GO:0008286;insulin receptor signaling pathway;0.0380025813007561!GO:0016481;negative regulation of transcription;0.0380865260177837!GO:0006713;glucocorticoid catabolic process;0.0382788026453185!GO:0030911;TPR domain binding;0.0386161089006291!GO:0050789;regulation of biological process;0.0389529057498419!GO:0030119;AP-type membrane coat adaptor complex;0.0390434850632377!GO:0000209;protein polyubiquitination;0.0390434850632377!GO:0007049;cell cycle;0.0396373473639595!GO:0043025;cell soma;0.0406924403438065!GO:0004004;ATP-dependent RNA helicase activity;0.0407763827330377!GO:0016272;prefoldin complex;0.0410830866682817!GO:0042026;protein refolding;0.0411540086522534!GO:0033673;negative regulation of kinase activity;0.0418746084197337!GO:0006469;negative regulation of protein kinase activity;0.0418746084197337!GO:0003725;double-stranded RNA binding;0.0419300706905492!GO:0012501;programmed cell death;0.043148033942621!GO:0031110;regulation of microtubule polymerization or depolymerization;0.043919025261583!GO:0051252;regulation of RNA metabolic process;0.0439559316091927!GO:0000096;sulfur amino acid metabolic process;0.0440546822565725!GO:0006399;tRNA metabolic process;0.0442349890192177!GO:0042552;myelination;0.0449223556433415!GO:0000074;regulation of progression through cell cycle;0.0449392947596301!GO:0006644;phospholipid metabolic process;0.0449392947596301!GO:0004183;carboxypeptidase E activity;0.0449624031071995!GO:0030070;insulin processing;0.0449624031071995!GO:0006364;rRNA processing;0.0472485489251587!GO:0003711;transcription elongation regulator activity;0.0477345377401356!GO:0009066;aspartate family amino acid metabolic process;0.0479876618680409!GO:0006915;apoptosis;0.0479876618680409!GO:0043488;regulation of mRNA stability;0.0479876618680409!GO:0043487;regulation of RNA stability;0.0479876618680409!GO:0019207;kinase regulator activity;0.0495572789643341 | |||
|sample_id=10195 | |sample_id=10195 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=olfactory apparatus | |sample_tissue=olfactory apparatus | ||
|top_motifs=RREB1:3.92473397289;MYFfamily:3.84700927225;REST:3.84482393066;NHLH1,2:3.76334173896;GATA4:3.67568729627;ZFP161:3.38964711716;EGR1..3:3.3851015853;PRDM1:3.3647233962;ZBTB6:3.35743541663;CUX2:3.29296448355;AHR_ARNT_ARNT2:3.29054591054;DBP:3.21211156656;PRRX1,2:3.16461991672;MTE{core}:3.16232754613;PAX6:3.13170185705;MED-1{core}:3.12256929424;HOXA9_MEIS1:2.99841738333;GTF2I:2.83829455178;RFX1:2.83205570776;MTF1:2.80883788681;PAX5:2.76681735933;ATF2:2.76580200957;FOXM1:2.73036005867;KLF4:2.72884497346;OCT4_SOX2{dimer}:2.68002137754;TFAP2B:2.61784185176;MZF1:2.56709109442;NKX3-2:2.54663955474;ZNF384:2.53410534958;HIC1:2.4359612451;POU5F1:2.39616589254;SOX2:2.37897564763;SMAD1..7,9:2.19112574989;SOX5:2.17536686781;PAX4:2.15041939091;BREu{core}:2.1325895835;ARID5B:2.11258350166;RFX2..5_RFXANK_RFXAP:2.10889830204;HOX{A4,D4}:2.07906209132;POU6F1:2.07576344724;CDC5L:2.06019593688;PATZ1:2.04298642114;ALX1:2.03753840509;FOXQ1:1.96358829008;MAZ:1.93312362972;GFI1B:1.92649627323;LMO2:1.90673589224;HMGA1,2:1.8788790327;GCM1,2:1.82817982087;HBP1_HMGB_SSRP1_UBTF:1.79078383442;TGIF1:1.7864771924;IKZF2:1.7198872108;NFIX:1.71064807341;BPTF:1.7051446444;FOXD3:1.67294398315;TFDP1:1.6604586065;RBPJ:1.62304935006;SOX{8,9,10}:1.61868999895;NRF1:1.56914565444;NKX6-1,2:1.55237861315;POU3F1..4:1.53308731824;JUN:1.52228106765;LEF1_TCF7_TCF7L1,2:1.52123549499;FOXP3:1.50631794533;FOXP1:1.48794395893;NANOG:1.44486142815;EP300:1.4352960856;EBF1:1.42732571605;SOX17:1.34113483095;MAFB:1.31008967634;XBP1:1.28050927898;NFIL3:1.26623572313;TEF:1.23675493766;POU1F1:1.19303753387;FOX{F1,F2,J1}:1.18650299512;ONECUT1,2:1.13118597502;NKX2-3_NKX2-5:1.12035973733;ZIC1..3:1.0452047159;HAND1,2:1.02902929459;NR3C1:1.00546271636;GTF2A1,2:0.908963666952;ADNP_IRX_SIX_ZHX:0.903466387335;ZBTB16:0.876828054754;ESRRA:0.851073911025;ZNF423:0.830687543816;MYOD1:0.803722828262;TFAP2{A,C}:0.771013828731;ZNF238:0.768609109237;SP1:0.757108156511;ZNF143:0.690675908614;UFEwm:0.673469641881;TOPORS:0.672877591587;SPZ1:0.658562466745;ZEB1:0.638304716333;GZF1:0.625319154469;SREBF1,2:0.543280887017;PAX1,9:0.518543739004;YY1:0.504031261923;AR:0.493301851325;HMX1:0.4805019978;CRX:0.47324034455;TLX1..3_NFIC{dimer}:0.472768431233;T:0.438705458941;MEF2{A,B,C,D}:0.429575501162;CREB1:0.423645137017;MYBL2:0.354207194839;FOX{D1,D2}:0.34790625307;STAT1,3:0.330713462685;GFI1:0.312300086693;FOXL1:0.233809404755;TLX2:0.23039580734;FOXA2:0.106082932164;ATF5_CREB3:0.0914427817415;IRF7:0.0726542888226;XCPE1{core}:0.0287619746885;VSX1,2:-0.00652322360752;ATF4:-0.0104255448847;FOXO1,3,4:-0.0135206920434;IKZF1:-0.0182860380225;RORA:-0.0399424510156;EVI1:-0.058163640732;TBX4,5:-0.0604240667647;PBX1:-0.0611702772443;FOXN1:-0.0648821416034;PAX2:-0.0858814829499;IRF1,2:-0.0908906113516;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.1268542367;AIRE:-0.144499078359;FOX{I1,J2}:-0.153903780366;LHX3,4:-0.159895755264;HOX{A6,A7,B6,B7}:-0.175067477276;NFY{A,B,C}:-0.216284421324;NFATC1..3:-0.283683024195;SNAI1..3:-0.333734356198;NFE2L2:-0.350976891224;NKX3-1:-0.365261561229;PDX1:-0.386180406098;CDX1,2,4:-0.398398203421;PAX3,7:-0.406947971107;STAT2,4,6:-0.410544375286;DMAP1_NCOR{1,2}_SMARC:-0.41952999704;SPI1:-0.479527366185;PAX8:-0.534587255117;bHLH_family:-0.542549117095;NFE2L1:-0.548366669394;NR1H4:-0.625730281569;NANOG{mouse}:-0.629285789022;CEBPA,B_DDIT3:-0.722582028959;NFE2:-0.731668339344;HNF4A_NR2F1,2:-0.786943183604;PITX1..3:-0.791072718684;ESR1:-0.805028748471;HSF1,2:-0.816911555908;TFAP4:-0.821136783439;ZNF148:-0.841893897425;ATF6:-0.851857685627;SPIB:-0.912690243055;GATA6:-0.932898911291;NR5A1,2:-0.956217483955;NKX2-1,4:-1.00236665221;TEAD1:-1.02310635953;HNF1A:-1.02747038641;TP53:-1.03390186045;ETS1,2:-1.08730175028;TFCP2:-1.09521930444;FOSL2:-1.10689037231;NKX2-2,8:-1.15868389567;TAL1_TCF{3,4,12}:-1.15910525939;BACH2:-1.16596299135;RXR{A,B,G}:-1.17992113641;RUNX1..3:-1.21467362023;FOS_FOS{B,L1}_JUN{B,D}:-1.2694972486;E2F1..5:-1.30914306441;ALX4:-1.34733617511;PPARG:-1.36828193513;NFKB1_REL_RELA:-1.36958422365;ELK1,4_GABP{A,B1}:-1.41164869637;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.41845199615;SRF:-1.41884615267;RXRA_VDR{dimer}:-1.439722407;TBP:-1.52398332198;POU2F1..3:-1.53375314309;GLI1..3:-1.54443836971;MYB:-1.57396750593;HLF:-1.72198173202;HIF1A:-1.79825653057;ELF1,2,4:-1.86462185596;NR6A1:-1.94881233819;STAT5{A,B}:-2.23623233276;HES1:-2.32283173286;HOX{A5,B5}:-2.50536385042;EN1,2:-2.92876358389 | |top_motifs=RREB1:3.92473397289;MYFfamily:3.84700927225;REST:3.84482393066;NHLH1,2:3.76334173896;GATA4:3.67568729627;ZFP161:3.38964711716;EGR1..3:3.3851015853;PRDM1:3.3647233962;ZBTB6:3.35743541663;CUX2:3.29296448355;AHR_ARNT_ARNT2:3.29054591054;DBP:3.21211156656;PRRX1,2:3.16461991672;MTE{core}:3.16232754613;PAX6:3.13170185705;MED-1{core}:3.12256929424;HOXA9_MEIS1:2.99841738333;GTF2I:2.83829455178;RFX1:2.83205570776;MTF1:2.80883788681;PAX5:2.76681735933;ATF2:2.76580200957;FOXM1:2.73036005867;KLF4:2.72884497346;OCT4_SOX2{dimer}:2.68002137754;TFAP2B:2.61784185176;MZF1:2.56709109442;NKX3-2:2.54663955474;ZNF384:2.53410534958;HIC1:2.4359612451;POU5F1:2.39616589254;SOX2:2.37897564763;SMAD1..7,9:2.19112574989;SOX5:2.17536686781;PAX4:2.15041939091;BREu{core}:2.1325895835;ARID5B:2.11258350166;RFX2..5_RFXANK_RFXAP:2.10889830204;HOX{A4,D4}:2.07906209132;POU6F1:2.07576344724;CDC5L:2.06019593688;PATZ1:2.04298642114;ALX1:2.03753840509;FOXQ1:1.96358829008;MAZ:1.93312362972;GFI1B:1.92649627323;LMO2:1.90673589224;HMGA1,2:1.8788790327;GCM1,2:1.82817982087;HBP1_HMGB_SSRP1_UBTF:1.79078383442;TGIF1:1.7864771924;IKZF2:1.7198872108;NFIX:1.71064807341;BPTF:1.7051446444;FOXD3:1.67294398315;TFDP1:1.6604586065;RBPJ:1.62304935006;SOX{8,9,10}:1.61868999895;NRF1:1.56914565444;NKX6-1,2:1.55237861315;POU3F1..4:1.53308731824;JUN:1.52228106765;LEF1_TCF7_TCF7L1,2:1.52123549499;FOXP3:1.50631794533;FOXP1:1.48794395893;NANOG:1.44486142815;EP300:1.4352960856;EBF1:1.42732571605;SOX17:1.34113483095;MAFB:1.31008967634;XBP1:1.28050927898;NFIL3:1.26623572313;TEF:1.23675493766;POU1F1:1.19303753387;FOX{F1,F2,J1}:1.18650299512;ONECUT1,2:1.13118597502;NKX2-3_NKX2-5:1.12035973733;ZIC1..3:1.0452047159;HAND1,2:1.02902929459;NR3C1:1.00546271636;GTF2A1,2:0.908963666952;ADNP_IRX_SIX_ZHX:0.903466387335;ZBTB16:0.876828054754;ESRRA:0.851073911025;ZNF423:0.830687543816;MYOD1:0.803722828262;TFAP2{A,C}:0.771013828731;ZNF238:0.768609109237;SP1:0.757108156511;ZNF143:0.690675908614;UFEwm:0.673469641881;TOPORS:0.672877591587;SPZ1:0.658562466745;ZEB1:0.638304716333;GZF1:0.625319154469;SREBF1,2:0.543280887017;PAX1,9:0.518543739004;YY1:0.504031261923;AR:0.493301851325;HMX1:0.4805019978;CRX:0.47324034455;TLX1..3_NFIC{dimer}:0.472768431233;T:0.438705458941;MEF2{A,B,C,D}:0.429575501162;CREB1:0.423645137017;MYBL2:0.354207194839;FOX{D1,D2}:0.34790625307;STAT1,3:0.330713462685;GFI1:0.312300086693;FOXL1:0.233809404755;TLX2:0.23039580734;FOXA2:0.106082932164;ATF5_CREB3:0.0914427817415;IRF7:0.0726542888226;XCPE1{core}:0.0287619746885;VSX1,2:-0.00652322360752;ATF4:-0.0104255448847;FOXO1,3,4:-0.0135206920434;IKZF1:-0.0182860380225;RORA:-0.0399424510156;EVI1:-0.058163640732;TBX4,5:-0.0604240667647;PBX1:-0.0611702772443;FOXN1:-0.0648821416034;PAX2:-0.0858814829499;IRF1,2:-0.0908906113516;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.1268542367;AIRE:-0.144499078359;FOX{I1,J2}:-0.153903780366;LHX3,4:-0.159895755264;HOX{A6,A7,B6,B7}:-0.175067477276;NFY{A,B,C}:-0.216284421324;NFATC1..3:-0.283683024195;SNAI1..3:-0.333734356198;NFE2L2:-0.350976891224;NKX3-1:-0.365261561229;PDX1:-0.386180406098;CDX1,2,4:-0.398398203421;PAX3,7:-0.406947971107;STAT2,4,6:-0.410544375286;DMAP1_NCOR{1,2}_SMARC:-0.41952999704;SPI1:-0.479527366185;PAX8:-0.534587255117;bHLH_family:-0.542549117095;NFE2L1:-0.548366669394;NR1H4:-0.625730281569;NANOG{mouse}:-0.629285789022;CEBPA,B_DDIT3:-0.722582028959;NFE2:-0.731668339344;HNF4A_NR2F1,2:-0.786943183604;PITX1..3:-0.791072718684;ESR1:-0.805028748471;HSF1,2:-0.816911555908;TFAP4:-0.821136783439;ZNF148:-0.841893897425;ATF6:-0.851857685627;SPIB:-0.912690243055;GATA6:-0.932898911291;NR5A1,2:-0.956217483955;NKX2-1,4:-1.00236665221;TEAD1:-1.02310635953;HNF1A:-1.02747038641;TP53:-1.03390186045;ETS1,2:-1.08730175028;TFCP2:-1.09521930444;FOSL2:-1.10689037231;NKX2-2,8:-1.15868389567;TAL1_TCF{3,4,12}:-1.15910525939;BACH2:-1.16596299135;RXR{A,B,G}:-1.17992113641;RUNX1..3:-1.21467362023;FOS_FOS{B,L1}_JUN{B,D}:-1.2694972486;E2F1..5:-1.30914306441;ALX4:-1.34733617511;PPARG:-1.36828193513;NFKB1_REL_RELA:-1.36958422365;ELK1,4_GABP{A,B1}:-1.41164869637;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.41845199615;SRF:-1.41884615267;RXRA_VDR{dimer}:-1.439722407;TBP:-1.52398332198;POU2F1..3:-1.53375314309;GLI1..3:-1.54443836971;MYB:-1.57396750593;HLF:-1.72198173202;HIF1A:-1.79825653057;ELF1,2,4:-1.86462185596;NR6A1:-1.94881233819;STAT5{A,B}:-2.23623233276;HES1:-2.32283173286;HOX{A5,B5}:-2.50536385042;EN1,2:-2.92876358389 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10195-103E6;search_select_hide=table117:FF:10195-103E6 | |||
}} | }} | ||
Latest revision as of 12:26, 3 June 2020
| Name: | olfactory region, adult |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12611 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12611
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12611
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0512 |
| 10 | 10 | 0.0448 |
| 100 | 100 | 0.309 |
| 101 | 101 | 0.416 |
| 102 | 102 | 0.751 |
| 103 | 103 | 0.209 |
| 104 | 104 | 0.156 |
| 105 | 105 | 0.117 |
| 106 | 106 | 0.0453 |
| 107 | 107 | 0.13 |
| 108 | 108 | 0.905 |
| 109 | 109 | 0.00273 |
| 11 | 11 | 0.0127 |
| 110 | 110 | 0.0495 |
| 111 | 111 | 0.152 |
| 112 | 112 | 0.51 |
| 113 | 113 | 0.395 |
| 114 | 114 | 0.212 |
| 115 | 115 | 0.918 |
| 116 | 116 | 0.233 |
| 117 | 117 | 0.00954 |
| 118 | 118 | 0.151 |
| 119 | 119 | 0.227 |
| 12 | 12 | 0.472 |
| 120 | 120 | 0.253 |
| 121 | 121 | 0.291 |
| 122 | 122 | 0.922 |
| 123 | 123 | 0.788 |
| 124 | 124 | 0.0747 |
| 125 | 125 | 0.2 |
| 126 | 126 | 0.0223 |
| 127 | 127 | 0.598 |
| 128 | 128 | 0.241 |
| 129 | 129 | 0.574 |
| 13 | 13 | 7.90152e-4 |
| 130 | 130 | 0.16 |
| 131 | 131 | 0.121 |
| 132 | 132 | 0.59 |
| 133 | 133 | 0.0329 |
| 134 | 134 | 0.511 |
| 135 | 135 | 0.172 |
| 136 | 136 | 0.002 |
| 137 | 137 | 0.751 |
| 138 | 138 | 0.876 |
| 139 | 139 | 0.19 |
| 14 | 14 | 0.785 |
| 140 | 140 | 0.653 |
| 141 | 141 | 0.649 |
| 142 | 142 | 0.952 |
| 143 | 143 | 0.0683 |
| 144 | 144 | 0.949 |
| 145 | 145 | 0.103 |
| 146 | 146 | 0.415 |
| 147 | 147 | 0.767 |
| 148 | 148 | 0.299 |
| 149 | 149 | 0.336 |
| 15 | 15 | 0.0598 |
| 150 | 150 | 0.142 |
| 151 | 151 | 0.617 |
| 152 | 152 | 0.0765 |
| 153 | 153 | 0.909 |
| 154 | 154 | 0.46 |
| 155 | 155 | 0.748 |
| 156 | 156 | 0.332 |
| 157 | 157 | 0.437 |
| 158 | 158 | 0.206 |
| 159 | 159 | 0.0126 |
| 16 | 16 | 0.0537 |
| 160 | 160 | 0.285 |
| 161 | 161 | 0.286 |
| 162 | 162 | 0.7 |
| 163 | 163 | 0.745 |
| 164 | 164 | 0.0394 |
| 165 | 165 | 0.0379 |
| 166 | 166 | 0.914 |
| 167 | 167 | 0.821 |
| 168 | 168 | 0.542 |
| 169 | 169 | 0.0107 |
| 17 | 17 | 0.154 |
| 18 | 18 | 0.171 |
| 19 | 19 | 0.186 |
| 2 | 2 | 0.95 |
| 20 | 20 | 0.106 |
| 21 | 21 | 0.0947 |
| 22 | 22 | 0.214 |
| 23 | 23 | 0.425 |
| 24 | 24 | 0.0356 |
| 25 | 25 | 0.44 |
| 26 | 26 | 1.23383e-4 |
| 27 | 27 | 0.919 |
| 28 | 28 | 0.639 |
| 29 | 29 | 0.00978 |
| 3 | 3 | 0.0333 |
| 30 | 30 | 0.805 |
| 31 | 31 | 0.963 |
| 32 | 32 | 0.0565 |
| 33 | 33 | 0.0418 |
| 34 | 34 | 0.648 |
| 35 | 35 | 0.61 |
| 36 | 36 | 0.137 |
| 37 | 37 | 0.027 |
| 38 | 38 | 0.326 |
| 39 | 39 | 0.204 |
| 4 | 4 | 0.744 |
| 40 | 40 | 0.0261 |
| 41 | 41 | 0.337 |
| 42 | 42 | 0.18 |
| 43 | 43 | 0.105 |
| 44 | 44 | 0.317 |
| 45 | 45 | 0.686 |
| 46 | 46 | 0.083 |
| 47 | 47 | 0.0676 |
| 48 | 48 | 0.0555 |
| 49 | 49 | 0.194 |
| 5 | 5 | 0.534 |
| 50 | 50 | 0.293 |
| 51 | 51 | 0.497 |
| 52 | 52 | 0.586 |
| 53 | 53 | 0.909 |
| 54 | 54 | 0.414 |
| 55 | 55 | 0.613 |
| 56 | 56 | 0.451 |
| 57 | 57 | 0.324 |
| 58 | 58 | 0.307 |
| 59 | 59 | 0.108 |
| 6 | 6 | 0.778 |
| 60 | 60 | 0.0657 |
| 61 | 61 | 0.0605 |
| 62 | 62 | 0.197 |
| 63 | 63 | 0.174 |
| 64 | 64 | 0.217 |
| 65 | 65 | 0.268 |
| 66 | 66 | 0.114 |
| 67 | 67 | 0.321 |
| 68 | 68 | 0.177 |
| 69 | 69 | 0.529 |
| 7 | 7 | 0.0439 |
| 70 | 70 | 0.0497 |
| 71 | 71 | 0.00961 |
| 72 | 72 | 0.345 |
| 73 | 73 | 0.0228 |
| 74 | 74 | 0.85 |
| 75 | 75 | 0.0287 |
| 76 | 76 | 0.398 |
| 77 | 77 | 0.2 |
| 78 | 78 | 0.00159 |
| 79 | 79 | 0.482 |
| 8 | 8 | 0.0756 |
| 80 | 80 | 0.545 |
| 81 | 81 | 0.722 |
| 82 | 82 | 0.604 |
| 83 | 83 | 0.0384 |
| 84 | 84 | 0.546 |
| 85 | 85 | 0.264 |
| 86 | 86 | 0.167 |
| 87 | 87 | 1.31517e-4 |
| 88 | 88 | 0.839 |
| 89 | 89 | 0.616 |
| 9 | 9 | 0.378 |
| 90 | 90 | 0.112 |
| 91 | 91 | 0.781 |
| 92 | 92 | 0.604 |
| 93 | 93 | 0.951 |
| 94 | 94 | 0.156 |
| 95 | 95 | 0.0091 |
| 96 | 96 | 0.974 |
| 97 | 97 | 0.682 |
| 98 | 98 | 0.307 |
| 99 | 99 | 0.66 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12611
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0003112 (olfactory region)
0000033 (head)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0011158 (primary subdivision of skull)
0011159 (primary subdivision of cranial skeletal system)
0010317 (germ layer / neural crest derived structure)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0003128 (cranium)
0011137 (axial skeletal system)
0001703 (neurocranium)
0002241 (chondrocranium)
0010323 (cranial skeletal system)
0003129 (skull)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010195 (human olfactory region - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)
