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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005357
|DRA_sample_Accession=CAGE@SAMD00005357
|accession_numbers=CAGE;DRX008691;DRR009563;DRZ000988;DRZ002373
|HumanCAGEScanFiles=NCig10034;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/occipital%2520cortex%252c%2520adult%252c%2520donor10252.NCig10034.10163-103B1.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/occipital%2520cortex%252c%2520adult%252c%2520donor10252.NCig10034.10163-103B1.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/occipital%2520cortex%252c%2520adult%252c%2520donor10252.NCig10034.10163-103B1.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/occipital%2520cortex%252c%2520adult%252c%2520donor10252.NCig10034.10163-103B1.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008691;DRR009563;DRZ000988;DRZ002373;DRZ012338;DRZ013723
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002021,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002021,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
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|def=
|def=
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.52!333.32!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.32!207.68!OLIG1;;chr9:77112244..77112262,+!p1@RORB!2.29!216.46!RORB;;chr22:38380543..38380569,-!p1@SOX10!2.19!155.00!SOX10;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.03!106.64!PEG3;;chr11:61520075..61520136,+!p1@C11orf9!1.99!196.99!C11orf9;;chr3:181429704..181429722,+!p1@SOX2!1.93!85.08!SOX2;;chr4:81118647..81118666,+!p1@PRDM8!1.91!103.76!PRDM8;;chr8:53322304..53322340,-!p1@ST18!1.90!77.58!ST18;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.88!74.23!POU3F3;;chr11:113930425..113930471,+!p1@ZBTB16!1.86!102.33!ZBTB16;;chr17:53342311..53342400,+!p1@HLF!1.82!73.59!HLF;;chr2:145277882..145277967,-!p3@ZEB2!1.75!94.18!ZEB2;;chr14:29235961..29236008,+!p1@FOXG1!1.73!53.32!FOXG1;;chr9:114287433..114287513,+!p1@ZNF483!1.69!119.57!ZNF483;;chr12:26277817..26277863,-!p2@BHLHE41!1.69!64.17!BHLHE41;;chr10:134599649..134599653,-!p1@NKX6-2!1.69!47.73!NKX6-2;;chr10:64134120..64134183,+!p1@ZNF365!1.67!55.23!ZNF365;;chr8:145560111..145560165,-!p2@SCRT1!1.67!46.29!SCRT1;;chr19:13135582..13135600,+!p3@NFIX!1.67!45.97!NFIX;;chr8:40755333..40755352,-!p1@ZMAT4!1.67!45.81!ZMAT4;;chr21:34398234..34398250,+!p1@OLIG2!1.67!45.66!OLIG2;;chr19:13135386..13135435,+!p4@NFIX!1.64!42.78!NFIX;;chr8:53322347..53322378,-!p2@ST18!1.63!41.98!ST18;;chr19:46801639..46801699,+!p1@HIF3A!1.62!40.55!HIF3A;;chr21:34442540..34442560,+!p2@OLIG1!1.62!40.55!OLIG1;;chr2:95963052..95963106,+!p1@KCNIP3!1.61!39.91!KCNIP3;;chr12:106976678..106976708,+!p2@RFX4!1.61!39.59!RFX4;;chr8:145560371..145560449,-!p1@SCRT1!1.61!39.43!SCRT1;;chr12:26277956..26277980,-!p1@BHLHE41!1.59!131.38!BHLHE41;;chr17:37764128..37764258,-!p1@NEUROD2!1.59!38.15!NEUROD2;;chr16:1031762..1031781,+!p1@SOX8!1.57!36.40!SOX8;;chr2:2334997..2335053,-!p1@MYT1L!1.57!35.76!MYT1L;;chr12:54779511..54779577,-!p5@ZNF385A!1.56!35.44!ZNF385A;;chr2:60781201..60781258,-!p3@BCL11A!1.56!35.28!BCL11A;;chr10:119302232..119302265,+!p1@EMX2!1.54!33.52!EMX2;;chr5:88178983..88179012,-!p1@MEF2C!1.52!236.26!MEF2C;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.50!30.33!SMARCE1;;chr2:162272785..162272836,+!p1@TBR1!1.49!29.85!TBR1;;chr18:53070846..53070902,-!p6@TCF4!1.48!29.05!TCF4;;chr15:80696703..80696754,+!p1@ARNT2!1.47!37.83!ARNT2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.46!28.10!POU3F3;;chr12:106976774..106976788,+!p1@RFX4!1.46!27.78!RFX4;;chr5:92920256..92920282,+!p7@NR2F1!1.45!32.72!NR2F1;;chr14:29236269..29236285,+!p3@FOXG1!1.45!27.30!FOXG1;;chr10:48355030..48355090,+!p1@ZNF488!1.44!33.68!ZNF488;;chr3:126076242..126076257,-!p1@KLF15!1.44!32.88!KLF15;;chr11:31832862..31832884,-!p2@PAX6!1.44!26.82!PAX6;;chr3:181429741..181429767,+!p2@SOX2!1.43!25.86!SOX2;;chr17:7492684..7492778,-!p2@SOX15!1.41!51.08!SOX15;;chr11:8102846..8102892,+!p1@TUB!1.41!34.48!TUB;;chrX:25034067..25034088,-!p1@ARX!1.41!24.58!ARX;;chr1:214161272..214161322,+!p1@PROX1!1.39!33.04!PROX1;;chr9:126774018..126774055,+!p1@LHX2!1.39!23.47!LHX2;;chr14:29234581..29234601,+!p2@FOXG1!1.39!23.47!FOXG1;;chr15:31658288..31658338,+!p4@KLF13!1.39!23.31!KLF13;;chr2:166326200..166326216,+!p1@CSRNP3!1.38!33.68!CSRNP3;;chr1:244219775..244219893,+!p2@ZNF238!1.38!30.81!ZNF238;;chr15:31631789..31631811,+!p13@KLF13!1.38!22.83!KLF13;;chr11:125034640..125034655,+!p1@PKNOX2!1.38!22.83!PKNOX2;;chr16:85932760..85932775,+!p1@IRF8!1.37!22.51!IRF8;;chr11:47400078..47400106,-!p1@SPI1!1.37!22.35!SPI1;;chr1:61548069..61548102,+!p3@NFIA!1.36!52.68!NFIA;;chr6:143266185..143266238,-!p2@HIVEP2!1.35!29.05!HIVEP2;;chr19:46800289..46800327,+!p2@HIF3A!1.34!20.91!HIF3A;;chr19:7580549..7580596,+!p3@ZNF358!1.34!20.91!ZNF358;;chr22:41763452..41763466,+!p2@TEF!1.33!20.59!TEF;;chr14:33403881..33403924,+!p1@NPAS3!1.33!20.27!NPAS3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.32!20.11!ZBED1;;chr12:103351444..103351461,+!p1@ASCL1!1.32!19.79!ASCL1;;chr11:113930401..113930422,+!p3@ZBTB16!1.31!19.48!ZBTB16;;chr4:57547454..57547469,-!p1@HOPX!1.30!19.16!HOPX;;chr15:80735246..80735321,+!p3@ARNT2!1.28!18.04!ARNT2;;chr2:60780607..60780624,-!p2@BCL11A!1.26!52.20!BCL11A;;chr11:113930291..113930339,+!p2@ZBTB16!1.26!27.78!ZBTB16;;chr12:54785074..54785122,-!p2@ZNF385A!1.26!26.18!ZNF385A;;chr14:33403648..33403710,+!p3@NPAS3!1.26!17.24!NPAS3;;chr15:61521417..61521460,-!p2@RORA!1.25!37.35!RORA;;chr14:33408072..33408114,+!p2@NPAS3!1.23!18.68!NPAS3;;chr6:15401104..15401166,+!p5@JARID2!1.22!15.64!JARID2;;chr7:63505799..63505904,+!p1@ZNF727!1.21!15.17!ZNF727;;chr17:70117153..70117174,+!p1@SOX9!1.20!150.69!SOX9;;chr3:187463179..187463201,-!p2@BCL6!1.19!58.90!BCL6;;chr6:126112039..126112062,+!p8@NCOA7!1.19!17.40!NCOA7;;chr17:38219209..38219230,+!p1@THRA!1.18!181.82!THRA;;chr15:80733570..80733659,+!p2@ARNT2!1.18!14.05!ARNT2;;chr16:67198633..67198671,+!p1@HSF4!1.18!14.05!HSF4;;chr5:71803177..71803255,-!p1@ZNF366!1.17!13.89!ZNF366;;chr6:28321971..28321995,-!p1@ZNF323!1.17!13.73!ZNF323;;chr2:2330039..2330072,-!p6@MYT1L!1.17!13.73!MYT1L;;chr9:77112225..7711223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|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.52!333.32!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.32!207.68!OLIG1;;chr9:77112244..77112262,+!p1@RORB!2.29!216.46!RORB;;chr22:38380543..38380569,-!p1@SOX10!2.19!155.00!SOX10;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.03!106.64!PEG3;;chr11:61520075..61520136,+!p1@C11orf9!1.99!196.99!C11orf9;;chr3:181429704..181429722,+!p1@SOX2!1.93!85.08!SOX2;;chr4:81118647..81118666,+!p1@PRDM8!1.91!103.76!PRDM8;;chr8:53322304..53322340,-!p1@ST18!1.90!77.58!ST18;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.88!74.23!POU3F3;;chr11:113930425..113930471,+!p1@ZBTB16!1.86!102.33!ZBTB16;;chr17:53342311..53342400,+!p1@HLF!1.82!73.59!HLF;;chr2:145277882..145277967,-!p3@ZEB2!1.75!94.18!ZEB2;;chr14:29235961..29236008,+!p1@FOXG1!1.73!53.32!FOXG1;;chr9:114287433..114287513,+!p1@ZNF483!1.69!119.57!ZNF483;;chr12:26277817..26277863,-!p2@BHLHE41!1.69!64.17!BHLHE41;;chr10:134599649..134599653,-!p1@NKX6-2!1.69!47.73!NKX6-2;;chr10:64134120..64134183,+!p1@ZNF365!1.67!55.23!ZNF365;;chr8:145560111..145560165,-!p2@SCRT1!1.67!46.29!SCRT1;;chr19:13135582..13135600,+!p3@NFIX!1.67!45.97!NFIX;;chr8:40755333..40755352,-!p1@ZMAT4!1.67!45.81!ZMAT4;;chr21:34398234..34398250,+!p1@OLIG2!1.67!45.66!OLIG2;;chr19:13135386..13135435,+!p4@NFIX!1.64!42.78!NFIX;;chr8:53322347..53322378,-!p2@ST18!1.63!41.98!ST18;;chr19:46801639..46801699,+!p1@HIF3A!1.62!40.55!HIF3A;;chr21:34442540..34442560,+!p2@OLIG1!1.62!40.55!OLIG1;;chr2:95963052..95963106,+!p1@KCNIP3!1.61!39.91!KCNIP3;;chr12:106976678..106976708,+!p2@RFX4!1.61!39.59!RFX4;;chr8:145560371..145560449,-!p1@SCRT1!1.61!39.43!SCRT1;;chr12:26277956..26277980,-!p1@BHLHE41!1.59!131.38!BHLHE41;;chr17:37764128..37764258,-!p1@NEUROD2!1.59!38.15!NEUROD2;;chr16:1031762..1031781,+!p1@SOX8!1.57!36.40!SOX8;;chr2:2334997..2335053,-!p1@MYT1L!1.57!35.76!MYT1L;;chr12:54779511..54779577,-!p5@ZNF385A!1.56!35.44!ZNF385A;;chr2:60781201..60781258,-!p3@BCL11A!1.56!35.28!BCL11A;;chr10:119302232..119302265,+!p1@EMX2!1.54!33.52!EMX2;;chr5:88178983..88179012,-!p1@MEF2C!1.52!236.26!MEF2C;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.50!30.33!SMARCE1;;chr2:162272785..162272836,+!p1@TBR1!1.49!29.85!TBR1;;chr18:53070846..53070902,-!p6@TCF4!1.48!29.05!TCF4;;chr15:80696703..80696754,+!p1@ARNT2!1.47!37.83!ARNT2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.46!28.10!POU3F3;;chr12:106976774..106976788,+!p1@RFX4!1.46!27.78!RFX4;;chr5:92920256..92920282,+!p7@NR2F1!1.45!32.72!NR2F1;;chr14:29236269..29236285,+!p3@FOXG1!1.45!27.30!FOXG1;;chr10:48355030..48355090,+!p1@ZNF488!1.44!33.68!ZNF488;;chr3:126076242..126076257,-!p1@KLF15!1.44!32.88!KLF15;;chr11:31832862..31832884,-!p2@PAX6!1.44!26.82!PAX6;;chr3:181429741..181429767,+!p2@SOX2!1.43!25.86!SOX2;;chr17:7492684..7492778,-!p2@SOX15!1.41!51.08!SOX15;;chr11:8102846..8102892,+!p1@TUB!1.41!34.48!TUB;;chrX:25034067..25034088,-!p1@ARX!1.41!24.58!ARX;;chr1:214161272..214161322,+!p1@PROX1!1.39!33.04!PROX1;;chr9:126774018..126774055,+!p1@LHX2!1.39!23.47!LHX2;;chr14:29234581..29234601,+!p2@FOXG1!1.39!23.47!FOXG1;;chr15:31658288..31658338,+!p4@KLF13!1.39!23.31!KLF13;;chr2:166326200..166326216,+!p1@CSRNP3!1.38!33.68!CSRNP3;;chr1:244219775..244219893,+!p2@ZNF238!1.38!30.81!ZNF238;;chr15:31631789..31631811,+!p13@KLF13!1.38!22.83!KLF13;;chr11:125034640..125034655,+!p1@PKNOX2!1.38!22.83!PKNOX2;;chr16:85932760..85932775,+!p1@IRF8!1.37!22.51!IRF8;;chr11:47400078..47400106,-!p1@SPI1!1.37!22.35!SPI1;;chr1:61548069..61548102,+!p3@NFIA!1.36!52.68!NFIA;;chr6:143266185..143266238,-!p2@HIVEP2!1.35!29.05!HIVEP2;;chr19:46800289..46800327,+!p2@HIF3A!1.34!20.91!HIF3A;;chr19:7580549..7580596,+!p3@ZNF358!1.34!20.91!ZNF358;;chr22:41763452..41763466,+!p2@TEF!1.33!20.59!TEF;;chr14:33403881..33403924,+!p1@NPAS3!1.33!20.27!NPAS3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.32!20.11!ZBED1;;chr12:103351444..103351461,+!p1@ASCL1!1.32!19.79!ASCL1;;chr11:113930401..113930422,+!p3@ZBTB16!1.31!19.48!ZBTB16;;chr4:57547454..57547469,-!p1@HOPX!1.30!19.16!HOPX;;chr15:80735246..80735321,+!p3@ARNT2!1.28!18.04!ARNT2;;chr2:60780607..60780624,-!p2@BCL11A!1.26!52.20!BCL11A;;chr11:113930291..113930339,+!p2@ZBTB16!1.26!27.78!ZBTB16;;chr12:54785074..54785122,-!p2@ZNF385A!1.26!26.18!ZNF385A;;chr14:33403648..33403710,+!p3@NPAS3!1.26!17.24!NPAS3;;chr15:61521417..61521460,-!p2@RORA!1.25!37.35!RORA;;chr14:33408072..33408114,+!p2@NPAS3!1.23!18.68!NPAS3;;chr6:15401104..15401166,+!p5@JARID2!1.22!15.64!JARID2;;chr7:63505799..63505904,+!p1@ZNF727!1.21!15.17!ZNF727;;chr17:70117153..70117174,+!p1@SOX9!1.20!150.69!SOX9;;chr3:187463179..187463201,-!p2@BCL6!1.19!58.90!BCL6;;chr6:126112039..126112062,+!p8@NCOA7!1.19!17.40!NCOA7;;chr17:38219209..38219230,+!p1@THRA!1.18!181.82!THRA;;chr15:80733570..80733659,+!p2@ARNT2!1.18!14.05!ARNT2;;chr16:67198633..67198671,+!p1@HSF4!1.18!14.05!HSF4;;chr5:71803177..71803255,-!p1@ZNF366!1.17!13.89!ZNF366;;chr6:28321971..28321995,-!p1@ZNF323!1.17!13.73!ZNF323;;chr2:2330039..2330072,-!p6@MYT1L!1.17!13.73!MYT1L;;chr9:77112225..7711223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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002021;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 43:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520cortex%252c%2520adult%252c%2520donor10252.CNhs12320.10163-103B1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520cortex%252c%2520adult%252c%2520donor10252.CNhs12320.10163-103B1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520cortex%252c%2520adult%252c%2520donor10252.CNhs12320.10163-103B1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/occipital%2520cortex%252c%2520adult%252c%2520donor10252.CNhs12320.10163-103B1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/occipital%2520cortex%252c%2520adult%252c%2520donor10252.CNhs12320.10163-103B1.hg38.nobarcode.ctss.bed.gz
|id=FF:10163-103B1
|id=FF:10163-103B1
|is_a=EFO:0002091;;FF:0000002;;FF:0010163
|is_a=EFO:0002091;;FF:0000002;;FF:0010163
Line 46: Line 53:
|library_id=CNhs12320
|library_id=CNhs12320
|library_id_phase_based=2:CNhs12320
|library_id_phase_based=2:CNhs12320
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10163
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10163
|name=occipital cortex, adult, donor10252
|name=occipital cortex, adult, donor10252
|namespace=FANTOM5
|namespace=FANTOM5
Line 53: Line 64:
|profile_rnaseq=
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|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 90: Line 102:
|top_motifs=DBP:3.88946881253;RREB1:3.64284049585;REST:3.46795473917;HOXA9_MEIS1:3.42977681827;CUX2:3.41378219144;MYFfamily:3.40137486392;PRRX1,2:3.32465038404;FOXP1:3.30257027681;ZFP161:3.28042031078;NHLH1,2:3.22834415441;AHR_ARNT_ARNT2:3.17875206167;ATF2:3.10162513208;EGR1..3:3.06462392223;PRDM1:3.00269612844;MED-1{core}:2.99981508086;FOXQ1:2.97291905611;MTE{core}:2.92908383671;SOX2:2.92876877326;PAX4:2.90278904178;BPTF:2.7987891738;FOXD3:2.79658929074;TFAP2B:2.73723158093;GTF2I:2.71007675153;OCT4_SOX2{dimer}:2.6828224335;MZF1:2.61522905402;PATZ1:2.60387095322;MTF1:2.5492628627;GATA4:2.54008769167;POU6F1:2.50541667901;ZBTB6:2.50175786337;HBP1_HMGB_SSRP1_UBTF:2.50155574363;SOX5:2.46808951996;POU5F1:2.46471150307;ZNF384:2.4403464076;HIC1:2.39818473584;PAX6:2.27608469623;NKX3-2:2.25214658562;IKZF2:2.22968123922;CDC5L:2.11397015256;NFIX:2.10032351377;SOX{8,9,10}:2.06998943992;FOXM1:2.06106351395;POU3F1..4:2.03554124766;TGIF1:1.92183999011;BREu{core}:1.90141579253;T:1.88938316207;RFX2..5_RFXANK_RFXAP:1.87667204852;NFIL3:1.85936093908;HMGA1,2:1.83034459119;SMAD1..7,9:1.81489759405;RFX1:1.81375322093;PAX5:1.78785305739;MAZ:1.78207556849;FOX{F1,F2,J1}:1.77468873393;POU1F1:1.75944117756;LMO2:1.75813274014;NKX6-1,2:1.70349867139;FOXL1:1.70212754448;GFI1B:1.6980404134;EP300:1.68371225139;XBP1:1.65101041035;ZBTB16:1.61644316902;HOX{A4,D4}:1.60804566042;TFDP1:1.60026872269;RBPJ:1.59531974207;ARID5B:1.59216003582;FOXP3:1.48203969715;KLF4:1.44725189047;NRF1:1.39634527666;TOPORS:1.38255210803;TEF:1.38010532869;AR:1.34552881436;FOX{D1,D2}:1.32697097868;ALX1:1.31101647709;SOX17:1.2878874311;STAT2,4,6:1.19000672617;SP1:1.1216063078;ZNF143:1.03946115281;LEF1_TCF7_TCF7L1,2:1.02779681429;STAT1,3:0.959238697585;FOX{I1,J2}:0.889437591463;EBF1:0.886459859507;NANOG:0.870230758849;GTF2A1,2:0.855744451395;TFAP2{A,C}:0.820241898816;CRX:0.812346248264;SPZ1:0.7877136316;FOXO1,3,4:0.755183106854;ADNP_IRX_SIX_ZHX:0.753354018971;MYBL2:0.749249399519;JUN:0.712874801867;MAFB:0.679726413324;ZNF238:0.669835349834;RORA:0.663431167599;ZNF423:0.662086290132;GCM1,2:0.640688934896;NR3C1:0.639567842979;HAND1,2:0.618911278712;GZF1:0.592669573272;TLX1..3_NFIC{dimer}:0.579597241891;TLX2:0.575493410173;SREBF1,2:0.562144945777;FOXN1:0.530030628124;CREB1:0.51362237061;HMX1:0.505732085109;ZEB1:0.439762350038;ZIC1..3:0.427231618798;AIRE:0.415947586801;ONECUT1,2:0.373960878335;IRF7:0.370115984496;GFI1:0.353945419136;HOX{A6,A7,B6,B7}:0.344016450146;MYOD1:0.324227299287;NKX2-3_NKX2-5:0.3162827325;LHX3,4:0.298179627654;MEF2{A,B,C,D}:0.195904223768;PITX1..3:0.135803223965;NKX2-2,8:0.133501856358;ATF5_CREB3:0.131894197096;NFATC1..3:0.123207353596;NFY{A,B,C}:0.121916048924;UFEwm:0.0848657952858;PAX2:0.0757404253344;XCPE1{core}:0.023631021531;IRF1,2:-0.0176152808878;CDX1,2,4:-0.0205651889763;PBX1:-0.17093478805;FOXA2:-0.214085018178;NKX3-1:-0.221794089676;DMAP1_NCOR{1,2}_SMARC:-0.225514258106;HSF1,2:-0.234296270731;YY1:-0.248465294295;ESRRA:-0.289723527681;ATF4:-0.390948141189;CEBPA,B_DDIT3:-0.393525587615;SPI1:-0.433321568234;NFE2L2:-0.439694162415;PDX1:-0.464867086338;EVI1:-0.46929243692;PAX1,9:-0.516136899291;IKZF1:-0.622379530879;NANOG{mouse}:-0.634136313854;VSX1,2:-0.66300659905;bHLH_family:-0.669428783383;SPIB:-0.674361960249;SNAI1..3:-0.694186071822;NFE2:-0.75342814125;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.780784892423;PAX3,7:-0.782678958072;ETS1,2:-0.785685722114;TBX4,5:-0.78820828254;ATF6:-0.9149769085;GATA6:-0.925096185185;E2F1..5:-0.987790965725;NFE2L1:-1.02395109418;TEAD1:-1.04200757669;NR1H4:-1.05025432067;HIF1A:-1.05248032874;TP53:-1.05752724865;PAX8:-1.06080726342;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.11017519303;HNF4A_NR2F1,2:-1.12396099513;HNF1A:-1.13175234568;TFAP4:-1.18010035995;FOSL2:-1.18810163812;BACH2:-1.2178893125;NFKB1_REL_RELA:-1.21948083155;TAL1_TCF{3,4,12}:-1.22397594005;FOS_FOS{B,L1}_JUN{B,D}:-1.23236583656;TFCP2:-1.24268845024;RUNX1..3:-1.3079635734;POU2F1..3:-1.32332557213;ZNF148:-1.35159149905;ELF1,2,4:-1.3821580027;ELK1,4_GABP{A,B1}:-1.40442001524;ALX4:-1.4969450577;NR5A1,2:-1.4980553741;NKX2-1,4:-1.50693208261;TBP:-1.52172666063;PPARG:-1.56543189274;RXR{A,B,G}:-1.57943363702;HLF:-1.68213720348;RXRA_VDR{dimer}:-1.78572124689;MYB:-1.84526453359;GLI1..3:-1.85210153067;SRF:-1.92074923497;STAT5{A,B}:-1.93613959286;NR6A1:-1.98796498598;ESR1:-2.01428773496;HOX{A5,B5}:-2.50045977329;EN1,2:-2.71234494534;HES1:-3.00033863733
|top_motifs=DBP:3.88946881253;RREB1:3.64284049585;REST:3.46795473917;HOXA9_MEIS1:3.42977681827;CUX2:3.41378219144;MYFfamily:3.40137486392;PRRX1,2:3.32465038404;FOXP1:3.30257027681;ZFP161:3.28042031078;NHLH1,2:3.22834415441;AHR_ARNT_ARNT2:3.17875206167;ATF2:3.10162513208;EGR1..3:3.06462392223;PRDM1:3.00269612844;MED-1{core}:2.99981508086;FOXQ1:2.97291905611;MTE{core}:2.92908383671;SOX2:2.92876877326;PAX4:2.90278904178;BPTF:2.7987891738;FOXD3:2.79658929074;TFAP2B:2.73723158093;GTF2I:2.71007675153;OCT4_SOX2{dimer}:2.6828224335;MZF1:2.61522905402;PATZ1:2.60387095322;MTF1:2.5492628627;GATA4:2.54008769167;POU6F1:2.50541667901;ZBTB6:2.50175786337;HBP1_HMGB_SSRP1_UBTF:2.50155574363;SOX5:2.46808951996;POU5F1:2.46471150307;ZNF384:2.4403464076;HIC1:2.39818473584;PAX6:2.27608469623;NKX3-2:2.25214658562;IKZF2:2.22968123922;CDC5L:2.11397015256;NFIX:2.10032351377;SOX{8,9,10}:2.06998943992;FOXM1:2.06106351395;POU3F1..4:2.03554124766;TGIF1:1.92183999011;BREu{core}:1.90141579253;T:1.88938316207;RFX2..5_RFXANK_RFXAP:1.87667204852;NFIL3:1.85936093908;HMGA1,2:1.83034459119;SMAD1..7,9:1.81489759405;RFX1:1.81375322093;PAX5:1.78785305739;MAZ:1.78207556849;FOX{F1,F2,J1}:1.77468873393;POU1F1:1.75944117756;LMO2:1.75813274014;NKX6-1,2:1.70349867139;FOXL1:1.70212754448;GFI1B:1.6980404134;EP300:1.68371225139;XBP1:1.65101041035;ZBTB16:1.61644316902;HOX{A4,D4}:1.60804566042;TFDP1:1.60026872269;RBPJ:1.59531974207;ARID5B:1.59216003582;FOXP3:1.48203969715;KLF4:1.44725189047;NRF1:1.39634527666;TOPORS:1.38255210803;TEF:1.38010532869;AR:1.34552881436;FOX{D1,D2}:1.32697097868;ALX1:1.31101647709;SOX17:1.2878874311;STAT2,4,6:1.19000672617;SP1:1.1216063078;ZNF143:1.03946115281;LEF1_TCF7_TCF7L1,2:1.02779681429;STAT1,3:0.959238697585;FOX{I1,J2}:0.889437591463;EBF1:0.886459859507;NANOG:0.870230758849;GTF2A1,2:0.855744451395;TFAP2{A,C}:0.820241898816;CRX:0.812346248264;SPZ1:0.7877136316;FOXO1,3,4:0.755183106854;ADNP_IRX_SIX_ZHX:0.753354018971;MYBL2:0.749249399519;JUN:0.712874801867;MAFB:0.679726413324;ZNF238:0.669835349834;RORA:0.663431167599;ZNF423:0.662086290132;GCM1,2:0.640688934896;NR3C1:0.639567842979;HAND1,2:0.618911278712;GZF1:0.592669573272;TLX1..3_NFIC{dimer}:0.579597241891;TLX2:0.575493410173;SREBF1,2:0.562144945777;FOXN1:0.530030628124;CREB1:0.51362237061;HMX1:0.505732085109;ZEB1:0.439762350038;ZIC1..3:0.427231618798;AIRE:0.415947586801;ONECUT1,2:0.373960878335;IRF7:0.370115984496;GFI1:0.353945419136;HOX{A6,A7,B6,B7}:0.344016450146;MYOD1:0.324227299287;NKX2-3_NKX2-5:0.3162827325;LHX3,4:0.298179627654;MEF2{A,B,C,D}:0.195904223768;PITX1..3:0.135803223965;NKX2-2,8:0.133501856358;ATF5_CREB3:0.131894197096;NFATC1..3:0.123207353596;NFY{A,B,C}:0.121916048924;UFEwm:0.0848657952858;PAX2:0.0757404253344;XCPE1{core}:0.023631021531;IRF1,2:-0.0176152808878;CDX1,2,4:-0.0205651889763;PBX1:-0.17093478805;FOXA2:-0.214085018178;NKX3-1:-0.221794089676;DMAP1_NCOR{1,2}_SMARC:-0.225514258106;HSF1,2:-0.234296270731;YY1:-0.248465294295;ESRRA:-0.289723527681;ATF4:-0.390948141189;CEBPA,B_DDIT3:-0.393525587615;SPI1:-0.433321568234;NFE2L2:-0.439694162415;PDX1:-0.464867086338;EVI1:-0.46929243692;PAX1,9:-0.516136899291;IKZF1:-0.622379530879;NANOG{mouse}:-0.634136313854;VSX1,2:-0.66300659905;bHLH_family:-0.669428783383;SPIB:-0.674361960249;SNAI1..3:-0.694186071822;NFE2:-0.75342814125;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.780784892423;PAX3,7:-0.782678958072;ETS1,2:-0.785685722114;TBX4,5:-0.78820828254;ATF6:-0.9149769085;GATA6:-0.925096185185;E2F1..5:-0.987790965725;NFE2L1:-1.02395109418;TEAD1:-1.04200757669;NR1H4:-1.05025432067;HIF1A:-1.05248032874;TP53:-1.05752724865;PAX8:-1.06080726342;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.11017519303;HNF4A_NR2F1,2:-1.12396099513;HNF1A:-1.13175234568;TFAP4:-1.18010035995;FOSL2:-1.18810163812;BACH2:-1.2178893125;NFKB1_REL_RELA:-1.21948083155;TAL1_TCF{3,4,12}:-1.22397594005;FOS_FOS{B,L1}_JUN{B,D}:-1.23236583656;TFCP2:-1.24268845024;RUNX1..3:-1.3079635734;POU2F1..3:-1.32332557213;ZNF148:-1.35159149905;ELF1,2,4:-1.3821580027;ELK1,4_GABP{A,B1}:-1.40442001524;ALX4:-1.4969450577;NR5A1,2:-1.4980553741;NKX2-1,4:-1.50693208261;TBP:-1.52172666063;PPARG:-1.56543189274;RXR{A,B,G}:-1.57943363702;HLF:-1.68213720348;RXRA_VDR{dimer}:-1.78572124689;MYB:-1.84526453359;GLI1..3:-1.85210153067;SRF:-1.92074923497;STAT5{A,B}:-1.93613959286;NR6A1:-1.98796498598;ESR1:-2.01428773496;HOX{A5,B5}:-2.50045977329;EN1,2:-2.71234494534;HES1:-3.00033863733
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10163-103B1;search_select_hide=table117:FF:10163-103B1
}}
}}

Latest revision as of 12:24, 3 June 2020

Name:occipital cortex, adult, donor10252
Species:Human (Homo sapiens)
Library ID:CNhs12320
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueoccipital cortex
dev stageNA
sexfemale
age76
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005357
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12320 CAGE DRX008691 DRR009563
Accession ID Hg19

Library idBAMCTSS
CNhs12320 DRZ000988 DRZ002373
Accession ID Hg38

Library idBAMCTSS
CNhs12320 DRZ012338 DRZ013723
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10034downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.357
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis1.039
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.272
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0.0643
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.0814
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.551
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.12
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0113
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.214
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0643
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.12
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.214
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.214
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0643
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.29
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.973
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.12
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0643
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.206
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.12
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.172
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0643
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.682
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0643
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.247
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.326
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0168
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0643
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.0643
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.569
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0595
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.51
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0751
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0792
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.684
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.12
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0.12
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.55
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.494
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.0643
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.597
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial1.575
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0643
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.12
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.292
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0643
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.622
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.684
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0.0643
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.551
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.0643
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.738
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0643
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12320

Jaspar motifP-value
MA0002.20.0443
MA0003.10.207
MA0004.10.339
MA0006.10.273
MA0007.10.356
MA0009.10.189
MA0014.10.638
MA0017.13.50006e-4
MA0018.20.546
MA0019.10.465
MA0024.10.64
MA0025.10.429
MA0027.10.627
MA0028.10.0564
MA0029.10.0687
MA0030.10.555
MA0031.10.816
MA0035.20.00513
MA0038.10.53
MA0039.20.135
MA0040.10.859
MA0041.10.374
MA0042.10.795
MA0043.10.874
MA0046.19.13091e-4
MA0047.20.0947
MA0048.10.186
MA0050.10.107
MA0051.10.114
MA0052.10.445
MA0055.10.00249
MA0057.10.786
MA0058.10.271
MA0059.10.0694
MA0060.10.682
MA0061.10.00783
MA0062.20.00259
MA0065.21.68703e-4
MA0066.10.00605
MA0067.10.875
MA0068.10.72
MA0069.10.616
MA0070.10.739
MA0071.10.0232
MA0072.10.343
MA0073.10.455
MA0074.10.26
MA0076.10.0852
MA0077.10.164
MA0078.10.794
MA0079.20.753
MA0080.24.09915e-7
MA0081.10.0262
MA0083.10.00509
MA0084.10.633
MA0087.10.853
MA0088.10.187
MA0090.10.409
MA0091.10.425
MA0092.10.254
MA0093.10.343
MA0099.27.65687e-21
MA0100.10.487
MA0101.10.00384
MA0102.20.19
MA0103.10.144
MA0104.20.396
MA0105.10.0013
MA0106.10.0475
MA0107.10.00434
MA0108.20.136
MA0111.10.612
MA0112.28.78094e-4
MA0113.10.573
MA0114.10.00117
MA0115.10.318
MA0116.10.00619
MA0117.10.853
MA0119.10.149
MA0122.10.782
MA0124.10.938
MA0125.10.523
MA0131.10.992
MA0135.10.167
MA0136.17.91622e-12
MA0137.20.321
MA0138.20.381
MA0139.10.349
MA0140.10.00233
MA0141.10.00255
MA0142.10.945
MA0143.10.486
MA0144.10.704
MA0145.10.168
MA0146.10.0169
MA0147.10.283
MA0148.10.0797
MA0149.10.0229
MA0150.11.35454e-4
MA0152.10.447
MA0153.10.0732
MA0154.10.043
MA0155.10.489
MA0156.11.62556e-7
MA0157.10.739
MA0159.10.00375
MA0160.10.00947
MA0162.10.113
MA0163.11.51358e-5
MA0164.10.875
MA0258.10.0099
MA0259.10.785



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12320

Novel motifP-value
10.0607
100.0619
1000.401
1010.586
1020.977
1030.0634
1040.149
1050.109
1060.0535
1070.115
1080.943
1090.00144
110.0142
1100.0484
1110.221
1120.325
1130.579
1140.19
1150.943
1160.133
1170.0118
1180.143
1190.287
120.433
1200.209
1210.247
1220.797
1230.306
1240.201
1250.29
1260.0267
1270.401
1280.197
1290.567
130.00167
1300.121
1310.0673
1320.555
1330.127
1340.591
1350.322
1360.00119
1370.931
1380.947
1390.15
140.793
1400.916
1410.464
1420.53
1430.0928
1440.922
1450.144
1460.506
1470.903
1480.241
1490.161
150.105
1500.157
1510.673
1520.0806
1530.7
1540.428
1550.855
1560.556
1570.42
1580.139
1590.015
160.0303
1600.232
1610.252
1620.621
1630.721
1640.0576
1650.0707
1660.865
1670.814
1680.42
1690.0112
170.11
180.0762
190.207
20.801
200.202
210.0494
220.184
230.458
240.0219
250.443
265.56588e-4
270.625
280.654
290.00622
30.0513
300.869
310.918
320.0156
330.0501
340.636
350.596
360.16
370.0351
380.386
390.29
40.823
400.0282
410.277
420.229
430.133
440.132
450.656
460.063
470.0652
480.0675
490.293
50.753
500.438
510.364
520.543
530.734
540.373
550.774
560.461
570.43
580.302
590.0606
60.836
600.0785
610.077
620.17
630.244
640.196
650.271
660.169
670.433
680.152
690.417
70.0606
700.0574
710.00979
720.296
730.0249
740.956
750.0395
760.529
770.127
780.0047
790.4
80.0565
800.373
810.603
820.513
830.0695
840.723
850.225
860.233
875.05946e-5
880.738
890.258
90.301
900.0831
910.841
920.532
930.867
940.193
950.00869
960.894
970.762
980.267
990.552



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12320


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002021 (occipital lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010163 (occipital cortex - adult donor)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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