FF:10183-103D3: Difference between revisions

Latest revision as of 12:25, 3 June 2020

Name:	medial temporal gyrus - adult, donor10196
Species:	Human (Homo sapiens)
Library ID:	CNhs13809
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	medial temporal gyrus
dev stage	NA
sex	female
age	60
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005572

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13809		CAGE		DRX008684		DRR009556

Accession ID Hg19

Library id		BAM		CTSS
CNhs13809		DRZ000981		DRZ002366

Accession ID Hg38

Library id		BAM		CTSS
CNhs13809		DRZ012331		DRZ013716

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.413
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.481
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.05
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.31
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.05
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.135
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.581
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.05
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.05
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.135
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.461
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.877
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.135
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.00774
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.165
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.84
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.05
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0153
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.0948
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.176
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0948
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.733
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0878
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.452
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.581
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.116
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.05
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.566
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.657
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.668
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.05
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0848
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.751
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	3.669773e-5
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.513
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.334
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.549
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.982
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	1.121
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0948
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.0948
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.0948
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.769
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.37
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.173
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.391
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.433
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.05
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13809

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0115
MA0003.1	MA0003.1	0.303
MA0004.1	MA0004.1	0.239
MA0006.1	MA0006.1	0.253
MA0007.1	MA0007.1	0.225
MA0009.1	MA0009.1	0.208
MA0014.1	MA0014.1	0.574
MA0017.1	MA0017.1	0.00426
MA0018.2	MA0018.2	0.428
MA0019.1	MA0019.1	0.848
MA0024.1	MA0024.1	0.936
MA0025.1	MA0025.1	0.841
MA0027.1	MA0027.1	0.585
MA0028.1	MA0028.1	0.0417
MA0029.1	MA0029.1	0.0113
MA0030.1	MA0030.1	0.567
MA0031.1	MA0031.1	0.247
MA0035.2	MA0035.2	0.00819
MA0038.1	MA0038.1	0.745
MA0039.2	MA0039.2	0.0312
MA0040.1	MA0040.1	0.98
MA0041.1	MA0041.1	0.502
MA0042.1	MA0042.1	0.766
MA0043.1	MA0043.1	0.406
MA0046.1	MA0046.1	0.0012
MA0047.2	MA0047.2	0.0173
MA0048.1	MA0048.1	0.0996
MA0050.1	MA0050.1	8.25096e-4
MA0051.1	MA0051.1	0.0525
MA0052.1	MA0052.1	0.167
MA0055.1	MA0055.1	2.60387e-4
MA0057.1	MA0057.1	0.842
MA0058.1	MA0058.1	0.176
MA0059.1	MA0059.1	0.104
MA0060.1	MA0060.1	0.252
MA0061.1	MA0061.1	0.00472
MA0062.2	MA0062.2	4.80239e-4
MA0065.2	MA0065.2	8.73925e-4
MA0066.1	MA0066.1	0.0356
MA0067.1	MA0067.1	0.748
MA0068.1	MA0068.1	0.792
MA0069.1	MA0069.1	0.482
MA0070.1	MA0070.1	0.38
MA0071.1	MA0071.1	0.0226
MA0072.1	MA0072.1	0.215
MA0073.1	MA0073.1	0.373
MA0074.1	MA0074.1	0.304
MA0076.1	MA0076.1	0.0791
MA0077.1	MA0077.1	0.601
MA0078.1	MA0078.1	0.903
MA0079.2	MA0079.2	0.86
MA0080.2	MA0080.2	3.61598e-9
MA0081.1	MA0081.1	0.015
MA0083.1	MA0083.1	0.00628
MA0084.1	MA0084.1	0.897
MA0087.1	MA0087.1	0.728
MA0088.1	MA0088.1	0.148
MA0090.1	MA0090.1	0.171
MA0091.1	MA0091.1	0.689
MA0092.1	MA0092.1	0.291
MA0093.1	MA0093.1	0.239
MA0099.2	MA0099.2	7.5924e-21
MA0100.1	MA0100.1	0.473
MA0101.1	MA0101.1	3.9208e-4
MA0102.2	MA0102.2	0.0708
MA0103.1	MA0103.1	0.366
MA0104.2	MA0104.2	0.509
MA0105.1	MA0105.1	0.00774
MA0106.1	MA0106.1	0.0201
MA0107.1	MA0107.1	8.18319e-4
MA0108.2	MA0108.2	0.0391
MA0111.1	MA0111.1	0.563
MA0112.2	MA0112.2	0.0012
MA0113.1	MA0113.1	0.357
MA0114.1	MA0114.1	0.00224
MA0115.1	MA0115.1	0.789
MA0116.1	MA0116.1	0.0167
MA0117.1	MA0117.1	0.989
MA0119.1	MA0119.1	0.0421
MA0122.1	MA0122.1	0.484
MA0124.1	MA0124.1	0.3
MA0125.1	MA0125.1	0.48
MA0131.1	MA0131.1	0.756
MA0135.1	MA0135.1	0.0247
MA0136.1	MA0136.1	1.75475e-13
MA0137.2	MA0137.2	0.604
MA0138.2	MA0138.2	0.109
MA0139.1	MA0139.1	0.55
MA0140.1	MA0140.1	4.4387e-4
MA0141.1	MA0141.1	0.0155
MA0142.1	MA0142.1	0.968
MA0143.1	MA0143.1	0.797
MA0144.1	MA0144.1	0.406
MA0145.1	MA0145.1	0.139
MA0146.1	MA0146.1	0.00443
MA0147.1	MA0147.1	0.408
MA0148.1	MA0148.1	0.0169
MA0149.1	MA0149.1	0.02
MA0150.1	MA0150.1	5.19931e-5
MA0152.1	MA0152.1	0.629
MA0153.1	MA0153.1	0.0662
MA0154.1	MA0154.1	0.0777
MA0155.1	MA0155.1	0.631
MA0156.1	MA0156.1	4.49125e-10
MA0157.1	MA0157.1	0.298
MA0159.1	MA0159.1	0.0126
MA0160.1	MA0160.1	0.0103
MA0162.1	MA0162.1	0.148
MA0163.1	MA0163.1	5.10499e-4
MA0164.1	MA0164.1	0.921
MA0258.1	MA0258.1	0.00586
MA0259.1	MA0259.1	0.913

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13809

Novel motif	Logo	P-value
1	1	0.096
10	10	0.0609
100	100	0.3
101	101	0.562
102	102	0.837
103	103	0.455
104	104	0.103
105	105	0.0279
106	106	0.0519
107	107	0.117
108	108	0.712
109	109	0.00341
11	11	0.0185
110	110	0.0579
111	111	0.336
112	112	0.913
113	113	0.937
114	114	0.438
115	115	0.196
116	116	0.215
117	117	0.0103
118	118	0.149
119	119	0.183
12	12	0.326
120	120	0.513
121	121	0.252
122	122	0.806
123	123	0.33
124	124	0.0986
125	125	0.223
126	126	0.0388
127	127	0.43
128	128	0.205
129	129	0.953
13	13	1.53987e-4
130	130	0.089
131	131	0.151
132	132	0.802
133	133	0.00894
134	134	0.993
135	135	0.171
136	136	0.00228
137	137	0.861
138	138	0.701
139	139	0.225
14	14	0.538
140	140	0.549
141	141	0.896
142	142	0.712
143	143	0.0644
144	144	0.988
145	145	0.113
146	146	0.242
147	147	0.49
148	148	0.497
149	149	0.581
15	15	0.0681
150	150	0.157
151	151	0.563
152	152	0.0675
153	153	0.767
154	154	0.468
155	155	0.688
156	156	0.594
157	157	0.351
158	158	0.716
159	159	0.162
16	16	0.149
160	160	0.333
161	161	0.179
162	162	0.668
163	163	0.912
164	164	0.0475
165	165	0.0648
166	166	0.666
167	167	0.903
168	168	0.562
169	169	0.00891
17	17	0.152
18	18	0.454
19	19	0.192
2	2	0.822
20	20	0.109
21	21	0.0801
22	22	0.171
23	23	0.415
24	24	0.0449
25	25	0.448
26	26	1.07106e-4
27	27	0.793
28	28	0.543
29	29	0.0252
3	3	0.0381
30	30	0.945
31	31	0.939
32	32	0.0815
33	33	0.0605
34	34	0.517
35	35	0.84
36	36	0.172
37	37	0.0406
38	38	0.289
39	39	0.256
4	4	0.723
40	40	0.0207
41	41	0.296
42	42	0.187
43	43	0.0976
44	44	0.996
45	45	0.579
46	46	0.171
47	47	0.125
48	48	0.0646
49	49	0.101
5	5	0.631
50	50	0.169
51	51	0.563
52	52	0.45
53	53	0.617
54	54	0.42
55	55	0.565
56	56	0.437
57	57	0.293
58	58	0.334
59	59	0.132
6	6	0.896
60	60	0.0528
61	61	0.0577
62	62	0.272
63	63	0.121
64	64	0.271
65	65	0.275
66	66	0.062
67	67	0.412
68	68	0.171
69	69	0.415
7	7	0.0272
70	70	0.152
71	71	0.0137
72	72	0.439
73	73	0.025
74	74	0.861
75	75	0.0419
76	76	0.391
77	77	0.154
78	78	0.0026
79	79	0.863
8	8	0.13
80	80	0.402
81	81	0.914
82	82	0.893
83	83	0.0071
84	84	0.374
85	85	0.287
86	86	0.221
87	87	0.00144
88	88	0.818
89	89	0.863
9	9	0.362
90	90	0.239
91	91	0.717
92	92	0.786
93	93	0.776
94	94	0.272
95	95	0.0149
96	96	0.985
97	97	0.582
98	98	0.303
99	99	0.676

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13809

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010150 human medial temporal gyrus - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001871 (temporal lobe)
0000200 (gyrus)
0002771 (middle temporal gyrus)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010150 (human medial temporal gyrus - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0000955,UBERON:0001871,UBERON:0000200,UBERON:0000483,UBERON:0000956,UBERON:0000033,UBERON:0000479,UBERON:0002346,UBERON:0000064,UBERON:0000073,UBERON:0004121,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0002020,UBERON:0002791,UBERON:0003528,UBERON:0000481,UBERON:0000467,UBERON:0002616,UBERON:0002619,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0002780,UBERON:0006598,UBERON:0002532,UBERON:0001017,UBERON:0002771,UBERON:0001016,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0005743,UBERON:0001950,UBERON:0003075,UBERON:0003056,UBERON:0001049,UBERON:0006238,UBERON:0006601,UBERON:0005068,UBERON:0006241,UBERON:0003080,UBERON:0006240,UBERON:0007284,UBERON:0007135
+|DRA_sample_Accession=CAGE@SAMD00005572
+|accession_numbers=CAGE;DRX008684;DRR009556;DRZ000981;DRZ002366;DRZ012331;DRZ013716
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001871,UBERON:0000200,UBERON:0002771,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010150
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.48!297.87!TSC22D4;;chr9:77112244..77112262,+!p1@RORB!2.37!258.82!RORB;;chr21:34442439..34442455,+!p1@OLIG1!2.37!235.63!OLIG1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.12!131.06!PEG3;;chr9:114287433..114287513,+!p1@ZNF483!2.10!309.95!ZNF483;;chr2:162272785..162272836,+!p1@TBR1!2.02!102.99!TBR1;;chr17:53342311..53342400,+!p1@HLF!2.00!113.73!HLF;;chr2:2334997..2335053,-!p1@MYT1L!1.97!92.86!MYT1L;;chr4:57547454..57547469,-!p1@HOPX!1.93!84.56!HOPX;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.91!80.90!SMARCE1;;chr5:88178983..88179012,-!p1@MEF2C!1.89!552.41!MEF2C;;chrX:25034067..25034088,-!p1@ARX!1.83!66.87!ARX;;chr3:181429704..181429722,+!p1@SOX2!1.82!64.43!SOX2;;chr14:29235961..29236008,+!p1@FOXG1!1.81!64.19!FOXG1;;chr4:81118647..81118666,+!p1@PRDM8!1.79!79.93!PRDM8;;chr15:80735246..80735321,+!p3@ARNT2!1.79!61.26!ARNT2;;chr15:80733570..80733659,+!p2@ARNT2!1.78!59.91!ARNT2;;chr10:64134120..64134183,+!p1@ZNF365!1.77!68.70!ZNF365;;chr7:31380292..31380351,-!p1@NEUROD6!1.76!56.86!NEUROD6;;chr2:95963052..95963106,+!p1@KCNIP3!1.74!53.69!KCNIP3;;chr17:37764128..37764258,-!p1@NEUROD2!1.70!48.81!NEUROD2;;chr8:40755333..40755352,-!p1@ZMAT4!1.69!47.96!ZMAT4;;chr2:60781201..60781258,-!p3@BCL11A!1.68!46.74!BCL11A;;chr18:53070846..53070902,-!p6@TCF4!1.68!46.37!TCF4;;chr21:34442540..34442560,+!p2@OLIG1!1.67!45.76!OLIG1;;chr2:166326200..166326216,+!p1@CSRNP3!1.66!64.06!CSRNP3;;chr5:88179017..88179046,-!p2@MEF2C!1.63!160.22!MEF2C;;chr11:61520075..61520136,+!p1@C11orf9!1.63!85.05!C11orf9;;chrX:85969626..85969664,+!p1@DACH2!1.63!41.37!DACH2;;chr2:145277882..145277967,-!p3@ZEB2!1.61!67.36!ZEB2;;chr10:48355030..48355090,+!p1@ZNF488!1.61!50.76!ZNF488;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.60!38.68!POU3F3;;chr22:38380543..38380569,-!p1@SOX10!1.59!37.58!SOX10;;chr9:126774018..126774055,+!p1@LHX2!1.58!36.73!LHX2;;chr14:29234581..29234601,+!p2@FOXG1!1.57!35.75!FOXG1;;chr8:53322304..53322340,-!p1@ST18!1.56!34.90!ST18;;chr10:119302232..119302265,+!p1@EMX2!1.54!33.68!EMX2;;chr4:57522166..57522260,-!p2@HOPX!1.53!38.07!HOPX;;chr21:34398234..34398250,+!p1@OLIG2!1.52!31.85!OLIG2;;chr7:63505799..63505904,+!p1@ZNF727!1.51!31.48!ZNF727;;chr12:106976678..106976708,+!p2@RFX4!1.50!30.87!RFX4;;chr19:13135582..13135600,+!p3@NFIX!1.50!30.26!NFIX;;chr3:181429741..181429767,+!p2@SOX2!1.47!28.19!SOX2;;chr11:8102846..8102892,+!p1@TUB!1.46!38.44!TUB;;chr14:58798013..58798071,+!p2@ARID4A!1.45!27.33!ARID4A;;chr9:77112225..77112238,+!p2@RORB!1.43!25.99!RORB;;chr8:53322347..53322378,-!p2@ST18!1.43!25.87!ST18;;chr12:106976774..106976788,+!p1@RFX4!1.43!25.75!RFX4;;chr3:141105705..141105770,+!p4@ZBTB38!1.40!29.41!ZBTB38;;chr11:113930425..113930471,+!p1@ZBTB16!1.39!33.44!ZBTB16;;chr15:80696703..80696754,+!p1@ARNT2!1.39!31.12!ARNT2;;chr11:125034640..125034655,+!p1@PKNOX2!1.38!23.06!PKNOX2;;chr2:162272889..162272915,+!p2@TBR1!1.38!23.06!TBR1;;chr19:46801639..46801699,+!p1@HIF3A!1.38!22.94!HIF3A;;chr19:57352109..57352153,-!p2@ZIM2!1.37!22.45!ZIM2;;chr19:38085768..38085821,+!p1@ZNF540!1.36!32.70!ZNF540;;chr5:92920256..92920282,+!p7@NR2F1!1.35!25.99!NR2F1;;chr19:13135386..13135435,+!p4@NFIX!1.35!21.60!NFIX;;chr12:26277817..26277863,-!p2@BHLHE41!1.34!27.82!BHLHE41;;chr18:53070913..53070933,-!p16@TCF4!1.31!19.65!TCF4;;chr14:29236269..29236285,+!p3@FOXG1!1.31!19.28!FOXG1;;chr11:31832658..31832681,-!p1@PAX6!1.29!18.55!PAX6;;chr9:126773880..126773895,+!p2@LHX2!1.29!18.55!LHX2;;chr3:24536253..24536328,-!p1@THRB!1.28!34.05!THRB;;chr12:26277956..26277980,-!p1@BHLHE41!1.27!61.75!BHLHE41;;chr17:7492684..7492778,-!p2@SOX15!1.27!37.22!SOX15;;chr2:95963120..95963136,+!p2@KCNIP3!1.27!17.69!KCNIP3;;chr6:15401104..15401166,+!p5@JARID2!1.27!17.69!JARID2;;chr1:151032860..151032918,+!p1@MLLT11!1.26!201.22!MLLT11;;chr15:31658288..31658338,+!p4@KLF13!1.26!17.21!KLF13;;chr14:33403881..33403924,+!p1@NPAS3!1.26!17.08!NPAS3;;chr10:134599649..134599653,-!p1@NKX6-2!1.24!16.47!NKX6-2;;chr3:141105235..141105307,+!p7@ZBTB38!1.24!16.47!ZBTB38;;chr1:214161272..214161322,+!p1@PROX1!1.23!22.33!PROX1;;chr19:46800289..46800327,+!p2@HIF3A!1.23!15.99!HIF3A;;chr22:41763452..41763466,+!p2@TEF!1.23!15.99!TEF;;chr2:162272716..162272753,+!p3@TBR1!1.22!15.74!TBR1;;chr4:57522598..57522664,-!p3@HOPX!1.21!15.13!HOPX;;chr10:38265517..38265591,-!p1@ZNF25!1.18!54.91!ZNF25;;chr19:38720294..38720348,-!p1@DPF1!1.18!17.69!DPF1;;chr2:192015750..192015793,-!p2@STAT4!1.17!18.43!STAT4;;chr6:126112039..126112062,+!p8@NCOA7!1.17!16.47!NCOA7;;chr16:67198633..67198671,+!p1@HSF4!1.17!13.79!HSF4;;chr10:64133862..64133884,+!p4@ZNF365!1.17!13.67!ZNF365;;chr2:60780753..60780800,-!p1@BCL11A!1.13!61.50!BCL11A;;chr1:151032922..151032951,+!p2@MLLT11!1.13!20.74!MLLT11;;chr12:103351444..103351461,+!p1@ASCL1!1.13!12.57!ASCL1;;chr2:166428839..166428859,+!p2@CSRNP3!1.13!12.45!CSRNP3;;chr19:13136241..13136258,+!p7@NFIX!1.12!16.47!NFIX;;chr10:31610110..31610159,+!p2@ZEB1!1.12!12.20!ZEB1;;chr10:64134045..64134083,+!p3@ZNF365!1.12!12.08!ZNF365;;chr8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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000200;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001871;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002771;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13809.10183-103D3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13809.10183-103D3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13809.10183-103D3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13809.10183-103D3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13809.10183-103D3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10183-103D3
 |is_a=EFO:0002091;;FF:0010150
 |is_obsolete=
+|library_id=CNhs13809
+|library_id_phase_based=2:CNhs13809
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10183
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10183
 |name=medial temporal gyrus - adult, donor10196
 |namespace=FANTOM5
@@ Line 45: / Line 63: @@
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 |rna_box=103
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@@ Line 58: / Line 79: @@
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+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 79: / Line 101: @@
 |top_motifs=FOXM1:5.51424443443;HOXA9_MEIS1:5.34280220228;ARID5B:4.47414425172;DBP:4.1739825135;REST:4.13472369817;MYFfamily:3.97974172515;AHR_ARNT_ARNT2:3.76630675728;PAX6:3.74281085355;CUX2:3.67843961945;PRDM1:3.54877475848;ZBTB6:3.52755641085;NKX6-1,2:3.4034209993;TEF:3.39086709789;NHLH1,2:3.34408489318;OCT4_SOX2{dimer}:3.29095699161;KLF4:3.23854804219;FOXD3:3.14923827564;NKX3-2:3.13907444958;MTF1:3.07437704735;GATA4:3.07307164002;EGR1..3:3.06833114108;PRRX1,2:3.03950034944;ZFP161:2.96291387423;MTE{core}:2.93862482054;MED-1{core}:2.76884541731;CDC5L:2.74121746743;ALX1:2.70818697993;UFEwm:2.69180673376;ATF2:2.69046139806;RFX2..5_RFXANK_RFXAP:2.59854357341;ZNF384:2.58799252168;POU3F1..4:2.57320660251;GTF2I:2.56147507135;HMGA1,2:2.55976267852;RFX1:2.55003739184;POU6F1:2.48931185853;SMAD1..7,9:2.4712490441;POU5F1:2.46686346534;PAX5:2.45722106274;IKZF2:2.39987802973;MZF1:2.36460089841;PAX4:2.36093845944;RREB1:2.34033037128;TFAP2B:2.26334352547;SOX2:2.20032342854;GFI1B:2.16856782358;HIC1:2.09260851003;NFIX:2.06593229806;LMO2:1.98647832158;HOX{A4,D4}:1.94583391733;FOXP3:1.88326613153;JUN:1.87860345508;SOX5:1.83668667856;BREu{core}:1.81074219984;HAND1,2:1.76044974126;MAFB:1.73920097014;ZBTB16:1.69555646373;PATZ1:1.67359937679;NRF1:1.64779589161;SOX17:1.53287011467;ONECUT1,2:1.51458908094;EBF1:1.39745188744;TGIF1:1.39512452038;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.38452690517;HMX1:1.3767455003;XBP1:1.37416799331;NFIL3:1.32129016871;GCM1,2:1.29637837869;STAT1,3:1.29083216667;T:1.28594797891;NKX2-2,8:1.27390184799;BPTF:1.23446687195;ZIC1..3:1.22364022753;TFDP1:1.19658702015;MAZ:1.19055928734;GZF1:1.18888446722;YY1:1.15075927539;MYOD1:1.14649195115;EVI1:1.14334595224;NFE2L1:1.11841790643;TLX2:1.10029015458;RBPJ:1.09452152073;LEF1_TCF7_TCF7L1,2:1.07921478812;FOX{F1,F2,J1}:1.05444593489;SOX{8,9,10}:1.03967255729;NKX3-1:1.00768966979;CRX:1.00064517544;ZNF238:0.887557743579;ESRRA:0.873208640606;ZNF143:0.785832661895;NKX2-3_NKX2-5:0.78440332069;ZEB1:0.75698041504;ZNF423:0.753016789469;FOXL1:0.729947209729;HBP1_HMGB_SSRP1_UBTF:0.687514574229;NR3C1:0.675374244258;PAX1,9:0.613725703117;AIRE:0.603976724006;CREB1:0.589248402011;PBX1:0.556799456528;SPZ1:0.533140919159;GTF2A1,2:0.509499372798;RORA:0.468977080913;FOXQ1:0.448999087579;TBX4,5:0.441313743072;EP300:0.427306005838;STAT2,4,6:0.399143436764;IKZF1:0.369082603048;SREBF1,2:0.340969648179;PAX8:0.334142627226;ATF4:0.319661161899;POU1F1:0.271162029508;ATF5_CREB3:0.213434385641;FOXN1:0.187047191706;NANOG:0.16300115569;MEF2{A,B,C,D}:0.145957749218;AR:0.144381668741;GFI1:0.125705140775;NR1H4:0.119676762746;SP1:0.0809685360476;IRF7:0.0787510667466;TFAP2{A,C}:0.0359247842582;HSF1,2:-0.0330787378747;CDX1,2,4:-0.039474465966;LHX3,4:-0.0479093243213;ADNP_IRX_SIX_ZHX:-0.0491409770497;SNAI1..3:-0.0643133887619;TLX1..3_NFIC{dimer}:-0.0779719961373;ALX4:-0.108575492665;NANOG{mouse}:-0.114440883598;IRF1,2:-0.136252828272;FOX{D1,D2}:-0.138173751098;PAX2:-0.141033870279;RXRA_VDR{dimer}:-0.257379735844;PDX1:-0.306457862673;MYBL2:-0.307596127765;TOPORS:-0.366659291663;DMAP1_NCOR{1,2}_SMARC:-0.390771561647;FOX{I1,J2}:-0.390876984921;bHLH_family:-0.44316299718;CEBPA,B_DDIT3:-0.444373690102;FOXP1:-0.452222193786;PAX3,7:-0.503464285861;FOXA2:-0.526388435967;SPI1:-0.538866050142;XCPE1{core}:-0.571055166609;NFE2L2:-0.572024744094;NFATC1..3:-0.577347640474;NFY{A,B,C}:-0.601377713906;ESR1:-0.704597777909;NR5A1,2:-0.711223902134;HNF4A_NR2F1,2:-0.716112765231;TAL1_TCF{3,4,12}:-0.727509105721;SPIB:-0.752625614582;NFE2:-0.754406011729;HOX{A6,A7,B6,B7}:-0.76866208336;RXR{A,B,G}:-0.862819672284;POU2F1..3:-0.935721236675;FOXO1,3,4:-0.941849235117;ATF6:-0.96887311881;NKX2-1,4:-0.982269438014;HIF1A:-0.991458842785;BACH2:-1.03718628784;HNF1A:-1.06654407059;GATA6:-1.07045738601;VSX1,2:-1.12867985037;ETS1,2:-1.17035630765;TFAP4:-1.18683586399;FOSL2:-1.21161488543;TFCP2:-1.23150361806;RUNX1..3:-1.24169495842;ZNF148:-1.26699651884;E2F1..5:-1.2683220059;GLI1..3:-1.30337625649;FOS_FOS{B,L1}_JUN{B,D}:-1.3084294833;TP53:-1.31468600402;NFKB1_REL_RELA:-1.36385572093;PITX1..3:-1.36955517989;ELK1,4_GABP{A,B1}:-1.37314340812;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.4480738356;TEAD1:-1.559560005;TBP:-1.58505462415;MYB:-1.72390396371;ELF1,2,4:-1.78405140356;HLF:-1.79587184448;SRF:-1.93009358503;HES1:-2.05482480161;EN1,2:-2.08028016456;NR6A1:-2.13916998473;PPARG:-2.50466615714;HOX{A5,B5}:-2.5765994926;STAT5{A,B}:-2.71373745166
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10183-103D3;search_select_hide=table117:FF:10183-103D3
 }}

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FF:10183-103D3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:25, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0