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{{f5samples
{{f5samples
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Line 35: Line 42:
|fonse_treatment_closure=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520adult%252c%2520donor1.CNhs11796.10084-102B3.hg19.nobarcode.rdna.fa.gz
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|id=FF:10084-102B3
|id=FF:10084-102B3
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|name=brain, adult, donor1
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Line 42: Line 61:
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|rna_box=102
|rna_box=102
|rna_catalog_number=Cat: 636643 Lot: 8101369A-4
|rna_catalog_number=Cat: 636643 Lot: 8101369A-4
Line 57: Line 79:
|rna_weight_ug=10
|rna_weight_ug=10
|sample_age=
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_line=
Line 69: Line 92:
|sample_ethnicity=C
|sample_ethnicity=C
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0044424;intracellular part;0!GO:0005622;intracellular;0!GO:0005737;cytoplasm;2.34477518848546e-171!GO:0044444;cytoplasmic part;1.36301727039826e-129!GO:0043226;organelle;3.52769875821284e-74!GO:0043229;intracellular organelle;9.31771849846193e-74!GO:0043227;membrane-bound organelle;2.35138617235241e-71!GO:0043231;intracellular membrane-bound organelle;3.11255095178583e-71!GO:0044422;organelle part;1.57349875002347e-63!GO:0044446;intracellular organelle part;1.86008798013957e-62!GO:0005739;mitochondrion;2.41555518745643e-56!GO:0005515;protein binding;6.89244922638138e-54!GO:0032991;macromolecular complex;3.23439198246868e-53!GO:0031090;organelle membrane;1.57801860717048e-49!GO:0044429;mitochondrial part;7.37716144324233e-42!GO:0030529;ribonucleoprotein complex;6.41138653558383e-37!GO:0016043;cellular component organization and biogenesis;2.75974626467821e-34!GO:0031975;envelope;1.90733807616372e-31!GO:0031967;organelle envelope;3.01282137831735e-31!GO:0015031;protein transport;1.43781815204665e-30!GO:0043234;protein complex;4.57581584327325e-30!GO:0033036;macromolecule localization;6.018070538781e-30!GO:0003723;RNA binding;1.73489679278634e-28!GO:0005740;mitochondrial envelope;3.03187681539821e-28!GO:0008104;protein localization;7.26752418367925e-28!GO:0019538;protein metabolic process;7.65218728158889e-28!GO:0031966;mitochondrial membrane;1.82160993662503e-27!GO:0045184;establishment of protein localization;2.63946653561337e-27!GO:0005829;cytosol;1.21089348580264e-26!GO:0005840;ribosome;4.32882357759464e-26!GO:0043233;organelle lumen;2.69936198161572e-25!GO:0031974;membrane-enclosed lumen;2.69936198161572e-25!GO:0009058;biosynthetic process;3.71424350344077e-25!GO:0044260;cellular macromolecule metabolic process;4.19482728138889e-25!GO:0019866;organelle inner membrane;8.11665321273238e-25!GO:0046907;intracellular transport;1.5705390831076e-24!GO:0044267;cellular protein metabolic process;4.09787399451061e-24!GO:0016192;vesicle-mediated transport;4.7831336778692e-24!GO:0005743;mitochondrial inner membrane;6.67881008687362e-24!GO:0006119;oxidative phosphorylation;2.80798647614097e-23!GO:0051641;cellular localization;5.03456949410407e-22!GO:0003735;structural constituent of ribosome;5.37579877313578e-22!GO:0044238;primary metabolic process;1.11892106374833e-21!GO:0051649;establishment of cellular localization;1.17236292663085e-21!GO:0044237;cellular metabolic process;3.34075274824278e-21!GO:0005794;Golgi apparatus;4.75484862972918e-21!GO:0044249;cellular biosynthetic process;3.80265513366588e-20!GO:0031982;vesicle;5.76304338912308e-20!GO:0031988;membrane-bound vesicle;1.10376382775327e-19!GO:0012505;endomembrane system;2.11924879972763e-19!GO:0031410;cytoplasmic vesicle;2.42173031380027e-19!GO:0006412;translation;3.0581989277686e-19!GO:0016023;cytoplasmic membrane-bound vesicle;4.39202525987308e-19!GO:0033279;ribosomal subunit;6.26255239676225e-19!GO:0044455;mitochondrial membrane part;2.18324999269705e-18!GO:0006886;intracellular protein transport;2.43200816738763e-18!GO:0005746;mitochondrial respiratory chain;1.13870584072032e-17!GO:0009059;macromolecule biosynthetic process;1.86731675453009e-17!GO:0044428;nuclear part;1.94938300568474e-17!GO:0005783;endoplasmic reticulum;6.79461745316622e-17!GO:0031980;mitochondrial lumen;1.00478523791251e-16!GO:0005759;mitochondrial matrix;1.00478523791251e-16!GO:0016071;mRNA metabolic process;4.87285493823577e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.74727916605261e-15!GO:0003954;NADH dehydrogenase activity;1.74727916605261e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.74727916605261e-15!GO:0006810;transport;4.25980227708037e-15!GO:0006396;RNA processing;9.28760267583137e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.29582870628466e-14!GO:0065003;macromolecular complex assembly;2.21530471638464e-14!GO:0008380;RNA splicing;3.40504108411753e-14!GO:0043170;macromolecule metabolic process;9.50186288815012e-14!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.30717562498891e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.58868030106581e-13!GO:0045271;respiratory chain complex I;1.58868030106581e-13!GO:0005747;mitochondrial respiratory chain complex I;1.58868030106581e-13!GO:0000166;nucleotide binding;2.01430576953263e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.51791490789015e-13!GO:0042773;ATP synthesis coupled electron transport;2.51791490789015e-13!GO:0016874;ligase activity;2.73751750068845e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.87660610359262e-13!GO:0051186;cofactor metabolic process;5.0504003044156e-13!GO:0006397;mRNA processing;5.14970716025375e-13!GO:0006996;organelle organization and biogenesis;6.25729711248423e-13!GO:0044445;cytosolic part;1.14688814868375e-12!GO:0022607;cellular component assembly;1.23865357131783e-12!GO:0048770;pigment granule;1.28002649137354e-12!GO:0042470;melanosome;1.28002649137354e-12!GO:0043412;biopolymer modification;3.12986003875247e-12!GO:0006464;protein modification process;3.99531520648009e-12!GO:0051234;establishment of localization;5.45449053100684e-12!GO:0051179;localization;6.09622415300899e-12!GO:0006512;ubiquitin cycle;6.91572514036718e-12!GO:0030135;coated vesicle;9.72309484861436e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.48332183624399e-11!GO:0016817;hydrolase activity, acting on acid anhydrides;1.65715985587821e-11!GO:0016462;pyrophosphatase activity;1.92521823140756e-11!GO:0043687;post-translational protein modification;3.41489666691532e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.74244168929072e-11!GO:0007399;nervous system development;8.16262025042723e-11!GO:0019829;cation-transporting ATPase activity;8.3274749734468e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.54515392679082e-11!GO:0044431;Golgi apparatus part;1.00390213029649e-10!GO:0044432;endoplasmic reticulum part;1.38833814656713e-10!GO:0017111;nucleoside-triphosphatase activity;1.41774042292591e-10!GO:0044248;cellular catabolic process;1.61782069833472e-10!GO:0045045;secretory pathway;2.05243458316871e-10!GO:0048193;Golgi vesicle transport;2.46070799066064e-10!GO:0015935;small ribosomal subunit;2.59618816758649e-10!GO:0006457;protein folding;3.06968404163024e-10!GO:0005681;spliceosome;3.67835355437788e-10!GO:0007264;small GTPase mediated signal transduction;4.53889170418607e-10!GO:0032553;ribonucleotide binding;5.40912788404753e-10!GO:0032555;purine ribonucleotide binding;5.40912788404753e-10!GO:0017076;purine nucleotide binding;6.71671095578167e-10!GO:0006732;coenzyme metabolic process;1.03196035536508e-09!GO:0016044;membrane organization and biogenesis;1.11513183866028e-09!GO:0008092;cytoskeletal protein binding;1.16633660824239e-09!GO:0015934;large ribosomal subunit;1.50395946227001e-09!GO:0031981;nuclear lumen;1.61060098665692e-09!GO:0006793;phosphorus metabolic process;1.61060098665692e-09!GO:0006796;phosphate metabolic process;1.61060098665692e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.09763064426151e-09!GO:0051082;unfolded protein binding;2.49098688756446e-09!GO:0005789;endoplasmic reticulum membrane;3.61162237017425e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.63886235383923e-09!GO:0043005;neuron projection;4.11917962007761e-09!GO:0015986;ATP synthesis coupled proton transport;4.99866947209277e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.99866947209277e-09!GO:0009055;electron carrier activity;5.23587859031779e-09!GO:0005768;endosome;1.19460595462742e-08!GO:0030136;clathrin-coated vesicle;1.97397446545898e-08!GO:0006605;protein targeting;2.11174636690227e-08!GO:0044265;cellular macromolecule catabolic process;2.27540068741782e-08!GO:0008135;translation factor activity, nucleic acid binding;2.32193890960811e-08!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.37847721183006e-08!GO:0000139;Golgi membrane;2.93022715963593e-08!GO:0000502;proteasome complex (sensu Eukaryota);4.19950108090292e-08!GO:0009060;aerobic respiration;4.56784517781219e-08!GO:0008639;small protein conjugating enzyme activity;4.7016545638131e-08!GO:0003924;GTPase activity;4.7016545638131e-08!GO:0022618;protein-RNA complex assembly;5.74424714915072e-08!GO:0008565;protein transporter activity;5.96739018830901e-08!GO:0005761;mitochondrial ribosome;6.06852661442223e-08!GO:0000313;organellar ribosome;6.06852661442223e-08!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.60785490092818e-08!GO:0015078;hydrogen ion transmembrane transporter activity;8.01188295035419e-08!GO:0030695;GTPase regulator activity;8.12259397740971e-08!GO:0004842;ubiquitin-protein ligase activity;8.9385288004617e-08!GO:0051603;proteolysis involved in cellular protein catabolic process;9.63911143615778e-08!GO:0006163;purine nucleotide metabolic process;9.71550875480362e-08!GO:0046034;ATP metabolic process;1.01065629114332e-07!GO:0005525;GTP binding;1.01065629114332e-07!GO:0009141;nucleoside triphosphate metabolic process;1.18940783758862e-07!GO:0009150;purine ribonucleotide metabolic process;1.26032103995511e-07!GO:0006511;ubiquitin-dependent protein catabolic process;1.27425913182935e-07!GO:0045333;cellular respiration;1.36208344604486e-07!GO:0019941;modification-dependent protein catabolic process;1.444200566061e-07!GO:0043632;modification-dependent macromolecule catabolic process;1.444200566061e-07!GO:0005083;small GTPase regulator activity;1.46933581563813e-07!GO:0006164;purine nucleotide biosynthetic process;1.55172877845774e-07!GO:0044257;cellular protein catabolic process;1.56732787582804e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.61873326136119e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.61873326136119e-07!GO:0006461;protein complex assembly;1.66666635504952e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.91160767166068e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.12056334021495e-07!GO:0006754;ATP biosynthetic process;2.16204925081324e-07!GO:0006753;nucleoside phosphate metabolic process;2.16204925081324e-07!GO:0015631;tubulin binding;2.31672209050727e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.46928559632518e-07!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.30987693314116e-07!GO:0019787;small conjugating protein ligase activity;3.55149117494556e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.5765347149952e-07!GO:0009259;ribonucleotide metabolic process;4.84774168993865e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.17454961774071e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.17454961774071e-07!GO:0009142;nucleoside triphosphate biosynthetic process;7.05467073884387e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.05467073884387e-07!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.20483463575612e-07!GO:0009056;catabolic process;7.48931831002164e-07!GO:0051187;cofactor catabolic process;8.05837310891647e-07!GO:0005905;coated pit;1.06650235256564e-06!GO:0009057;macromolecule catabolic process;1.07685284190805e-06!GO:0019717;synaptosome;1.28508828192443e-06!GO:0009260;ribonucleotide biosynthetic process;1.53724474031539e-06!GO:0006099;tricarboxylic acid cycle;1.53724474031539e-06!GO:0046356;acetyl-CoA catabolic process;1.53724474031539e-06!GO:0048471;perinuclear region of cytoplasm;1.54648073210349e-06!GO:0016310;phosphorylation;1.57263131329734e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.57263131329734e-06!GO:0016881;acid-amino acid ligase activity;1.90618907183919e-06!GO:0022890;inorganic cation transmembrane transporter activity;1.9092745917539e-06!GO:0008134;transcription factor binding;2.26122806569526e-06!GO:0006897;endocytosis;2.27408513525893e-06!GO:0010324;membrane invagination;2.27408513525893e-06!GO:0008287;protein serine/threonine phosphatase complex;2.30878559344984e-06!GO:0009109;coenzyme catabolic process;2.71748867904043e-06!GO:0007010;cytoskeleton organization and biogenesis;2.80935373271629e-06!GO:0043285;biopolymer catabolic process;3.02778678129055e-06!GO:0030163;protein catabolic process;3.09295017235388e-06!GO:0032561;guanyl ribonucleotide binding;3.10596532909904e-06!GO:0019001;guanyl nucleotide binding;3.10596532909904e-06!GO:0006084;acetyl-CoA metabolic process;3.14786484664568e-06!GO:0032940;secretion by cell;3.14786484664568e-06!GO:0045259;proton-transporting ATP synthase complex;3.17866726669714e-06!GO:0048475;coated membrane;4.73034214760357e-06!GO:0030117;membrane coat;4.73034214760357e-06!GO:0006091;generation of precursor metabolites and energy;5.00081709874996e-06!GO:0003743;translation initiation factor activity;5.13167723258226e-06!GO:0005654;nucleoplasm;5.39973135411908e-06!GO:0005773;vacuole;5.6704081053594e-06!GO:0006446;regulation of translational initiation;6.93649105142294e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;7.14527771911696e-06!GO:0015399;primary active transmembrane transporter activity;7.14527771911696e-06!GO:0030036;actin cytoskeleton organization and biogenesis;7.62179215522118e-06!GO:0006082;organic acid metabolic process;1.06803405758696e-05!GO:0032559;adenyl ribonucleotide binding;1.18708390717568e-05!GO:0019752;carboxylic acid metabolic process;1.19773789804693e-05!GO:0044451;nucleoplasm part;1.3034681432829e-05!GO:0044255;cellular lipid metabolic process;1.36086641782722e-05!GO:0006752;group transfer coenzyme metabolic process;1.40012625306641e-05!GO:0030554;adenyl nucleotide binding;1.52449993289713e-05!GO:0006413;translational initiation;1.54225901683166e-05!GO:0006629;lipid metabolic process;1.60575227281623e-05!GO:0000398;nuclear mRNA splicing, via spliceosome;1.67454558244754e-05!GO:0000375;RNA splicing, via transesterification reactions;1.67454558244754e-05!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.67454558244754e-05!GO:0030425;dendrite;1.92406556458565e-05!GO:0006913;nucleocytoplasmic transport;2.06604348339231e-05!GO:0044440;endosomal part;2.1990708213908e-05!GO:0010008;endosome membrane;2.1990708213908e-05!GO:0008021;synaptic vesicle;2.23809870652567e-05!GO:0005770;late endosome;2.29233295125195e-05!GO:0043228;non-membrane-bound organelle;2.77913509703174e-05!GO:0043232;intracellular non-membrane-bound organelle;2.77913509703174e-05!GO:0051169;nuclear transport;2.8629691593e-05!GO:0005798;Golgi-associated vesicle;2.86797948537565e-05!GO:0031965;nuclear membrane;2.86797948537565e-05!GO:0051188;cofactor biosynthetic process;2.93725921507274e-05!GO:0043492;ATPase activity, coupled to movement of substances;3.20404788595353e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;3.40022914898787e-05!GO:0016491;oxidoreductase activity;3.84808546024802e-05!GO:0030029;actin filament-based process;3.99194629184222e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;4.25869492970034e-05!GO:0005769;early endosome;4.35186690010108e-05!GO:0003779;actin binding;4.59107701555974e-05!GO:0005524;ATP binding;4.66603410412355e-05!GO:0005635;nuclear envelope;4.72825009044467e-05!GO:0016740;transferase activity;5.32090530919004e-05!GO:0008654;phospholipid biosynthetic process;5.77139346900605e-05!GO:0016791;phosphoric monoester hydrolase activity;7.40743956145101e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.7042349536083e-05!GO:0000323;lytic vacuole;7.78116973447213e-05!GO:0005764;lysosome;7.78116973447213e-05!GO:0005741;mitochondrial outer membrane;8.28883599292658e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.3236295848619e-05!GO:0030120;vesicle coat;8.35454468631341e-05!GO:0030662;coated vesicle membrane;8.35454468631341e-05!GO:0008017;microtubule binding;8.53066487674239e-05!GO:0008610;lipid biosynthetic process;9.20271927843943e-05!GO:0005793;ER-Golgi intermediate compartment;9.24144037024055e-05!GO:0015980;energy derivation by oxidation of organic compounds;0.000102496426929731!GO:0007242;intracellular signaling cascade;0.000102496426929731!GO:0005634;nucleus;0.000108199015164868!GO:0044262;cellular carbohydrate metabolic process;0.000128378308417517!GO:0016126;sterol biosynthetic process;0.000128758629576894!GO:0032446;protein modification by small protein conjugation;0.00013925178277959!GO:0042623;ATPase activity, coupled;0.000155954944865311!GO:0031252;leading edge;0.000163292744179821!GO:0016567;protein ubiquitination;0.000164354883997816!GO:0019867;outer membrane;0.000168797188294365!GO:0046467;membrane lipid biosynthetic process;0.000168797188294365!GO:0031968;organelle outer membrane;0.000170156141057534!GO:0019226;transmission of nerve impulse;0.000187914029085959!GO:0017038;protein import;0.00021480094151972!GO:0016311;dephosphorylation;0.000223890424067526!GO:0007265;Ras protein signal transduction;0.000230550094357739!GO:0051128;regulation of cellular component organization and biogenesis;0.000289632368950602!GO:0051056;regulation of small GTPase mediated signal transduction;0.000299936088091356!GO:0030133;transport vesicle;0.00032264165069836!GO:0019899;enzyme binding;0.000344796155905704!GO:0006650;glycerophospholipid metabolic process;0.000400055785846285!GO:0016887;ATPase activity;0.000409669243823681!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000411679164793231!GO:0051246;regulation of protein metabolic process;0.000435188650260156!GO:0009108;coenzyme biosynthetic process;0.000447773095820598!GO:0004721;phosphoprotein phosphatase activity;0.000448451005140285!GO:0000151;ubiquitin ligase complex;0.000473148001569971!GO:0030426;growth cone;0.000498594834728375!GO:0006643;membrane lipid metabolic process;0.000569929706573796!GO:0006695;cholesterol biosynthetic process;0.000570909535853225!GO:0009117;nucleotide metabolic process;0.000596999242272861!GO:0008047;enzyme activator activity;0.000615620565783243!GO:0000902;cell morphogenesis;0.000658348827722435!GO:0032989;cellular structure morphogenesis;0.000658348827722435!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000663270581784553!GO:0005874;microtubule;0.000712659233920589!GO:0048523;negative regulation of cellular process;0.000795458234173961!GO:0006066;alcohol metabolic process;0.000805091152894692!GO:0045786;negative regulation of progression through cell cycle;0.000846227127338832!GO:0030427;site of polarized growth;0.000875481412930809!GO:0015630;microtubule cytoskeleton;0.000879314450289635!GO:0007019;microtubule depolymerization;0.000944252213647613!GO:0000159;protein phosphatase type 2A complex;0.000969991228962083!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00110963924768081!GO:0004722;protein serine/threonine phosphatase activity;0.00116237184394813!GO:0006470;protein amino acid dephosphorylation;0.0012076336616881!GO:0016301;kinase activity;0.00124836689560094!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00124836689560094!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00124836689560094!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00124836689560094!GO:0048699;generation of neurons;0.00125929549242447!GO:0030118;clathrin coat;0.00126116838600329!GO:0012506;vesicle membrane;0.00127236193955605!GO:0007269;neurotransmitter secretion;0.00131603442634748!GO:0022008;neurogenesis;0.00133589723347384!GO:0006888;ER to Golgi vesicle-mediated transport;0.00136199121574111!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00141625050118558!GO:0004812;aminoacyl-tRNA ligase activity;0.00141625050118558!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00141625050118558!GO:0043283;biopolymer metabolic process;0.00143581888661389!GO:0006613;cotranslational protein targeting to membrane;0.00150996009740567!GO:0048489;synaptic vesicle transport;0.00153149743819703!GO:0005085;guanyl-nucleotide exchange factor activity;0.00155097053073828!GO:0030027;lamellipodium;0.00157663228178189!GO:0044453;nuclear membrane part;0.00164156184931477!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00178548490374222!GO:0043623;cellular protein complex assembly;0.00184406093905385!GO:0030867;rough endoplasmic reticulum membrane;0.00188581690112217!GO:0005791;rough endoplasmic reticulum;0.00190985175925588!GO:0030424;axon;0.0019196715376232!GO:0005774;vacuolar membrane;0.00200232042142678!GO:0016604;nuclear body;0.00208115648140442!GO:0008154;actin polymerization and/or depolymerization;0.00208757738416163!GO:0050767;regulation of neurogenesis;0.00209073620187358!GO:0030182;neuron differentiation;0.00217985078421943!GO:0005730;nucleolus;0.00231560753079569!GO:0000245;spliceosome assembly;0.00233803259041627!GO:0019208;phosphatase regulator activity;0.00241723330882279!GO:0006414;translational elongation;0.0024718648972365!GO:0043038;amino acid activation;0.00268828718318295!GO:0006418;tRNA aminoacylation for protein translation;0.00268828718318295!GO:0043039;tRNA aminoacylation;0.00268828718318295!GO:0048487;beta-tubulin binding;0.00271830967221785!GO:0045055;regulated secretory pathway;0.00285138709813635!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0029396775109818!GO:0005096;GTPase activator activity;0.00305284808840913!GO:0016125;sterol metabolic process;0.00306436114260957!GO:0001505;regulation of neurotransmitter levels;0.00307406099769279!GO:0051920;peroxiredoxin activity;0.00307848007668964!GO:0031114;regulation of microtubule depolymerization;0.00310679822401361!GO:0007026;negative regulation of microtubule depolymerization;0.00310679822401361!GO:0044433;cytoplasmic vesicle part;0.00310679822401361!GO:0042578;phosphoric ester hydrolase activity;0.00323841530858831!GO:0005839;proteasome core complex (sensu Eukaryota);0.00342815624184031!GO:0003729;mRNA binding;0.00350531027872112!GO:0048519;negative regulation of biological process;0.0036351401633258!GO:0030532;small nuclear ribonucleoprotein complex;0.0036351401633258!GO:0005762;mitochondrial large ribosomal subunit;0.00386115976209553!GO:0000315;organellar large ribosomal subunit;0.00386115976209553!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00388042499377093!GO:0019318;hexose metabolic process;0.00407324968068663!GO:0051258;protein polymerization;0.00419532728999364!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00422386787810411!GO:0043209;myelin sheath;0.00422386787810411!GO:0004667;prostaglandin-D synthase activity;0.00422386787810411!GO:0050802;circadian sleep/wake cycle, sleep;0.00422386787810411!GO:0022410;circadian sleep/wake cycle process;0.00422386787810411!GO:0042749;regulation of circadian sleep/wake cycle;0.00422386787810411!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0043254035054545!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0043254035054545!GO:0005996;monosaccharide metabolic process;0.00457454985809256!GO:0005869;dynactin complex;0.00457454985809256!GO:0003712;transcription cofactor activity;0.00465967971393837!GO:0005048;signal sequence binding;0.00465967971393837!GO:0016607;nuclear speck;0.00466610284503553!GO:0007268;synaptic transmission;0.0047040379353186!GO:0005643;nuclear pore;0.00486843969002663!GO:0016050;vesicle organization and biogenesis;0.00504864466623053!GO:0009165;nucleotide biosynthetic process;0.00515236325297739!GO:0043284;biopolymer biosynthetic process;0.00518498910980846!GO:0030054;cell junction;0.00532986945478791!GO:0031072;heat shock protein binding;0.00549327739031604!GO:0006892;post-Golgi vesicle-mediated transport;0.0055622606153595!GO:0008601;protein phosphatase type 2A regulator activity;0.00556265224387922!GO:0007272;ensheathment of neurons;0.00567721036673639!GO:0008366;axon ensheathment;0.00567721036673639!GO:0005516;calmodulin binding;0.00579725454182094!GO:0046578;regulation of Ras protein signal transduction;0.00603070187694817!GO:0001578;microtubule bundle formation;0.00606255867639672!GO:0031902;late endosome membrane;0.00606461030344252!GO:0032787;monocarboxylic acid metabolic process;0.00611590613502505!GO:0007266;Rho protein signal transduction;0.00629989748918474!GO:0019888;protein phosphatase regulator activity;0.00647893184338547!GO:0032011;ARF protein signal transduction;0.00681921229406263!GO:0032012;regulation of ARF protein signal transduction;0.00681921229406263!GO:0044437;vacuolar part;0.00691331993615192!GO:0000314;organellar small ribosomal subunit;0.00693697085662568!GO:0005763;mitochondrial small ribosomal subunit;0.00693697085662568!GO:0006644;phospholipid metabolic process;0.0071028705560615!GO:0000096;sulfur amino acid metabolic process;0.00712336838881263!GO:0030384;phosphoinositide metabolic process;0.00719790765034597!GO:0006818;hydrogen transport;0.00721068841226687!GO:0030132;clathrin coat of coated pit;0.00740479319675111!GO:0006606;protein import into nucleus;0.00745392783527983!GO:0050811;GABA receptor binding;0.00759190200768743!GO:0048167;regulation of synaptic plasticity;0.00760325916671305!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00760325916671305!GO:0015002;heme-copper terminal oxidase activity;0.00760325916671305!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00760325916671305!GO:0004129;cytochrome-c oxidase activity;0.00760325916671305!GO:0005765;lysosomal membrane;0.00769320141763527!GO:0051287;NAD binding;0.00771507539100822!GO:0005975;carbohydrate metabolic process;0.00771507539100822!GO:0006665;sphingolipid metabolic process;0.00775093332693799!GO:0009966;regulation of signal transduction;0.0077893177955806!GO:0048037;cofactor binding;0.00786075582998733!GO:0051261;protein depolymerization;0.00787809067594506!GO:0051170;nuclear import;0.00798898415095456!GO:0030041;actin filament polymerization;0.0081696911451011!GO:0046474;glycerophospholipid biosynthetic process;0.00831734569965373!GO:0030659;cytoplasmic vesicle membrane;0.00834706616846162!GO:0051540;metal cluster binding;0.00844871481579395!GO:0051536;iron-sulfur cluster binding;0.00844871481579395!GO:0046488;phosphatidylinositol metabolic process;0.00845909863461242!GO:0016197;endosome transport;0.0085899282122558!GO:0031901;early endosome membrane;0.00887708558468758!GO:0019902;phosphatase binding;0.00887708558468758!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0088773084553004!GO:0003746;translation elongation factor activity;0.00916318301375686!GO:0005938;cell cortex;0.00925476668288865!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00941724959543843!GO:0042802;identical protein binding;0.00965546094960681!GO:0003714;transcription corepressor activity;0.00976107643650994!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0100742680195941!GO:0000062;acyl-CoA binding;0.0100742680195941!GO:0006612;protein targeting to membrane;0.0101656532064951!GO:0004298;threonine endopeptidase activity;0.0101656532064951!GO:0019843;rRNA binding;0.0102078849753792!GO:0006891;intra-Golgi vesicle-mediated transport;0.0105089350230058!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0105089350230058!GO:0055083;monovalent inorganic anion homeostasis;0.0105089350230058!GO:0055064;chloride ion homeostasis;0.0105089350230058!GO:0030644;cellular chloride ion homeostasis;0.0105089350230058!GO:0015992;proton transport;0.0107826566568517!GO:0004674;protein serine/threonine kinase activity;0.0108838367903154!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0108838367903154!GO:0000287;magnesium ion binding;0.0108932204162945!GO:0006631;fatty acid metabolic process;0.0109044244728158!GO:0048666;neuron development;0.0111216961386918!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0113013224255084!GO:0019198;transmembrane receptor protein phosphatase activity;0.0113013224255084!GO:0008250;oligosaccharyl transferase complex;0.0115557694524542!GO:0006325;establishment and/or maintenance of chromatin architecture;0.0116389610021814!GO:0003697;single-stranded DNA binding;0.011692580579031!GO:0030660;Golgi-associated vesicle membrane;0.0117942800860967!GO:0006007;glucose catabolic process;0.0119399788833843!GO:0008203;cholesterol metabolic process;0.0119695641023417!GO:0051087;chaperone binding;0.0119695641023417!GO:0006672;ceramide metabolic process;0.012147722242165!GO:0043025;cell soma;0.0125017377617425!GO:0031301;integral to organelle membrane;0.012600647683573!GO:0030137;COPI-coated vesicle;0.0127286194894384!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0129613388976626!GO:0050803;regulation of synapse structure and activity;0.0134057608419623!GO:0065002;intracellular protein transport across a membrane;0.0135430223771132!GO:0001508;regulation of action potential;0.0136104959574965!GO:0006403;RNA localization;0.0137979762364955!GO:0008286;insulin receptor signaling pathway;0.0138877929019135!GO:0043681;protein import into mitochondrion;0.0141182209711665!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.014367535606877!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.0144355859945966!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0145986262754652!GO:0050662;coenzyme binding;0.0151068139162927!GO:0050657;nucleic acid transport;0.0151068139162927!GO:0051236;establishment of RNA localization;0.0151068139162927!GO:0050658;RNA transport;0.0151068139162927!GO:0043566;structure-specific DNA binding;0.0151721762061515!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.015802110332443!GO:0006096;glycolysis;0.0162581992546754!GO:0009066;aspartate family amino acid metabolic process;0.0162699733668771!GO:0003724;RNA helicase activity;0.0163122852343508!GO:0006006;glucose metabolic process;0.0164367616357645!GO:0008139;nuclear localization sequence binding;0.0164367616357645!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0165172946588545!GO:0007006;mitochondrial membrane organization and biogenesis;0.0165402556119539!GO:0005092;GDP-dissociation inhibitor activity;0.0167241438192851!GO:0046930;pore complex;0.0168601308536739!GO:0006519;amino acid and derivative metabolic process;0.0168631895316534!GO:0051659;maintenance of mitochondrion localization;0.0171653050598808!GO:0051657;maintenance of organelle localization;0.0171653050598808!GO:0046519;sphingoid metabolic process;0.017481199384701!GO:0007005;mitochondrion organization and biogenesis;0.0176365276170081!GO:0006595;polyamine metabolic process;0.0181712381038947!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0181716731310016!GO:0048667;neuron morphogenesis during differentiation;0.0184881877268905!GO:0048812;neurite morphogenesis;0.0184881877268905!GO:0051427;hormone receptor binding;0.0206045922923341!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0209302487995911!GO:0000904;cellular morphogenesis during differentiation;0.021890267362212!GO:0007158;neuron adhesion;0.021890267362212!GO:0005875;microtubule associated complex;0.022028372919873!GO:0031109;microtubule polymerization or depolymerization;0.022147817476558!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.022147817476558!GO:0019887;protein kinase regulator activity;0.0224341332090086!GO:0005885;Arp2/3 protein complex;0.0227533988885062!GO:0030658;transport vesicle membrane;0.0227533988885062!GO:0016568;chromatin modification;0.0228242836527603!GO:0031175;neurite development;0.0234219216595264!GO:0035035;histone acetyltransferase binding;0.0234219216595264!GO:0051248;negative regulation of protein metabolic process;0.0254743391728132!GO:0030742;GTP-dependent protein binding;0.0267498787591113!GO:0016564;transcription repressor activity;0.0267848670548189!GO:0030030;cell projection organization and biogenesis;0.0282253612330564!GO:0048858;cell projection morphogenesis;0.0282253612330564!GO:0032990;cell part morphogenesis;0.0282253612330564!GO:0019894;kinesin binding;0.0286644420279858!GO:0030176;integral to endoplasmic reticulum membrane;0.029201202140996!GO:0016579;protein deubiquitination;0.0293659561972185!GO:0007033;vacuole organization and biogenesis;0.0295566193095384!GO:0006916;anti-apoptosis;0.0298061450823975!GO:0050749;apolipoprotein E receptor binding;0.0300155838712416!GO:0004576;oligosaccharyl transferase activity;0.0301701485912748!GO:0006118;electron transport;0.0301701485912748!GO:0030145;manganese ion binding;0.030213241954167!GO:0043021;ribonucleoprotein binding;0.0303366422105345!GO:0008652;amino acid biosynthetic process;0.0305671435629151!GO:0048468;cell development;0.0305671435629151!GO:0008219;cell death;0.0305671435629151!GO:0016265;death;0.0305671435629151!GO:0050435;beta-amyloid metabolic process;0.0307617264115607!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0313412067962473!GO:0019903;protein phosphatase binding;0.0318704664806349!GO:0019207;kinase regulator activity;0.0321498658700916!GO:0004113;2',3'-cyclic-nucleotide 3'-phosphodiesterase activity;0.0321979414250907!GO:0009214;cyclic nucleotide catabolic process;0.0321979414250907!GO:0033116;ER-Golgi intermediate compartment membrane;0.032380398057628!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0326643104214978!GO:0006607;NLS-bearing substrate import into nucleus;0.0328104997636454!GO:0004680;casein kinase activity;0.0331827081702422!GO:0006323;DNA packaging;0.0331827081702422!GO:0043069;negative regulation of programmed cell death;0.0333671955190328!GO:0035257;nuclear hormone receptor binding;0.0333733176763101!GO:0008180;signalosome;0.0341017010171952!GO:0042552;myelination;0.0341468385609842!GO:0004683;calmodulin-dependent protein kinase activity;0.0341915852543093!GO:0019911;structural constituent of myelin sheath;0.0345987862280984!GO:0043254;regulation of protein complex assembly;0.0347144915717053!GO:0006633;fatty acid biosynthetic process;0.0355411318698925!GO:0008026;ATP-dependent helicase activity;0.0356423603619232!GO:0006778;porphyrin metabolic process;0.0356577000340355!GO:0033013;tetrapyrrole metabolic process;0.0356577000340355!GO:0043066;negative regulation of apoptosis;0.0356726984400476!GO:0031124;mRNA 3'-end processing;0.0358039556399837!GO:0030125;clathrin vesicle coat;0.0361324513831649!GO:0030665;clathrin coated vesicle membrane;0.0361324513831649!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0365732193137075!GO:0008361;regulation of cell size;0.0366252933033244!GO:0030911;TPR domain binding;0.0371626867361721!GO:0050839;cell adhesion molecule binding;0.0378502804012906!GO:0043488;regulation of mRNA stability;0.0379571639129026!GO:0043487;regulation of RNA stability;0.0379571639129026!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0379571639129026!GO:0010257;NADH dehydrogenase complex assembly;0.0379571639129026!GO:0033108;mitochondrial respiratory chain complex assembly;0.0379571639129026!GO:0005868;cytoplasmic dynein complex;0.0382724740261931!GO:0042176;regulation of protein catabolic process;0.0382724740261931!GO:0000097;sulfur amino acid biosynthetic process;0.0390586994238576!GO:0006790;sulfur metabolic process;0.0395540508053077!GO:0006402;mRNA catabolic process;0.0401634661279223!GO:0016829;lyase activity;0.0403722044906169!GO:0051168;nuclear export;0.0412171334477457!GO:0050178;phenylpyruvate tautomerase activity;0.0412171334477457!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0418614487856603!GO:0044438;microbody part;0.0420585334649309!GO:0044439;peroxisomal part;0.0420585334649309!GO:0046164;alcohol catabolic process;0.0429293655010929!GO:0008429;phosphatidylethanolamine binding;0.0433826429980276!GO:0007611;learning and/or memory;0.0436932294126105!GO:0044448;cell cortex part;0.0438851071016631!GO:0006520;amino acid metabolic process;0.0446818836013824!GO:0030139;endocytic vesicle;0.044772183946568!GO:0051252;regulation of RNA metabolic process;0.0455957153063549!GO:0031371;ubiquitin conjugating enzyme complex;0.0455957153063549!GO:0009308;amine metabolic process;0.0465230116594579!GO:0005100;Rho GTPase activator activity;0.0465495012256652!GO:0045454;cell redox homeostasis;0.0467554263699417!GO:0008088;axon cargo transport;0.047553336736827!GO:0046489;phosphoinositide biosynthetic process;0.0477037869941495!GO:0016049;cell growth;0.0480556006141085!GO:0030641;cellular hydrogen ion homeostasis;0.0491842130186903
|sample_id=10084
|sample_id=10084
|sample_note=
|sample_note=
Line 76: Line 100:
|sample_tissue=brain
|sample_tissue=brain
|top_motifs=REST:4.3503546587;ZBTB6:3.82433215092;EGR1..3:3.70487202668;NHLH1,2:3.56479657339;TFAP2B:3.477414159;PAX5:3.36818481581;MTF1:3.34974381291;MYFfamily:3.11249709878;HIC1:3.09095010079;MED-1{core}:3.03743370246;ZFP161:3.03626490677;CUX2:2.95114010298;ZNF423:2.93427850358;MTE{core}:2.88836541787;AHR_ARNT_ARNT2:2.76992453976;HOXA9_MEIS1:2.7494335622;RREB1:2.61186013866;FOXM1:2.60205797683;NFIX:2.5552244865;GTF2I:2.4872091493;ATF2:2.47669292202;LMO2:2.44116316952;GCM1,2:2.36872753776;PAX6:2.26373078389;PATZ1:2.20236559689;RFX1:2.19601036613;PRRX1,2:2.09203583432;OCT4_SOX2{dimer}:2.06730339908;MZF1:2.06644230426;XBP1:2.03471790019;DBP:2.00683259992;SMAD1..7,9:1.98148895802;SOX5:1.98002841595;TFDP1:1.96602385506;RBPJ:1.92417059041;JUN:1.91613555331;GFI1B:1.89410455424;BREu{core}:1.81197271519;MAZ:1.77772169264;POU5F1:1.77685527796;EBF1:1.73007703462;SOX2:1.70893665957;POU6F1:1.69420929963;TFAP2{A,C}:1.67800847664;SOX{8,9,10}:1.6693952768;FOX{F1,F2,J1}:1.5986809424;GTF2A1,2:1.57295691108;ZNF384:1.55388537172;NANOG:1.49643105709;MYOD1:1.49611926582;PRDM1:1.47150709915;KLF4:1.43750002463;MAFB:1.32344913775;SOX17:1.29305770275;HOX{A4,D4}:1.26805982154;NFIL3:1.26544397214;ARID5B:1.20453301556;POU3F1..4:1.20095549868;RFX2..5_RFXANK_RFXAP:1.15783308763;TGIF1:1.14940736165;EP300:1.14048154771;SP1:1.1099788051;FOXP1:1.07208385603;RORA:1.0452107451;LEF1_TCF7_TCF7L1,2:1.0320304283;bHLH_family:0.930432056132;HNF1A:0.905139493333;GATA4:0.903185352335;ZEB1:0.890727734752;FOXQ1:0.869398134967;ZIC1..3:0.859425455885;ESRRA:0.858942891467;HMGA1,2:0.857240584418;LHX3,4:0.817572163191;CREB1:0.80876202093;NRF1:0.78630132123;NKX3-2:0.784653870994;HAND1,2:0.784634470647;ONECUT1,2:0.729482223414;HNF4A_NR2F1,2:0.728852477359;HOX{A6,A7,B6,B7}:0.727643026458;YY1:0.714941039414;SPZ1:0.66978500711;NR3C1:0.665754854362;NKX2-3_NKX2-5:0.660149142063;XCPE1{core}:0.639513846823;SREBF1,2:0.548753318896;MEF2{A,B,C,D}:0.500435680284;ZNF143:0.463547611718;CDC5L:0.435271399588;FOX{D1,D2}:0.418554224321;ESR1:0.418354065753;GZF1:0.409569948191;IKZF2:0.389352272173;TLX1..3_NFIC{dimer}:0.380274676884;NKX6-1,2:0.377299175391;NFE2L1:0.361715046396;ZNF238:0.320165950198;AR:0.314236921261;ATF4:0.303759021722;FOXL1:0.289594486991;CRX:0.274156700622;ADNP_IRX_SIX_ZHX:0.239742549265;MYBL2:0.130967980867;RXR{A,B,G}:0.126660142185;TBX4,5:0.117060620596;UFEwm:0.064321931259;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.030800907528;TOPORS:0.00910113744791;NR5A1,2:0.00868760378158;GFI1:-0.0232663857601;ATF5_CREB3:-0.0339917646823;STAT1,3:-0.0340933767413;TFCP2:-0.0377939722767;PAX2:-0.0441796666633;STAT2,4,6:-0.116965239874;CEBPA,B_DDIT3:-0.183131465402;SNAI1..3:-0.185071442863;PITX1..3:-0.191106589706;ZNF148:-0.199883735344;TLX2:-0.204137410799;TFAP4:-0.216238184205;IKZF1:-0.221625778963;NFE2L2:-0.223293311658;NFY{A,B,C}:-0.235839561631;VSX1,2:-0.289623658623;PBX1:-0.300518724296;NR1H4:-0.353295167916;HBP1_HMGB_SSRP1_UBTF:-0.390656717492;BPTF:-0.412517828879;HMX1:-0.459237776148;PDX1:-0.47253643629;FOXD3:-0.508567122764;PAX1,9:-0.529123330767;GATA6:-0.540011435862;NANOG{mouse}:-0.565164344479;PAX3,7:-0.583123291139;SPI1:-0.589317104768;POU1F1:-0.599526698249;FOXA2:-0.612019954085;GLI1..3:-0.626481527559;ATF6:-0.64666937057;IRF7:-0.681285144033;NFE2:-0.691516283336;TBP:-0.740397882313;IRF1,2:-0.776183740694;TEF:-0.777697776275;TP53:-0.834014293664;RUNX1..3:-0.920520157715;SPIB:-0.926283802569;PAX4:-0.926653027569;ETS1,2:-0.936309870385;TAL1_TCF{3,4,12}:-0.950878324716;FOXN1:-0.96627618091;DMAP1_NCOR{1,2}_SMARC:-1.00159701622;FOXP3:-1.03000956639;BACH2:-1.06230090962;T:-1.0832639331;ALX4:-1.08737776685;PPARG:-1.09919088014;TEAD1:-1.11361047507;FOS_FOS{B,L1}_JUN{B,D}:-1.1364686916;FOSL2:-1.151939988;RXRA_VDR{dimer}:-1.1555125867;FOXO1,3,4:-1.1595684668;HSF1,2:-1.17933999065;NFKB1_REL_RELA:-1.21707131548;HLF:-1.22363458135;FOX{I1,J2}:-1.25039529392;SRF:-1.27867400511;PAX8:-1.31325380022;STAT5{A,B}:-1.39110511132;ALX1:-1.39988030624;HES1:-1.41928809784;E2F1..5:-1.44906149538;NFATC1..3:-1.488518604;POU2F1..3:-1.50831263917;HIF1A:-1.52413088808;EVI1:-1.61651347443;NR6A1:-1.64546565762;NKX2-1,4:-1.66273511123;ELK1,4_GABP{A,B1}:-1.67860536426;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.71217664291;NKX2-2,8:-1.75252333523;AIRE:-2.04104992671;MYB:-2.06475116095;EN1,2:-2.09836902825;ELF1,2,4:-2.10977355278;ZBTB16:-2.28156995797;CDX1,2,4:-2.32990322285;NKX3-1:-2.37053267203;HOX{A5,B5}:-2.56847072626
|top_motifs=REST:4.3503546587;ZBTB6:3.82433215092;EGR1..3:3.70487202668;NHLH1,2:3.56479657339;TFAP2B:3.477414159;PAX5:3.36818481581;MTF1:3.34974381291;MYFfamily:3.11249709878;HIC1:3.09095010079;MED-1{core}:3.03743370246;ZFP161:3.03626490677;CUX2:2.95114010298;ZNF423:2.93427850358;MTE{core}:2.88836541787;AHR_ARNT_ARNT2:2.76992453976;HOXA9_MEIS1:2.7494335622;RREB1:2.61186013866;FOXM1:2.60205797683;NFIX:2.5552244865;GTF2I:2.4872091493;ATF2:2.47669292202;LMO2:2.44116316952;GCM1,2:2.36872753776;PAX6:2.26373078389;PATZ1:2.20236559689;RFX1:2.19601036613;PRRX1,2:2.09203583432;OCT4_SOX2{dimer}:2.06730339908;MZF1:2.06644230426;XBP1:2.03471790019;DBP:2.00683259992;SMAD1..7,9:1.98148895802;SOX5:1.98002841595;TFDP1:1.96602385506;RBPJ:1.92417059041;JUN:1.91613555331;GFI1B:1.89410455424;BREu{core}:1.81197271519;MAZ:1.77772169264;POU5F1:1.77685527796;EBF1:1.73007703462;SOX2:1.70893665957;POU6F1:1.69420929963;TFAP2{A,C}:1.67800847664;SOX{8,9,10}:1.6693952768;FOX{F1,F2,J1}:1.5986809424;GTF2A1,2:1.57295691108;ZNF384:1.55388537172;NANOG:1.49643105709;MYOD1:1.49611926582;PRDM1:1.47150709915;KLF4:1.43750002463;MAFB:1.32344913775;SOX17:1.29305770275;HOX{A4,D4}:1.26805982154;NFIL3:1.26544397214;ARID5B:1.20453301556;POU3F1..4:1.20095549868;RFX2..5_RFXANK_RFXAP:1.15783308763;TGIF1:1.14940736165;EP300:1.14048154771;SP1:1.1099788051;FOXP1:1.07208385603;RORA:1.0452107451;LEF1_TCF7_TCF7L1,2:1.0320304283;bHLH_family:0.930432056132;HNF1A:0.905139493333;GATA4:0.903185352335;ZEB1:0.890727734752;FOXQ1:0.869398134967;ZIC1..3:0.859425455885;ESRRA:0.858942891467;HMGA1,2:0.857240584418;LHX3,4:0.817572163191;CREB1:0.80876202093;NRF1:0.78630132123;NKX3-2:0.784653870994;HAND1,2:0.784634470647;ONECUT1,2:0.729482223414;HNF4A_NR2F1,2:0.728852477359;HOX{A6,A7,B6,B7}:0.727643026458;YY1:0.714941039414;SPZ1:0.66978500711;NR3C1:0.665754854362;NKX2-3_NKX2-5:0.660149142063;XCPE1{core}:0.639513846823;SREBF1,2:0.548753318896;MEF2{A,B,C,D}:0.500435680284;ZNF143:0.463547611718;CDC5L:0.435271399588;FOX{D1,D2}:0.418554224321;ESR1:0.418354065753;GZF1:0.409569948191;IKZF2:0.389352272173;TLX1..3_NFIC{dimer}:0.380274676884;NKX6-1,2:0.377299175391;NFE2L1:0.361715046396;ZNF238:0.320165950198;AR:0.314236921261;ATF4:0.303759021722;FOXL1:0.289594486991;CRX:0.274156700622;ADNP_IRX_SIX_ZHX:0.239742549265;MYBL2:0.130967980867;RXR{A,B,G}:0.126660142185;TBX4,5:0.117060620596;UFEwm:0.064321931259;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.030800907528;TOPORS:0.00910113744791;NR5A1,2:0.00868760378158;GFI1:-0.0232663857601;ATF5_CREB3:-0.0339917646823;STAT1,3:-0.0340933767413;TFCP2:-0.0377939722767;PAX2:-0.0441796666633;STAT2,4,6:-0.116965239874;CEBPA,B_DDIT3:-0.183131465402;SNAI1..3:-0.185071442863;PITX1..3:-0.191106589706;ZNF148:-0.199883735344;TLX2:-0.204137410799;TFAP4:-0.216238184205;IKZF1:-0.221625778963;NFE2L2:-0.223293311658;NFY{A,B,C}:-0.235839561631;VSX1,2:-0.289623658623;PBX1:-0.300518724296;NR1H4:-0.353295167916;HBP1_HMGB_SSRP1_UBTF:-0.390656717492;BPTF:-0.412517828879;HMX1:-0.459237776148;PDX1:-0.47253643629;FOXD3:-0.508567122764;PAX1,9:-0.529123330767;GATA6:-0.540011435862;NANOG{mouse}:-0.565164344479;PAX3,7:-0.583123291139;SPI1:-0.589317104768;POU1F1:-0.599526698249;FOXA2:-0.612019954085;GLI1..3:-0.626481527559;ATF6:-0.64666937057;IRF7:-0.681285144033;NFE2:-0.691516283336;TBP:-0.740397882313;IRF1,2:-0.776183740694;TEF:-0.777697776275;TP53:-0.834014293664;RUNX1..3:-0.920520157715;SPIB:-0.926283802569;PAX4:-0.926653027569;ETS1,2:-0.936309870385;TAL1_TCF{3,4,12}:-0.950878324716;FOXN1:-0.96627618091;DMAP1_NCOR{1,2}_SMARC:-1.00159701622;FOXP3:-1.03000956639;BACH2:-1.06230090962;T:-1.0832639331;ALX4:-1.08737776685;PPARG:-1.09919088014;TEAD1:-1.11361047507;FOS_FOS{B,L1}_JUN{B,D}:-1.1364686916;FOSL2:-1.151939988;RXRA_VDR{dimer}:-1.1555125867;FOXO1,3,4:-1.1595684668;HSF1,2:-1.17933999065;NFKB1_REL_RELA:-1.21707131548;HLF:-1.22363458135;FOX{I1,J2}:-1.25039529392;SRF:-1.27867400511;PAX8:-1.31325380022;STAT5{A,B}:-1.39110511132;ALX1:-1.39988030624;HES1:-1.41928809784;E2F1..5:-1.44906149538;NFATC1..3:-1.488518604;POU2F1..3:-1.50831263917;HIF1A:-1.52413088808;EVI1:-1.61651347443;NR6A1:-1.64546565762;NKX2-1,4:-1.66273511123;ELK1,4_GABP{A,B1}:-1.67860536426;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.71217664291;NKX2-2,8:-1.75252333523;AIRE:-2.04104992671;MYB:-2.06475116095;EN1,2:-2.09836902825;ELF1,2,4:-2.10977355278;ZBTB16:-2.28156995797;CDX1,2,4:-2.32990322285;NKX3-1:-2.37053267203;HOX{A5,B5}:-2.56847072626
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10084-102B3;search_select_hide=table117:FF:10084-102B3
}}
}}

Latest revision as of 12:20, 3 June 2020

Name:brain, adult, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11796
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebrain
dev stage18 years old adult
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number8101369A-4
catalog numberCat: 636643 Lot: 8101369A-4
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005459
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11796 CAGE DRX008625 DRR009497
Accession ID Hg19

Library idBAMCTSS
CNhs11796 DRZ000922 DRZ002307
Accession ID Hg38

Library idBAMCTSS
CNhs11796 DRZ012272 DRZ013657
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.294
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.647
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.449
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.468
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.087
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.294
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.294
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.00643
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.591
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.00414
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0774
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.782
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.294
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.468
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.294
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0902
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.468
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0.294
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.572
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.294
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.767
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.294
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.688
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.468
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11796

Jaspar motifP-value
MA0002.20.00513
MA0003.10.48
MA0004.10.451
MA0006.10.533
MA0007.10.323
MA0009.10.154
MA0014.10.485
MA0017.10.0563
MA0018.20.0515
MA0019.10.944
MA0024.10.735
MA0025.10.252
MA0027.10.617
MA0028.10.0146
MA0029.10.143
MA0030.10.117
MA0031.10.97
MA0035.20.188
MA0038.10.158
MA0039.20.14
MA0040.10.315
MA0041.10.608
MA0042.10.854
MA0043.10.566
MA0046.10.141
MA0047.20.338
MA0048.10.0919
MA0050.16.34201e-5
MA0051.10.0271
MA0052.10.207
MA0055.10.00103
MA0057.10.929
MA0058.10.364
MA0059.10.0772
MA0060.10.577
MA0061.10.00316
MA0062.25.14582e-4
MA0065.20.00785
MA0066.10.045
MA0067.10.779
MA0068.10.113
MA0069.10.454
MA0070.10.025
MA0071.10.11
MA0072.10.602
MA0073.10.563
MA0074.10.355
MA0076.10.0197
MA0077.10.188
MA0078.10.977
MA0079.20.311
MA0080.27.82445e-9
MA0081.10.0135
MA0083.10.154
MA0084.10.291
MA0087.10.545
MA0088.10.133
MA0090.10.289
MA0091.10.597
MA0092.10.383
MA0093.10.455
MA0099.21.93854e-16
MA0100.10.135
MA0101.11.96213e-4
MA0102.20.0215
MA0103.10.404
MA0104.20.404
MA0105.11.18176e-4
MA0106.10.0194
MA0107.18.80354e-4
MA0108.20.215
MA0111.10.454
MA0112.20.00219
MA0113.10.465
MA0114.10.0444
MA0115.10.846
MA0116.10.00243
MA0117.10.895
MA0119.10.0667
MA0122.10.473
MA0124.10.848
MA0125.10.173
MA0131.10.608
MA0135.17.78804e-4
MA0136.13.9914e-13
MA0137.20.177
MA0138.20.0248
MA0139.10.479
MA0140.10.0107
MA0141.10.153
MA0142.10.704
MA0143.10.657
MA0144.10.323
MA0145.10.265
MA0146.10.0248
MA0147.10.278
MA0148.10.235
MA0149.10.0112
MA0150.16.85372e-5
MA0152.10.561
MA0153.10.157
MA0154.10.0368
MA0155.10.935
MA0156.12.19081e-9
MA0157.10.633
MA0159.10.0256
MA0160.10.0968
MA0162.10.172
MA0163.11.36054e-6
MA0164.10.858
MA0258.10.0579
MA0259.10.602



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11796

Novel motifP-value
10.0371
100.0171
1000.35
1010.866
1020.669
1030.0894
1040.173
1050.356
1060.148
1070.192
1080.887
1090.00905
110.0223
1100.0273
1110.158
1120.443
1130.535
1140.106
1150.654
1160.382
1170.00522
1180.107
1190.405
120.719
1200.139
1210.612
1220.509
1230.854
1240.0284
1250.325
1260.0163
1270.371
1280.391
1290.881
134.29961e-4
1300.282
1310.155
1320.316
1330.00461
1340.605
1350.265
1360.00794
1370.359
1380.821
1390.17
140.93
1400.375
1410.302
1420.898
1430.0086
1440.964
1450.12
1460.386
1470.851
1480.187
1490.736
150.0475
1500.136
1510.767
1520.227
1530.499
1540.499
1550.483
1560.893
1570.264
1580.395
1590.435
160.0675
1600.269
1610.188
1620.889
1630.738
1640.0155
1650.0534
1660.988
1670.344
1680.631
1690.0131
170.192
180.168
190.343
20.777
200.0709
210.0781
220.316
230.503
240.05
250.311
265.47113e-5
270.924
280.551
290.00338
30.0106
300.512
310.926
320.079
330.0473
340.962
350.565
360.121
370.0441
380.364
390.309
40.914
400.095
410.313
420.0937
430.0968
440.471
450.895
460.069
470.0878
480.0606
490.183
50.361
500.325
510.531
520.878
530.67
540.567
550.444
560.54
570.231
580.293
590.245
60.524
600.0993
610.0443
620.164
630.225
640.247
650.443
660.115
670.297
680.583
690.689
70.0267
700.0355
710.00431
720.299
730.0621
740.517
750.0201
760.244
770.432
780.00174
790.457
80.0964
800.611
810.578
820.566
830.0681
840.744
850.542
860.172
870.0191
880.892
890.63
90.461
900.0207
910.391
920.555
930.841
940.05
950.0212
960.942
970.73
980.316
990.941



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11796


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010012 (human brain - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)

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