FF:10083-102B2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005358 | ||
|accession_numbers=CAGE;DRX008633;DRR009505;DRZ000930;DRZ002315;DRZ012280;DRZ013665 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002037,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002680,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001895,UBERON:0002028 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010083 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520pool1.CNhs11795.10083-102B2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520pool1.CNhs11795.10083-102B2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520pool1.CNhs11795.10083-102B2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520pool1.CNhs11795.10083-102B2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520pool1.CNhs11795.10083-102B2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10083-102B2 | |id=FF:10083-102B2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010083 | ||
|is_obsolete= | |||
|library_id=CNhs11795 | |||
|library_id_phase_based=2:CNhs11795 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10083 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10083 | |||
|name=cerebellum, adult, pool1 | |name=cerebellum, adult, pool1 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11795,LSID820,release009,COMPLETED | |profile_hcage=CNhs11795,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|rna_box=102 | |rna_box=102 | ||
|rna_catalog_number=Cat: 636643 Lot: 8101369A-3 | |rna_catalog_number=Cat: 636643 Lot: 8101369A-3 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.55106082790102e-245!GO:0005737;cytoplasm;8.43907103073647e-151!GO:0043226;organelle;8.70572594525163e-126!GO:0043229;intracellular organelle;4.08927789243062e-125!GO:0043227;membrane-bound organelle;3.08333182444795e-121!GO:0043231;intracellular membrane-bound organelle;4.67312884550437e-121!GO:0044444;cytoplasmic part;1.30890204465913e-108!GO:0044422;organelle part;7.22723836360357e-77!GO:0044446;intracellular organelle part;1.18594420319681e-75!GO:0032991;macromolecular complex;2.97114768272198e-68!GO:0005515;protein binding;1.34318212057439e-52!GO:0030529;ribonucleoprotein complex;2.72043512513537e-49!GO:0005739;mitochondrion;2.045885185831e-48!GO:0003723;RNA binding;1.02363523450114e-44!GO:0016043;cellular component organization and biogenesis;9.32830874549715e-43!GO:0033036;macromolecule localization;2.89948719143794e-41!GO:0015031;protein transport;9.67419984936482e-41!GO:0031090;organelle membrane;1.66972796864323e-40!GO:0008104;protein localization;9.52806479688689e-38!GO:0043234;protein complex;3.27354902805908e-37!GO:0045184;establishment of protein localization;5.38278614260035e-37!GO:0043233;organelle lumen;3.89706320569067e-36!GO:0031974;membrane-enclosed lumen;3.89706320569067e-36!GO:0044237;cellular metabolic process;5.68391941262967e-36!GO:0044238;primary metabolic process;6.53910618879871e-36!GO:0005634;nucleus;2.35257124582983e-35!GO:0044428;nuclear part;2.39966238506453e-35!GO:0044429;mitochondrial part;6.51479285084969e-34!GO:0043170;macromolecule metabolic process;1.32946446798657e-33!GO:0005840;ribosome;2.35300385387784e-30!GO:0046907;intracellular transport;2.76338538029897e-30!GO:0031975;envelope;9.53094796228172e-30!GO:0031967;organelle envelope;9.53094796228172e-30!GO:0016071;mRNA metabolic process;1.60391520030967e-27!GO:0051649;establishment of cellular localization;3.7412284391802e-27!GO:0051641;cellular localization;7.5272064051762e-27!GO:0006396;RNA processing;3.50589144507407e-26!GO:0003735;structural constituent of ribosome;8.11261823199678e-26!GO:0019538;protein metabolic process;9.8766990134006e-26!GO:0005829;cytosol;1.24089861179533e-25!GO:0016192;vesicle-mediated transport;2.09894092357796e-25!GO:0006886;intracellular protein transport;7.56908409932395e-25!GO:0008380;RNA splicing;1.37728517662331e-24!GO:0006412;translation;1.38094442641684e-23!GO:0006119;oxidative phosphorylation;1.46286702219906e-23!GO:0005740;mitochondrial envelope;8.1467249174819e-23!GO:0031966;mitochondrial membrane;8.43486788019676e-23!GO:0044260;cellular macromolecule metabolic process;1.76397378316508e-22!GO:0006397;mRNA processing;1.96068628090504e-22!GO:0019866;organelle inner membrane;1.96068628090504e-22!GO:0033279;ribosomal subunit;2.99116084511911e-22!GO:0044267;cellular protein metabolic process;4.6363050772842e-22!GO:0065003;macromolecular complex assembly;4.48590235384245e-21!GO:0005743;mitochondrial inner membrane;6.692773800015e-21!GO:0005794;Golgi apparatus;1.93364028090118e-20!GO:0031981;nuclear lumen;2.34970089855081e-20!GO:0006996;organelle organization and biogenesis;5.08201033351308e-20!GO:0043283;biopolymer metabolic process;9.83590658121011e-20!GO:0022607;cellular component assembly;4.0175299393027e-19!GO:0009058;biosynthetic process;4.09375564937862e-19!GO:0009059;macromolecule biosynthetic process;1.03240326908483e-18!GO:0044455;mitochondrial membrane part;1.88752515878377e-18!GO:0010467;gene expression;1.34572965518314e-17!GO:0005746;mitochondrial respiratory chain;1.83167514035833e-17!GO:0031982;vesicle;8.53622771369595e-17!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.53622771369595e-17!GO:0005681;spliceosome;2.24875952315755e-16!GO:0044249;cellular biosynthetic process;2.43234423373909e-16!GO:0012505;endomembrane system;3.73990473949572e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.74779736048906e-16!GO:0003954;NADH dehydrogenase activity;3.74779736048906e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.74779736048906e-16!GO:0031410;cytoplasmic vesicle;4.45205606412445e-16!GO:0044445;cytosolic part;5.41917965685914e-16!GO:0006512;ubiquitin cycle;5.85176840251543e-16!GO:0031988;membrane-bound vesicle;1.29706084274243e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.90897872909334e-15!GO:0016023;cytoplasmic membrane-bound vesicle;6.11742817387299e-15!GO:0000166;nucleotide binding;2.15538439164629e-14!GO:0030964;NADH dehydrogenase complex (quinone);5.18005143752322e-14!GO:0045271;respiratory chain complex I;5.18005143752322e-14!GO:0005747;mitochondrial respiratory chain complex I;5.18005143752322e-14!GO:0005654;nucleoplasm;6.4769475177874e-14!GO:0042775;organelle ATP synthesis coupled electron transport;7.36469738662675e-14!GO:0042773;ATP synthesis coupled electron transport;7.36469738662675e-14!GO:0031980;mitochondrial lumen;7.36469738662675e-14!GO:0005759;mitochondrial matrix;7.36469738662675e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.11560382620659e-14!GO:0016462;pyrophosphatase activity;1.24889219301125e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;1.35356875986537e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.55475529924525e-13!GO:0017111;nucleoside-triphosphatase activity;3.19393885523209e-13!GO:0016874;ligase activity;5.37798644524318e-13!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.1633176522352e-12!GO:0045045;secretory pathway;1.20112121747041e-12!GO:0044451;nucleoplasm part;1.23996350947549e-12!GO:0006457;protein folding;1.86169596810365e-12!GO:0048193;Golgi vesicle transport;2.44823000378627e-12!GO:0008135;translation factor activity, nucleic acid binding;2.67535278443198e-12!GO:0015935;small ribosomal subunit;7.78812757222734e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.97259583187738e-11!GO:0043412;biopolymer modification;2.08815510295534e-11!GO:0044265;cellular macromolecule catabolic process;2.16499236235181e-11!GO:0048770;pigment granule;2.19662608572254e-11!GO:0042470;melanosome;2.19662608572254e-11!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.39290693417931e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;2.51763686204066e-11!GO:0015934;large ribosomal subunit;2.57064000190839e-11!GO:0022618;protein-RNA complex assembly;2.9681103016186e-11!GO:0019829;cation-transporting ATPase activity;3.05911148749317e-11!GO:0019941;modification-dependent protein catabolic process;3.06881035102653e-11!GO:0043632;modification-dependent macromolecule catabolic process;3.06881035102653e-11!GO:0044431;Golgi apparatus part;3.29760721125035e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.22981767037599e-11!GO:0044257;cellular protein catabolic process;7.22981767037599e-11!GO:0051082;unfolded protein binding;9.22928672196461e-11!GO:0006464;protein modification process;1.30155703902174e-10!GO:0043228;non-membrane-bound organelle;1.35090623315923e-10!GO:0043232;intracellular non-membrane-bound organelle;1.35090623315923e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.57207954271958e-10!GO:0043687;post-translational protein modification;2.49153606821292e-10!GO:0008565;protein transporter activity;4.70892330416259e-10!GO:0006605;protein targeting;5.63465755262105e-10!GO:0032553;ribonucleotide binding;8.91170287162367e-10!GO:0032555;purine ribonucleotide binding;8.91170287162367e-10!GO:0030135;coated vesicle;1.04526142828341e-09!GO:0006810;transport;1.64215118528181e-09!GO:0051186;cofactor metabolic process;2.21383215015622e-09!GO:0043285;biopolymer catabolic process;2.92857177833903e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.03505384760309e-09!GO:0044248;cellular catabolic process;3.09715182402225e-09!GO:0017076;purine nucleotide binding;4.30498264489661e-09!GO:0016604;nuclear body;4.31110209656857e-09!GO:0030163;protein catabolic process;5.00228091915528e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;6.05914794729121e-09!GO:0009057;macromolecule catabolic process;6.20411106832862e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.53111241535022e-09!GO:0015986;ATP synthesis coupled proton transport;7.94280520604442e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.94280520604442e-09!GO:0008134;transcription factor binding;8.22088957293156e-09!GO:0000502;proteasome complex (sensu Eukaryota);1.11024454623469e-08!GO:0016607;nuclear speck;1.30034224108471e-08!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.69563837598572e-08!GO:0005783;endoplasmic reticulum;2.01408311596701e-08!GO:0032940;secretion by cell;2.030323733198e-08!GO:0000139;Golgi membrane;2.66530429179721e-08!GO:0031965;nuclear membrane;3.09316585539956e-08!GO:0003924;GTPase activity;3.4931062796034e-08!GO:0008639;small protein conjugating enzyme activity;3.66745756473175e-08!GO:0003743;translation initiation factor activity;3.71148718971216e-08!GO:0003676;nucleic acid binding;3.88430205661483e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;3.93075954388156e-08!GO:0000375;RNA splicing, via transesterification reactions;3.93075954388156e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.93075954388156e-08!GO:0006323;DNA packaging;4.92647277798165e-08!GO:0004842;ubiquitin-protein ligase activity;5.64223618541513e-08!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.7818694028145e-08!GO:0005761;mitochondrial ribosome;5.9747217170172e-08!GO:0000313;organellar ribosome;5.9747217170172e-08!GO:0006461;protein complex assembly;7.84905719524621e-08!GO:0006913;nucleocytoplasmic transport;8.08697870575441e-08!GO:0005635;nuclear envelope;9.66094699836582e-08!GO:0006259;DNA metabolic process;1.17215131782239e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.25152243896855e-07!GO:0019787;small conjugating protein ligase activity;1.40519625247318e-07!GO:0009060;aerobic respiration;1.40955370194255e-07!GO:0006732;coenzyme metabolic process;1.50835506389988e-07!GO:0016070;RNA metabolic process;1.61327242943416e-07!GO:0005768;endosome;1.64426107309066e-07!GO:0051169;nuclear transport;1.67818684022179e-07!GO:0006413;translational initiation;1.67818684022179e-07!GO:0007264;small GTPase mediated signal transduction;1.82529395906125e-07!GO:0006446;regulation of translational initiation;2.10693413498859e-07!GO:0051234;establishment of localization;2.72959587078018e-07!GO:0006754;ATP biosynthetic process;3.30222265156483e-07!GO:0006753;nucleoside phosphate metabolic process;3.30222265156483e-07!GO:0045333;cellular respiration;3.35149805661111e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.72727256719083e-07!GO:0015631;tubulin binding;3.78366944515504e-07!GO:0006793;phosphorus metabolic process;6.81618117876422e-07!GO:0006796;phosphate metabolic process;6.81618117876422e-07!GO:0016469;proton-transporting two-sector ATPase complex;6.84327247498678e-07!GO:0008287;protein serine/threonine phosphatase complex;8.54907739584089e-07!GO:0046034;ATP metabolic process;9.22343659713412e-07!GO:0016044;membrane organization and biogenesis;9.79362311639695e-07!GO:0048475;coated membrane;1.0990838464507e-06!GO:0030117;membrane coat;1.0990838464507e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.34459769818582e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.34459769818582e-06!GO:0009055;electron carrier activity;1.7437835381913e-06!GO:0051179;localization;1.7437835381913e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.99967962761154e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.99967962761154e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.020849572727e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.020849572727e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.22964428799037e-06!GO:0009141;nucleoside triphosphate metabolic process;2.36139404577179e-06!GO:0005525;GTP binding;2.45546884856149e-06!GO:0030136;clathrin-coated vesicle;2.50950515477376e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.77751471319592e-06!GO:0016568;chromatin modification;3.19931634564263e-06!GO:0019717;synaptosome;3.63507406161429e-06!GO:0016881;acid-amino acid ligase activity;4.02043350551738e-06!GO:0008017;microtubule binding;4.25676038070568e-06!GO:0032559;adenyl ribonucleotide binding;4.34797765764282e-06!GO:0045259;proton-transporting ATP synthase complex;4.35217196065675e-06!GO:0006163;purine nucleotide metabolic process;4.38565690810346e-06!GO:0009150;purine ribonucleotide metabolic process;4.40396654809152e-06!GO:0016887;ATPase activity;4.47383408265811e-06!GO:0008092;cytoskeletal protein binding;4.62423969409641e-06!GO:0009152;purine ribonucleotide biosynthetic process;5.03043285672329e-06!GO:0006164;purine nucleotide biosynthetic process;5.33924451487212e-06!GO:0005905;coated pit;5.85191190286971e-06!GO:0042623;ATPase activity, coupled;6.09328619830379e-06!GO:0005083;small GTPase regulator activity;6.22668884231242e-06!GO:0009056;catabolic process;7.71948098155067e-06!GO:0006099;tricarboxylic acid cycle;8.14189187622517e-06!GO:0046356;acetyl-CoA catabolic process;8.14189187622517e-06!GO:0005524;ATP binding;8.160558653472e-06!GO:0006403;RNA localization;8.51265065305742e-06!GO:0044432;endoplasmic reticulum part;8.78508744541447e-06!GO:0022890;inorganic cation transmembrane transporter activity;1.01569953713308e-05!GO:0006333;chromatin assembly or disassembly;1.06719404694763e-05!GO:0009109;coenzyme catabolic process;1.17485820357933e-05!GO:0044453;nuclear membrane part;1.2350338374382e-05!GO:0030695;GTPase regulator activity;1.25729658387369e-05!GO:0007010;cytoskeleton organization and biogenesis;1.25729658387369e-05!GO:0015630;microtubule cytoskeleton;1.25729658387369e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.37703133847957e-05!GO:0015399;primary active transmembrane transporter activity;1.37703133847957e-05!GO:0017038;protein import;1.42753745293426e-05!GO:0005730;nucleolus;1.4481758769684e-05!GO:0050657;nucleic acid transport;1.48202057842949e-05!GO:0051236;establishment of RNA localization;1.48202057842949e-05!GO:0050658;RNA transport;1.48202057842949e-05!GO:0019899;enzyme binding;1.50203960299181e-05!GO:0048471;perinuclear region of cytoplasm;1.57596879673054e-05!GO:0030554;adenyl nucleotide binding;1.6683437623204e-05!GO:0005769;early endosome;1.73309450699206e-05!GO:0003712;transcription cofactor activity;1.78255271275527e-05!GO:0005798;Golgi-associated vesicle;2.20049914980405e-05!GO:0009259;ribonucleotide metabolic process;2.40193751207183e-05!GO:0006752;group transfer coenzyme metabolic process;2.47677808157396e-05!GO:0051188;cofactor biosynthetic process;2.73794483320229e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.79217177823786e-05!GO:0006084;acetyl-CoA metabolic process;2.98397983227097e-05!GO:0051276;chromosome organization and biogenesis;2.98782807138224e-05!GO:0032446;protein modification by small protein conjugation;3.03766154653109e-05!GO:0043005;neuron projection;3.12151132463067e-05!GO:0032561;guanyl ribonucleotide binding;3.3242340530927e-05!GO:0019001;guanyl nucleotide binding;3.3242340530927e-05!GO:0016310;phosphorylation;3.75632299569776e-05!GO:0030120;vesicle coat;4.16397799148755e-05!GO:0030662;coated vesicle membrane;4.16397799148755e-05!GO:0009260;ribonucleotide biosynthetic process;5.05018970983007e-05!GO:0044440;endosomal part;5.21430686208774e-05!GO:0010008;endosome membrane;5.21430686208774e-05!GO:0005643;nuclear pore;5.30748266893167e-05!GO:0051187;cofactor catabolic process;5.59402129544534e-05!GO:0043492;ATPase activity, coupled to movement of substances;5.79143402062756e-05!GO:0005770;late endosome;6.08448309571295e-05!GO:0005874;microtubule;7.04405996694368e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;7.28052474088923e-05!GO:0016567;protein ubiquitination;7.72966447959347e-05!GO:0051128;regulation of cellular component organization and biogenesis;8.65497875485742e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000105239250185702!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000116187791007572!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000124536585285122!GO:0006897;endocytosis;0.000124971857363152!GO:0010324;membrane invagination;0.000124971857363152!GO:0005789;endoplasmic reticulum membrane;0.000126610818401081!GO:0008654;phospholipid biosynthetic process;0.000135322094885544!GO:0030532;small nuclear ribonucleoprotein complex;0.000136397877895003!GO:0005793;ER-Golgi intermediate compartment;0.000154441255040652!GO:0051028;mRNA transport;0.000212656501530899!GO:0009108;coenzyme biosynthetic process;0.000233594124003246!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00023509726103322!GO:0000245;spliceosome assembly;0.000238478411326766!GO:0000151;ubiquitin ligase complex;0.000249168514064779!GO:0046467;membrane lipid biosynthetic process;0.000255017590238556!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000281567112601042!GO:0006888;ER to Golgi vesicle-mediated transport;0.000310912891982038!GO:0030118;clathrin coat;0.000319934818357926!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00032066295917106!GO:0030029;actin filament-based process;0.000324172405451212!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000324682749855363!GO:0048489;synaptic vesicle transport;0.000329691011987234!GO:0016197;endosome transport;0.000333320369154485!GO:0007399;nervous system development;0.0003595584240099!GO:0006613;cotranslational protein targeting to membrane;0.000409364027534175!GO:0043623;cellular protein complex assembly;0.000439533579870722!GO:0006650;glycerophospholipid metabolic process;0.000446705910899661!GO:0005773;vacuole;0.000455480581281572!GO:0006414;translational elongation;0.000456264423001835!GO:0031252;leading edge;0.000458005666326582!GO:0030425;dendrite;0.000460001594802941!GO:0043566;structure-specific DNA binding;0.000460001594802941!GO:0003746;translation elongation factor activity;0.000471504394192248!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000510521736665636!GO:0004812;aminoacyl-tRNA ligase activity;0.000510521736665636!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000510521736665636!GO:0015980;energy derivation by oxidation of organic compounds;0.000532480378975732!GO:0008021;synaptic vesicle;0.000549690166049405!GO:0003697;single-stranded DNA binding;0.000598113822929864!GO:0006606;protein import into nucleus;0.000601891543865352!GO:0065004;protein-DNA complex assembly;0.000604567961705235!GO:0051129;negative regulation of cellular component organization and biogenesis;0.000607844138836274!GO:0003729;mRNA binding;0.000659292215464824!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000675463148603905!GO:0065002;intracellular protein transport across a membrane;0.000691553614195067!GO:0045786;negative regulation of progression through cell cycle;0.000738350434652451!GO:0016564;transcription repressor activity;0.000740267833230873!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000828356585672699!GO:0051246;regulation of protein metabolic process;0.000852586971232215!GO:0051170;nuclear import;0.000879634983231348!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000962600468986407!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000962600468986407!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000962600468986407!GO:0006891;intra-Golgi vesicle-mediated transport;0.00101755557298988!GO:0043038;amino acid activation;0.00115554507782462!GO:0006418;tRNA aminoacylation for protein translation;0.00115554507782462!GO:0043039;tRNA aminoacylation;0.00115554507782462!GO:0006643;membrane lipid metabolic process;0.00121671127180177!GO:0016740;transferase activity;0.00125022576049023!GO:0030384;phosphoinositide metabolic process;0.0012653003803271!GO:0004386;helicase activity;0.00127330647745713!GO:0006892;post-Golgi vesicle-mediated transport;0.00132224212243408!GO:0048523;negative regulation of cellular process;0.00132911109408004!GO:0051261;protein depolymerization;0.0015484156950153!GO:0007019;microtubule depolymerization;0.0016467224148843!GO:0030132;clathrin coat of coated pit;0.00170606301303712!GO:0051056;regulation of small GTPase mediated signal transduction;0.00173303152994238!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00206563521863439!GO:0055083;monovalent inorganic anion homeostasis;0.00206563521863439!GO:0055064;chloride ion homeostasis;0.00206563521863439!GO:0030644;cellular chloride ion homeostasis;0.00206563521863439!GO:0007269;neurotransmitter secretion;0.00206587723177883!GO:0008154;actin polymerization and/or depolymerization;0.00242126416767383!GO:0003713;transcription coactivator activity;0.0024946957776835!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00261859547765471!GO:0016311;dephosphorylation;0.00265955366845582!GO:0008026;ATP-dependent helicase activity;0.00273466284587351!GO:0031072;heat shock protein binding;0.002759864832974!GO:0006612;protein targeting to membrane;0.00297874248306987!GO:0046930;pore complex;0.0031025650978628!GO:0031901;early endosome membrane;0.00312385966519427!GO:0000314;organellar small ribosomal subunit;0.00321552614526286!GO:0005763;mitochondrial small ribosomal subunit;0.00321552614526286!GO:0016050;vesicle organization and biogenesis;0.00330415378037833!GO:0000159;protein phosphatase type 2A complex;0.00343769953869382!GO:0048487;beta-tubulin binding;0.00349888419616607!GO:0003724;RNA helicase activity;0.00358317649555249!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00371880180007261!GO:0005938;cell cortex;0.00373525300818596!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00379820677410912!GO:0004667;prostaglandin-D synthase activity;0.00379820677410912!GO:0050802;circadian sleep/wake cycle, sleep;0.00379820677410912!GO:0022410;circadian sleep/wake cycle process;0.00379820677410912!GO:0042749;regulation of circadian sleep/wake cycle;0.00379820677410912!GO:0005762;mitochondrial large ribosomal subunit;0.00384094093043916!GO:0000315;organellar large ribosomal subunit;0.00384094093043916!GO:0030133;transport vesicle;0.00384964106774276!GO:0051168;nuclear export;0.00390121427033066!GO:0051427;hormone receptor binding;0.00392869450169101!GO:0000323;lytic vacuole;0.00392869450169101!GO:0005764;lysosome;0.00392869450169101!GO:0019904;protein domain specific binding;0.00392869450169101!GO:0005869;dynactin complex;0.00397932605167316!GO:0051087;chaperone binding;0.00418500590838495!GO:0006974;response to DNA damage stimulus;0.00429783614870583!GO:0007265;Ras protein signal transduction;0.00435492865040671!GO:0006818;hydrogen transport;0.00435993414899389!GO:0051540;metal cluster binding;0.00435993414899389!GO:0051536;iron-sulfur cluster binding;0.00435993414899389!GO:0043284;biopolymer biosynthetic process;0.00439658050117833!GO:0006334;nucleosome assembly;0.00440887169116991!GO:0005839;proteasome core complex (sensu Eukaryota);0.00462340120257141!GO:0006366;transcription from RNA polymerase II promoter;0.00463901332567025!GO:0003714;transcription corepressor activity;0.00467035440837347!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00481069339032769!GO:0031114;regulation of microtubule depolymerization;0.00491441958690731!GO:0007026;negative regulation of microtubule depolymerization;0.00491441958690731!GO:0051920;peroxiredoxin activity;0.00497001957714042!GO:0030137;COPI-coated vesicle;0.00497675743019172!GO:0030742;GTP-dependent protein binding;0.00516445099230482!GO:0032011;ARF protein signal transduction;0.00521562633991204!GO:0032012;regulation of ARF protein signal transduction;0.00521562633991204!GO:0043209;myelin sheath;0.00533347613055236!GO:0008047;enzyme activator activity;0.0054748981747863!GO:0008022;protein C-terminus binding;0.00558042752831109!GO:0004721;phosphoprotein phosphatase activity;0.00558042752831109!GO:0031497;chromatin assembly;0.00574108899820166!GO:0016791;phosphoric monoester hydrolase activity;0.0059367860404513!GO:0050811;GABA receptor binding;0.00594275666352733!GO:0008601;protein phosphatase type 2A regulator activity;0.0061722193930302!GO:0012506;vesicle membrane;0.00626923193104072!GO:0045055;regulated secretory pathway;0.00628104579742778!GO:0042254;ribosome biogenesis and assembly;0.00628654398366504!GO:0022406;membrane docking;0.00649008553086868!GO:0048278;vesicle docking;0.00649008553086868!GO:0015992;proton transport;0.00667417527719438!GO:0030426;growth cone;0.00667925165200429!GO:0048519;negative regulation of biological process;0.00667925165200429!GO:0006402;mRNA catabolic process;0.00679624444839487!GO:0006281;DNA repair;0.00684622181556578!GO:0035257;nuclear hormone receptor binding;0.00687724726022733!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00687863941213776!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00687863941213776!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0069259066548361!GO:0005741;mitochondrial outer membrane;0.00699376958615078!GO:0030427;site of polarized growth;0.00712615640137158!GO:0004722;protein serine/threonine phosphatase activity;0.00713899340001933!GO:0008250;oligosaccharyl transferase complex;0.00724958846240476!GO:0003711;transcription elongation regulator activity;0.00736528062566037!GO:0001578;microtubule bundle formation;0.00755956598341069!GO:0019783;small conjugating protein-specific protease activity;0.00808115797171775!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00814543237280793!GO:0006470;protein amino acid dephosphorylation;0.0081765215820581!GO:0001505;regulation of neurotransmitter levels;0.00818168464118999!GO:0006904;vesicle docking during exocytosis;0.00821678333372959!GO:0046488;phosphatidylinositol metabolic process;0.00821678333372959!GO:0048167;regulation of synaptic plasticity;0.00831765392656376!GO:0046474;glycerophospholipid biosynthetic process;0.00843938303345493!GO:0016363;nuclear matrix;0.00862010717679673!GO:0019843;rRNA binding;0.00882646487097897!GO:0050794;regulation of cellular process;0.00928590424751981!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00943555660231767!GO:0033043;regulation of organelle organization and biogenesis;0.00943555660231767!GO:0005791;rough endoplasmic reticulum;0.00943555660231767!GO:0050803;regulation of synapse structure and activity;0.00956147342107549!GO:0006672;ceramide metabolic process;0.00964721700517918!GO:0005774;vacuolar membrane;0.00979288228171972!GO:0031902;late endosome membrane;0.00979557613478091!GO:0004843;ubiquitin-specific protease activity;0.00988453201971796!GO:0050789;regulation of biological process;0.0100934427325224!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0103831730643578!GO:0015002;heme-copper terminal oxidase activity;0.0103831730643578!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0103831730643578!GO:0004129;cytochrome-c oxidase activity;0.0103831730643578!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0105489810672519!GO:0043021;ribonucleoprotein binding;0.0105513491192224!GO:0016836;hydro-lyase activity;0.0105711645714181!GO:0006665;sphingolipid metabolic process;0.0109798971835615!GO:0019867;outer membrane;0.0111094027728533!GO:0030867;rough endoplasmic reticulum membrane;0.0111185062856627!GO:0004221;ubiquitin thiolesterase activity;0.0111185062856627!GO:0001508;regulation of action potential;0.0113775583614929!GO:0031968;organelle outer membrane;0.0116592049053702!GO:0007242;intracellular signaling cascade;0.0125236101632348!GO:0004674;protein serine/threonine kinase activity;0.0125904482609611!GO:0030119;AP-type membrane coat adaptor complex;0.0128228100593292!GO:0006730;one-carbon compound metabolic process;0.0130130192173987!GO:0044433;cytoplasmic vesicle part;0.0134911319378172!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0134911319378172!GO:0005813;centrosome;0.0136926557636258!GO:0008610;lipid biosynthetic process;0.0136926557636258!GO:0030027;lamellipodium;0.0139620050520556!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0140900030720448!GO:0030131;clathrin adaptor complex;0.0142155933821221!GO:0006607;NLS-bearing substrate import into nucleus;0.0142200723397936!GO:0004298;threonine endopeptidase activity;0.0143295280990629!GO:0016301;kinase activity;0.0145456348834454!GO:0042158;lipoprotein biosynthetic process;0.0147029948459121!GO:0016584;nucleosome positioning;0.0147029948459121!GO:0007272;ensheathment of neurons;0.0147029948459121!GO:0008366;axon ensheathment;0.0147029948459121!GO:0032535;regulation of cellular component size;0.0147546314005941!GO:0006916;anti-apoptosis;0.0153901704256203!GO:0004576;oligosaccharyl transferase activity;0.0154465289509903!GO:0006644;phospholipid metabolic process;0.015860965441791!GO:0044448;cell cortex part;0.0159792589421482!GO:0005096;GTPase activator activity;0.0159792589421482!GO:0008180;signalosome;0.0160005178807896!GO:0006399;tRNA metabolic process;0.0160427418325768!GO:0035035;histone acetyltransferase binding;0.0165763102291471!GO:0009892;negative regulation of metabolic process;0.0166592803401593!GO:0019902;phosphatase binding;0.0168354625868373!GO:0046489;phosphoinositide biosynthetic process;0.0171340552358707!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0183897066225088!GO:0019208;phosphatase regulator activity;0.0184186013276866!GO:0048500;signal recognition particle;0.0185891700881617!GO:0019894;kinesin binding;0.0187928932901608!GO:0006887;exocytosis;0.0195401614909653!GO:0051539;4 iron, 4 sulfur cluster binding;0.0198325650389504!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0203854076717819!GO:0000062;acyl-CoA binding;0.020525938598871!GO:0043681;protein import into mitochondrion;0.0207655118282046!GO:0030041;actin filament polymerization;0.0209855272118027!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0209855272118027!GO:0030658;transport vesicle membrane;0.0213812994881958!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0213812994881958!GO:0005048;signal sequence binding;0.0222292246525998!GO:0016579;protein deubiquitination;0.0224968010958622!GO:0046519;sphingoid metabolic process;0.0227424075812541!GO:0030663;COPI coated vesicle membrane;0.0233122672529598!GO:0030126;COPI vesicle coat;0.0233122672529598!GO:0005868;cytoplasmic dynein complex;0.0236586040258707!GO:0000059;protein import into nucleus, docking;0.024705234429147!GO:0035258;steroid hormone receptor binding;0.024705234429147!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0248697065534682!GO:0031124;mRNA 3'-end processing;0.0252912788998957!GO:0009117;nucleotide metabolic process;0.0253950136974786!GO:0003779;actin binding;0.0255634855309285!GO:0005815;microtubule organizing center;0.0256249054488916!GO:0030832;regulation of actin filament length;0.0256249054488916!GO:0016835;carbon-oxygen lyase activity;0.025967612152769!GO:0030258;lipid modification;0.0261032394870671!GO:0006383;transcription from RNA polymerase III promoter;0.0261884363933624!GO:0030660;Golgi-associated vesicle membrane;0.0266917103877363!GO:0008186;RNA-dependent ATPase activity;0.0266917103877363!GO:0016790;thiolester hydrolase activity;0.0268159679638765!GO:0044437;vacuolar part;0.0285030579012674!GO:0030125;clathrin vesicle coat;0.0292822498655659!GO:0030665;clathrin coated vesicle membrane;0.0292822498655659!GO:0006364;rRNA processing;0.0294238879804717!GO:0005765;lysosomal membrane;0.0295925912832833!GO:0005667;transcription factor complex;0.0295968067118599!GO:0043069;negative regulation of programmed cell death;0.0296007898410645!GO:0006091;generation of precursor metabolites and energy;0.0302925697258833!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0311949978146669!GO:0045047;protein targeting to ER;0.0311949978146669!GO:0051287;NAD binding;0.0312999641169173!GO:0006595;polyamine metabolic process;0.0313494509730943!GO:0033116;ER-Golgi intermediate compartment membrane;0.0313494509730943!GO:0050767;regulation of neurogenesis;0.0315848291063144!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0316487961220792!GO:0008286;insulin receptor signaling pathway;0.0317808132261337!GO:0051726;regulation of cell cycle;0.031781598173318!GO:0008270;zinc ion binding;0.031781598173318!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0323696052512564!GO:0030659;cytoplasmic vesicle membrane;0.0323971108395042!GO:0008139;nuclear localization sequence binding;0.0324924494000856!GO:0000785;chromatin;0.0324924494000856!GO:0007049;cell cycle;0.0325289556572664!GO:0003899;DNA-directed RNA polymerase activity;0.032717265139475!GO:0043066;negative regulation of apoptosis;0.0327380432720352!GO:0045603;positive regulation of endothelial cell differentiation;0.0329007890505217!GO:0019226;transmission of nerve impulse;0.033163348840778!GO:0008312;7S RNA binding;0.0338813154661297!GO:0019887;protein kinase regulator activity;0.0339710444063433!GO:0007017;microtubule-based process;0.0343229610244173!GO:0016481;negative regulation of transcription;0.0348281429984282!GO:0032981;mitochondrial respiratory chain complex I assembly;0.035239147571497!GO:0010257;NADH dehydrogenase complex assembly;0.035239147571497!GO:0033108;mitochondrial respiratory chain complex assembly;0.035239147571497!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0356138409193542!GO:0006895;Golgi to endosome transport;0.0357720467130156!GO:0006401;RNA catabolic process;0.0358044382795083!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0358551382000837!GO:0008429;phosphatidylethanolamine binding;0.0359160761768401!GO:0000902;cell morphogenesis;0.0359160761768401!GO:0032989;cellular structure morphogenesis;0.0359160761768401!GO:0030911;TPR domain binding;0.0360422869276879!GO:0050749;apolipoprotein E receptor binding;0.0380105828069629!GO:0005637;nuclear inner membrane;0.0388867726340645!GO:0016072;rRNA metabolic process;0.0392337818980796!GO:0043087;regulation of GTPase activity;0.0395865314305145!GO:0006007;glucose catabolic process;0.0398086745745083!GO:0000118;histone deacetylase complex;0.0398393874935269!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0398416867107955!GO:0019888;protein phosphatase regulator activity;0.0398546033119077!GO:0046578;regulation of Ras protein signal transduction;0.0410042030203915!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.041006385042351!GO:0005885;Arp2/3 protein complex;0.041006385042351!GO:0009966;regulation of signal transduction;0.041006385042351!GO:0016585;chromatin remodeling complex;0.0412661761773155!GO:0006096;glycolysis;0.041446497186142!GO:0005875;microtubule associated complex;0.0414907569692575!GO:0003730;mRNA 3'-UTR binding;0.0422353092208963!GO:0005955;calcineurin complex;0.0426150534840428!GO:0005853;eukaryotic translation elongation factor 1 complex;0.042798026056592!GO:0016079;synaptic vesicle exocytosis;0.0442006097148599!GO:0007005;mitochondrion organization and biogenesis;0.0445541958216994!GO:0045334;clathrin-coated endocytic vesicle;0.0448949156077355!GO:0003725;double-stranded RNA binding;0.0457640066722773!GO:0005784;translocon complex;0.0467239302661138!GO:0018196;peptidyl-asparagine modification;0.0469158484868372!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0469158484868372!GO:0030145;manganese ion binding;0.0472289214108988!GO:0016126;sterol biosynthetic process;0.0473485136104703!GO:0000209;protein polyubiquitination;0.0473625786980048!GO:0007034;vacuolar transport;0.0475907423440697!GO:0006497;protein amino acid lipidation;0.0480136027273071!GO:0000074;regulation of progression through cell cycle;0.0487117419443843!GO:0019207;kinase regulator activity;0.0487117419443843!GO:0005085;guanyl-nucleotide exchange factor activity;0.049480562843527!GO:0044262;cellular carbohydrate metabolic process;0.0496196652134364 | |||
|sample_id=10083 | |sample_id=10083 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=cerebellum | |sample_tissue=cerebellum | ||
|top_motifs=REST:3.97584738526;ZFP161:3.73957279948;FOXM1:3.4958738479;MED-1{core}:3.08410174001;CUX2:3.00645065225;GCM1,2:2.94554503402;PAX6:2.91710731762;BREu{core}:2.78817048611;EGR1..3:2.73866296413;RORA:2.73257097289;DBP:2.72416261708;ZBTB6:2.71067564138;MTF1:2.58734631582;AHR_ARNT_ARNT2:2.57571596637;SOX5:2.5668954592;TFAP2B:2.54599487886;ARID5B:2.52640167364;FOXQ1:2.44078228025;XBP1:2.43532063245;MZF1:2.41856244373;GATA4:2.39626793084;LMO2:2.35172471858;NHLH1,2:2.34469738073;KLF4:2.32573256773;ADNP_IRX_SIX_ZHX:2.32059920824;HIC1:2.23540486079;PRDM1:2.22721608387;GTF2I:2.21576578228;RREB1:2.21071745188;MYFfamily:2.18399722257;HOXA9_MEIS1:2.17724229755;MTE{core}:2.15690200186;ATF2:2.14693752989;PATZ1:1.94105335548;TEF:1.91964398893;RBPJ:1.87637571969;POU3F1..4:1.87236120452;POU6F1:1.86450524571;OCT4_SOX2{dimer}:1.85404782814;ONECUT1,2:1.84286585955;FOXP1:1.82617083841;PAX5:1.74685464696;NRF1:1.7186469712;POU5F1:1.68917921234;PAX4:1.67538835864;SOX{8,9,10}:1.63572743895;TFDP1:1.63282458991;GFI1B:1.63267356745;HMGA1,2:1.58469209697;TGIF1:1.51714345641;IKZF2:1.51149004928;ALX1:1.45037540581;NKX3-2:1.34300766028;HOX{A4,D4}:1.33679950994;JUN:1.30698906803;SMAD1..7,9:1.22512420692;NFIL3:1.21542696452;EP300:1.20660874347;NKX2-3_NKX2-5:1.19102185436;SOX2:1.1755398195;RFX1:1.1616091655;CDC5L:1.13852741888;EVI1:1.13839400595;ZNF423:1.13009532178;TOPORS:1.11349739179;YY1:1.10751786958;ZEB1:1.10431790288;MAZ:1.0942589468;FOXL1:1.09013410355;MYOD1:1.07524027597;RFX2..5_RFXANK_RFXAP:1.06162648955;STAT1,3:1.01793910672;PDX1:1.01087752192;NFIX:1.00627053668;ZNF143:0.963650085472;MYBL2:0.941189697469;FOX{I1,J2}:0.923694732369;MEF2{A,B,C,D}:0.878318957929;TFAP2{A,C}:0.868329797326;SOX17:0.844210455983;ZNF384:0.831436091996;PRRX1,2:0.829283257964;ZIC1..3:0.799909674636;GTF2A1,2:0.764928204656;NKX3-1:0.740086865319;BPTF:0.737622486627;ZBTB16:0.734942056975;MAFB:0.716551974135;CREB1:0.700606675788;FOXO1,3,4:0.633641512751;ESR1:0.629138135872;LEF1_TCF7_TCF7L1,2:0.589880786201;SP1:0.511528093745;XCPE1{core}:0.466145718431;ESRRA:0.439540571518;ATF5_CREB3:0.391120427539;SREBF1,2:0.382906592684;TLX1..3_NFIC{dimer}:0.358414716861;FOX{F1,F2,J1}:0.356084192537;UFEwm:0.350317899361;NFY{A,B,C}:0.345772559082;LHX3,4:0.342182972252;AR:0.335462086238;FOX{D1,D2}:0.332167656105;ATF6:0.323642270846;NKX2-1,4:0.318892789301;HAND1,2:0.293188977876;T:0.26947134461;PAX3,7:0.188873317208;PITX1..3:0.18223604788;TLX2:0.178118859405;ATF4:0.123103068557;PAX2:0.0998931081894;SNAI1..3:0.0740092332067;EBF1:0.0274881452256;GZF1:0.00505860848864;GFI1:-0.00345562509149;FOXA2:-0.00386031399336;NR3C1:-0.0344836211758;FOXD3:-0.0392405552009;SPZ1:-0.0514029355433;AIRE:-0.0547834133183;CRX:-0.0701680971649;FOXP3:-0.0705529135404;PAX1,9:-0.0827648035254;POU1F1:-0.144394800899;HOX{A6,A7,B6,B7}:-0.171478261746;NR5A1,2:-0.201121317311;NFE2L1:-0.272567105406;FOXN1:-0.282933396219;NANOG:-0.331813159972;PAX8:-0.350569511307;STAT5{A,B}:-0.376154974693;VSX1,2:-0.464573952529;NKX6-1,2:-0.486506011779;IRF7:-0.498906128381;HIF1A:-0.531192552913;IRF1,2:-0.543439589369;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.543696445027;HNF4A_NR2F1,2:-0.558406510571;TFAP4:-0.636199936632;NANOG{mouse}:-0.664505098089;SPI1:-0.701820300442;SPIB:-0.715927201724;DMAP1_NCOR{1,2}_SMARC:-0.736665867918;TAL1_TCF{3,4,12}:-0.757705469208;CDX1,2,4:-0.77684909239;TFCP2:-0.77790275814;NFE2L2:-0.789547436729;HNF1A:-0.815088408159;RXR{A,B,G}:-0.850427647109;ZNF238:-0.924591797371;ALX4:-0.957080657732;NFE2:-0.984588653884;IKZF1:-0.993868501396;CEBPA,B_DDIT3:-1.00786767171;E2F1..5:-1.0251408998;bHLH_family:-1.04086927475;FOSL2:-1.06758616995;NFATC1..3:-1.10130432733;GATA6:-1.10891288669;RUNX1..3:-1.12351726164;TEAD1:-1.12539313408;ETS1,2:-1.16575983636;HMX1:-1.16614448331;BACH2:-1.18582439266;NR6A1:-1.18863617234;HES1:-1.18957828044;STAT2,4,6:-1.20243420942;FOS_FOS{B,L1}_JUN{B,D}:-1.21504605611;NFKB1_REL_RELA:-1.22819666633;NR1H4:-1.2368671144;TP53:-1.26896301883;PBX1:-1.27400815906;POU2F1..3:-1.30199174696;ELK1,4_GABP{A,B1}:-1.30384623775;HLF:-1.31414235718;HBP1_HMGB_SSRP1_UBTF:-1.31807455984;RXRA_VDR{dimer}:-1.33637494616;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.38211942839;PPARG:-1.42800444541;HOX{A5,B5}:-1.52012236545;ZNF148:-1.55184506679;NKX2-2,8:-1.58027474373;TBP:-1.58056310743;HSF1,2:-1.70606488746;MYB:-1.74927195141;SRF:-1.75777497705;ELF1,2,4:-1.93013112527;EN1,2:-2.05696622851;TBX4,5:-2.09405736591;GLI1..3:-2.33932028004 | |top_motifs=REST:3.97584738526;ZFP161:3.73957279948;FOXM1:3.4958738479;MED-1{core}:3.08410174001;CUX2:3.00645065225;GCM1,2:2.94554503402;PAX6:2.91710731762;BREu{core}:2.78817048611;EGR1..3:2.73866296413;RORA:2.73257097289;DBP:2.72416261708;ZBTB6:2.71067564138;MTF1:2.58734631582;AHR_ARNT_ARNT2:2.57571596637;SOX5:2.5668954592;TFAP2B:2.54599487886;ARID5B:2.52640167364;FOXQ1:2.44078228025;XBP1:2.43532063245;MZF1:2.41856244373;GATA4:2.39626793084;LMO2:2.35172471858;NHLH1,2:2.34469738073;KLF4:2.32573256773;ADNP_IRX_SIX_ZHX:2.32059920824;HIC1:2.23540486079;PRDM1:2.22721608387;GTF2I:2.21576578228;RREB1:2.21071745188;MYFfamily:2.18399722257;HOXA9_MEIS1:2.17724229755;MTE{core}:2.15690200186;ATF2:2.14693752989;PATZ1:1.94105335548;TEF:1.91964398893;RBPJ:1.87637571969;POU3F1..4:1.87236120452;POU6F1:1.86450524571;OCT4_SOX2{dimer}:1.85404782814;ONECUT1,2:1.84286585955;FOXP1:1.82617083841;PAX5:1.74685464696;NRF1:1.7186469712;POU5F1:1.68917921234;PAX4:1.67538835864;SOX{8,9,10}:1.63572743895;TFDP1:1.63282458991;GFI1B:1.63267356745;HMGA1,2:1.58469209697;TGIF1:1.51714345641;IKZF2:1.51149004928;ALX1:1.45037540581;NKX3-2:1.34300766028;HOX{A4,D4}:1.33679950994;JUN:1.30698906803;SMAD1..7,9:1.22512420692;NFIL3:1.21542696452;EP300:1.20660874347;NKX2-3_NKX2-5:1.19102185436;SOX2:1.1755398195;RFX1:1.1616091655;CDC5L:1.13852741888;EVI1:1.13839400595;ZNF423:1.13009532178;TOPORS:1.11349739179;YY1:1.10751786958;ZEB1:1.10431790288;MAZ:1.0942589468;FOXL1:1.09013410355;MYOD1:1.07524027597;RFX2..5_RFXANK_RFXAP:1.06162648955;STAT1,3:1.01793910672;PDX1:1.01087752192;NFIX:1.00627053668;ZNF143:0.963650085472;MYBL2:0.941189697469;FOX{I1,J2}:0.923694732369;MEF2{A,B,C,D}:0.878318957929;TFAP2{A,C}:0.868329797326;SOX17:0.844210455983;ZNF384:0.831436091996;PRRX1,2:0.829283257964;ZIC1..3:0.799909674636;GTF2A1,2:0.764928204656;NKX3-1:0.740086865319;BPTF:0.737622486627;ZBTB16:0.734942056975;MAFB:0.716551974135;CREB1:0.700606675788;FOXO1,3,4:0.633641512751;ESR1:0.629138135872;LEF1_TCF7_TCF7L1,2:0.589880786201;SP1:0.511528093745;XCPE1{core}:0.466145718431;ESRRA:0.439540571518;ATF5_CREB3:0.391120427539;SREBF1,2:0.382906592684;TLX1..3_NFIC{dimer}:0.358414716861;FOX{F1,F2,J1}:0.356084192537;UFEwm:0.350317899361;NFY{A,B,C}:0.345772559082;LHX3,4:0.342182972252;AR:0.335462086238;FOX{D1,D2}:0.332167656105;ATF6:0.323642270846;NKX2-1,4:0.318892789301;HAND1,2:0.293188977876;T:0.26947134461;PAX3,7:0.188873317208;PITX1..3:0.18223604788;TLX2:0.178118859405;ATF4:0.123103068557;PAX2:0.0998931081894;SNAI1..3:0.0740092332067;EBF1:0.0274881452256;GZF1:0.00505860848864;GFI1:-0.00345562509149;FOXA2:-0.00386031399336;NR3C1:-0.0344836211758;FOXD3:-0.0392405552009;SPZ1:-0.0514029355433;AIRE:-0.0547834133183;CRX:-0.0701680971649;FOXP3:-0.0705529135404;PAX1,9:-0.0827648035254;POU1F1:-0.144394800899;HOX{A6,A7,B6,B7}:-0.171478261746;NR5A1,2:-0.201121317311;NFE2L1:-0.272567105406;FOXN1:-0.282933396219;NANOG:-0.331813159972;PAX8:-0.350569511307;STAT5{A,B}:-0.376154974693;VSX1,2:-0.464573952529;NKX6-1,2:-0.486506011779;IRF7:-0.498906128381;HIF1A:-0.531192552913;IRF1,2:-0.543439589369;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.543696445027;HNF4A_NR2F1,2:-0.558406510571;TFAP4:-0.636199936632;NANOG{mouse}:-0.664505098089;SPI1:-0.701820300442;SPIB:-0.715927201724;DMAP1_NCOR{1,2}_SMARC:-0.736665867918;TAL1_TCF{3,4,12}:-0.757705469208;CDX1,2,4:-0.77684909239;TFCP2:-0.77790275814;NFE2L2:-0.789547436729;HNF1A:-0.815088408159;RXR{A,B,G}:-0.850427647109;ZNF238:-0.924591797371;ALX4:-0.957080657732;NFE2:-0.984588653884;IKZF1:-0.993868501396;CEBPA,B_DDIT3:-1.00786767171;E2F1..5:-1.0251408998;bHLH_family:-1.04086927475;FOSL2:-1.06758616995;NFATC1..3:-1.10130432733;GATA6:-1.10891288669;RUNX1..3:-1.12351726164;TEAD1:-1.12539313408;ETS1,2:-1.16575983636;HMX1:-1.16614448331;BACH2:-1.18582439266;NR6A1:-1.18863617234;HES1:-1.18957828044;STAT2,4,6:-1.20243420942;FOS_FOS{B,L1}_JUN{B,D}:-1.21504605611;NFKB1_REL_RELA:-1.22819666633;NR1H4:-1.2368671144;TP53:-1.26896301883;PBX1:-1.27400815906;POU2F1..3:-1.30199174696;ELK1,4_GABP{A,B1}:-1.30384623775;HLF:-1.31414235718;HBP1_HMGB_SSRP1_UBTF:-1.31807455984;RXRA_VDR{dimer}:-1.33637494616;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.38211942839;PPARG:-1.42800444541;HOX{A5,B5}:-1.52012236545;ZNF148:-1.55184506679;NKX2-2,8:-1.58027474373;TBP:-1.58056310743;HSF1,2:-1.70606488746;MYB:-1.74927195141;SRF:-1.75777497705;ELF1,2,4:-1.93013112527;EN1,2:-2.05696622851;TBX4,5:-2.09405736591;GLI1..3:-2.33932028004 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10083-102B2;search_select_hide=table117:FF:10083-102B2 | |||
}} | }} | ||
Latest revision as of 12:20, 3 June 2020
| Name: | cerebellum, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11795 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11795
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11795
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0783 |
| 10 | 10 | 0.0633 |
| 100 | 100 | 0.509 |
| 101 | 101 | 0.964 |
| 102 | 102 | 0.509 |
| 103 | 103 | 0.0293 |
| 104 | 104 | 0.0792 |
| 105 | 105 | 0.0893 |
| 106 | 106 | 0.0299 |
| 107 | 107 | 0.0793 |
| 108 | 108 | 0.8 |
| 109 | 109 | 0.00475 |
| 11 | 11 | 0.0196 |
| 110 | 110 | 0.0602 |
| 111 | 111 | 0.395 |
| 112 | 112 | 0.635 |
| 113 | 113 | 0.364 |
| 114 | 114 | 0.194 |
| 115 | 115 | 0.61 |
| 116 | 116 | 0.352 |
| 117 | 117 | 0.0109 |
| 118 | 118 | 0.249 |
| 119 | 119 | 0.424 |
| 12 | 12 | 0.579 |
| 120 | 120 | 0.118 |
| 121 | 121 | 0.655 |
| 122 | 122 | 0.599 |
| 123 | 123 | 0.429 |
| 124 | 124 | 0.323 |
| 125 | 125 | 0.802 |
| 126 | 126 | 0.0264 |
| 127 | 127 | 0.499 |
| 128 | 128 | 0.363 |
| 129 | 129 | 0.497 |
| 13 | 13 | 0.00157 |
| 130 | 130 | 0.0549 |
| 131 | 131 | 0.435 |
| 132 | 132 | 0.52 |
| 133 | 133 | 0.0433 |
| 134 | 134 | 0.533 |
| 135 | 135 | 0.622 |
| 136 | 136 | 0.00847 |
| 137 | 137 | 0.479 |
| 138 | 138 | 0.887 |
| 139 | 139 | 0.228 |
| 14 | 14 | 0.624 |
| 140 | 140 | 0.452 |
| 141 | 141 | 0.666 |
| 142 | 142 | 0.882 |
| 143 | 143 | 0.0313 |
| 144 | 144 | 0.99 |
| 145 | 145 | 0.23 |
| 146 | 146 | 0.336 |
| 147 | 147 | 0.916 |
| 148 | 148 | 0.0508 |
| 149 | 149 | 0.161 |
| 15 | 15 | 0.0541 |
| 150 | 150 | 0.204 |
| 151 | 151 | 0.729 |
| 152 | 152 | 0.0541 |
| 153 | 153 | 0.797 |
| 154 | 154 | 0.606 |
| 155 | 155 | 0.649 |
| 156 | 156 | 0.74 |
| 157 | 157 | 0.269 |
| 158 | 158 | 0.176 |
| 159 | 159 | 0.0204 |
| 16 | 16 | 0.0862 |
| 160 | 160 | 0.217 |
| 161 | 161 | 0.293 |
| 162 | 162 | 0.934 |
| 163 | 163 | 0.566 |
| 164 | 164 | 0.0372 |
| 165 | 165 | 0.0435 |
| 166 | 166 | 0.709 |
| 167 | 167 | 0.932 |
| 168 | 168 | 0.355 |
| 169 | 169 | 0.0239 |
| 17 | 17 | 0.0825 |
| 18 | 18 | 0.181 |
| 19 | 19 | 0.302 |
| 2 | 2 | 0.848 |
| 20 | 20 | 0.24 |
| 21 | 21 | 0.101 |
| 22 | 22 | 0.244 |
| 23 | 23 | 0.17 |
| 24 | 24 | 0.0235 |
| 25 | 25 | 0.46 |
| 26 | 26 | 6.39698e-4 |
| 27 | 27 | 0.714 |
| 28 | 28 | 0.591 |
| 29 | 29 | 0.0149 |
| 3 | 3 | 0.0373 |
| 30 | 30 | 0.977 |
| 31 | 31 | 0.997 |
| 32 | 32 | 0.115 |
| 33 | 33 | 0.045 |
| 34 | 34 | 0.613 |
| 35 | 35 | 0.784 |
| 36 | 36 | 0.152 |
| 37 | 37 | 0.0498 |
| 38 | 38 | 0.352 |
| 39 | 39 | 0.194 |
| 4 | 4 | 0.946 |
| 40 | 40 | 0.0526 |
| 41 | 41 | 0.279 |
| 42 | 42 | 0.164 |
| 43 | 43 | 0.0914 |
| 44 | 44 | 0.415 |
| 45 | 45 | 0.689 |
| 46 | 46 | 0.0617 |
| 47 | 47 | 0.0603 |
| 48 | 48 | 0.0802 |
| 49 | 49 | 0.22 |
| 5 | 5 | 0.477 |
| 50 | 50 | 0.331 |
| 51 | 51 | 0.406 |
| 52 | 52 | 0.436 |
| 53 | 53 | 0.929 |
| 54 | 54 | 0.434 |
| 55 | 55 | 0.58 |
| 56 | 56 | 0.312 |
| 57 | 57 | 0.384 |
| 58 | 58 | 0.347 |
| 59 | 59 | 0.0678 |
| 6 | 6 | 0.928 |
| 60 | 60 | 0.0419 |
| 61 | 61 | 0.0672 |
| 62 | 62 | 0.151 |
| 63 | 63 | 0.128 |
| 64 | 64 | 0.34 |
| 65 | 65 | 0.31 |
| 66 | 66 | 0.152 |
| 67 | 67 | 0.316 |
| 68 | 68 | 0.167 |
| 69 | 69 | 0.576 |
| 7 | 7 | 0.0369 |
| 70 | 70 | 0.0165 |
| 71 | 71 | 0.0089 |
| 72 | 72 | 0.225 |
| 73 | 73 | 0.0317 |
| 74 | 74 | 0.855 |
| 75 | 75 | 0.0406 |
| 76 | 76 | 0.455 |
| 77 | 77 | 0.17 |
| 78 | 78 | 0.0156 |
| 79 | 79 | 0.408 |
| 8 | 8 | 0.0467 |
| 80 | 80 | 0.137 |
| 81 | 81 | 0.575 |
| 82 | 82 | 0.73 |
| 83 | 83 | 0.027 |
| 84 | 84 | 0.786 |
| 85 | 85 | 0.213 |
| 86 | 86 | 0.225 |
| 87 | 87 | 8.05916e-4 |
| 88 | 88 | 0.85 |
| 89 | 89 | 0.318 |
| 9 | 9 | 0.316 |
| 90 | 90 | 0.184 |
| 91 | 91 | 0.783 |
| 92 | 92 | 0.429 |
| 93 | 93 | 0.611 |
| 94 | 94 | 0.145 |
| 95 | 95 | 0.0257 |
| 96 | 96 | 0.702 |
| 97 | 97 | 0.586 |
| 98 | 98 | 0.391 |
| 99 | 99 | 0.507 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11795
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002037 (cerebellum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002680 (regional part of metencephalon)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001895 (metencephalon)
0002028 (hindbrain)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010083 (human cerebellum - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006215 (rhombic lip)
UBERON:0010316 (germ layer / neural crest)
