FF:10156-103A3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005202 | ||
|accession_numbers=CAGE;DRX008685;DRR009557;DRZ000982;DRZ002367;DRZ012332;DRZ013717 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001871,UBERON:0000200,UBERON:0002771,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010156 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%252c%2520adult%252c%2520donor10252.CNhs12316.10156-103A3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%252c%2520adult%252c%2520donor10252.CNhs12316.10156-103A3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%252c%2520adult%252c%2520donor10252.CNhs12316.10156-103A3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%252c%2520adult%252c%2520donor10252.CNhs12316.10156-103A3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%252c%2520adult%252c%2520donor10252.CNhs12316.10156-103A3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10156-103A3 | |id=FF:10156-103A3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010156 | ||
|name= | |is_obsolete= | ||
|library_id=CNhs12316 | |||
|library_id_phase_based=2:CNhs12316 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10156 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10156 | |||
|name=medial temporal gyrus, adult, donor10252 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12316,LSID913,release011,COMPLETED | |profile_hcage=CNhs12316,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=26.73825 | |rna_weight_ug=26.73825 | ||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.28171930002054e-270!GO:0005737;cytoplasm;8.45078110927967e-145!GO:0043226;organelle;7.83054169636982e-104!GO:0043229;intracellular organelle;2.34741786914644e-103!GO:0043227;membrane-bound organelle;5.06229400338799e-96!GO:0043231;intracellular membrane-bound organelle;7.96589803353004e-96!GO:0044444;cytoplasmic part;4.66075145819759e-87!GO:0005515;protein binding;2.59655433108606e-71!GO:0044422;organelle part;6.20036235394816e-62!GO:0044446;intracellular organelle part;6.05651115595703e-61!GO:0032991;macromolecular complex;4.16154394152738e-58!GO:0016043;cellular component organization and biogenesis;4.03787764481749e-47!GO:0003723;RNA binding;3.02993468135593e-37!GO:0033036;macromolecule localization;5.09283454870824e-37!GO:0015031;protein transport;6.78299761764952e-36!GO:0030529;ribonucleoprotein complex;9.28086698054125e-36!GO:0005739;mitochondrion;1.41318954411594e-34!GO:0008104;protein localization;2.54303550941187e-33!GO:0043234;protein complex;2.89691644186297e-33!GO:0044428;nuclear part;6.84170160224516e-33!GO:0045184;establishment of protein localization;2.2092786912347e-32!GO:0043233;organelle lumen;2.28736527762725e-32!GO:0031974;membrane-enclosed lumen;2.28736527762725e-32!GO:0031090;organelle membrane;9.011931258484e-31!GO:0005634;nucleus;9.7127112358099e-30!GO:0046907;intracellular transport;1.88108067704714e-29!GO:0051649;establishment of cellular localization;2.11786424247372e-27!GO:0016071;mRNA metabolic process;3.93977884402259e-27!GO:0044238;primary metabolic process;4.05463655142802e-27!GO:0051641;cellular localization;5.46508181710898e-27!GO:0043170;macromolecule metabolic process;5.74606496563955e-27!GO:0016192;vesicle-mediated transport;1.00831566454107e-26!GO:0044237;cellular metabolic process;1.2133731145748e-25!GO:0044429;mitochondrial part;1.44600849939142e-25!GO:0006396;RNA processing;1.23434398446424e-24!GO:0008380;RNA splicing;5.28614259528047e-24!GO:0031975;envelope;8.23159375756611e-24!GO:0031967;organelle envelope;1.10007232476082e-23!GO:0019538;protein metabolic process;2.85595239512216e-23!GO:0006397;mRNA processing;3.04880783256652e-22!GO:0005829;cytosol;3.22818850105542e-22!GO:0006996;organelle organization and biogenesis;6.85420356414099e-22!GO:0006886;intracellular protein transport;3.6260858769133e-21!GO:0031981;nuclear lumen;1.70116275926554e-20!GO:0044260;cellular macromolecule metabolic process;5.52814725524498e-20!GO:0044267;cellular protein metabolic process;1.44688499933403e-19!GO:0043283;biopolymer metabolic process;1.64826098187899e-19!GO:0006119;oxidative phosphorylation;4.37672639097768e-19!GO:0005740;mitochondrial envelope;3.81112468280979e-18!GO:0000166;nucleotide binding;3.95180918544199e-18!GO:0005794;Golgi apparatus;8.49553295396852e-18!GO:0031966;mitochondrial membrane;8.83593539634859e-18!GO:0031982;vesicle;1.67498324007621e-17!GO:0005840;ribosome;2.85499261538747e-17!GO:0031410;cytoplasmic vesicle;9.75815088040756e-17!GO:0065003;macromolecular complex assembly;1.1989072465478e-16!GO:0019866;organelle inner membrane;1.23762918708614e-16!GO:0005681;spliceosome;2.40661104875435e-16!GO:0031988;membrane-bound vesicle;5.28480700324216e-16!GO:0005743;mitochondrial inner membrane;8.66087038128115e-16!GO:0016023;cytoplasmic membrane-bound vesicle;2.78614920169884e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.52038973841934e-15!GO:0016462;pyrophosphatase activity;4.27383808711726e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;4.27387128883041e-15!GO:0006512;ubiquitin cycle;5.3556355773316e-15!GO:0022607;cellular component assembly;8.15691282124127e-15!GO:0043412;biopolymer modification;1.24284211732648e-14!GO:0044455;mitochondrial membrane part;1.32861878624474e-14!GO:0043687;post-translational protein modification;3.01598648913789e-14!GO:0017111;nucleoside-triphosphatase activity;3.70550623813407e-14!GO:0006412;translation;3.97483504861541e-14!GO:0005654;nucleoplasm;7.9404771813433e-14!GO:0006464;protein modification process;8.55433067822326e-14!GO:0032553;ribonucleotide binding;9.92606739995296e-14!GO:0032555;purine ribonucleotide binding;9.92606739995296e-14!GO:0005746;mitochondrial respiratory chain;1.13693952674061e-13!GO:0010467;gene expression;2.12128338296647e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.83271421090986e-13!GO:0050136;NADH dehydrogenase (quinone) activity;3.98213602694394e-13!GO:0003954;NADH dehydrogenase activity;3.98213602694394e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.98213602694394e-13!GO:0044451;nucleoplasm part;5.4361107686437e-13!GO:0045045;secretory pathway;5.84289924517597e-13!GO:0003735;structural constituent of ribosome;7.0079124260604e-13!GO:0017076;purine nucleotide binding;1.14633311558288e-12!GO:0016874;ligase activity;2.36631175527635e-12!GO:0030695;GTPase regulator activity;2.58044509703019e-12!GO:0007264;small GTPase mediated signal transduction;6.04055832243101e-12!GO:0048770;pigment granule;6.06001019328298e-12!GO:0042470;melanosome;6.06001019328298e-12!GO:0043228;non-membrane-bound organelle;7.48708491579469e-12!GO:0043232;intracellular non-membrane-bound organelle;7.48708491579469e-12!GO:0006457;protein folding;1.3483145889799e-11!GO:0008134;transcription factor binding;2.99987557833959e-11!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.29269208449431e-11!GO:0008092;cytoskeletal protein binding;3.29457081909496e-11!GO:0030964;NADH dehydrogenase complex (quinone);3.71225837782096e-11!GO:0045271;respiratory chain complex I;3.71225837782096e-11!GO:0005747;mitochondrial respiratory chain complex I;3.71225837782096e-11!GO:0012505;endomembrane system;4.13921342782608e-11!GO:0048193;Golgi vesicle transport;4.23252399228982e-11!GO:0033279;ribosomal subunit;4.69555706896736e-11!GO:0006793;phosphorus metabolic process;5.87623408309527e-11!GO:0006796;phosphate metabolic process;5.87623408309527e-11!GO:0005083;small GTPase regulator activity;6.32708103353626e-11!GO:0042775;organelle ATP synthesis coupled electron transport;6.67141417372917e-11!GO:0042773;ATP synthesis coupled electron transport;6.67141417372917e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.08924664492623e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;1.38952138982572e-10!GO:0006511;ubiquitin-dependent protein catabolic process;1.48617678292041e-10!GO:0019941;modification-dependent protein catabolic process;2.0879624059559e-10!GO:0043632;modification-dependent macromolecule catabolic process;2.0879624059559e-10!GO:0009058;biosynthetic process;2.51036103242783e-10!GO:0044257;cellular protein catabolic process;3.447086177119e-10!GO:0022618;protein-RNA complex assembly;4.93750866289496e-10!GO:0030135;coated vesicle;5.9732965341115e-10!GO:0007010;cytoskeleton organization and biogenesis;6.13308867404881e-10!GO:0031980;mitochondrial lumen;1.00489298481303e-09!GO:0005759;mitochondrial matrix;1.00489298481303e-09!GO:0005768;endosome;1.2269736631445e-09!GO:0009059;macromolecule biosynthetic process;1.73642646497588e-09!GO:0044265;cellular macromolecule catabolic process;2.13068618470338e-09!GO:0016604;nuclear body;2.42065947814423e-09!GO:0019829;cation-transporting ATPase activity;2.67649602405726e-09!GO:0006605;protein targeting;3.00945068742182e-09!GO:0051082;unfolded protein binding;3.09237421578834e-09!GO:0006810;transport;3.26937125407678e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.42913622175962e-09!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.53745416097966e-09!GO:0043285;biopolymer catabolic process;4.8133954125548e-09!GO:0044445;cytosolic part;6.945468272493e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.67850089830674e-09!GO:0003924;GTPase activity;7.68461509628472e-09!GO:0008565;protein transporter activity;8.75072570104299e-09!GO:0000502;proteasome complex (sensu Eukaryota);9.02046521990053e-09!GO:0044249;cellular biosynthetic process;9.02046521990053e-09!GO:0032559;adenyl ribonucleotide binding;1.03392643593336e-08!GO:0008135;translation factor activity, nucleic acid binding;1.18256299202376e-08!GO:0016044;membrane organization and biogenesis;1.25086866452913e-08!GO:0016607;nuclear speck;1.68821124404241e-08!GO:0032940;secretion by cell;1.73318068843214e-08!GO:0030163;protein catabolic process;2.00080546892253e-08!GO:0007399;nervous system development;2.00207822402448e-08!GO:0008639;small protein conjugating enzyme activity;2.39358929139296e-08!GO:0030036;actin cytoskeleton organization and biogenesis;2.88067181998553e-08!GO:0004842;ubiquitin-protein ligase activity;3.35738016046184e-08!GO:0005524;ATP binding;3.85816976075921e-08!GO:0016310;phosphorylation;5.00760103710184e-08!GO:0019787;small conjugating protein ligase activity;5.04064607821066e-08!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.43818522796968e-08!GO:0015630;microtubule cytoskeleton;7.66159937933466e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.78173002593809e-08!GO:0019899;enzyme binding;7.82131093421247e-08!GO:0005525;GTP binding;7.87408564373087e-08!GO:0030554;adenyl nucleotide binding;9.37167253116583e-08!GO:0006461;protein complex assembly;1.01221169361141e-07!GO:0043005;neuron projection;1.28511625947587e-07!GO:0019717;synaptosome;1.45066398560822e-07!GO:0015986;ATP synthesis coupled proton transport;1.71586849272986e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.71586849272986e-07!GO:0044431;Golgi apparatus part;1.84718092639843e-07!GO:0030029;actin filament-based process;1.92740097033623e-07!GO:0009057;macromolecule catabolic process;2.86022005797738e-07!GO:0051179;localization;3.15130625657468e-07!GO:0006913;nucleocytoplasmic transport;3.15130625657468e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;3.57364777675486e-07!GO:0000375;RNA splicing, via transesterification reactions;3.57364777675486e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.57364777675486e-07!GO:0016070;RNA metabolic process;4.36800552700924e-07!GO:0051234;establishment of localization;5.10573139169469e-07!GO:0051169;nuclear transport;5.20459000390848e-07!GO:0030136;clathrin-coated vesicle;7.41127875625862e-07!GO:0006446;regulation of translational initiation;8.02238491167215e-07!GO:0015631;tubulin binding;8.0475534623874e-07!GO:0015935;small ribosomal subunit;9.2223287866905e-07!GO:0044248;cellular catabolic process;9.62221772593191e-07!GO:0016881;acid-amino acid ligase activity;1.02034202098354e-06!GO:0008287;protein serine/threonine phosphatase complex;1.09582311788826e-06!GO:0031965;nuclear membrane;1.11733768598408e-06!GO:0031252;leading edge;1.19050345723146e-06!GO:0048523;negative regulation of cellular process;1.23580348535327e-06!GO:0005783;endoplasmic reticulum;1.53894607050736e-06!GO:0007265;Ras protein signal transduction;1.57852115945083e-06!GO:0044440;endosomal part;1.65845806638181e-06!GO:0010008;endosome membrane;1.65845806638181e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;1.80984356526468e-06!GO:0016887;ATPase activity;1.80984356526468e-06!GO:0032561;guanyl ribonucleotide binding;1.89616516987999e-06!GO:0019001;guanyl nucleotide binding;1.89616516987999e-06!GO:0006413;translational initiation;1.90967683177718e-06!GO:0007242;intracellular signaling cascade;2.08495142401156e-06!GO:0048471;perinuclear region of cytoplasm;2.12009827809896e-06!GO:0003779;actin binding;2.3235341599509e-06!GO:0003712;transcription cofactor activity;2.46998029624886e-06!GO:0005635;nuclear envelope;2.60208100452768e-06!GO:0042623;ATPase activity, coupled;3.29965443949941e-06!GO:0003743;translation initiation factor activity;3.39814620220109e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.53770958288367e-06!GO:0005874;microtubule;3.8327210264259e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.8327210264259e-06!GO:0016568;chromatin modification;4.01361238928227e-06!GO:0005730;nucleolus;4.13213352889294e-06!GO:0048475;coated membrane;4.46898786261008e-06!GO:0030117;membrane coat;4.46898786261008e-06!GO:0051186;cofactor metabolic process;4.80955855912971e-06!GO:0046034;ATP metabolic process;4.97717600204955e-06!GO:0006754;ATP biosynthetic process;5.21555023730402e-06!GO:0006753;nucleoside phosphate metabolic process;5.21555023730402e-06!GO:0016469;proton-transporting two-sector ATPase complex;6.77038360308471e-06!GO:0009060;aerobic respiration;7.4242945351267e-06!GO:0051056;regulation of small GTPase mediated signal transduction;7.57954508454311e-06!GO:0008047;enzyme activator activity;7.80960178185808e-06!GO:0006323;DNA packaging;8.10705129943827e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.00222208453227e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.18542279732102e-05!GO:0009144;purine nucleoside triphosphate metabolic process;1.18542279732102e-05!GO:0032446;protein modification by small protein conjugation;1.19221449270127e-05!GO:0005096;GTPase activator activity;1.28409795488419e-05!GO:0006897;endocytosis;1.28646903195766e-05!GO:0010324;membrane invagination;1.28646903195766e-05!GO:0016564;transcription repressor activity;1.33160569031035e-05!GO:0045333;cellular respiration;1.35720275667317e-05!GO:0009199;ribonucleoside triphosphate metabolic process;1.49355632122699e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.49355632122699e-05!GO:0005905;coated pit;1.68305307313402e-05!GO:0005770;late endosome;1.79300405007681e-05!GO:0000139;Golgi membrane;1.81281637794005e-05!GO:0009141;nucleoside triphosphate metabolic process;1.81969964176098e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.81969964176098e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.82953756380362e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.82953756380362e-05!GO:0009152;purine ribonucleotide biosynthetic process;2.2068119000682e-05!GO:0051128;regulation of cellular component organization and biogenesis;2.23762649801141e-05!GO:0048519;negative regulation of biological process;2.2978674065598e-05!GO:0009142;nucleoside triphosphate biosynthetic process;2.41068225326556e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.41068225326556e-05!GO:0006164;purine nucleotide biosynthetic process;2.47242549655218e-05!GO:0009150;purine ribonucleotide metabolic process;2.51808856916945e-05!GO:0016567;protein ubiquitination;2.5206542234723e-05!GO:0006163;purine nucleotide metabolic process;2.63878657097561e-05!GO:0005769;early endosome;2.70851547573493e-05!GO:0008017;microtubule binding;3.25312101245025e-05!GO:0005761;mitochondrial ribosome;3.39261132547059e-05!GO:0000313;organellar ribosome;3.39261132547059e-05!GO:0017038;protein import;3.72420431491022e-05!GO:0006259;DNA metabolic process;3.91525619897681e-05!GO:0015934;large ribosomal subunit;3.97288847053026e-05!GO:0005085;guanyl-nucleotide exchange factor activity;4.40358196515492e-05!GO:0009259;ribonucleotide metabolic process;5.08473045054509e-05!GO:0045259;proton-transporting ATP synthase complex;5.54743838986567e-05!GO:0006099;tricarboxylic acid cycle;6.28374504354671e-05!GO:0046356;acetyl-CoA catabolic process;6.28374504354671e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;6.59648849685453e-05!GO:0015399;primary active transmembrane transporter activity;6.59648849685453e-05!GO:0009055;electron carrier activity;7.14796694458988e-05!GO:0050789;regulation of biological process;7.71152311717791e-05!GO:0030027;lamellipodium;8.08036771913282e-05!GO:0045786;negative regulation of progression through cell cycle;9.15667636013805e-05!GO:0030120;vesicle coat;9.90560981696233e-05!GO:0030662;coated vesicle membrane;9.90560981696233e-05!GO:0009260;ribonucleotide biosynthetic process;0.000100894082562148!GO:0005798;Golgi-associated vesicle;0.000104377955084614!GO:0006403;RNA localization;0.000123838683245953!GO:0030425;dendrite;0.000129613266017092!GO:0043492;ATPase activity, coupled to movement of substances;0.000129613266017092!GO:0000245;spliceosome assembly;0.000133642168259022!GO:0050794;regulation of cellular process;0.000135261381357223!GO:0009109;coenzyme catabolic process;0.000147032791379389!GO:0044453;nuclear membrane part;0.000156214422586864!GO:0050657;nucleic acid transport;0.000158895932950374!GO:0051236;establishment of RNA localization;0.000158895932950374!GO:0050658;RNA transport;0.000158895932950374!GO:0000151;ubiquitin ligase complex;0.000168626035453811!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000182689810212404!GO:0003676;nucleic acid binding;0.00018578076405227!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);0.00019537697963739!GO:0000159;protein phosphatase type 2A complex;0.000207449718537315!GO:0006732;coenzyme metabolic process;0.000226118710314933!GO:0048489;synaptic vesicle transport;0.000232156434526998!GO:0051246;regulation of protein metabolic process;0.000232156434526998!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000235370091744222!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000237749083915617!GO:0006366;transcription from RNA polymerase II promoter;0.00024861469439286!GO:0005643;nuclear pore;0.000254463309680634!GO:0022890;inorganic cation transmembrane transporter activity;0.000259940679225238!GO:0003714;transcription corepressor activity;0.000270993267730508!GO:0016301;kinase activity;0.000272346920280879!GO:0000902;cell morphogenesis;0.000280487083410972!GO:0032989;cellular structure morphogenesis;0.000280487083410972!GO:0006084;acetyl-CoA metabolic process;0.00031641644123415!GO:0046578;regulation of Ras protein signal transduction;0.000329842278830486!GO:0008021;synaptic vesicle;0.000332783362856473!GO:0051187;cofactor catabolic process;0.000343807862586368!GO:0004721;phosphoprotein phosphatase activity;0.000355281781814945!GO:0031072;heat shock protein binding;0.000406428790480621!GO:0003729;mRNA binding;0.000495249049548949!GO:0043566;structure-specific DNA binding;0.000517389710980497!GO:0008601;protein phosphatase type 2A regulator activity;0.000562936728537202!GO:0006888;ER to Golgi vesicle-mediated transport;0.000563626787128494!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);0.000563626787128494!GO:0016311;dephosphorylation;0.00056662922440339!GO:0007266;Rho protein signal transduction;0.000567023502848055!GO:0004674;protein serine/threonine kinase activity;0.000567379699206493!GO:0006606;protein import into nucleus;0.000578583574254308!GO:0008026;ATP-dependent helicase activity;0.000598562848648502!GO:0007019;microtubule depolymerization;0.000615086735276614!GO:0005793;ER-Golgi intermediate compartment;0.000640370506157674!GO:0051276;chromosome organization and biogenesis;0.000642096492866757!GO:0005938;cell cortex;0.000674016297078896!GO:0019208;phosphatase regulator activity;0.00068930488594861!GO:0003724;RNA helicase activity;0.00072231272276074!GO:0016791;phosphoric monoester hydrolase activity;0.000723452247861799!GO:0051170;nuclear import;0.00072382644402836!GO:0009892;negative regulation of metabolic process;0.000726285253798185!GO:0044432;endoplasmic reticulum part;0.000739354343914212!GO:0006613;cotranslational protein targeting to membrane;0.000744414754105468!GO:0051087;chaperone binding;0.000869725330193861!GO:0005773;vacuole;0.000882808559823016!GO:0043623;cellular protein complex assembly;0.00095245161021291!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000976955886026317!GO:0009056;catabolic process;0.00102228883834529!GO:0004386;helicase activity;0.00102228883834529!GO:0030133;transport vesicle;0.00103365533578739!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00103649265948414!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00107042169797958!GO:0009966;regulation of signal transduction;0.00113896321709119!GO:0019902;phosphatase binding;0.00114412430389647!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00114966521024812!GO:0005875;microtubule associated complex;0.00115753798701235!GO:0008219;cell death;0.00121287211325231!GO:0016265;death;0.00121287211325231!GO:0045055;regulated secretory pathway;0.00122310920262847!GO:0022406;membrane docking;0.00122797669941346!GO:0048278;vesicle docking;0.00122797669941346!GO:0016481;negative regulation of transcription;0.00124618599412947!GO:0051188;cofactor biosynthetic process;0.00129581661465476!GO:0006607;NLS-bearing substrate import into nucleus;0.00130293485754691!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00132992719916117!GO:0019904;protein domain specific binding;0.00137838136283687!GO:0030118;clathrin coat;0.00139485998872978!GO:0016197;endosome transport;0.00139578562375578!GO:0006904;vesicle docking during exocytosis;0.00144437424377917!GO:0006470;protein amino acid dephosphorylation;0.00145140792981447!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00145345360122302!GO:0004812;aminoacyl-tRNA ligase activity;0.00145345360122302!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00145345360122302!GO:0005741;mitochondrial outer membrane;0.00145616192927712!GO:0006402;mRNA catabolic process;0.00149348926167288!GO:0051028;mRNA transport;0.00164260545011793!GO:0031114;regulation of microtubule depolymerization;0.00193335511877357!GO:0007026;negative regulation of microtubule depolymerization;0.00193335511877357!GO:0012501;programmed cell death;0.00199430701885577!GO:0016050;vesicle organization and biogenesis;0.00204975223114238!GO:0030867;rough endoplasmic reticulum membrane;0.00205926992569877!GO:0007049;cell cycle;0.00207069786908671!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00210522330380146!GO:0030532;small nuclear ribonucleoprotein complex;0.00211734212028068!GO:0007269;neurotransmitter secretion;0.00217015656581478!GO:0006915;apoptosis;0.00217744999910648!GO:0005813;centrosome;0.00231834397579229!GO:0019888;protein phosphatase regulator activity;0.00237507828967303!GO:0050767;regulation of neurogenesis;0.00243296992462651!GO:0031901;early endosome membrane;0.00256596817211437!GO:0051726;regulation of cell cycle;0.00257437893702557!GO:0008154;actin polymerization and/or depolymerization;0.00257940682259313!GO:0004722;protein serine/threonine phosphatase activity;0.00267809786458774!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00275266682654119!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00277549603857708!GO:0006650;glycerophospholipid metabolic process;0.00288618890382713!GO:0043038;amino acid activation;0.00291229916065235!GO:0006418;tRNA aminoacylation for protein translation;0.00291229916065235!GO:0043039;tRNA aminoacylation;0.00291229916065235!GO:0006752;group transfer coenzyme metabolic process;0.0030937094694873!GO:0005791;rough endoplasmic reticulum;0.00312468730051045!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00313028788357596!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00313028788357596!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00313028788357596!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00320083128911902!GO:0006892;post-Golgi vesicle-mediated transport;0.00321249216057325!GO:0007017;microtubule-based process;0.00321249216057325!GO:0051261;protein depolymerization;0.00327194178622218!GO:0001726;ruffle;0.00340380258024338!GO:0006333;chromatin assembly or disassembly;0.00343655872810633!GO:0031968;organelle outer membrane;0.00347293642090535!GO:0003697;single-stranded DNA binding;0.00366624278060496!GO:0003713;transcription coactivator activity;0.00366624278060496!GO:0019867;outer membrane;0.00367913684758108!GO:0016363;nuclear matrix;0.00376768879167564!GO:0000074;regulation of progression through cell cycle;0.00391741542729332!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.00391741542729332!GO:0008139;nuclear localization sequence binding;0.00399503507063998!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00403859060363905!GO:0005100;Rho GTPase activator activity;0.00410211930649748!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00413050743900352!GO:0031324;negative regulation of cellular metabolic process;0.00432161036571098!GO:0005099;Ras GTPase activator activity;0.00432200898054867!GO:0008286;insulin receptor signaling pathway;0.00432351736610278!GO:0031902;late endosome membrane;0.00469995242324761!GO:0008654;phospholipid biosynthetic process;0.00477804241022324!GO:0005789;endoplasmic reticulum membrane;0.00481381062644232!GO:0000323;lytic vacuole;0.00484862735006597!GO:0005764;lysosome;0.00484862735006597!GO:0044448;cell cortex part;0.0048732255179899!GO:0005815;microtubule organizing center;0.00509812370465782!GO:0048468;cell development;0.00509812370465782!GO:0005048;signal sequence binding;0.00509812370465782!GO:0009108;coenzyme biosynthetic process;0.00521541788361759!GO:0051168;nuclear export;0.00524869957362961!GO:0045892;negative regulation of transcription, DNA-dependent;0.00526431291552739!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00548472396112026!GO:0055083;monovalent inorganic anion homeostasis;0.00548472396112026!GO:0055064;chloride ion homeostasis;0.00548472396112026!GO:0030644;cellular chloride ion homeostasis;0.00548472396112026!GO:0006887;exocytosis;0.00548617315113765!GO:0016740;transferase activity;0.00572212316199326!GO:0048487;beta-tubulin binding;0.00594051665639464!GO:0030426;growth cone;0.00613313850083069!GO:0051427;hormone receptor binding;0.00618143411026888!GO:0005516;calmodulin binding;0.00629468935592313!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00634194749507528!GO:0006891;intra-Golgi vesicle-mediated transport;0.00634221621344977!GO:0030427;site of polarized growth;0.00652855284322396!GO:0012506;vesicle membrane;0.0065808421532272!GO:0005869;dynactin complex;0.00695450511673865!GO:0050839;cell adhesion molecule binding;0.00708206951689868!GO:0019226;transmission of nerve impulse;0.00708441296798008!GO:0005839;proteasome core complex (sensu Eukaryota);0.00742474423163487!GO:0006612;protein targeting to membrane;0.00755107849828996!GO:0007272;ensheathment of neurons;0.0077116849364296!GO:0008366;axon ensheathment;0.0077116849364296!GO:0006916;anti-apoptosis;0.00773197623261898!GO:0008186;RNA-dependent ATPase activity;0.00776512950427999!GO:0032011;ARF protein signal transduction;0.00776512950427999!GO:0032012;regulation of ARF protein signal transduction;0.00776512950427999!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00787880028216034!GO:0030258;lipid modification;0.00815241262034736!GO:0030054;cell junction;0.00816691354645106!GO:0033673;negative regulation of kinase activity;0.0083603880010383!GO:0006469;negative regulation of protein kinase activity;0.0083603880010383!GO:0043209;myelin sheath;0.00847110431984918!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00854391540608018!GO:0050811;GABA receptor binding;0.008826563057272!GO:0019887;protein kinase regulator activity;0.00903416131749274!GO:0046467;membrane lipid biosynthetic process;0.00912502781149632!GO:0015629;actin cytoskeleton;0.0091706856685873!GO:0030424;axon;0.00990502709959724!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00990502709959724!GO:0004667;prostaglandin-D synthase activity;0.00990502709959724!GO:0050802;circadian sleep/wake cycle, sleep;0.00990502709959724!GO:0022410;circadian sleep/wake cycle process;0.00990502709959724!GO:0042749;regulation of circadian sleep/wake cycle;0.00990502709959724!GO:0015980;energy derivation by oxidation of organic compounds;0.00998863468540905!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0100364671444025!GO:0043087;regulation of GTPase activity;0.0103201760294707!GO:0042578;phosphoric ester hydrolase activity;0.0104103454700066!GO:0035257;nuclear hormone receptor binding;0.010536759990966!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0105994313858026!GO:0019198;transmembrane receptor protein phosphatase activity;0.0105994313858026!GO:0048167;regulation of synaptic plasticity;0.0108897530508869!GO:0051920;peroxiredoxin activity;0.0115859064289272!GO:0001508;regulation of action potential;0.011601173632035!GO:0046930;pore complex;0.0118253149628425!GO:0046488;phosphatidylinositol metabolic process;0.0123181379890757!GO:0030660;Golgi-associated vesicle membrane;0.0123369916416334!GO:0030742;GTP-dependent protein binding;0.0125657497697223!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.0132005160474635!GO:0019903;protein phosphatase binding;0.0132646113111401!GO:0043069;negative regulation of programmed cell death;0.0132794478687416!GO:0030658;transport vesicle membrane;0.0136480139520506!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0136999177501952!GO:0042254;ribosome biogenesis and assembly;0.0136999177501952!GO:0051348;negative regulation of transferase activity;0.0139208858618228!GO:0043066;negative regulation of apoptosis;0.0142436967102722!GO:0044433;cytoplasmic vesicle part;0.0151963307023588!GO:0035035;histone acetyltransferase binding;0.0151963307023588!GO:0042802;identical protein binding;0.0153842246691528!GO:0030384;phosphoinositide metabolic process;0.0155204647257365!GO:0030041;actin filament polymerization;0.015693377598744!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0159882891073888!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0159882891073888!GO:0033043;regulation of organelle organization and biogenesis;0.0159882891073888!GO:0048699;generation of neurons;0.0160756088141358!GO:0031124;mRNA 3'-end processing;0.0161963538328895!GO:0065002;intracellular protein transport across a membrane;0.0163350135081399!GO:0050803;regulation of synapse structure and activity;0.0163350135081399!GO:0022008;neurogenesis;0.0163350135081399!GO:0048500;signal recognition particle;0.0171652329439156!GO:0005885;Arp2/3 protein complex;0.0174311752618865!GO:0030132;clathrin coat of coated pit;0.0181681100592212!GO:0043021;ribonucleoprotein binding;0.0182179108826018!GO:0005774;vacuolar membrane;0.0183965081428246!GO:0004672;protein kinase activity;0.0187110723571813!GO:0051020;GTPase binding;0.018800454033952!GO:0019783;small conjugating protein-specific protease activity;0.0188466036100827!GO:0000059;protein import into nucleus, docking;0.0189221761157303!GO:0004004;ATP-dependent RNA helicase activity;0.0191120723818253!GO:0003690;double-stranded DNA binding;0.0193770776990827!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0195302565347613!GO:0006643;membrane lipid metabolic process;0.0200129083009174!GO:0065007;biological regulation;0.020309744118374!GO:0006401;RNA catabolic process;0.0204829762381384!GO:0008361;regulation of cell size;0.0206697102193956!GO:0051540;metal cluster binding;0.0206697102193956!GO:0051536;iron-sulfur cluster binding;0.0206697102193956!GO:0045296;cadherin binding;0.0210052955125526!GO:0006414;translational elongation;0.021073025964052!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0217817952423005!GO:0019207;kinase regulator activity;0.0219867872950304!GO:0035023;regulation of Rho protein signal transduction;0.0226940507645689!GO:0051789;response to protein stimulus;0.0228619036320191!GO:0006986;response to unfolded protein;0.0228619036320191!GO:0005092;GDP-dissociation inhibitor activity;0.023079413048145!GO:0004843;ubiquitin-specific protease activity;0.0234924887352603!GO:0004298;threonine endopeptidase activity;0.023976047825277!GO:0001505;regulation of neurotransmitter levels;0.0240730140540591!GO:0043086;negative regulation of catalytic activity;0.0246587015123033!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0248504484622909!GO:0042026;protein refolding;0.0256378957252366!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0262482622000965!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0262482622000965!GO:0005868;cytoplasmic dynein complex;0.0263801693015751!GO:0008088;axon cargo transport;0.0266777260074953!GO:0030137;COPI-coated vesicle;0.0277899047957197!GO:0000118;histone deacetylase complex;0.0285014126200701!GO:0051252;regulation of RNA metabolic process;0.0289533363113745!GO:0007034;vacuolar transport;0.0290103876982357!GO:0016859;cis-trans isomerase activity;0.0292761254293086!GO:0000314;organellar small ribosomal subunit;0.02927693631237!GO:0005763;mitochondrial small ribosomal subunit;0.02927693631237!GO:0006376;mRNA splice site selection;0.0293643503684063!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0293643503684063!GO:0005856;cytoskeleton;0.029509519199994!GO:0031109;microtubule polymerization or depolymerization;0.0295114046865087!GO:0003746;translation elongation factor activity;0.0295884330632964!GO:0019894;kinesin binding;0.0297621855797297!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.029856492267808!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0299108056463381!GO:0030182;neuron differentiation;0.0310098191996165!GO:0005952;cAMP-dependent protein kinase complex;0.0314780339194408!GO:0035258;steroid hormone receptor binding;0.0314780339194408!GO:0006468;protein amino acid phosphorylation;0.0317943289723135!GO:0031371;ubiquitin conjugating enzyme complex;0.0321881969209237!GO:0019911;structural constituent of myelin sheath;0.0331825670789867!GO:0005765;lysosomal membrane;0.0333431348515211!GO:0051539;4 iron, 4 sulfur cluster binding;0.033480187938163!GO:0030125;clathrin vesicle coat;0.033480187938163!GO:0030665;clathrin coated vesicle membrane;0.033480187938163!GO:0017166;vinculin binding;0.0334875639710506!GO:0000209;protein polyubiquitination;0.0335121542046651!GO:0000062;acyl-CoA binding;0.0341849025922796!GO:0004221;ubiquitin thiolesterase activity;0.0341849025922796!GO:0008022;protein C-terminus binding;0.0343304468235381!GO:0005667;transcription factor complex;0.0344833518308572!GO:0003725;double-stranded RNA binding;0.0351258448814257!GO:0043681;protein import into mitochondrion;0.0352709943692961!GO:0043488;regulation of mRNA stability;0.0363943202848736!GO:0043487;regulation of RNA stability;0.0363943202848736!GO:0005545;phosphatidylinositol binding;0.0364929987352081!GO:0051287;NAD binding;0.0365629062952878!GO:0030911;TPR domain binding;0.0365629062952878!GO:0030030;cell projection organization and biogenesis;0.0365629062952878!GO:0048858;cell projection morphogenesis;0.0365629062952878!GO:0032990;cell part morphogenesis;0.0365629062952878!GO:0016049;cell growth;0.0367898615586588!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0369297461723487!GO:0030659;cytoplasmic vesicle membrane;0.0370762688400318!GO:0016585;chromatin remodeling complex;0.0372428008706515!GO:0042995;cell projection;0.0379199452643419!GO:0031267;small GTPase binding;0.0382123710095222!GO:0006378;mRNA polyadenylation;0.0391321068652882!GO:0007243;protein kinase cascade;0.0395949225734461!GO:0031110;regulation of microtubule polymerization or depolymerization;0.0409731325592322!GO:0000287;magnesium ion binding;0.0413169808204449!GO:0007050;cell cycle arrest;0.0413567838325246!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0417854592440654!GO:0015002;heme-copper terminal oxidase activity;0.0417854592440654!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0417854592440654!GO:0004129;cytochrome-c oxidase activity;0.0417854592440654!GO:0006974;response to DNA damage stimulus;0.042050254937919!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0428179643629585!GO:0016079;synaptic vesicle exocytosis;0.0441118928159299!GO:0001578;microtubule bundle formation;0.044321750531151!GO:0006383;transcription from RNA polymerase III promoter;0.0444574866195484!GO:0017016;Ras GTPase binding;0.0452907351720032!GO:0031123;RNA 3'-end processing;0.0462884486028199!GO:0032535;regulation of cellular component size;0.0463852671153497!GO:0003711;transcription elongation regulator activity;0.0470803368265239!GO:0046839;phospholipid dephosphorylation;0.0473615536751846!GO:0004183;carboxypeptidase E activity;0.0480603075466373!GO:0030070;insulin processing;0.0480603075466373!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0481224826990005!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0483040382877476!GO:0045047;protein targeting to ER;0.0483040382877476!GO:0006364;rRNA processing;0.0495631240812936 | |||
|sample_id=10156 | |sample_id=10156 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=medial temporal gyrus | |sample_tissue=medial temporal gyrus | ||
|top_motifs=MYFfamily:3.79668972681;DBP:3.79353758765;CUX2:3.76287172979;RREB1:3.65537105897;PRRX1,2:3.61964823225;REST:3.57368581869;NHLH1,2:3.56669034391;AHR_ARNT_ARNT2:3.56007413674;PRDM1:3.46654073862;HOXA9_MEIS1:3.37546528277;ZFP161:3.3315129548;EGR1..3:3.29167545368;OCT4_SOX2{dimer}:3.07993073556;ATF2:3.05344538419;MTE{core}:3.01832366409;MED-1{core}:3.00284688832;GATA4:2.9936994666;POU5F1:2.90253593465;PAX6:2.85401682352;GTF2I:2.82281211439;SOX2:2.81038169783;ZBTB6:2.77761328765;HBP1_HMGB_SSRP1_UBTF:2.72193488613;MZF1:2.64332574602;POU6F1:2.62765369977;TFAP2B:2.59227499348;NKX3-2:2.51533132025;BPTF:2.50773611416;FOXD3:2.50195445241;MTF1:2.49721901402;FOXQ1:2.48872874904;IKZF2:2.45847053851;ZNF384:2.40853332253;SOX5:2.34679061252;RFX2..5_RFXANK_RFXAP:2.33314757879;PAX4:2.33084965596;PATZ1:2.25633453155;FOXP1:2.23440264274;RFX1:2.20244240547;HIC1:2.19815959107;SOX{8,9,10}:2.1896798691;FOXM1:2.05735383806;ARID5B:2.04714261829;TGIF1:1.98434571758;PAX5:1.97488911078;NFIL3:1.9608494563;POU3F1..4:1.95819295708;FOX{F1,F2,J1}:1.94747105267;KLF4:1.9278741167;T:1.91517498994;BREu{core}:1.89354746932;HOX{A4,D4}:1.87888726186;CDC5L:1.85451795832;LMO2:1.85172501759;NKX6-1,2:1.82193446313;HMGA1,2:1.81733604565;TEF:1.76449445165;GFI1B:1.74129425966;NFIX:1.73242009409;MAZ:1.72295880274;SMAD1..7,9:1.68974848606;NRF1:1.55181770969;SOX17:1.51404259317;EP300:1.50440450444;POU1F1:1.48759668146;FOXP3:1.36759754179;XBP1:1.28649519859;LEF1_TCF7_TCF7L1,2:1.28436363866;TFDP1:1.2609588438;ZBTB16:1.24976146958;AR:1.23784535834;RBPJ:1.17674524307;ZNF143:1.11592659245;ALX1:1.05464639357;HAND1,2:1.05386733741;FOX{D1,D2}:1.02744354449;ADNP_IRX_SIX_ZHX:0.993371462378;JUN:0.974789516808;NR3C1:0.956315608826;TLX2:0.952585083005;SP1:0.947969942274;GCM1,2:0.939193762946;TOPORS:0.928052052981;MAFB:0.926063646563;ZNF238:0.904709987062;GTF2A1,2:0.901717078624;STAT1,3:0.882667513775;EBF1:0.857319402587;FOXL1:0.802920381313;STAT2,4,6:0.802294495539;SPZ1:0.800745728287;MYBL2:0.79085145935;SREBF1,2:0.766918785236;NANOG:0.754476540206;ONECUT1,2:0.744470019357;FOX{I1,J2}:0.740657542418;HMX1:0.740214788883;RORA:0.650362023934;ZNF423:0.631399836045;TLX1..3_NFIC{dimer}:0.604807181626;NKX2-3_NKX2-5:0.597227890455;CRX:0.58911172389;MYOD1:0.570450745821;TFAP2{A,C}:0.55903450939;GFI1:0.51902736615;CREB1:0.468629041042;ZEB1:0.440590752509;FOXN1:0.429279786306;FOXO1,3,4:0.390500509449;AIRE:0.388792435047;GZF1:0.36606848209;ESRRA:0.281319850907;ZIC1..3:0.264589796112;MEF2{A,B,C,D}:0.217519887183;ATF5_CREB3:0.191737390756;IRF7:0.169742772711;YY1:0.164148177605;PBX1:0.152132648251;UFEwm:0.120442062343;LHX3,4:0.07747285772;PAX2:0.0650223726758;PDX1:0.0277687478935;NFATC1..3:-0.0163507270784;NFY{A,B,C}:-0.0554869202687;ATF4:-0.0769873381679;IRF1,2:-0.0925257366098;XCPE1{core}:-0.116659197993;CDX1,2,4:-0.127583926316;NKX2-2,8:-0.13856951839;PAX1,9:-0.156067387421;PITX1..3:-0.16600991535;FOXA2:-0.20448843963;DMAP1_NCOR{1,2}_SMARC:-0.242219597845;IKZF1:-0.333846644303;NFE2L2:-0.369369998488;NKX3-1:-0.384761904986;SPI1:-0.393404807363;HSF1,2:-0.415820442918;PAX3,7:-0.43665820537;TBX4,5:-0.454550152066;HOX{A6,A7,B6,B7}:-0.471151531273;EVI1:-0.475495185668;bHLH_family:-0.529083509218;VSX1,2:-0.551921259633;NANOG{mouse}:-0.609618768253;CEBPA,B_DDIT3:-0.6134707485;SNAI1..3:-0.671369760364;SPIB:-0.678503613127;NFE2:-0.696716269955;GATA6:-0.749479169103;ETS1,2:-0.85828984551;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.898272160433;NR1H4:-0.972727723993;TFAP4:-0.986270072413;PAX8:-0.994240262174;HNF1A:-1.04137148104;HIF1A:-1.07273637184;HNF4A_NR2F1,2:-1.09107160743;E2F1..5:-1.09809293804;BACH2:-1.15322740312;TP53:-1.16249404073;TAL1_TCF{3,4,12}:-1.17584949896;TEAD1:-1.17731933593;FOSL2:-1.1951342821;POU2F1..3:-1.2300520687;ZNF148:-1.24248395985;FOS_FOS{B,L1}_JUN{B,D}:-1.24637728624;NFE2L1:-1.26648206751;ATF6:-1.30288938251;RUNX1..3:-1.33425069826;NFKB1_REL_RELA:-1.34916125644;ELK1,4_GABP{A,B1}:-1.35531664981;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.38965290348;NR5A1,2:-1.39109148958;TFCP2:-1.42528625292;ELF1,2,4:-1.4510398664;RXR{A,B,G}:-1.46419977345;HLF:-1.58409342245;NKX2-1,4:-1.58576035281;ALX4:-1.63811995151;GLI1..3:-1.70616831994;TBP:-1.70651035643;PPARG:-1.71721089326;MYB:-1.75143536502;RXRA_VDR{dimer}:-1.89696101923;ESR1:-1.8987754455;SRF:-1.94677419517;HOX{A5,B5}:-2.32083032777;STAT5{A,B}:-2.45054287941;NR6A1:-2.58298533512;EN1,2:-2.88998579279;HES1:-2.99224734044 | |top_motifs=MYFfamily:3.79668972681;DBP:3.79353758765;CUX2:3.76287172979;RREB1:3.65537105897;PRRX1,2:3.61964823225;REST:3.57368581869;NHLH1,2:3.56669034391;AHR_ARNT_ARNT2:3.56007413674;PRDM1:3.46654073862;HOXA9_MEIS1:3.37546528277;ZFP161:3.3315129548;EGR1..3:3.29167545368;OCT4_SOX2{dimer}:3.07993073556;ATF2:3.05344538419;MTE{core}:3.01832366409;MED-1{core}:3.00284688832;GATA4:2.9936994666;POU5F1:2.90253593465;PAX6:2.85401682352;GTF2I:2.82281211439;SOX2:2.81038169783;ZBTB6:2.77761328765;HBP1_HMGB_SSRP1_UBTF:2.72193488613;MZF1:2.64332574602;POU6F1:2.62765369977;TFAP2B:2.59227499348;NKX3-2:2.51533132025;BPTF:2.50773611416;FOXD3:2.50195445241;MTF1:2.49721901402;FOXQ1:2.48872874904;IKZF2:2.45847053851;ZNF384:2.40853332253;SOX5:2.34679061252;RFX2..5_RFXANK_RFXAP:2.33314757879;PAX4:2.33084965596;PATZ1:2.25633453155;FOXP1:2.23440264274;RFX1:2.20244240547;HIC1:2.19815959107;SOX{8,9,10}:2.1896798691;FOXM1:2.05735383806;ARID5B:2.04714261829;TGIF1:1.98434571758;PAX5:1.97488911078;NFIL3:1.9608494563;POU3F1..4:1.95819295708;FOX{F1,F2,J1}:1.94747105267;KLF4:1.9278741167;T:1.91517498994;BREu{core}:1.89354746932;HOX{A4,D4}:1.87888726186;CDC5L:1.85451795832;LMO2:1.85172501759;NKX6-1,2:1.82193446313;HMGA1,2:1.81733604565;TEF:1.76449445165;GFI1B:1.74129425966;NFIX:1.73242009409;MAZ:1.72295880274;SMAD1..7,9:1.68974848606;NRF1:1.55181770969;SOX17:1.51404259317;EP300:1.50440450444;POU1F1:1.48759668146;FOXP3:1.36759754179;XBP1:1.28649519859;LEF1_TCF7_TCF7L1,2:1.28436363866;TFDP1:1.2609588438;ZBTB16:1.24976146958;AR:1.23784535834;RBPJ:1.17674524307;ZNF143:1.11592659245;ALX1:1.05464639357;HAND1,2:1.05386733741;FOX{D1,D2}:1.02744354449;ADNP_IRX_SIX_ZHX:0.993371462378;JUN:0.974789516808;NR3C1:0.956315608826;TLX2:0.952585083005;SP1:0.947969942274;GCM1,2:0.939193762946;TOPORS:0.928052052981;MAFB:0.926063646563;ZNF238:0.904709987062;GTF2A1,2:0.901717078624;STAT1,3:0.882667513775;EBF1:0.857319402587;FOXL1:0.802920381313;STAT2,4,6:0.802294495539;SPZ1:0.800745728287;MYBL2:0.79085145935;SREBF1,2:0.766918785236;NANOG:0.754476540206;ONECUT1,2:0.744470019357;FOX{I1,J2}:0.740657542418;HMX1:0.740214788883;RORA:0.650362023934;ZNF423:0.631399836045;TLX1..3_NFIC{dimer}:0.604807181626;NKX2-3_NKX2-5:0.597227890455;CRX:0.58911172389;MYOD1:0.570450745821;TFAP2{A,C}:0.55903450939;GFI1:0.51902736615;CREB1:0.468629041042;ZEB1:0.440590752509;FOXN1:0.429279786306;FOXO1,3,4:0.390500509449;AIRE:0.388792435047;GZF1:0.36606848209;ESRRA:0.281319850907;ZIC1..3:0.264589796112;MEF2{A,B,C,D}:0.217519887183;ATF5_CREB3:0.191737390756;IRF7:0.169742772711;YY1:0.164148177605;PBX1:0.152132648251;UFEwm:0.120442062343;LHX3,4:0.07747285772;PAX2:0.0650223726758;PDX1:0.0277687478935;NFATC1..3:-0.0163507270784;NFY{A,B,C}:-0.0554869202687;ATF4:-0.0769873381679;IRF1,2:-0.0925257366098;XCPE1{core}:-0.116659197993;CDX1,2,4:-0.127583926316;NKX2-2,8:-0.13856951839;PAX1,9:-0.156067387421;PITX1..3:-0.16600991535;FOXA2:-0.20448843963;DMAP1_NCOR{1,2}_SMARC:-0.242219597845;IKZF1:-0.333846644303;NFE2L2:-0.369369998488;NKX3-1:-0.384761904986;SPI1:-0.393404807363;HSF1,2:-0.415820442918;PAX3,7:-0.43665820537;TBX4,5:-0.454550152066;HOX{A6,A7,B6,B7}:-0.471151531273;EVI1:-0.475495185668;bHLH_family:-0.529083509218;VSX1,2:-0.551921259633;NANOG{mouse}:-0.609618768253;CEBPA,B_DDIT3:-0.6134707485;SNAI1..3:-0.671369760364;SPIB:-0.678503613127;NFE2:-0.696716269955;GATA6:-0.749479169103;ETS1,2:-0.85828984551;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.898272160433;NR1H4:-0.972727723993;TFAP4:-0.986270072413;PAX8:-0.994240262174;HNF1A:-1.04137148104;HIF1A:-1.07273637184;HNF4A_NR2F1,2:-1.09107160743;E2F1..5:-1.09809293804;BACH2:-1.15322740312;TP53:-1.16249404073;TAL1_TCF{3,4,12}:-1.17584949896;TEAD1:-1.17731933593;FOSL2:-1.1951342821;POU2F1..3:-1.2300520687;ZNF148:-1.24248395985;FOS_FOS{B,L1}_JUN{B,D}:-1.24637728624;NFE2L1:-1.26648206751;ATF6:-1.30288938251;RUNX1..3:-1.33425069826;NFKB1_REL_RELA:-1.34916125644;ELK1,4_GABP{A,B1}:-1.35531664981;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.38965290348;NR5A1,2:-1.39109148958;TFCP2:-1.42528625292;ELF1,2,4:-1.4510398664;RXR{A,B,G}:-1.46419977345;HLF:-1.58409342245;NKX2-1,4:-1.58576035281;ALX4:-1.63811995151;GLI1..3:-1.70616831994;TBP:-1.70651035643;PPARG:-1.71721089326;MYB:-1.75143536502;RXRA_VDR{dimer}:-1.89696101923;ESR1:-1.8987754455;SRF:-1.94677419517;HOX{A5,B5}:-2.32083032777;STAT5{A,B}:-2.45054287941;NR6A1:-2.58298533512;EN1,2:-2.88998579279;HES1:-2.99224734044 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10156-103A3;search_select_hide=table117:FF:10156-103A3 | |||
}} | }} | ||
Latest revision as of 12:23, 3 June 2020
| Name: | medial temporal gyrus, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12316 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12316
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12316
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0728 |
| 10 | 10 | 0.0602 |
| 100 | 100 | 0.366 |
| 101 | 101 | 0.469 |
| 102 | 102 | 0.975 |
| 103 | 103 | 0.139 |
| 104 | 104 | 0.174 |
| 105 | 105 | 0.157 |
| 106 | 106 | 0.0464 |
| 107 | 107 | 0.0983 |
| 108 | 108 | 0.955 |
| 109 | 109 | 0.00154 |
| 11 | 11 | 0.0126 |
| 110 | 110 | 0.0516 |
| 111 | 111 | 0.225 |
| 112 | 112 | 0.376 |
| 113 | 113 | 0.497 |
| 114 | 114 | 0.186 |
| 115 | 115 | 0.987 |
| 116 | 116 | 0.125 |
| 117 | 117 | 0.0123 |
| 118 | 118 | 0.142 |
| 119 | 119 | 0.213 |
| 12 | 12 | 0.479 |
| 120 | 120 | 0.241 |
| 121 | 121 | 0.26 |
| 122 | 122 | 0.837 |
| 123 | 123 | 0.58 |
| 124 | 124 | 0.147 |
| 125 | 125 | 0.192 |
| 126 | 126 | 0.0238 |
| 127 | 127 | 0.579 |
| 128 | 128 | 0.145 |
| 129 | 129 | 0.564 |
| 13 | 13 | 0.00113 |
| 130 | 130 | 0.147 |
| 131 | 131 | 0.0439 |
| 132 | 132 | 0.558 |
| 133 | 133 | 0.0843 |
| 134 | 134 | 0.583 |
| 135 | 135 | 0.188 |
| 136 | 136 | 6.04582e-4 |
| 137 | 137 | 0.861 |
| 138 | 138 | 0.983 |
| 139 | 139 | 0.115 |
| 14 | 14 | 0.829 |
| 140 | 140 | 0.702 |
| 141 | 141 | 0.579 |
| 142 | 142 | 0.906 |
| 143 | 143 | 0.107 |
| 144 | 144 | 0.903 |
| 145 | 145 | 0.137 |
| 146 | 146 | 0.541 |
| 147 | 147 | 0.832 |
| 148 | 148 | 0.395 |
| 149 | 149 | 0.243 |
| 15 | 15 | 0.093 |
| 150 | 150 | 0.149 |
| 151 | 151 | 0.657 |
| 152 | 152 | 0.0747 |
| 153 | 153 | 0.85 |
| 154 | 154 | 0.458 |
| 155 | 155 | 0.947 |
| 156 | 156 | 0.466 |
| 157 | 157 | 0.454 |
| 158 | 158 | 0.137 |
| 159 | 159 | 0.0153 |
| 16 | 16 | 0.0414 |
| 160 | 160 | 0.217 |
| 161 | 161 | 0.205 |
| 162 | 162 | 0.66 |
| 163 | 163 | 0.641 |
| 164 | 164 | 0.0467 |
| 165 | 165 | 0.045 |
| 166 | 166 | 0.898 |
| 167 | 167 | 0.993 |
| 168 | 168 | 0.577 |
| 169 | 169 | 0.0117 |
| 17 | 17 | 0.119 |
| 18 | 18 | 0.115 |
| 19 | 19 | 0.183 |
| 2 | 2 | 0.808 |
| 20 | 20 | 0.143 |
| 21 | 21 | 0.058 |
| 22 | 22 | 0.192 |
| 23 | 23 | 0.404 |
| 24 | 24 | 0.0224 |
| 25 | 25 | 0.475 |
| 26 | 26 | 3.8457e-4 |
| 27 | 27 | 0.74 |
| 28 | 28 | 0.644 |
| 29 | 29 | 0.00773 |
| 3 | 3 | 0.0523 |
| 30 | 30 | 0.931 |
| 31 | 31 | 0.861 |
| 32 | 32 | 0.0245 |
| 33 | 33 | 0.0488 |
| 34 | 34 | 0.598 |
| 35 | 35 | 0.636 |
| 36 | 36 | 0.194 |
| 37 | 37 | 0.0323 |
| 38 | 38 | 0.358 |
| 39 | 39 | 0.22 |
| 4 | 4 | 0.802 |
| 40 | 40 | 0.0272 |
| 41 | 41 | 0.312 |
| 42 | 42 | 0.259 |
| 43 | 43 | 0.13 |
| 44 | 44 | 0.156 |
| 45 | 45 | 0.633 |
| 46 | 46 | 0.0889 |
| 47 | 47 | 0.0684 |
| 48 | 48 | 0.0545 |
| 49 | 49 | 0.252 |
| 5 | 5 | 0.786 |
| 50 | 50 | 0.34 |
| 51 | 51 | 0.426 |
| 52 | 52 | 0.476 |
| 53 | 53 | 0.81 |
| 54 | 54 | 0.391 |
| 55 | 55 | 0.528 |
| 56 | 56 | 0.461 |
| 57 | 57 | 0.363 |
| 58 | 58 | 0.31 |
| 59 | 59 | 0.0723 |
| 6 | 6 | 0.904 |
| 60 | 60 | 0.0663 |
| 61 | 61 | 0.0735 |
| 62 | 62 | 0.187 |
| 63 | 63 | 0.212 |
| 64 | 64 | 0.207 |
| 65 | 65 | 0.256 |
| 66 | 66 | 0.164 |
| 67 | 67 | 0.357 |
| 68 | 68 | 0.21 |
| 69 | 69 | 0.371 |
| 7 | 7 | 0.0547 |
| 70 | 70 | 0.0558 |
| 71 | 71 | 0.0108 |
| 72 | 72 | 0.402 |
| 73 | 73 | 0.0231 |
| 74 | 74 | 0.941 |
| 75 | 75 | 0.0404 |
| 76 | 76 | 0.477 |
| 77 | 77 | 0.129 |
| 78 | 78 | 0.00223 |
| 79 | 79 | 0.394 |
| 8 | 8 | 0.0641 |
| 80 | 80 | 0.457 |
| 81 | 81 | 0.662 |
| 82 | 82 | 0.593 |
| 83 | 83 | 0.0485 |
| 84 | 84 | 0.593 |
| 85 | 85 | 0.244 |
| 86 | 86 | 0.221 |
| 87 | 87 | 5.25242e-5 |
| 88 | 88 | 0.796 |
| 89 | 89 | 0.356 |
| 9 | 9 | 0.337 |
| 90 | 90 | 0.086 |
| 91 | 91 | 0.863 |
| 92 | 92 | 0.532 |
| 93 | 93 | 0.94 |
| 94 | 94 | 0.202 |
| 95 | 95 | 0.00843 |
| 96 | 96 | 0.794 |
| 97 | 97 | 0.773 |
| 98 | 98 | 0.302 |
| 99 | 99 | 0.546 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12316
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010156 human medial temporal gyrus donor sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001871 (temporal lobe)
0000200 (gyrus)
0002771 (middle temporal gyrus)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010156 (human medial temporal gyrus donor sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
