FF:10077-102A5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005024 | ||
|accession_numbers=CAGE;DRX008681;DRR009553;DRZ000978;DRZ002363;DRZ012328;DRZ013713 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000029,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002465,UBERON:0002193,UBERON:0002405 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010077 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lymph%2520node%252c%2520adult%252c%2520donor1.CNhs11788.10077-102A5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lymph%2520node%252c%2520adult%252c%2520donor1.CNhs11788.10077-102A5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lymph%2520node%252c%2520adult%252c%2520donor1.CNhs11788.10077-102A5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/lymph%2520node%252c%2520adult%252c%2520donor1.CNhs11788.10077-102A5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/lymph%2520node%252c%2520adult%252c%2520donor1.CNhs11788.10077-102A5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10077-102A5 | |id=FF:10077-102A5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010077 | ||
|is_obsolete= | |||
|library_id=CNhs11788 | |||
|library_id_phase_based=2:CNhs11788 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10077 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10077 | |||
|name=lymph node, adult, donor1 | |name=lymph node, adult, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11788,LSID820,release009,COMPLETED | |profile_hcage=CNhs11788,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0.926470571723194,0,0,0,0.395937307458639,0,0.0146617575304555,0.395937307458639,0.0219995877858871,0.255169475984643,0,0,0,0.174979787616842,0,0,0,0,0,0,0,0.174979787616842,0,0.146038709630974,0,0,0,0,0.299361719979401,0.712128459053195,0,0,0.709277613294865,0,0,0,0,0,0,0,0,0,0,0,0,0.102785858659424,0.299361719979401,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.174979787616842,0.299361719979401,0.0415111779140701,0.174979787616842,0.775173138478095,0,0,0.202018092766304,0.174979787616842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087489893808421,0,0,0,0,0.00167454131735378,0.0308313177282915,0,0,0.0959147307035005,0.0731989321984625,0.176070075348077,0,0.174979787616842,0,0,-0.0980353512377064,0.384798773771887,0,0,0,0,0,0,0.174979787616842,0,0,0,0,0,0,0,0,0,0,-0.0088837001140402,0,0,0,0,-0.166484179872685,0.174979787616842,0,0.174979787616842,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0.174979787616842,0,0.174979787616842,0,0.299361719979401,0,0,0,0.174979787616842,0,0,0.0521828446938367,0.174979787616842,0.12546894971904,-0.143515142523472,0,0.299361719979401,0.197852253091698,0,0,0,0,0.174979787616842,0,0.395937307458639,0.174979787616842,0,-0.128119866952565,0,0.724954668413088,0,0,0,0,0,0.53676197217532,0,0.151049259693952,-0.0683442610773682,0,0,0,0,0.20465479066581,0,0.354015976206394,0.313217139135221,0.0588446693274112,-0.132770402244397,-0.0428353963453331,0,0,0,0.0161409542726945,0.320853296310222,0,0,0.387303050748755,0.360333208372459,0,0,1.08284553704678,0.174979787616842,0.136982590276583,-0.067361747310358,0,0.100244566439738,0,0,0,0,0,0.299361719979401,0,0,0.174979787616842,0,0,0.751367019914717,0.0689487107796699,0,0,0,0,0.279680028854958,0,0.110882649032396,0.577986084978596,-0.0711929279707098,0.064761766095192,-0.186565743176145,0,0.694602747275702,0.20680685964592,0.399129250090095,0.0731989321984625,-0.147401849371139,0.284913740450287,0,0.335014395596286,-0.135657987427087,0.125888564327754,0.107889117482252,-0.0096088183633889,0.227762209818016,0.0089517256886733,0,0,0.174979787616842,0.135022498268898,0,0.106465643185985,-0.0941774070181348,-0.146887043690025,0.362287167452952,0.10401432477966,-0.203079378054378,-0.21191396806012,0.197638225341451,0.53955602138902,0.134336705548071,-0.0338887149024984,0,0.299361719979401,0,0.0434231604918974,-0.389974799648684,0.571378995166741,-0.00499964371670036,0.253651975659674,-0.0683442610773682,0.0680822423554045,-0.0333317436092255,0.233999328219496,0,0,0.196589989130991,0,0,0.174979787616842,0,0,-0.240571652289959,0.661494547224566,0.609378641518182,0,-0.0429926001367954,-0.0177787675218322,0.00249150388293778,0,-0.0338583180768733,0.193766545847833,0,0.145080073623458,0,-0.0727900221567127,0.446362822081794,-0.177926248095365,0.177160363079311,-0.0584468268118252,0.244261794349363,0.133853551323401,0.264855119369449,0.369316531553618,-0.124307696593413,0.386768627524847,0,-0.145915313047725,0.271774109313638,0.179417902123206,-0.127225291685824,0,-0.0206925394560333,0,0.181576403853247,0,0.347337166282296,0.00124907545987774,0.964039404693903,0.220837954468749,0,0.152402796193559,0.451755848868107,0,0.0208589638178136,0.0590357867761922,0,-0.150367083334639,-0.222800506512448,0.387904740606459,0.0984582733208723,0,-0.248397331456539,0,0,-0.07667494022271,0.0638856822150124,0,0.099410407989954,-0.434223126596555,0.0920816373104083,-0.115971073434934,0,0,-0.249763030534086,0,0.8721654997207,-0.00637289534698171,0.0217541694280939,0.0308313177282915,0.0460353784926454,0.138275701180912,0.476973759798663,0,0,0.121833954014225,0.299361719979401,0.12484412223984,0,0,-0.162391402790403,-0.116628112990133,0,0.087489893808421,0,0.0027029631715551,0,0,0,0,0.0576894466813265,0,0.0516023511650013,0.400043335692002,-0.354833330216448,0,0.291502288186972,0,0.174979787616842,0,0.174979787616842,0,0.13615328629202,0.113230237961031,0,-0.057757467155019,0.171266631828327,0.351878044323714,0,0,0,0,0.25917205744666,0.338446264838394,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0.197968653729319,0.174979787616842,0.117249330563178,0.000488851211820504,0.174979787616842,0,0,0.373660240085135,0.174979787616842,0,0,0.0304734093463898,0.140338684322146,0,0,0,0.0403803686347174,0.127504963248266,-0.0815818795468414,0,0.227353653614866,0.0369146900868644,-0.659005698961537,0,0,0.134590175668751,0,0,0.10708036939666,-0.0802805530702102,0.395937307458639,0,0,0,0,0,0,0,0.0850472075796455,0.0237139246246905,0,0.113385209082717,0,0,0.474895460000134,0,0,0,0,0,0.123794937772882,-0.0922240566585104,0,0,0,0,0,0,0,0.0633838707295175,-0.0790673263576778,0,0,0,0,0,0,0,0,0.525566534622373,0,0,0,0,0,0.775173138478095,0,0,0,0,0.335359164352444,0,0,0.0219995877858871,0,0,0,0,0,0,0,0.0232853737146866,0,0.926470571723194,0,0,0,-0.123319086035448,-0.370058366856532,0,0,0,0,0,0.395937307458639,0,0.500533921796312,0,0.174979787616842,0,0,0.361011086291157,0,0,0,-0.104796384789156,0,0.0146617575304555,0.395937307458639,0,0,0,0,0.174979787616842,0.087489893808421,0.087489893808421,0,0,0,0.087489893808421,0,0,0,0,0,0,0,0,0,-0.0732094922675661,0.030618889790565,0.409090162532793,0.130310406324403,0,0,0.0667333673463595,0,0,0,0,0,0,0.20610730597154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.119199574588137,0,0,0,0,0,0,0,0.712128459053195,0,0.087489893808421,0.266298497474454,0,0,0,0,0,0,-0.200486946848288,0.0644291138958725,0.0203010112396498,0.299361719979401,0,0.174979787616842,0.0952952875072455,0.174979787616842,0,0,0.174979787616842,0.10820240019794,0.174979787616842,0,0,0,0,0,0,0,0,0,0,0,0.174979787616842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146038709630974,0,0,0,0,0.395937307458639,0,0,0,0,0,0,0,0.087489893808421,0,0,0,0,0,0,0,0,0,0,0,0,0.299361719979401,0,0.395937307458639,0.237170753798121,0,0,0,0,0,0,0.0534785305330045,0.299361719979401,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174979787616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| |||
|rna_box=102 | |rna_box=102 | ||
|rna_catalog_number=Cat:AM7894 | |rna_catalog_number=Cat:AM7894 | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.47090000014687e-248!GO:0005737;cytoplasm;3.86571934548972e-152!GO:0043227;membrane-bound organelle;4.1870751968767e-129!GO:0043231;intracellular membrane-bound organelle;7.98970124851815e-129!GO:0043226;organelle;1.92685625669815e-122!GO:0043229;intracellular organelle;6.18975276514296e-122!GO:0044444;cytoplasmic part;8.39925853586624e-107!GO:0005515;protein binding;1.66634420422906e-88!GO:0044422;organelle part;3.44788128846565e-81!GO:0044446;intracellular organelle part;1.4562225419593e-79!GO:0032991;macromolecular complex;1.61356451025084e-70!GO:0044238;primary metabolic process;6.93980188728551e-60!GO:0030529;ribonucleoprotein complex;7.84619480950796e-60!GO:0044237;cellular metabolic process;2.25694550656085e-59!GO:0043170;macromolecule metabolic process;3.05347445269975e-58!GO:0003723;RNA binding;1.25135653434442e-54!GO:0044428;nuclear part;6.56047826725434e-48!GO:0019538;protein metabolic process;1.89621757765674e-46!GO:0043233;organelle lumen;1.01927823439441e-45!GO:0031974;membrane-enclosed lumen;1.01927823439441e-45!GO:0005634;nucleus;3.3477616695005e-44!GO:0005739;mitochondrion;4.16827881626661e-42!GO:0044260;cellular macromolecule metabolic process;1.91555296491092e-41!GO:0006412;translation;9.21903738184038e-41!GO:0044267;cellular protein metabolic process;1.46374410416087e-40!GO:0031090;organelle membrane;6.34807533587888e-39!GO:0033036;macromolecule localization;2.34507757921707e-38!GO:0016043;cellular component organization and biogenesis;9.099848663638e-38!GO:0015031;protein transport;2.34882482725415e-37!GO:0005840;ribosome;1.13282355691453e-36!GO:0045184;establishment of protein localization;1.38790938210113e-36!GO:0043234;protein complex;2.13017447715424e-36!GO:0008104;protein localization;2.71220219821608e-36!GO:0005829;cytosol;3.21352498563848e-34!GO:0003735;structural constituent of ribosome;1.49196003925644e-32!GO:0031967;organelle envelope;4.68267131683416e-32!GO:0031975;envelope;7.98962096324393e-32!GO:0009059;macromolecule biosynthetic process;8.32951691890991e-31!GO:0033279;ribosomal subunit;1.18247626193144e-30!GO:0044429;mitochondrial part;2.08545047411298e-30!GO:0006396;RNA processing;3.98793967735712e-30!GO:0016071;mRNA metabolic process;4.15096812828341e-29!GO:0046907;intracellular transport;6.9249425071883e-29!GO:0065003;macromolecular complex assembly;3.21580904145353e-28!GO:0044249;cellular biosynthetic process;3.99909485518037e-28!GO:0043283;biopolymer metabolic process;1.82803021733633e-27!GO:0031981;nuclear lumen;1.82803021733633e-27!GO:0009058;biosynthetic process;3.18549838749256e-27!GO:0008380;RNA splicing;1.25245230200322e-26!GO:0006886;intracellular protein transport;1.61000912498999e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.44243409825591e-26!GO:0010467;gene expression;7.58671740843635e-25!GO:0022607;cellular component assembly;1.3953518550249e-24!GO:0006397;mRNA processing;1.13328259774389e-23!GO:0012501;programmed cell death;1.87320198666796e-21!GO:0006915;apoptosis;2.84606623338793e-21!GO:0051641;cellular localization;3.46359298735706e-21!GO:0051649;establishment of cellular localization;7.65619129183822e-21!GO:0044445;cytosolic part;1.88127696823586e-20!GO:0008219;cell death;2.97220128239729e-20!GO:0016265;death;2.97220128239729e-20!GO:0005740;mitochondrial envelope;3.20715711516919e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.36063579487377e-19!GO:0031966;mitochondrial membrane;1.6423618084999e-19!GO:0005681;spliceosome;2.17627324516134e-19!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.50885709363359e-19!GO:0008134;transcription factor binding;2.71536789897851e-19!GO:0019866;organelle inner membrane;6.08372388368701e-19!GO:0048770;pigment granule;1.6362423882572e-18!GO:0042470;melanosome;1.6362423882572e-18!GO:0006119;oxidative phosphorylation;6.69625226845289e-18!GO:0005654;nucleoplasm;9.94546061922075e-18!GO:0005743;mitochondrial inner membrane;5.22225595059518e-17!GO:0006996;organelle organization and biogenesis;1.04763954387131e-16!GO:0005783;endoplasmic reticulum;2.4325713130759e-16!GO:0015935;small ribosomal subunit;3.71544623448594e-16!GO:0044265;cellular macromolecule catabolic process;3.80297697675451e-16!GO:0012505;endomembrane system;5.22300442303478e-16!GO:0016192;vesicle-mediated transport;1.31541301514555e-15!GO:0015934;large ribosomal subunit;1.31575311776803e-15!GO:0002376;immune system process;1.41051795322956e-15!GO:0000166;nucleotide binding;2.14635059973757e-15!GO:0022618;protein-RNA complex assembly;1.08628158890592e-14!GO:0044451;nucleoplasm part;1.403713461806e-14!GO:0043285;biopolymer catabolic process;2.73397343421521e-14!GO:0042981;regulation of apoptosis;4.23414825660532e-14!GO:0044455;mitochondrial membrane part;8.39994675476534e-14!GO:0043067;regulation of programmed cell death;8.78466980778697e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.35773373080165e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.38883449388847e-13!GO:0005746;mitochondrial respiratory chain;1.72196833588376e-13!GO:0006913;nucleocytoplasmic transport;2.02152164118999e-13!GO:0019941;modification-dependent protein catabolic process;2.10607334103533e-13!GO:0043632;modification-dependent macromolecule catabolic process;2.10607334103533e-13!GO:0006605;protein targeting;2.18250195358804e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.30045840409675e-13!GO:0044257;cellular protein catabolic process;3.07375286795289e-13!GO:0009057;macromolecule catabolic process;3.27355433247165e-13!GO:0031980;mitochondrial lumen;4.42113963811058e-13!GO:0005759;mitochondrial matrix;4.42113963811058e-13!GO:0051169;nuclear transport;5.70650211432958e-13!GO:0000502;proteasome complex (sensu Eukaryota);6.94897922998818e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.43882324460773e-13!GO:0048523;negative regulation of cellular process;8.3442295152174e-13!GO:0005635;nuclear envelope;9.20413660105933e-13!GO:0044248;cellular catabolic process;1.62104549491276e-12!GO:0005794;Golgi apparatus;1.73239818898866e-12!GO:0006259;DNA metabolic process;1.79682503414347e-12!GO:0043412;biopolymer modification;2.03424513590056e-12!GO:0006457;protein folding;3.71861146524503e-12!GO:0016874;ligase activity;3.79063182973475e-12!GO:0006950;response to stress;4.47896611665688e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.2933771353195e-12!GO:0050136;NADH dehydrogenase (quinone) activity;5.66947640823674e-12!GO:0003954;NADH dehydrogenase activity;5.66947640823674e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.66947640823674e-12!GO:0005773;vacuole;7.60129385605086e-12!GO:0006512;ubiquitin cycle;8.13319432990698e-12!GO:0003676;nucleic acid binding;8.55439754200885e-12!GO:0003712;transcription cofactor activity;1.08887260607546e-11!GO:0044432;endoplasmic reticulum part;1.12047046007746e-11!GO:0043228;non-membrane-bound organelle;1.16739064680347e-11!GO:0043232;intracellular non-membrane-bound organelle;1.16739064680347e-11!GO:0008135;translation factor activity, nucleic acid binding;1.16739064680347e-11!GO:0000323;lytic vacuole;1.65383127157335e-11!GO:0005764;lysosome;1.65383127157335e-11!GO:0006464;protein modification process;1.6561226291653e-11!GO:0031965;nuclear membrane;2.54042544304085e-11!GO:0016462;pyrophosphatase activity;2.95855726836492e-11!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.23830202202505e-11!GO:0030163;protein catabolic process;3.51365085667946e-11!GO:0032553;ribonucleotide binding;3.97007004627476e-11!GO:0032555;purine ribonucleotide binding;3.97007004627476e-11!GO:0043687;post-translational protein modification;4.46074623837531e-11!GO:0006955;immune response;4.57931191774615e-11!GO:0048519;negative regulation of biological process;4.76771845912352e-11!GO:0016817;hydrolase activity, acting on acid anhydrides;4.81462120051918e-11!GO:0006461;protein complex assembly;5.51794178544548e-11!GO:0016604;nuclear body;5.80323495229433e-11!GO:0048193;Golgi vesicle transport;7.25826676491431e-11!GO:0017076;purine nucleotide binding;8.17785706017315e-11!GO:0017111;nucleoside-triphosphatase activity;8.88073990585853e-11!GO:0050794;regulation of cellular process;1.03041075854463e-10!GO:0042775;organelle ATP synthesis coupled electron transport;3.43919926561848e-10!GO:0042773;ATP synthesis coupled electron transport;3.43919926561848e-10!GO:0030964;NADH dehydrogenase complex (quinone);3.93640199093275e-10!GO:0045271;respiratory chain complex I;3.93640199093275e-10!GO:0005747;mitochondrial respiratory chain complex I;3.93640199093275e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;3.98398535817891e-10!GO:0000375;RNA splicing, via transesterification reactions;3.98398535817891e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.98398535817891e-10!GO:0051246;regulation of protein metabolic process;4.33237314544952e-10!GO:0051186;cofactor metabolic process;4.76576060754809e-10!GO:0007243;protein kinase cascade;5.15657136539588e-10!GO:0005730;nucleolus;5.15855320982058e-10!GO:0050789;regulation of biological process;6.3527205720313e-10!GO:0006793;phosphorus metabolic process;7.26251064853494e-10!GO:0006796;phosphate metabolic process;7.26251064853494e-10!GO:0048518;positive regulation of biological process;8.75027398007858e-10!GO:0043069;negative regulation of programmed cell death;9.69750763639402e-10!GO:0017038;protein import;9.69750763639402e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.77097799804251e-10!GO:0043066;negative regulation of apoptosis;1.16402236276095e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.70326401258207e-09!GO:0006916;anti-apoptosis;1.72841920610626e-09!GO:0005793;ER-Golgi intermediate compartment;1.79214962204032e-09!GO:0003743;translation initiation factor activity;1.93518474892318e-09!GO:0044453;nuclear membrane part;2.40077351602801e-09!GO:0006446;regulation of translational initiation;3.06523848219276e-09!GO:0006413;translational initiation;3.10414565292117e-09!GO:0016070;RNA metabolic process;3.96345793391766e-09!GO:0008565;protein transporter activity;4.05008269894158e-09!GO:0051082;unfolded protein binding;5.4436768702577e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.99262136781961e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.33287949369925e-09!GO:0048522;positive regulation of cellular process;6.62667907039574e-09!GO:0005761;mitochondrial ribosome;6.88609010533476e-09!GO:0000313;organellar ribosome;6.88609010533476e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.82016684310294e-09!GO:0005768;endosome;9.71148372843723e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.93896907270373e-09!GO:0006366;transcription from RNA polymerase II promoter;1.4884659537105e-08!GO:0016310;phosphorylation;1.52123814951667e-08!GO:0005789;endoplasmic reticulum membrane;1.53850082822384e-08!GO:0016607;nuclear speck;1.84323791699737e-08!GO:0008639;small protein conjugating enzyme activity;2.82549302523318e-08!GO:0009056;catabolic process;3.78367311681287e-08!GO:0006732;coenzyme metabolic process;3.88275989870775e-08!GO:0051170;nuclear import;4.57130397034057e-08!GO:0019829;cation-transporting ATPase activity;4.88787270927713e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.0479212902919e-08!GO:0004842;ubiquitin-protein ligase activity;5.22403504546783e-08!GO:0006606;protein import into nucleus;5.7728468961303e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.78570873530166e-08!GO:0005643;nuclear pore;6.60492036878024e-08!GO:0016044;membrane organization and biogenesis;7.99453339899974e-08!GO:0031982;vesicle;8.32702613708188e-08!GO:0009055;electron carrier activity;9.94259286424503e-08!GO:0005524;ATP binding;1.05314915073003e-07!GO:0032559;adenyl ribonucleotide binding;1.31898605261276e-07!GO:0009060;aerobic respiration;1.43939045761518e-07!GO:0009259;ribonucleotide metabolic process;1.54809888253545e-07!GO:0065007;biological regulation;2.30333164406498e-07!GO:0007242;intracellular signaling cascade;2.98511139180559e-07!GO:0030554;adenyl nucleotide binding;3.02339393848377e-07!GO:0009150;purine ribonucleotide metabolic process;3.10391314756601e-07!GO:0016564;transcription repressor activity;3.16540503303484e-07!GO:0019787;small conjugating protein ligase activity;3.20740493616923e-07!GO:0006163;purine nucleotide metabolic process;3.26132837587553e-07!GO:0031410;cytoplasmic vesicle;3.45348953743644e-07!GO:0009152;purine ribonucleotide biosynthetic process;3.48999466371097e-07!GO:0006164;purine nucleotide biosynthetic process;4.00563543986614e-07!GO:0015986;ATP synthesis coupled proton transport;4.54667914621613e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.54667914621613e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;4.61577530115324e-07!GO:0009260;ribonucleotide biosynthetic process;4.65988108119757e-07!GO:0005770;late endosome;4.75585083703932e-07!GO:0045333;cellular respiration;7.07731947739264e-07!GO:0019899;enzyme binding;8.5086287706022e-07!GO:0003713;transcription coactivator activity;8.89014470206317e-07!GO:0005839;proteasome core complex (sensu Eukaryota);9.62501228161756e-07!GO:0046930;pore complex;1.02281728233979e-06!GO:0030036;actin cytoskeleton organization and biogenesis;1.34786369150113e-06!GO:0031252;leading edge;1.35978198288856e-06!GO:0006323;DNA packaging;1.51999995231455e-06!GO:0031988;membrane-bound vesicle;1.5629911604049e-06!GO:0006099;tricarboxylic acid cycle;2.46162357627849e-06!GO:0046356;acetyl-CoA catabolic process;2.46162357627849e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.71890077115959e-06!GO:0050657;nucleic acid transport;2.77117729874141e-06!GO:0051236;establishment of RNA localization;2.77117729874141e-06!GO:0050658;RNA transport;2.77117729874141e-06!GO:0030120;vesicle coat;2.86723186325475e-06!GO:0030662;coated vesicle membrane;2.86723186325475e-06!GO:0042254;ribosome biogenesis and assembly;2.90485184143225e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.40032099157311e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.40032099157311e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.40167592376089e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.40167592376089e-06!GO:0006403;RNA localization;3.67121871319858e-06!GO:0065002;intracellular protein transport across a membrane;3.79710381511699e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.44540721970895e-06!GO:0031324;negative regulation of cellular metabolic process;4.45958548924998e-06!GO:0005525;GTP binding;4.4699195231494e-06!GO:0016563;transcription activator activity;5.82861054778957e-06!GO:0048475;coated membrane;5.88934724874317e-06!GO:0030117;membrane coat;5.88934724874317e-06!GO:0030532;small nuclear ribonucleoprotein complex;6.37617325694079e-06!GO:0004298;threonine endopeptidase activity;6.42711850301068e-06!GO:0009199;ribonucleoside triphosphate metabolic process;6.58611877064425e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.58611877064425e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.74441790411413e-06!GO:0009144;purine nucleoside triphosphate metabolic process;6.74441790411413e-06!GO:0016469;proton-transporting two-sector ATPase complex;6.86058074272932e-06!GO:0006888;ER to Golgi vesicle-mediated transport;6.86058074272932e-06!GO:0043566;structure-specific DNA binding;7.16359289077819e-06!GO:0016881;acid-amino acid ligase activity;7.8064854032295e-06!GO:0007264;small GTPase mediated signal transduction;7.85744625962895e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.00293380993318e-06!GO:0042623;ATPase activity, coupled;9.01179362930255e-06!GO:0009615;response to virus;9.91075878385851e-06!GO:0006754;ATP biosynthetic process;1.01438514594513e-05!GO:0006753;nucleoside phosphate metabolic process;1.01438514594513e-05!GO:0043065;positive regulation of apoptosis;1.09356279761589e-05!GO:0051187;cofactor catabolic process;1.14872535230119e-05!GO:0042110;T cell activation;1.1664601644054e-05!GO:0009141;nucleoside triphosphate metabolic process;1.17625060132708e-05!GO:0003714;transcription corepressor activity;1.18277721486052e-05!GO:0051276;chromosome organization and biogenesis;1.19080140102264e-05!GO:0046649;lymphocyte activation;1.23206671367879e-05!GO:0003924;GTPase activity;1.24723920170424e-05!GO:0003697;single-stranded DNA binding;1.36610707171544e-05!GO:0045259;proton-transporting ATP synthase complex;1.38812457047039e-05!GO:0002768;immune response-regulating cell surface receptor signaling pathway;1.42300692717905e-05!GO:0006084;acetyl-CoA metabolic process;1.45087206619709e-05!GO:0051188;cofactor biosynthetic process;1.4911517964426e-05!GO:0006333;chromatin assembly or disassembly;1.54099910802571e-05!GO:0002764;immune response-regulating signal transduction;1.57786100270242e-05!GO:0043068;positive regulation of programmed cell death;1.70446660178121e-05!GO:0044440;endosomal part;1.83284424144334e-05!GO:0010008;endosome membrane;1.83284424144334e-05!GO:0016887;ATPase activity;1.98522344497924e-05!GO:0006917;induction of apoptosis;2.00921142480352e-05!GO:0032446;protein modification by small protein conjugation;2.01303476499488e-05!GO:0009109;coenzyme catabolic process;2.15085499927903e-05!GO:0002253;activation of immune response;2.21080470352678e-05!GO:0051028;mRNA transport;2.26952124082914e-05!GO:0000785;chromatin;2.32241596722371e-05!GO:0046034;ATP metabolic process;2.56458792199999e-05!GO:0030029;actin filament-based process;2.60519988756786e-05!GO:0016787;hydrolase activity;2.6663970504185e-05!GO:0000245;spliceosome assembly;2.69461091886713e-05!GO:0016567;protein ubiquitination;2.70140499888342e-05!GO:0006613;cotranslational protein targeting to membrane;2.84224799499715e-05!GO:0016197;endosome transport;3.00411359289152e-05!GO:0009892;negative regulation of metabolic process;3.21678470524433e-05!GO:0012502;induction of programmed cell death;3.22012316560838e-05!GO:0045321;leukocyte activation;3.62484997642271e-05!GO:0002429;immune response-activating cell surface receptor signaling pathway;3.79418612434857e-05!GO:0048471;perinuclear region of cytoplasm;3.8050879011648e-05!GO:0002757;immune response-activating signal transduction;4.10827512870708e-05!GO:0032561;guanyl ribonucleotide binding;4.50015395861072e-05!GO:0019001;guanyl nucleotide binding;4.50015395861072e-05!GO:0006954;inflammatory response;4.83781064432005e-05!GO:0006897;endocytosis;5.40698010162931e-05!GO:0010324;membrane invagination;5.40698010162931e-05!GO:0016568;chromatin modification;5.46183485971639e-05!GO:0051251;positive regulation of lymphocyte activation;5.61162916447293e-05!GO:0044431;Golgi apparatus part;5.67455520513609e-05!GO:0065004;protein-DNA complex assembly;5.97330175523827e-05!GO:0065009;regulation of a molecular function;6.18401236356199e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.25201211210496e-05!GO:0007049;cell cycle;6.44035149237325e-05!GO:0000151;ubiquitin ligase complex;7.04607535204118e-05!GO:0016481;negative regulation of transcription;7.15488339154198e-05!GO:0006974;response to DNA damage stimulus;7.6681286388115e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.00176158110695e-05!GO:0009117;nucleotide metabolic process;8.27721021663488e-05!GO:0004386;helicase activity;8.38402727857863e-05!GO:0008047;enzyme activator activity;8.96752952948572e-05!GO:0005774;vacuolar membrane;9.0475456104747e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.0001118086951474!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000115378988793216!GO:0008026;ATP-dependent helicase activity;0.000132044190840558!GO:0009966;regulation of signal transduction;0.000138479278633098!GO:0006417;regulation of translation;0.000139999720891611!GO:0048468;cell development;0.000150584077067472!GO:0005798;Golgi-associated vesicle;0.00015137299751838!GO:0005765;lysosomal membrane;0.000158828541667694!GO:0009108;coenzyme biosynthetic process;0.000169114907379638!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000169786102843764!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000187591334982895!GO:0004812;aminoacyl-tRNA ligase activity;0.000187591334982895!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000187591334982895!GO:0019843;rRNA binding;0.000205043741908022!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000226286390072!GO:0050870;positive regulation of T cell activation;0.000229350727843328!GO:0043623;cellular protein complex assembly;0.000229823541707315!GO:0030133;transport vesicle;0.000230005845116847!GO:0009967;positive regulation of signal transduction;0.000256470954198402!GO:0045786;negative regulation of progression through cell cycle;0.000256685222904899!GO:0051726;regulation of cell cycle;0.000260669216218603!GO:0005885;Arp2/3 protein complex;0.000264934613022951!GO:0050851;antigen receptor-mediated signaling pathway;0.000270333033582372!GO:0005694;chromosome;0.000270841349853119!GO:0000074;regulation of progression through cell cycle;0.000273503838243927!GO:0006401;RNA catabolic process;0.000302414458793723!GO:0043038;amino acid activation;0.000318562861465927!GO:0006418;tRNA aminoacylation for protein translation;0.000318562861465927!GO:0043039;tRNA aminoacylation;0.000318562861465927!GO:0001726;ruffle;0.000324808400404892!GO:0018193;peptidyl-amino acid modification;0.000353396215595135!GO:0044437;vacuolar part;0.000408971218536161!GO:0044427;chromosomal part;0.000421757897800999!GO:0060090;molecular adaptor activity;0.000462577416807849!GO:0005788;endoplasmic reticulum lumen;0.000467964643911828!GO:0051168;nuclear export;0.000473454917886366!GO:0016072;rRNA metabolic process;0.000478754669725219!GO:0006364;rRNA processing;0.000491152299852602!GO:0005769;early endosome;0.000531528790715414!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00056585948861466!GO:0030041;actin filament polymerization;0.00062094385978723!GO:0031326;regulation of cellular biosynthetic process;0.000674245753640588!GO:0006334;nucleosome assembly;0.000678462363221521!GO:0005741;mitochondrial outer membrane;0.000686937518953829!GO:0001772;immunological synapse;0.00070564366646509!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.000707813992350901!GO:0002250;adaptive immune response;0.000724288167741589!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.000724288167741589!GO:0001775;cell activation;0.000734326352036829!GO:0009719;response to endogenous stimulus;0.000768584541653711!GO:0030695;GTPase regulator activity;0.000787606427038011!GO:0008654;phospholipid biosynthetic process;0.000789345633880049!GO:0015980;energy derivation by oxidation of organic compounds;0.000918472611846051!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000926359817493318!GO:0030027;lamellipodium;0.000964617862367804!GO:0031902;late endosome membrane;0.000964617862367804!GO:0019867;outer membrane;0.000999047224384395!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00100690091268149!GO:0002443;leukocyte mediated immunity;0.00107117063292498!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.001089098049001!GO:0030867;rough endoplasmic reticulum membrane;0.001089098049001!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00113038055382697!GO:0031968;organelle outer membrane;0.00115533201451426!GO:0051427;hormone receptor binding;0.00119444471799339!GO:0005096;GTPase activator activity;0.00119822776925697!GO:0007005;mitochondrion organization and biogenesis;0.00122174324215626!GO:0006399;tRNA metabolic process;0.00122262298872769!GO:0033116;ER-Golgi intermediate compartment membrane;0.00126203049872342!GO:0007040;lysosome organization and biogenesis;0.00128183051009178!GO:0005762;mitochondrial large ribosomal subunit;0.00128183051009178!GO:0000315;organellar large ribosomal subunit;0.00128183051009178!GO:0000139;Golgi membrane;0.00129919150594392!GO:0008283;cell proliferation;0.00131886586026582!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00145216972678911!GO:0006612;protein targeting to membrane;0.00145468330535855!GO:0044262;cellular carbohydrate metabolic process;0.00145468330535855!GO:0007265;Ras protein signal transduction;0.00146846817318677!GO:0009889;regulation of biosynthetic process;0.00160706599065319!GO:0005667;transcription factor complex;0.00166816788654751!GO:0003724;RNA helicase activity;0.00170720297723308!GO:0009611;response to wounding;0.00172180614418705!GO:0005048;signal sequence binding;0.0017463326356574!GO:0050863;regulation of T cell activation;0.00179854066856825!GO:0051789;response to protein stimulus;0.00181984787832667!GO:0006986;response to unfolded protein;0.00181984787832667!GO:0043021;ribonucleoprotein binding;0.0018354743734333!GO:0006752;group transfer coenzyme metabolic process;0.00183668904590198!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00185406747841626!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00185406747841626!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00185406747841626!GO:0006281;DNA repair;0.00186449142567255!GO:0002252;immune effector process;0.00187696919983906!GO:0003690;double-stranded DNA binding;0.00191924071355219!GO:0006402;mRNA catabolic process;0.00192820553236477!GO:0042101;T cell receptor complex;0.00198776086365801!GO:0005070;SH3/SH2 adaptor activity;0.00199286861282744!GO:0031497;chromatin assembly;0.00201069085263006!GO:0030097;hemopoiesis;0.00206149910966734!GO:0035257;nuclear hormone receptor binding;0.0020987309160577!GO:0006607;NLS-bearing substrate import into nucleus;0.00212735978575788!GO:0045892;negative regulation of transcription, DNA-dependent;0.00212735978575788!GO:0004576;oligosaccharyl transferase activity;0.00219797461049606!GO:0051235;maintenance of localization;0.00231926859983105!GO:0051249;regulation of lymphocyte activation;0.00243387071648881!GO:0005791;rough endoplasmic reticulum;0.00249775782162663!GO:0019222;regulation of metabolic process;0.0026077138616094!GO:0042613;MHC class II protein complex;0.00264229458843628!GO:0045121;lipid raft;0.00268566248048867!GO:0006959;humoral immune response;0.00268566248048867!GO:0043488;regulation of mRNA stability;0.00273364159937145!GO:0043487;regulation of RNA stability;0.00273364159937145!GO:0050865;regulation of cell activation;0.00281615931714069!GO:0022415;viral reproductive process;0.00281615931714069!GO:0046822;regulation of nucleocytoplasmic transport;0.00294644001184448!GO:0007033;vacuole organization and biogenesis;0.00306244317097524!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00313780159507473!GO:0015399;primary active transmembrane transporter activity;0.00313780159507473!GO:0051920;peroxiredoxin activity;0.00316655229788334!GO:0006091;generation of precursor metabolites and energy;0.00317964551517416!GO:0002684;positive regulation of immune system process;0.00318316731993169!GO:0005057;receptor signaling protein activity;0.00332730202227467!GO:0008361;regulation of cell size;0.00335129617604249!GO:0008250;oligosaccharyl transferase complex;0.00343544755950745!GO:0002682;regulation of immune system process;0.00358020891910226!GO:0003729;mRNA binding;0.00358985398207506!GO:0022402;cell cycle process;0.00363374284580311!GO:0006260;DNA replication;0.00365683857937215!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00367216835653576!GO:0009607;response to biotic stimulus;0.00368877180460455!GO:0032940;secretion by cell;0.0036983901187945!GO:0002449;lymphocyte mediated immunity;0.00390654211430661!GO:0016049;cell growth;0.00393012417661811!GO:0030658;transport vesicle membrane;0.00402734048543303!GO:0051252;regulation of RNA metabolic process;0.00408219360736875!GO:0006414;translational elongation;0.00410968405542497!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0042475698413567!GO:0019724;B cell mediated immunity;0.00439427414501917!GO:0005905;coated pit;0.00445982449856881!GO:0019904;protein domain specific binding;0.00466288602055069!GO:0008154;actin polymerization and/or depolymerization;0.00467480258605233!GO:0009165;nucleotide biosynthetic process;0.00472809946078411!GO:0016064;immunoglobulin mediated immune response;0.00479509309889027!GO:0008632;apoptotic program;0.00480492134978792!GO:0050778;positive regulation of immune response;0.00484387479086792!GO:0045454;cell redox homeostasis;0.00497709153642176!GO:0005637;nuclear inner membrane;0.00501774477079606!GO:0002520;immune system development;0.00516473036493861!GO:0016491;oxidoreductase activity;0.00519083344681043!GO:0048500;signal recognition particle;0.00544990086993675!GO:0008092;cytoskeletal protein binding;0.00544990086993675!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00548653288595872!GO:0030118;clathrin coat;0.00562895511047168!GO:0045045;secretory pathway;0.00571337231663229!GO:0009893;positive regulation of metabolic process;0.00574288241302796!GO:0050671;positive regulation of lymphocyte proliferation;0.00586223484707406!GO:0032946;positive regulation of mononuclear cell proliferation;0.00586223484707406!GO:0001558;regulation of cell growth;0.00593219270320706!GO:0050790;regulation of catalytic activity;0.0059705336746276!GO:0016859;cis-trans isomerase activity;0.00632624578181112!GO:0048534;hemopoietic or lymphoid organ development;0.00646328192887567!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00651876041629831!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00656784133651971!GO:0016740;transferase activity;0.00668379389148086!GO:0030176;integral to endoplasmic reticulum membrane;0.00674078992017699!GO:0006611;protein export from nucleus;0.00711073487106098!GO:0017166;vinculin binding;0.00737768699971255!GO:0042802;identical protein binding;0.00746522572334461!GO:0016853;isomerase activity;0.00757788595894968!GO:0005083;small GTPase regulator activity;0.00762398673822021!GO:0008139;nuclear localization sequence binding;0.00775969093635768!GO:0016791;phosphoric monoester hydrolase activity;0.00786988858272688!GO:0030132;clathrin coat of coated pit;0.00791641156389559!GO:0050854;regulation of antigen receptor-mediated signaling pathway;0.00813902247897079!GO:0016779;nucleotidyltransferase activity;0.00825130295317478!GO:0007162;negative regulation of cell adhesion;0.00825978036195186!GO:0019838;growth factor binding;0.00836078786314205!GO:0015036;disulfide oxidoreductase activity;0.00849700004986072!GO:0000059;protein import into nucleus, docking;0.00850916497049508!GO:0008286;insulin receptor signaling pathway;0.0086709440577345!GO:0050776;regulation of immune response;0.0089846470083708!GO:0002521;leukocyte differentiation;0.00907958784732581!GO:0009897;external side of plasma membrane;0.00944931288456527!GO:0022890;inorganic cation transmembrane transporter activity;0.00957646835094158!GO:0030833;regulation of actin filament polymerization;0.00961927792649498!GO:0006509;membrane protein ectodomain proteolysis;0.00961927792649498!GO:0033619;membrane protein proteolysis;0.00961927792649498!GO:0004177;aminopeptidase activity;0.00975929953863744!GO:0051049;regulation of transport;0.0097687181083491!GO:0051059;NF-kappaB binding;0.00989799060081131!GO:0043492;ATPase activity, coupled to movement of substances;0.0104112040374188!GO:0030433;ER-associated protein catabolic process;0.0104300292106237!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0104300292106237!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0104300292106237!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0106704770779725!GO:0045047;protein targeting to ER;0.0106704770779725!GO:0033673;negative regulation of kinase activity;0.0108980731248847!GO:0006469;negative regulation of protein kinase activity;0.0108980731248847!GO:0015992;proton transport;0.010912051360794!GO:0043681;protein import into mitochondrion;0.0110142072840961!GO:0006818;hydrogen transport;0.0112230087111137!GO:0030663;COPI coated vesicle membrane;0.0112642150560272!GO:0030126;COPI vesicle coat;0.0112642150560272!GO:0050853;B cell receptor signaling pathway;0.0116139194919276!GO:0047485;protein N-terminus binding;0.0117459085442193!GO:0006891;intra-Golgi vesicle-mediated transport;0.0119818157842768!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.012043724999898!GO:0030660;Golgi-associated vesicle membrane;0.0121944730373938!GO:0005813;centrosome;0.0121944730373938!GO:0046519;sphingoid metabolic process;0.0123964276489125!GO:0006672;ceramide metabolic process;0.0124658802079283!GO:0018196;peptidyl-asparagine modification;0.0124904874766165!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0124904874766165!GO:0000314;organellar small ribosomal subunit;0.0125527882648561!GO:0005763;mitochondrial small ribosomal subunit;0.0125527882648561!GO:0006650;glycerophospholipid metabolic process;0.0126380706226218!GO:0030518;steroid hormone receptor signaling pathway;0.0127046346834319!GO:0008186;RNA-dependent ATPase activity;0.012965264445022!GO:0030127;COPII vesicle coat;0.012990271092505!GO:0012507;ER to Golgi transport vesicle membrane;0.012990271092505!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0131597340104475!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0131597340104475!GO:0016584;nucleosome positioning;0.0131716535174398!GO:0008312;7S RNA binding;0.0136965868337684!GO:0003702;RNA polymerase II transcription factor activity;0.0136965868337684!GO:0035258;steroid hormone receptor binding;0.0140397104868573!GO:0004185;serine carboxypeptidase activity;0.0143740233119223!GO:0030137;COPI-coated vesicle;0.0146947068565545!GO:0007006;mitochondrial membrane organization and biogenesis;0.0149793316880569!GO:0051540;metal cluster binding;0.0149793316880569!GO:0051536;iron-sulfur cluster binding;0.0149793316880569!GO:0030134;ER to Golgi transport vesicle;0.0149865250848647!GO:0005100;Rho GTPase activator activity;0.0150506266166513!GO:0045309;protein phosphorylated amino acid binding;0.015129310383211!GO:0048002;antigen processing and presentation of peptide antigen;0.0152140809139198!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.015419331806034!GO:0045603;positive regulation of endothelial cell differentiation;0.0157592263522247!GO:0042113;B cell activation;0.0158759998059105!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0159288438625783!GO:0000786;nucleosome;0.0159385676338539!GO:0042102;positive regulation of T cell proliferation;0.0162336418133177!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0166402585011961!GO:0016363;nuclear matrix;0.01703901607443!GO:0004715;non-membrane spanning protein tyrosine kinase activity;0.0177444673970233!GO:0019079;viral genome replication;0.0178070454308348!GO:0001784;phosphotyrosine binding;0.0178654010935316!GO:0006595;polyamine metabolic process;0.0182619015145224!GO:0050852;T cell receptor signaling pathway;0.0183299863268115!GO:0030521;androgen receptor signaling pathway;0.0183332519652218!GO:0005684;U2-dependent spliceosome;0.0183916999787095!GO:0004197;cysteine-type endopeptidase activity;0.0183987692736972!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0187018071668339!GO:0015002;heme-copper terminal oxidase activity;0.0187018071668339!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0187018071668339!GO:0004129;cytochrome-c oxidase activity;0.0187018071668339!GO:0016860;intramolecular oxidoreductase activity;0.0187160898802026!GO:0008629;induction of apoptosis by intracellular signals;0.0188661259970294!GO:0046467;membrane lipid biosynthetic process;0.0194979475516527!GO:0006026;aminoglycan catabolic process;0.0195534926529484!GO:0006027;glycosaminoglycan catabolic process;0.0195534926529484!GO:0001848;complement binding;0.0196502051965044!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0200452824040516!GO:0008234;cysteine-type peptidase activity;0.0203212898981295!GO:0006979;response to oxidative stress;0.0204437202454939!GO:0003899;DNA-directed RNA polymerase activity;0.0207885212106315!GO:0051087;chaperone binding;0.0210465914081753!GO:0051348;negative regulation of transferase activity;0.021473201292417!GO:0016311;dephosphorylation;0.0217977520910634!GO:0006643;membrane lipid metabolic process;0.0218605948415941!GO:0003746;translation elongation factor activity;0.0219323628638591!GO:0016605;PML body;0.0219381847616816!GO:0051101;regulation of DNA binding;0.022067000159554!GO:0030865;cortical cytoskeleton organization and biogenesis;0.022176761865985!GO:0051128;regulation of cellular component organization and biogenesis;0.0225263909188764!GO:0051098;regulation of binding;0.0228183895052767!GO:0016301;kinase activity;0.0234585561578515!GO:0040008;regulation of growth;0.0235114888367458!GO:0046983;protein dimerization activity;0.0239183009425217!GO:0043621;protein self-association;0.0239709817106318!GO:0046474;glycerophospholipid biosynthetic process;0.0239709817106318!GO:0045941;positive regulation of transcription;0.0240799454693793!GO:0031072;heat shock protein binding;0.0243942065210045!GO:0030119;AP-type membrane coat adaptor complex;0.0244370968973125!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0246450197514093!GO:0051223;regulation of protein transport;0.0251379341285392!GO:0051287;NAD binding;0.0253756354133775!GO:0019955;cytokine binding;0.0254283838813281!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0257974909779774!GO:0030155;regulation of cell adhesion;0.0264414577690297!GO:0005099;Ras GTPase activator activity;0.0265293671150942!GO:0004721;phosphoprotein phosphatase activity;0.0265505767621812!GO:0006468;protein amino acid phosphorylation;0.0265505767621812!GO:0032763;regulation of mast cell cytokine production;0.0265505767621812!GO:0032762;mast cell cytokine production;0.0265505767621812!GO:0006740;NADPH regeneration;0.0266591038853207!GO:0006098;pentose-phosphate shunt;0.0266591038853207!GO:0031625;ubiquitin protein ligase binding;0.0266591038853207!GO:0004722;protein serine/threonine phosphatase activity;0.0268339790069396!GO:0030569;chymotrypsin inhibitor activity;0.0271917075873721!GO:0006376;mRNA splice site selection;0.027427962656949!GO:0000389;nuclear mRNA 3'-splice site recognition;0.027427962656949!GO:0007229;integrin-mediated signaling pathway;0.0281479487062493!GO:0048487;beta-tubulin binding;0.0281479487062493!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.029377879005689!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0295819180164574!GO:0051539;4 iron, 4 sulfur cluster binding;0.0297060759218485!GO:0004004;ATP-dependent RNA helicase activity;0.029945280861928!GO:0046426;negative regulation of JAK-STAT cascade;0.0308116192477386!GO:0030100;regulation of endocytosis;0.0311333515564324!GO:0001516;prostaglandin biosynthetic process;0.0315088212832494!GO:0046457;prostanoid biosynthetic process;0.0315088212832494!GO:0031901;early endosome membrane;0.0318830873980411!GO:0000303;response to superoxide;0.0321094523435465!GO:0051283;negative regulation of sequestering of calcium ion;0.0326710971935539!GO:0051282;regulation of sequestering of calcium ion;0.0326710971935539!GO:0051209;release of sequestered calcium ion into cytosol;0.0326710971935539!GO:0007034;vacuolar transport;0.0331903640671238!GO:0030099;myeloid cell differentiation;0.0331903640671238!GO:0030125;clathrin vesicle coat;0.0331903640671238!GO:0030665;clathrin coated vesicle membrane;0.0331903640671238!GO:0006892;post-Golgi vesicle-mediated transport;0.0336257163189305!GO:0000118;histone deacetylase complex;0.0336257163189305!GO:0030131;clathrin adaptor complex;0.0337750769264544!GO:0004674;protein serine/threonine kinase activity;0.0338063661501535!GO:0005832;chaperonin-containing T-complex;0.0340699159592401!GO:0019221;cytokine and chemokine mediated signaling pathway;0.0341497976633868!GO:0050871;positive regulation of B cell activation;0.0345048361873293!GO:0030984;kininogen binding;0.0345048361873293!GO:0004213;cathepsin B activity;0.0345048361873293!GO:0006516;glycoprotein catabolic process;0.0347725184576298!GO:0007009;plasma membrane organization and biogenesis;0.0351143754183316!GO:0045893;positive regulation of transcription, DNA-dependent;0.0357544877445831!GO:0030308;negative regulation of cell growth;0.036112572501655!GO:0032943;mononuclear cell proliferation;0.036112572501655!GO:0046651;lymphocyte proliferation;0.036112572501655!GO:0031349;positive regulation of defense response;0.036112572501655!GO:0050729;positive regulation of inflammatory response;0.036112572501655!GO:0008287;protein serine/threonine phosphatase complex;0.0363422753787624!GO:0033239;negative regulation of amine metabolic process;0.0364260782384098!GO:0045763;negative regulation of amino acid metabolic process;0.0364260782384098!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0364260782384098!GO:0009112;nucleobase metabolic process;0.0369338378296034!GO:0043022;ribosome binding;0.0372867562793327!GO:0045621;positive regulation of lymphocyte differentiation;0.037411401206065!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.037411401206065!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.037411401206065!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.037597878160697!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.037597878160697!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.037597878160697!GO:0030674;protein binding, bridging;0.0384792885123745!GO:0045792;negative regulation of cell size;0.0384792885123745!GO:0045637;regulation of myeloid cell differentiation;0.0385422273553488!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0392069986357481!GO:0045113;regulation of integrin biosynthetic process;0.0392069986357481!GO:0045112;integrin biosynthetic process;0.0392069986357481!GO:0030384;phosphoinositide metabolic process;0.0395970043404852!GO:0045730;respiratory burst;0.0400288687389272!GO:0030522;intracellular receptor-mediated signaling pathway;0.0401058558005906!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0403215031472806!GO:0033157;regulation of intracellular protein transport;0.0404339267086206!GO:0042306;regulation of protein import into nucleus;0.0404339267086206!GO:0019882;antigen processing and presentation;0.0407867288788592!GO:0045058;T cell selection;0.0409162667679009!GO:0005815;microtubule organizing center;0.0409852251507841!GO:0030217;T cell differentiation;0.0413077710073792!GO:0045185;maintenance of protein localization;0.0417301689869293!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0419611134216116!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0419611134216116!GO:0042288;MHC class I protein binding;0.041987706347836!GO:0007041;lysosomal transport;0.0424669733861851!GO:0050178;phenylpyruvate tautomerase activity;0.0429593387033716!GO:0035035;histone acetyltransferase binding;0.0435262306618838!GO:0008147;structural constituent of bone;0.0435771401602265!GO:0005862;muscle thin filament tropomyosin;0.0437369198304599!GO:0051336;regulation of hydrolase activity;0.0438011409178253!GO:0001817;regulation of cytokine production;0.044028554393513!GO:0051219;phosphoprotein binding;0.0446533321455591!GO:0031325;positive regulation of cellular metabolic process;0.0451021482571908!GO:0032507;maintenance of cellular protein localization;0.0452530544115932!GO:0032395;MHC class II receptor activity;0.045366008964485!GO:0051338;regulation of transferase activity;0.045366008964485!GO:0018106;peptidyl-histidine phosphorylation;0.0459117675381704!GO:0016581;NuRD complex;0.0460973541305964!GO:0046790;virion binding;0.0462740052026495!GO:0008097;5S rRNA binding;0.046674525158604!GO:0006487;protein amino acid N-linked glycosylation;0.046736280604031!GO:0005784;translocon complex;0.0473734795411279!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0474280175835801!GO:0006984;ER-nuclear signaling pathway;0.048031756034901!GO:0030911;TPR domain binding;0.048031756034901!GO:0051090;regulation of transcription factor activity;0.0480491197468409!GO:0001816;cytokine production;0.048322598568769!GO:0004214;dipeptidyl-peptidase I activity;0.048322598568769!GO:0030098;lymphocyte differentiation;0.04889095075249!GO:0045646;regulation of erythrocyte differentiation;0.0494208252066759 | |||
|sample_id=10077 | |sample_id=10077 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=lymph node | |sample_tissue=lymph node | ||
|top_motifs=POU5F1:2.01834602736;POU2F1..3:1.897519883;SPZ1:1.7640012877;AIRE:1.63907917516;GATA4:1.62188350623;ETS1,2:1.50558849082;SPIB:1.48436970767;RXRA_VDR{dimer}:1.45561299243;FOXD3:1.43042707736;IKZF2:1.4152215341;IRF1,2:1.40812329154;ELF1,2,4:1.39615330395;SPI1:1.29054507525;TFAP4:1.26227545567;IRF7:1.2447089488;NFATC1..3:1.17533633051;AR:1.16269517551;TLX2:1.15002923632;STAT1,3:1.06597725677;T:1.0230633541;RUNX1..3:0.98770885643;RBPJ:0.955238278751;DMAP1_NCOR{1,2}_SMARC:0.884447296815;FOXO1,3,4:0.87884287215;BPTF:0.852191751102;MYFfamily:0.84261376297;NR1H4:0.840535219156;STAT2,4,6:0.831137784084;HNF4A_NR2F1,2:0.819634336269;FOX{D1,D2}:0.816380126829;SMAD1..7,9:0.816053421739;MTF1:0.788028216164;ZNF384:0.746192659038;PATZ1:0.735994117238;PRDM1:0.668653481814;FOXA2:0.653351266322;TFCP2:0.64702179794;BREu{core}:0.646573198406;PAX3,7:0.615647485292;GCM1,2:0.606618064072;HMX1:0.601584586118;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.600454003654;NKX6-1,2:0.579984225498;TGIF1:0.534506526372;TOPORS:0.515114164102;SREBF1,2:0.483747866619;MZF1:0.457526377355;SRF:0.444235475403;EP300:0.429602872304;XCPE1{core}:0.403093599691;ESR1:0.380784971966;EN1,2:0.369279056036;GATA6:0.361078855219;LMO2:0.357887098035;NKX3-2:0.314618520822;ZBTB16:0.303917918358;TBP:0.303533337876;EGR1..3:0.285317857139;ALX1:0.265818331078;MTE{core}:0.253949427835;TFAP2{A,C}:0.237809480007;SP1:0.22210150924;RREB1:0.214088280942;HAND1,2:0.203362437434;CDX1,2,4:0.200343270039;ZEB1:0.198784240756;EBF1:0.190418229325;FOX{F1,F2,J1}:0.179821716293;TEF:0.168220335147;CEBPA,B_DDIT3:0.150061903297;SNAI1..3:0.125169970793;HIF1A:0.122886227633;MYOD1:0.119332602656;MED-1{core}:0.110457692191;NR6A1:0.105798555552;PITX1..3:0.0992563960776;FOXP3:0.0973601707294;EVI1:0.0942499262344;MAZ:0.0866782487844;NANOG{mouse}:0.0786790001584;CRX:0.0637564921628;NR3C1:0.0560206483222;FOXP1:0.0428078910017;TFAP2B:0.0382235405524;GZF1:0.0361640600132;SOX5:0.0113210386535;KLF4:-0.0043920240724;NFKB1_REL_RELA:-0.00592377392409;ALX4:-0.017586104597;ZFP161:-0.0335147943783;NR5A1,2:-0.035057984518;MAFB:-0.0436461049361;HMGA1,2:-0.0479979557375;GFI1B:-0.0888065984712;GTF2I:-0.0913270029585;PAX6:-0.0955031032286;LHX3,4:-0.107955558023;GLI1..3:-0.112192094485;POU6F1:-0.117795137736;ZNF148:-0.128923816106;PAX5:-0.130880347598;HIC1:-0.140666266302;ATF6:-0.144986074917;IKZF1:-0.178262784177;AHR_ARNT_ARNT2:-0.186189797116;UFEwm:-0.198773458079;ZNF423:-0.202269414291;OCT4_SOX2{dimer}:-0.2137709928;ATF2:-0.256511832505;TLX1..3_NFIC{dimer}:-0.268455576419;NFIL3:-0.271196306562;HNF1A:-0.278663387891;TAL1_TCF{3,4,12}:-0.290227139284;ATF4:-0.329027970745;REST:-0.343570419609;RXR{A,B,G}:-0.361225534464;ZNF238:-0.36235000287;PPARG:-0.391626838195;ADNP_IRX_SIX_ZHX:-0.426066054943;CREB1:-0.451199621571;HES1:-0.468243294498;LEF1_TCF7_TCF7L1,2:-0.474103720337;VSX1,2:-0.479387294941;RFX2..5_RFXANK_RFXAP:-0.490274638925;PAX2:-0.535650997891;MEF2{A,B,C,D}:-0.539163924166;HLF:-0.547452609723;NFE2L1:-0.568041966493;DBP:-0.612664881829;ATF5_CREB3:-0.61726129727;NFE2L2:-0.620138997294;GTF2A1,2:-0.622316459456;NHLH1,2:-0.630278720051;HBP1_HMGB_SSRP1_UBTF:-0.650865672468;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.660581123005;NFY{A,B,C}:-0.680965934756;YY1:-0.694360847594;FOXN1:-0.697885057068;SOX2:-0.702209203817;TFDP1:-0.704945880004;TEAD1:-0.711836077872;ZNF143:-0.717909490183;CUX2:-0.71976054987;E2F1..5:-0.74634415564;FOX{I1,J2}:-0.747193167653;NKX2-3_NKX2-5:-0.760405228841;POU1F1:-0.772687977315;FOXL1:-0.779108462809;PAX1,9:-0.786074884251;FOXQ1:-0.789075640626;MYBL2:-0.813589955819;FOS_FOS{B,L1}_JUN{B,D}:-0.838405698642;NFE2:-0.848985971919;SOX{8,9,10}:-0.862131913841;NKX2-2,8:-0.863920331795;MYB:-0.866039712997;SOX17:-0.900385670638;RORA:-0.914264958916;ZBTB6:-0.921976877101;NKX2-1,4:-0.925608820732;PBX1:-0.931750778254;JUN:-0.934185248077;BACH2:-0.948567084385;ELK1,4_GABP{A,B1}:-0.949089191928;STAT5{A,B}:-0.950866097982;FOXM1:-0.951280161065;XBP1:-0.9695278933;NRF1:-0.986228069917;FOSL2:-1.02862769676;HOX{A4,D4}:-1.03962135623;bHLH_family:-1.0461548323;POU3F1..4:-1.04781315883;PRRX1,2:-1.1174605262;GFI1:-1.15594362719;ZIC1..3:-1.15950985941;HOX{A6,A7,B6,B7}:-1.20981480483;PDX1:-1.25458246678;TP53:-1.26243351672;CDC5L:-1.29277566681;HOX{A5,B5}:-1.32452206548;NANOG:-1.33994876445;RFX1:-1.47258944438;ARID5B:-1.48445243127;ESRRA:-1.5861666854;ONECUT1,2:-1.67568138891;HSF1,2:-1.67678483182;NKX3-1:-1.75376597429;NFIX:-1.84595975809;PAX8:-1.96006051725;TBX4,5:-2.18200195131;PAX4:-2.18522943695;HOXA9_MEIS1:-2.22606484692 | |top_motifs=POU5F1:2.01834602736;POU2F1..3:1.897519883;SPZ1:1.7640012877;AIRE:1.63907917516;GATA4:1.62188350623;ETS1,2:1.50558849082;SPIB:1.48436970767;RXRA_VDR{dimer}:1.45561299243;FOXD3:1.43042707736;IKZF2:1.4152215341;IRF1,2:1.40812329154;ELF1,2,4:1.39615330395;SPI1:1.29054507525;TFAP4:1.26227545567;IRF7:1.2447089488;NFATC1..3:1.17533633051;AR:1.16269517551;TLX2:1.15002923632;STAT1,3:1.06597725677;T:1.0230633541;RUNX1..3:0.98770885643;RBPJ:0.955238278751;DMAP1_NCOR{1,2}_SMARC:0.884447296815;FOXO1,3,4:0.87884287215;BPTF:0.852191751102;MYFfamily:0.84261376297;NR1H4:0.840535219156;STAT2,4,6:0.831137784084;HNF4A_NR2F1,2:0.819634336269;FOX{D1,D2}:0.816380126829;SMAD1..7,9:0.816053421739;MTF1:0.788028216164;ZNF384:0.746192659038;PATZ1:0.735994117238;PRDM1:0.668653481814;FOXA2:0.653351266322;TFCP2:0.64702179794;BREu{core}:0.646573198406;PAX3,7:0.615647485292;GCM1,2:0.606618064072;HMX1:0.601584586118;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.600454003654;NKX6-1,2:0.579984225498;TGIF1:0.534506526372;TOPORS:0.515114164102;SREBF1,2:0.483747866619;MZF1:0.457526377355;SRF:0.444235475403;EP300:0.429602872304;XCPE1{core}:0.403093599691;ESR1:0.380784971966;EN1,2:0.369279056036;GATA6:0.361078855219;LMO2:0.357887098035;NKX3-2:0.314618520822;ZBTB16:0.303917918358;TBP:0.303533337876;EGR1..3:0.285317857139;ALX1:0.265818331078;MTE{core}:0.253949427835;TFAP2{A,C}:0.237809480007;SP1:0.22210150924;RREB1:0.214088280942;HAND1,2:0.203362437434;CDX1,2,4:0.200343270039;ZEB1:0.198784240756;EBF1:0.190418229325;FOX{F1,F2,J1}:0.179821716293;TEF:0.168220335147;CEBPA,B_DDIT3:0.150061903297;SNAI1..3:0.125169970793;HIF1A:0.122886227633;MYOD1:0.119332602656;MED-1{core}:0.110457692191;NR6A1:0.105798555552;PITX1..3:0.0992563960776;FOXP3:0.0973601707294;EVI1:0.0942499262344;MAZ:0.0866782487844;NANOG{mouse}:0.0786790001584;CRX:0.0637564921628;NR3C1:0.0560206483222;FOXP1:0.0428078910017;TFAP2B:0.0382235405524;GZF1:0.0361640600132;SOX5:0.0113210386535;KLF4:-0.0043920240724;NFKB1_REL_RELA:-0.00592377392409;ALX4:-0.017586104597;ZFP161:-0.0335147943783;NR5A1,2:-0.035057984518;MAFB:-0.0436461049361;HMGA1,2:-0.0479979557375;GFI1B:-0.0888065984712;GTF2I:-0.0913270029585;PAX6:-0.0955031032286;LHX3,4:-0.107955558023;GLI1..3:-0.112192094485;POU6F1:-0.117795137736;ZNF148:-0.128923816106;PAX5:-0.130880347598;HIC1:-0.140666266302;ATF6:-0.144986074917;IKZF1:-0.178262784177;AHR_ARNT_ARNT2:-0.186189797116;UFEwm:-0.198773458079;ZNF423:-0.202269414291;OCT4_SOX2{dimer}:-0.2137709928;ATF2:-0.256511832505;TLX1..3_NFIC{dimer}:-0.268455576419;NFIL3:-0.271196306562;HNF1A:-0.278663387891;TAL1_TCF{3,4,12}:-0.290227139284;ATF4:-0.329027970745;REST:-0.343570419609;RXR{A,B,G}:-0.361225534464;ZNF238:-0.36235000287;PPARG:-0.391626838195;ADNP_IRX_SIX_ZHX:-0.426066054943;CREB1:-0.451199621571;HES1:-0.468243294498;LEF1_TCF7_TCF7L1,2:-0.474103720337;VSX1,2:-0.479387294941;RFX2..5_RFXANK_RFXAP:-0.490274638925;PAX2:-0.535650997891;MEF2{A,B,C,D}:-0.539163924166;HLF:-0.547452609723;NFE2L1:-0.568041966493;DBP:-0.612664881829;ATF5_CREB3:-0.61726129727;NFE2L2:-0.620138997294;GTF2A1,2:-0.622316459456;NHLH1,2:-0.630278720051;HBP1_HMGB_SSRP1_UBTF:-0.650865672468;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.660581123005;NFY{A,B,C}:-0.680965934756;YY1:-0.694360847594;FOXN1:-0.697885057068;SOX2:-0.702209203817;TFDP1:-0.704945880004;TEAD1:-0.711836077872;ZNF143:-0.717909490183;CUX2:-0.71976054987;E2F1..5:-0.74634415564;FOX{I1,J2}:-0.747193167653;NKX2-3_NKX2-5:-0.760405228841;POU1F1:-0.772687977315;FOXL1:-0.779108462809;PAX1,9:-0.786074884251;FOXQ1:-0.789075640626;MYBL2:-0.813589955819;FOS_FOS{B,L1}_JUN{B,D}:-0.838405698642;NFE2:-0.848985971919;SOX{8,9,10}:-0.862131913841;NKX2-2,8:-0.863920331795;MYB:-0.866039712997;SOX17:-0.900385670638;RORA:-0.914264958916;ZBTB6:-0.921976877101;NKX2-1,4:-0.925608820732;PBX1:-0.931750778254;JUN:-0.934185248077;BACH2:-0.948567084385;ELK1,4_GABP{A,B1}:-0.949089191928;STAT5{A,B}:-0.950866097982;FOXM1:-0.951280161065;XBP1:-0.9695278933;NRF1:-0.986228069917;FOSL2:-1.02862769676;HOX{A4,D4}:-1.03962135623;bHLH_family:-1.0461548323;POU3F1..4:-1.04781315883;PRRX1,2:-1.1174605262;GFI1:-1.15594362719;ZIC1..3:-1.15950985941;HOX{A6,A7,B6,B7}:-1.20981480483;PDX1:-1.25458246678;TP53:-1.26243351672;CDC5L:-1.29277566681;HOX{A5,B5}:-1.32452206548;NANOG:-1.33994876445;RFX1:-1.47258944438;ARID5B:-1.48445243127;ESRRA:-1.5861666854;ONECUT1,2:-1.67568138891;HSF1,2:-1.67678483182;NKX3-1:-1.75376597429;NFIX:-1.84595975809;PAX8:-1.96006051725;TBX4,5:-2.18200195131;PAX4:-2.18522943695;HOXA9_MEIS1:-2.22606484692 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10077-102A5;search_select_hide=table117:FF:10077-102A5 | |||
}} | }} | ||
Latest revision as of 12:20, 3 June 2020
| Name: | lymph node, adult, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11788 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11788
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11788
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.964 |
| 10 | 10 | 0.643 |
| 100 | 100 | 0.507 |
| 101 | 101 | 0.398 |
| 102 | 102 | 0.983 |
| 103 | 103 | 0.379 |
| 104 | 104 | 0.94 |
| 105 | 105 | 0.211 |
| 106 | 106 | 4.93633e-4 |
| 107 | 107 | 0.0038 |
| 108 | 108 | 0.602 |
| 109 | 109 | 0.578 |
| 11 | 11 | 0.193 |
| 110 | 110 | 0.779 |
| 111 | 111 | 0.317 |
| 112 | 112 | 0.057 |
| 113 | 113 | 0.00518 |
| 114 | 114 | 0.785 |
| 115 | 115 | 0.539 |
| 116 | 116 | 0.989 |
| 117 | 117 | 0.664 |
| 118 | 118 | 0.671 |
| 119 | 119 | 0.359 |
| 12 | 12 | 0.399 |
| 120 | 120 | 0.23 |
| 121 | 121 | 0.613 |
| 122 | 122 | 0.988 |
| 123 | 123 | 0.272 |
| 124 | 124 | 0.482 |
| 125 | 125 | 0.216 |
| 126 | 126 | 0.363 |
| 127 | 127 | 0.259 |
| 128 | 128 | 0.0636 |
| 129 | 129 | 0.159 |
| 13 | 13 | 0.296 |
| 130 | 130 | 0.403 |
| 131 | 131 | 0.285 |
| 132 | 132 | 0.107 |
| 133 | 133 | 0.0695 |
| 134 | 134 | 0.777 |
| 135 | 135 | 0.0379 |
| 136 | 136 | 0.309 |
| 137 | 137 | 0.292 |
| 138 | 138 | 0.27 |
| 139 | 139 | 0.139 |
| 14 | 14 | 0.313 |
| 140 | 140 | 0.889 |
| 141 | 141 | 0.345 |
| 142 | 142 | 0.328 |
| 143 | 143 | 0.11 |
| 144 | 144 | 0.564 |
| 145 | 145 | 0.0599 |
| 146 | 146 | 0.738 |
| 147 | 147 | 0.298 |
| 148 | 148 | 0.1 |
| 149 | 149 | 0.0338 |
| 15 | 15 | 0.666 |
| 150 | 150 | 0.278 |
| 151 | 151 | 0.564 |
| 152 | 152 | 0.0727 |
| 153 | 153 | 0.337 |
| 154 | 154 | 0.715 |
| 155 | 155 | 0.191 |
| 156 | 156 | 0.583 |
| 157 | 157 | 0.482 |
| 158 | 158 | 0.751 |
| 159 | 159 | 0.775 |
| 16 | 16 | 0.918 |
| 160 | 160 | 0.461 |
| 161 | 161 | 0.878 |
| 162 | 162 | 0.644 |
| 163 | 163 | 0.154 |
| 164 | 164 | 0.974 |
| 165 | 165 | 0.345 |
| 166 | 166 | 0.966 |
| 167 | 167 | 0.345 |
| 168 | 168 | 0.0118 |
| 169 | 169 | 0.0061 |
| 17 | 17 | 0.608 |
| 18 | 18 | 0.993 |
| 19 | 19 | 0.191 |
| 2 | 2 | 0.031 |
| 20 | 20 | 0.197 |
| 21 | 21 | 0.483 |
| 22 | 22 | 0.19 |
| 23 | 23 | 0.425 |
| 24 | 24 | 0.728 |
| 25 | 25 | 0.736 |
| 26 | 26 | 0.3 |
| 27 | 27 | 0.00175 |
| 28 | 28 | 0.633 |
| 29 | 29 | 0.851 |
| 3 | 3 | 0.128 |
| 30 | 30 | 0.644 |
| 31 | 31 | 0.407 |
| 32 | 32 | 0.868 |
| 33 | 33 | 0.302 |
| 34 | 34 | 0.0917 |
| 35 | 35 | 0.436 |
| 36 | 36 | 0.878 |
| 37 | 37 | 0.825 |
| 38 | 38 | 0.722 |
| 39 | 39 | 0.742 |
| 4 | 4 | 0.426 |
| 40 | 40 | 0.859 |
| 41 | 41 | 0.45 |
| 42 | 42 | 0.602 |
| 43 | 43 | 0.254 |
| 44 | 44 | 0.0235 |
| 45 | 45 | 0.208 |
| 46 | 46 | 0.314 |
| 47 | 47 | 0.944 |
| 48 | 48 | 0.313 |
| 49 | 49 | 0.236 |
| 5 | 5 | 0.958 |
| 50 | 50 | 0.304 |
| 51 | 51 | 0.613 |
| 52 | 52 | 0.313 |
| 53 | 53 | 0.0963 |
| 54 | 54 | 0.395 |
| 55 | 55 | 0.276 |
| 56 | 56 | 0.954 |
| 57 | 57 | 0.555 |
| 58 | 58 | 0.187 |
| 59 | 59 | 0.0921 |
| 6 | 6 | 0.438 |
| 60 | 60 | 0.0428 |
| 61 | 61 | 0.175 |
| 62 | 62 | 0.198 |
| 63 | 63 | 0.533 |
| 64 | 64 | 0.743 |
| 65 | 65 | 0.234 |
| 66 | 66 | 0.0282 |
| 67 | 67 | 0.499 |
| 68 | 68 | 0.404 |
| 69 | 69 | 0.564 |
| 7 | 7 | 0.745 |
| 70 | 70 | 0.732 |
| 71 | 71 | 0.499 |
| 72 | 72 | 0.0504 |
| 73 | 73 | 0.426 |
| 74 | 74 | 0.403 |
| 75 | 75 | 0.852 |
| 76 | 76 | 0.733 |
| 77 | 77 | 0.124 |
| 78 | 78 | 0.164 |
| 79 | 79 | 0.107 |
| 8 | 8 | 0.211 |
| 80 | 80 | 0.00524 |
| 81 | 81 | 0.442 |
| 82 | 82 | 0.0336 |
| 83 | 83 | 0.123 |
| 84 | 84 | 0.154 |
| 85 | 85 | 0.148 |
| 86 | 86 | 0.237 |
| 87 | 87 | 0.626 |
| 88 | 88 | 0.533 |
| 89 | 89 | 0.863 |
| 9 | 9 | 0.165 |
| 90 | 90 | 0.881 |
| 91 | 91 | 0.183 |
| 92 | 92 | 0.114 |
| 93 | 93 | 0.255 |
| 94 | 94 | 0.726 |
| 95 | 95 | 0.701 |
| 96 | 96 | 0.922 |
| 97 | 97 | 0.41 |
| 98 | 98 | 0.842 |
| 99 | 99 | 0.811 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11788
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000029 (lymph node)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002465 (lymphoid system)
0002193 (hemolymphoid system)
0002405 (immune system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010077 (human lymph node - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
