FF:10069-101I6: Difference between revisions

Latest revision as of 12:19, 3 June 2020

Name:	diaphragm, fetal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11779
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	diaphragm
dev stage	36 weeks fetus
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	A912092
catalog number	Cat:RtHFN: Diaphragm
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005626

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11779		CAGE		DRX008642		DRR009514

Accession ID Hg19

Library id		BAM		CTSS
CNhs11779		DRZ000939		DRZ002324

Accession ID Hg38

Library id		BAM		CTSS
CNhs11779		DRZ012289		DRZ013674

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.603
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.253
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0.608
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.445
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	1.271
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.122
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.624
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.416
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0.416
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.765
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0.128
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.599
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	1.324
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.253
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.256
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.256
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.256
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0663
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.45
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.532
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.256
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.416
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	1.166
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.256
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.846
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	1.058
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	1.058
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0.416
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0.624
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11779

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	4.36784e-4
MA0003.1	MA0003.1	0.229
MA0004.1	MA0004.1	0.00726
MA0006.1	MA0006.1	0.947
MA0007.1	MA0007.1	0.403
MA0009.1	MA0009.1	0.0629
MA0014.1	MA0014.1	0.412
MA0017.1	MA0017.1	0.934
MA0018.2	MA0018.2	0.381
MA0019.1	MA0019.1	0.621
MA0024.1	MA0024.1	0.0199
MA0025.1	MA0025.1	0.163
MA0027.1	MA0027.1	0.929
MA0028.1	MA0028.1	3.30551e-10
MA0029.1	MA0029.1	0.756
MA0030.1	MA0030.1	0.278
MA0031.1	MA0031.1	0.102
MA0035.2	MA0035.2	0.0463
MA0038.1	MA0038.1	0.0133
MA0039.2	MA0039.2	3.14907e-4
MA0040.1	MA0040.1	0.526
MA0041.1	MA0041.1	0.683
MA0042.1	MA0042.1	0.834
MA0043.1	MA0043.1	0.0108
MA0046.1	MA0046.1	5.58323e-4
MA0047.2	MA0047.2	0.135
MA0048.1	MA0048.1	0.0642
MA0050.1	MA0050.1	0.00798
MA0051.1	MA0051.1	0.016
MA0052.1	MA0052.1	2.1144e-24
MA0055.1	MA0055.1	0.00334
MA0057.1	MA0057.1	0.738
MA0058.1	MA0058.1	0.00149
MA0059.1	MA0059.1	0.00197
MA0060.1	MA0060.1	2.34876e-6
MA0061.1	MA0061.1	2.40422e-6
MA0062.2	MA0062.2	3.32754e-19
MA0065.2	MA0065.2	0.253
MA0066.1	MA0066.1	0.552
MA0067.1	MA0067.1	0.0659
MA0068.1	MA0068.1	0.0189
MA0069.1	MA0069.1	0.517
MA0070.1	MA0070.1	0.277
MA0071.1	MA0071.1	0.235
MA0072.1	MA0072.1	0.645
MA0073.1	MA0073.1	0.294
MA0074.1	MA0074.1	0.68
MA0076.1	MA0076.1	4.5515e-14
MA0077.1	MA0077.1	0.401
MA0078.1	MA0078.1	0.694
MA0079.2	MA0079.2	0.704
MA0080.2	MA0080.2	1.1842e-7
MA0081.1	MA0081.1	0.02
MA0083.1	MA0083.1	0.00154
MA0084.1	MA0084.1	0.145
MA0087.1	MA0087.1	0.335
MA0088.1	MA0088.1	0.115
MA0090.1	MA0090.1	0.368
MA0091.1	MA0091.1	0.0104
MA0092.1	MA0092.1	0.192
MA0093.1	MA0093.1	0.00459
MA0099.2	MA0099.2	6.66126e-20
MA0100.1	MA0100.1	0.0357
MA0101.1	MA0101.1	2.3876e-5
MA0102.2	MA0102.2	0.00771
MA0103.1	MA0103.1	0.0271
MA0104.2	MA0104.2	2.89158e-4
MA0105.1	MA0105.1	6.93453e-6
MA0106.1	MA0106.1	7.79244e-4
MA0107.1	MA0107.1	1.80682e-5
MA0108.2	MA0108.2	9.88476e-13
MA0111.1	MA0111.1	0.676
MA0112.2	MA0112.2	0.0356
MA0113.1	MA0113.1	0.0599
MA0114.1	MA0114.1	0.413
MA0115.1	MA0115.1	0.704
MA0116.1	MA0116.1	0.00358
MA0117.1	MA0117.1	0.286
MA0119.1	MA0119.1	0.0783
MA0122.1	MA0122.1	0.275
MA0124.1	MA0124.1	0.646
MA0125.1	MA0125.1	0.912
MA0131.1	MA0131.1	0.211
MA0135.1	MA0135.1	0.39
MA0136.1	MA0136.1	7.12446e-13
MA0137.2	MA0137.2	0.201
MA0138.2	MA0138.2	0.447
MA0139.1	MA0139.1	0.00257
MA0140.1	MA0140.1	0.127
MA0141.1	MA0141.1	0.178
MA0142.1	MA0142.1	4.27514e-4
MA0143.1	MA0143.1	0.0923
MA0144.1	MA0144.1	0.438
MA0145.1	MA0145.1	0.445
MA0146.1	MA0146.1	0.155
MA0147.1	MA0147.1	2.39298e-4
MA0148.1	MA0148.1	0.263
MA0149.1	MA0149.1	0.101
MA0150.1	MA0150.1	1.94337e-7
MA0152.1	MA0152.1	0.0476
MA0153.1	MA0153.1	0.772
MA0154.1	MA0154.1	0.0741
MA0155.1	MA0155.1	0.0956
MA0156.1	MA0156.1	1.88442e-16
MA0157.1	MA0157.1	0.122
MA0159.1	MA0159.1	0.958
MA0160.1	MA0160.1	0.911
MA0162.1	MA0162.1	0.437
MA0163.1	MA0163.1	0.137
MA0164.1	MA0164.1	0.813
MA0258.1	MA0258.1	0.0121
MA0259.1	MA0259.1	0.0951

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11779

Novel motif	Logo	P-value
1	1	0.667
10	10	0.2
100	100	0.845
101	101	0.276
102	102	0.491
103	103	0.48
104	104	0.735
105	105	0.808
106	106	0.667
107	107	0.0998
108	108	0.106
109	109	0.00657
11	11	0.721
110	110	0.637
111	111	0.959
112	112	0.728
113	113	0.00192
114	114	0.306
115	115	0.087
116	116	0.0621
117	117	0.0222
118	118	0.0194
119	119	0.232
12	12	0.729
120	120	0.291
121	121	0.85
122	122	0.00187
123	123	0.354
124	124	0.323
125	125	0.867
126	126	0.603
127	127	0.543
128	128	0.358
129	129	0.719
13	13	0.432
130	130	0.464
131	131	0.274
132	132	0.0224
133	133	0.0374
134	134	0.841
135	135	0.0837
136	136	0.0799
137	137	0.698
138	138	0.951
139	139	0.135
14	14	0.934
140	140	0.511
141	141	0.699
142	142	0.387
143	143	0.0501
144	144	0.504
145	145	0.946
146	146	0.587
147	147	0.0115
148	148	0.23
149	149	0.196
15	15	0.233
150	150	0.665
151	151	0.539
152	152	0.797
153	153	0.372
154	154	0.66
155	155	0.401
156	156	0.798
157	157	0.902
158	158	0.53
159	159	0.968
16	16	0.595
160	160	0.437
161	161	0.141
162	162	0.559
163	163	0.184
164	164	0.317
165	165	0.0351
166	166	0.0253
167	167	0.333
168	168	0.379
169	169	0.848
17	17	0.62
18	18	0.32
19	19	0.0261
2	2	0.0637
20	20	0.0247
21	21	0.489
22	22	0.982
23	23	0.353
24	24	0.0114
25	25	0.567
26	26	0.241
27	27	0.482
28	28	0.398
29	29	0.026
3	3	0.647
30	30	0.189
31	31	0.256
32	32	5.7549e-8
33	33	0.179
34	34	0.246
35	35	0.864
36	36	0.149
37	37	0.21
38	38	0.838
39	39	0.101
4	4	0.708
40	40	0.162
41	41	0.34
42	42	0.216
43	43	0.657
44	44	0.0799
45	45	0.463
46	46	0.762
47	47	0.207
48	48	0.204
49	49	0.953
5	5	0.696
50	50	0.826
51	51	0.912
52	52	0.222
53	53	0.644
54	54	0.854
55	55	0.255
56	56	0.345
57	57	0.866
58	58	0.623
59	59	0.79
6	6	0.629
60	60	0.223
61	61	0.33
62	62	0.965
63	63	0.547
64	64	0.424
65	65	0.689
66	66	0.00464
67	67	0.482
68	68	0.36
69	69	0.514
7	7	0.954
70	70	0.719
71	71	0.147
72	72	0.366
73	73	0.185
74	74	0.406
75	75	0.0525
76	76	0.251
77	77	0.433
78	78	0.641
79	79	0.132
8	8	0.993
80	80	0.151
81	81	0.727
82	82	0.592
83	83	0.687
84	84	0.903
85	85	0.00377
86	86	0.87
87	87	0.00286
88	88	0.928
89	89	0.36
9	9	0.767
90	90	0.699
91	91	0.0534
92	92	0.234
93	93	0.896
94	94	0.0921
95	95	0.00116
96	96	0.884
97	97	0.944
98	98	0.806
99	99	0.0609

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11779

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010069 human diaphragm - fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001134 (skeletal muscle tissue)
0002100 (trunk)
0000479 (tissue)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002426 (chest muscle)
0003831 (respiratory system muscle)
0003898 (skeletal muscle of trunk)
0004830 (respiratory system skeletal muscle)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0005090 (muscle structure)
0001630 (muscle organ)
0005177 (trunk region element)
0003830 (thoracic segment muscle)
0005175 (chest organ)
0001774 (muscle of trunk)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0001103 (diaphragm)
0001004 (respiratory system)
0002204 (musculoskeletal system)
0001443 (chest)
0000383 (musculature of body)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010069 (human diaphragm - fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001134,UBERON:0002100,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0002553,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0009569,UBERON:0005291,UBERON:0002426,UBERON:0003831,UBERON:0003898,UBERON:0004830,UBERON:0002036,UBERON:0002385,UBERON:0002323,UBERON:0001630,UBERON:0005090,UBERON:0005177,UBERON:0000486,UBERON:0003104,UBERON:0000464,UBERON:0004458,UBERON:0000914,UBERON:0001774,UBERON:0003830,UBERON:0005175,UBERON:0005256,UBERON:0005181,UBERON:0006598,UBERON:0003886,UBERON:0003897,UBERON:0001015,UBERON:0002532,UBERON:0002329,UBERON:0001103,UBERON:0001004,UBERON:0002204,UBERON:0001443,UBERON:0000383,UBERON:0000915,UBERON:0003077,UBERON:0004290,UBERON:0009142,UBERON:0006603,UBERON:0010084,UBERON:0003082,UBERON:0003059,UBERON:0007282,UBERON:0009618,UBERON:0007285
+|DRA_sample_Accession=CAGE@SAMD00005626
+|accession_numbers=CAGE;DRX008642;DRR009514;DRZ000939;DRZ002324;DRZ012289;DRZ013674
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001134,UBERON:0002100,UBERON:0000479,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002426,UBERON:0003831,UBERON:0003898,UBERON:0004830,UBERON:0002036,UBERON:0002385,UBERON:0005090,UBERON:0001630,UBERON:0005177,UBERON:0003830,UBERON:0005175,UBERON:0001774,UBERON:0005181,UBERON:0010317,UBERON:0001015,UBERON:0001103,UBERON:0001004,UBERON:0002204,UBERON:0001443,UBERON:0000383,UBERON:0000915
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010069
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:52437488..52437507,+!p2@NR4A1!2.65!443.02!NR4A1;;chr15:42749722..42749739,-!p2@ZFP106!2.24!298.56!ZFP106;;chr20:62680984..62680999,-!p1@SOX18!2.08!156.50!SOX18;;chr8:25902876..25902936,-!p1@EBF2!1.92!81.86!EBF2;;chr19:46801639..46801699,+!p1@HIF3A!1.91!79.46!HIF3A;;chr1:203055129..203055147,-!p1@MYOG!1.73!52.97!MYOG;;chr9:102584159..102584174,+!p2@NR4A3!1.68!82.67!NR4A3;;chr1:214161272..214161322,+!p1@PROX1!1.67!63.40!PROX1;;chr12:52445218..52445237,+!p1@NR4A1!1.65!524.08!NR4A1;;chr1:40105299..40105326,-!p1@HEYL!1.65!43.34!HEYL;;chr20:50179368..50179392,-!p2@NFATC2!1.61!50.56!NFATC2;;chr21:39870339..39870443,-!p1@ERG!1.61!40.13!ERG;;chr12:54779511..54779577,-!p5@ZNF385A!1.61!40.13!ZNF385A;;chr7:15726296..15726315,-!p1@MEOX2!1.61!39.33!MEOX2;;chr2:19558373..19558392,-!p1@OSR1!1.60!103.53!OSR1;;chr12:81101404..81101421,+!p1@MYF6!1.59!37.72!MYF6;;chr19:2867325..2867348,+!p1@ZNF556!1.59!37.72!ZNF556;;chr22:19748231..19748317,+!p1@TBX1!1.57!36.12!TBX1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.57!36.12!PEG3;;chr10:131762504..131762555,-!p1@EBF3!1.54!33.71!EBF3;;chr5:158526917..158526932,-!p1@EBF1!1.51!76.24!EBF1;;chr11:113930425..113930471,+!p1@ZBTB16!1.50!43.34!ZBTB16;;chr12:81101472..81101483,+!p2@MYF6!1.50!30.50!MYF6;;chr8:106330656..106330684,+!p1@ZFPM2!1.49!76.24!ZFPM2;;chr8:10588010..10588030,-!p1@SOX7!1.46!28.09!SOX7;;chr8:55370487..55370503,+!p1@SOX17!1.46!28.09!SOX17;;chr19:46800289..46800327,+!p2@HIF3A!1.46!28.09!HIF3A;;chr1:170632285..170632309,+!p1@PRRX1!1.42!28.89!PRRX1;;chr1:119530493..119530572,-!p1@TBX15!1.39!23.27!TBX15;;chr7:73038839..73038862,-!p1@MLXIPL!1.39!23.27!MLXIPL;;chr18:53068911..53068935,-!p4@TCF4!1.38!25.68!TCF4;;chr8:106330696..106330719,+!p2@ZFPM2!1.34!26.49!ZFPM2;;chr6:144329384..144329405,-!p1@PLAGL1!1.32!225.52!PLAGL1;;chr18:77155922..77155939,+!p1@NFATC1!1.32!53.77!NFATC1;;chr1:151804244..151804310,-!p1@RORC!1.32!20.06!RORC;;chr6:144289132..144289134,-!p3@PLAGL1!1.31!44.14!PLAGL1;;chr7:15726243..15726293,-!p2@MEOX2!1.31!19.26!MEOX2;;chr11:12766597..12766618,+!p11@TEAD1!1.31!19.26!TEAD1;;chr16:79634624..79634642,-!p1@MAF!1.30!73.03!MAF;;chr17:1959369..1959388,+!p2@HIC1!1.30!48.96!HIC1;;chr2:68592406..68592424,+!p1@PLEK!1.29!18.46!PLEK;;chr20:590944..590960,-!p1@TCF15!1.27!17.66!TCF15;;chr16:85932760..85932775,+!p1@IRF8!1.25!16.85!IRF8;;chrY:21906594..21906622,-!p1@KDM5D!1.25!16.85!KDM5D;;chr13:72441315..72441454,-!p1@DACH1!1.22!31.30!DACH1;;chr17:53342311..53342400,+!p1@HLF!1.22!17.66!HLF;;chr1:170633348..170633399,+!p2@PRRX1!1.21!20.87!PRRX1;;chr20:51588873..51588953,+!p1@TSHZ2!1.21!20.06!TSHZ2;;chr2:242556880..242556899,-!p5@THAP4!1.21!15.25!THAP4;;chr1:170633262..170633285,+!p3@PRRX1!1.20!16.85!PRRX1;;chr5:88178983..88179012,-!p1@MEF2C!1.19!109.95!MEF2C;;chr9:14314131..14314147,-!p2@NFIB!1.19!79.46!NFIB;;chr8:22550982..22550999,-!p1@EGR3!1.19!40.93!EGR3;;chr16:79634595..79634620,-!p2@MAF!1.19!26.49!MAF;;chr3:21792585..21792625,-!p2@ZNF385D!1.19!16.05!ZNF385D;;chr1:216978721..216978728,-!p13@ESRRG!1.19!14.45!ESRRG;;chr14:75745523..75745537,+!p1@FOS!1.18!1670.16!FOS;;chr5:137804484..137804498,+!p2@EGR1!1.18!56.98!EGR1;;chr14:61116183..61116208,-!p1@SIX1!1.18!53.77!SIX1;;chr2:157189180..157189290,-!p1@NR4A2!1.17!71.43!NR4A2;;chr11:125034640..125034655,+!p1@PKNOX2!1.17!13.64!PKNOX2;;chr5:158527104..158527135,-!p4@EBF1!1.17!13.64!EBF1;;chr2:145277882..145277967,-!p3@ZEB2!1.16!23.27!ZEB2;;chr6:126070769..126070801,+!p1@HEY2!1.15!15.25!HEY2;;chr1:61548225..61548299,+!p1@NFIA!1.14!166.13!NFIA;;chr8:93115274..93115323,-!p4@RUNX1T1!1.14!12.84!RUNX1T1;;chr16:30389131..30389144,+!p16@ZNF48!1.14!12.84!ZNF48;;chr15:96873984..96873999,+!p3@NR2F2!1.12!89.09!NR2F2;;chr3:126076242..126076257,-!p1@KLF15!1.12!15.25!KLF15;;chr3:169381420..169381535,-!p1@MECOM!1.12!14.45!MECOM;;chr7:15726176..15726191,-!p3@MEOX2!1.12!12.04!MEOX2;;chr1:10856639..10856662,-!p2@CASZ1!1.12!12.04!CASZ1;;chr14:73360799..73360817,-!p1@DPF3!1.11!41.73!DPF3;;chr1:61548069..61548102,+!p3@NFIA!1.11!28.89!NFIA;;chr18:52989031..52989079,-!p2@TCF4!1.10!27.29!TCF4;;chr3:114343768..114343822,-!p1@ZBTB20!1.09!49.76!ZBTB20;;chr2:223163706..223163730,-!p1@PAX3!1.09!11.24!PAX3;;chr17:6926362..6926377,+!p1@BCL6B!1.09!11.24!BCL6B;;chr1:170633058..170633084,+!p5@PRRX1!1.09!11.24!PRRX1;;chr9:14313641..14313652,-!p13@NFIB!1.09!11.24!NFIB;;chr7:150945754..150945789,-!p2@SMARCD3!1.08!34.51!SMARCD3;;chr17:46126136..46126152,+!p1@NFE2L1!1.07!556.99!NFE2L1;;chr18:22932080..22932170,-!p1@ZNF521!1.07!45.75!ZNF521;;chr19:16435625..16435682,+!p1@KLF2!1.06!339.49!KLF2;;chr17:41739283..41739297,-!p1@MEOX1!1.06!10.43!MEOX1;;chr7:15726220..15726236,-!p4@MEOX2!1.06!10.43!MEOX2;;chr3:189348969..189349018,+!p4@TP63!1.06!10.43!TP63;;chr11:128457446..128457461,-!p4@ETS1!1.06!10.43!ETS1;;chr11:16627614..16627651,-!p4@SOX6!1.06!10.43!SOX6;;chr12:54447637..54447659,+!p4@HOXC4!1.06!10.43!HOXC4;;chr9:102584262..102584276,+!p1@NR4A3!1.05!23.27!NR4A3;;chr1:61548374..61548415,+!p4@NFIA!1.05!19.26!NFIA;;chr4:87928413..8792843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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/diaphragm%252c%2520fetal%252c%2520donor1.CNhs11779.10069-101I6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/diaphragm%252c%2520fetal%252c%2520donor1.CNhs11779.10069-101I6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/diaphragm%252c%2520fetal%252c%2520donor1.CNhs11779.10069-101I6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/diaphragm%252c%2520fetal%252c%2520donor1.CNhs11779.10069-101I6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/diaphragm%252c%2520fetal%252c%2520donor1.CNhs11779.10069-101I6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10069-101I6
-|is_a=EFO:0002091;;FF:0000004;;FF:0000210;;FF:0010069
+|is_a=EFO:0002091;;FF:0010069
+|is_obsolete=
+|library_id=CNhs11779
+|library_id_phase_based=2:CNhs11779
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10069
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10069
 |name=diaphragm, fetal, donor1
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11779,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=101
 |rna_catalog_number=Cat:RtHFN: Diaphragm
@@ Line 57: / Line 78: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 77: / Line 99: @@
 |sample_tissue=diaphragm
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10069-101I6;search_select_hide=table117:FF:10069-101I6
 }}

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FF:10069-101I6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:19, 3 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0