FF:10059-101H5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005093 | ||
|accession_numbers=CAGE;DRX008751;DRR009623;DRZ001048;DRZ002433;DRZ012398;DRZ013783 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001723,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000020,UBERON:0001032,UBERON:0010317,UBERON:0001555,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0004456,UBERON:0001033 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010059 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/tongue%252c%2520fetal%252c%2520donor1.CNhs11768.10059-101H5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/tongue%252c%2520fetal%252c%2520donor1.CNhs11768.10059-101H5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/tongue%252c%2520fetal%252c%2520donor1.CNhs11768.10059-101H5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/tongue%252c%2520fetal%252c%2520donor1.CNhs11768.10059-101H5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/tongue%252c%2520fetal%252c%2520donor1.CNhs11768.10059-101H5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10059-101H5 | |id=FF:10059-101H5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010059 | ||
|is_obsolete= | |||
|library_id=CNhs11768 | |||
|library_id_phase_based=2:CNhs11768 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10059 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10059 | |||
|name=tongue, fetal, donor1 | |name=tongue, fetal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11768,LSID820,release009,COMPLETED | |profile_hcage=CNhs11768,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.063914004774844,0,0,1.32616712449595,0,-0.160318030086386,0.226462404668981,-0.195090843406787,0.808700532213707,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331460663388072,0,0,0,0,0,0.882310633551958,0,0,0.96865069845619,0,0,0,0,0,0,0.063914004774844,0,0,0,0,0,-0.0460981153978351,0.433156190456668,0,0,0,0,0,0,0,-0.0242150211128343,0,0.0134810903451038,0,0.374552815304851,0.127828009549688,0.116061863104232,0.127828009549688,0.898557976567192,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117180645352657,0.0582400517598948,0.063914004774844,0,0.0426599700654486,0.0528315587944953,0.188345687457929,0.063914004774844,0.127828009549688,0,0,0.128427053431275,0.487048805559816,0,0,0,0,0,0,0.127828009549688,0,0,0,0,0,0,0,0,0,0,0.169086785739535,0.226462404668981,0,0,0,-0.0477352370374442,0,0.127828009549688,0.264197786725986,0,0,0 | |||
|repeat_enrich_byname=0,0.226462404668981,0,0,0.128427053431275,0,0,0,0,0,0.127828009549688,0,0,0.127828009549688,0,0,0.460969941515421,0,0.010697454984491,0.0829472621455095,0,0,0.118849576539154,0,0.374552815304851,0,0,0.226462404668981,0,0.127828009549688,0,0.127828009549688,-0.000291857402876322,0,0.480508207734676,0,0,0,0,0,-0.0790098262294259,0,0.131077327120026,0.238445185687341,0,0.0493436942809027,0,0,0.010251430668854,0,0.00694852575594773,-0.0827201683234173,0.726378905235406,0.356384250776372,-0.04680465889238,0,0,0,-0.0494750397431981,0.158625295742163,0,0,-0.121779851751874,0.104962269258648,0,0,1.27012955724204,0.374552815304851,0.200235204617324,0.025349229568191,0,0.171497057201674,0,0,0,0,0,0,0.127828009549688,0,0,0,0,0.387807302558961,-0.02019914991426,0,0,0,0.0833276583188963,0.052614276830436,0.127828009549688,0.0216207304676774,0.272365286793225,0.0939168202542289,-0.0218219143063494,-0.112906258777013,0.00754062348341825,0.228531032314077,0.0676534966048206,0.204360823046545,0.0528315587944953,-0.147401849371139,0.184571095755004,0.122591194064044,0.297883142843509,0.22404001388401,0.0812726521414652,0.0495776395793697,0.0292700092032533,0.0426599700654486,0.102280874167712,0,0,0.127828009549688,0.524458502903799,0.0297864763164843,0,0.490153815343242,-0.126876167339822,0.0823945707422986,0.323416961247387,0.161762914880035,-0.0337368701112808,0.856246197388231,0.506992864451166,0.118946174444336,0.529352523791029,0.105653121589734,0.572623775638614,0.0720354908080988,0.0207764292636915,0.224400535890699,0.0298252695711122,0,0.224171354990005,-0.0683442610773682,0.177145207109335,-0.028075309117433,0.329510006589529,0,0.117786575856021,0.183996298339694,0,0.178825160282868,0,0.013574088336739,0.306789446764709,-0.0873764703234934,0.106159299719625,0.0739338852091641,0,-0.106753377745699,-0.0449068247228787,0.0255396410223091,0.0750627910477731,0.0109804446635845,0.184730862386584,0,0.238286954727755,0.0412964886935312,-0.0890250338015332,0.0910464664111051,0.101899403167417,0.150228970246876,-0.0584468268118252,0.334331568970152,0.125274186942655,-0.0728272096750917,0.141965002740969,0.113694265874118,0.674646696735818,0.196142507515803,0.0473601170128151,0.175426986440186,0.0717527530595447,0.0500901910354771,0.433156190456668,-0.284374477108005,0.980268529820016,0.334343743396272,0,-0.117192601455765,0.58408347719093,0.599122758236203,0.10329249112953,0,0.474506621728831,1.17094556982336,0.00832272999856398,-0.0470239777227406,0.073872678568149,0.433156190456668,-0.150367083334639,0.215423483236301,0.384815817404153,0.0144052667031599,0,0.0435746803033241,0,0,0.103249278508555,0.249307635972111,0.127828009549688,0.149768854924205,0.178505421145822,0.308903408553589,0.45665270220368,0.226462404668981,0,0.0906190932133829,0,0.4847836737365,0.740785981355565,0.0642231644118867,0.0582400517598948,-0.253326341486756,0.0518820941149125,1.16703176690264,0.00330313140922567,0.127828009549688,0.307255907771324,0.127828009549688,0.0292976365155652,0,0,-0.0333032013704895,-0.116628112990133,0,0.063914004774844,0.374552815304851,0,0,0,0,0,0.0249632892144615,0,0.127828009549688,0.424778334491508,-0.354833330216448,0.374552815304851,-0.174899094350472,0,0,0,0,0,0.0625617972318118,0,0.913119449748884,-0.0497407063111244,0.0569772467772665,0.103444988992561,0,0,0,0,0.356900373085139,0.103552884669985,0.226462404668981,-0.00403469694794334,0,0.286311887819307,0,0,-0.0861409897892114,0,0,0,0,0.168731947615317,0.217083213316198,0,0,0.063914004774844,0.747635206450652,0,0,0,0.0998240244725285,0.149820706999494,0,0,0,0,0.181583032385469,-0.0815818795468414,0,-0.0628057008035769,-0.619561886238684,-0.0200180505072336,0,0.127828009549688,0.47497229941622,0,0,-0.0113547135808054,0,0.226462404668981,0,0,0,0.063914004774844,0,0,0,0.160238302905095,0,0,0.127828009549688,0,0,0,0,0,0,0,0,0.195309585936147,0.035603952891178,0.226462404668981,0,0,0.127828009549688,0,0,0,0.536412408601524,0.360791252031332,0,0,0,0,0,0,0,0,0.316282395695976,0,0,0,0,0,0.898557976567192,0,0.127828009549688,0,0.127828009549688,1.0447772887888,0,0,-0.277362132193514,0,0,0,0,0,0,0,0.0169023591697216,0,0,0,0,0,0.103143318633534,-0.195090843406787,0,0,0,0,0,0.226462404668981,0,0.209950375530409,0,0.572623775638614,0,0,0.112578030960004,0,0,0,-0.104796384789156,0,-0.160318030086386,1.32616712449595,0,0,0,0,0.130502997295395,0,0,0,0,0,0,0,0,0,0,0,0,0.063914004774844,0,0.036146059715142,-0.0191870838637349,0.154171436146775,0.175180887303814,0.0544061565187046,0,0,0.121446055767451,0,0,0,0,0,0,0.0818907783059635,0.07254841311035,0,0,0.226462404668981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226462404668981,0,0,0,0,0,0,0.130236433378979,0,0,0,0,0,0,0,0.882310633551958,0,0,0.0613619135818285,0,0,0,0,0,0.0428564690812795,-0.0455850037884597,0.046588897739677,0.145140287489393,0.127828009549688,0,1.42037273977792,0.122759634626879,0.374552815304851,0.0300922520277845,0.0837926854999493,0.127828009549688,0.061050622130787,0,0,0,0,0,0,0,0,0.127828009549688,0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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:RtHFN: Tongue | |rna_catalog_number=Cat:RtHFN: Tongue | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=A? | |sample_ethnicity=A? | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.9465489360252e-206!GO:0005737;cytoplasm;1.08846917299567e-200!GO:0043226;organelle;5.46255610638146e-151!GO:0043229;intracellular organelle;1.24355589772917e-150!GO:0044444;cytoplasmic part;7.79523749213408e-141!GO:0043231;intracellular membrane-bound organelle;3.04557276404836e-118!GO:0043227;membrane-bound organelle;4.16547132687445e-118!GO:0044422;organelle part;1.47479151892603e-106!GO:0044446;intracellular organelle part;2.0909229139402e-105!GO:0005515;protein binding;2.46088829522648e-95!GO:0032991;macromolecular complex;1.27646241089864e-87!GO:0005739;mitochondrion;1.11476238714382e-72!GO:0030529;ribonucleoprotein complex;2.02782879724405e-62!GO:0043233;organelle lumen;4.92633291670196e-51!GO:0031974;membrane-enclosed lumen;4.92633291670196e-51!GO:0044429;mitochondrial part;2.9503364989693e-50!GO:0044237;cellular metabolic process;1.33728682653313e-48!GO:0043234;protein complex;2.09673308298836e-48!GO:0044238;primary metabolic process;5.51191089051186e-48!GO:0043170;macromolecule metabolic process;3.02208366772772e-47!GO:0019538;protein metabolic process;2.17052332282859e-45!GO:0005840;ribosome;3.1998694799479e-43!GO:0043228;non-membrane-bound organelle;1.49338212176599e-41!GO:0043232;intracellular non-membrane-bound organelle;1.49338212176599e-41!GO:0003723;RNA binding;6.92945842098876e-41!GO:0031967;organelle envelope;1.63644184103743e-40!GO:0044260;cellular macromolecule metabolic process;2.58639510590759e-40!GO:0031975;envelope;3.17002118328222e-40!GO:0016043;cellular component organization and biogenesis;2.744472349112e-39!GO:0044428;nuclear part;1.0100068952425e-38!GO:0044267;cellular protein metabolic process;1.83743872129923e-38!GO:0031090;organelle membrane;1.93300052172226e-38!GO:0003735;structural constituent of ribosome;2.89004247077282e-38!GO:0006412;translation;3.6565511100766e-37!GO:0005829;cytosol;1.23548791334768e-34!GO:0005634;nucleus;6.52189323299498e-33!GO:0005740;mitochondrial envelope;2.59488901612455e-32!GO:0033279;ribosomal subunit;5.33282518840242e-32!GO:0031966;mitochondrial membrane;2.25700632449238e-31!GO:0019866;organelle inner membrane;8.65621491151334e-31!GO:0033036;macromolecule localization;3.20732159304798e-30!GO:0015031;protein transport;1.50114963698855e-29!GO:0005743;mitochondrial inner membrane;5.35785380755466e-29!GO:0008104;protein localization;1.40160830079531e-28!GO:0009059;macromolecule biosynthetic process;1.44320413843051e-28!GO:0045184;establishment of protein localization;3.14392601701675e-28!GO:0009058;biosynthetic process;5.36746590311488e-27!GO:0044249;cellular biosynthetic process;8.91899352555649e-27!GO:0008380;RNA splicing;4.16602269585619e-26!GO:0022607;cellular component assembly;7.00254191190734e-26!GO:0065003;macromolecular complex assembly;7.00254191190734e-26!GO:0044455;mitochondrial membrane part;9.25727029125292e-26!GO:0006119;oxidative phosphorylation;3.12242160838941e-25!GO:0016071;mRNA metabolic process;3.67799558106983e-25!GO:0006396;RNA processing;6.84734781967739e-25!GO:0046907;intracellular transport;5.23737022102553e-24!GO:0005746;mitochondrial respiratory chain;5.357519686691e-23!GO:0031980;mitochondrial lumen;7.25453920515169e-23!GO:0005759;mitochondrial matrix;7.25453920515169e-23!GO:0031981;nuclear lumen;7.26666713213762e-23!GO:0008092;cytoskeletal protein binding;1.30380145251246e-21!GO:0006397;mRNA processing;2.14544462490036e-21!GO:0006886;intracellular protein transport;3.07681812618351e-21!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.45660935736389e-20!GO:0006996;organelle organization and biogenesis;3.66736811411901e-20!GO:0043283;biopolymer metabolic process;6.57626608680945e-20!GO:0050136;NADH dehydrogenase (quinone) activity;4.22446189297667e-19!GO:0003954;NADH dehydrogenase activity;4.22446189297667e-19!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.22446189297667e-19!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.67718125826751e-18!GO:0010467;gene expression;2.41119627406573e-18!GO:0044445;cytosolic part;5.07099925294038e-18!GO:0044449;contractile fiber part;5.07099925294038e-18!GO:0043292;contractile fiber;7.01177157368289e-18!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.30336482976602e-17!GO:0005681;spliceosome;3.39220432332852e-17!GO:0030964;NADH dehydrogenase complex (quinone);5.14712612736842e-17!GO:0045271;respiratory chain complex I;5.14712612736842e-17!GO:0005747;mitochondrial respiratory chain complex I;5.14712612736842e-17!GO:0042775;organelle ATP synthesis coupled electron transport;5.57052342260821e-17!GO:0042773;ATP synthesis coupled electron transport;5.57052342260821e-17!GO:0015935;small ribosomal subunit;9.95315678497278e-17!GO:0008134;transcription factor binding;1.38559694499988e-16!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.82213973394471e-16!GO:0015934;large ribosomal subunit;2.04334166271631e-16!GO:0015629;actin cytoskeleton;9.68951600779629e-16!GO:0005761;mitochondrial ribosome;1.14885697151446e-15!GO:0000313;organellar ribosome;1.14885697151446e-15!GO:0048770;pigment granule;1.20596372421692e-15!GO:0042470;melanosome;1.20596372421692e-15!GO:0005654;nucleoplasm;2.51746318042913e-15!GO:0007517;muscle development;2.53705011561002e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.93694856136568e-15!GO:0005783;endoplasmic reticulum;3.08546400511238e-15!GO:0030016;myofibril;1.19672166140806e-14!GO:0051641;cellular localization;1.32028415809871e-14!GO:0006457;protein folding;2.66701372341417e-14!GO:0051649;establishment of cellular localization;2.6839737678187e-14!GO:0051186;cofactor metabolic process;4.36104111124795e-14!GO:0008307;structural constituent of muscle;4.80712529578369e-14!GO:0005856;cytoskeleton;4.80911625476566e-14!GO:0022618;protein-RNA complex assembly;5.40985358220085e-14!GO:0006512;ubiquitin cycle;6.51590176673671e-14!GO:0044451;nucleoplasm part;1.49145151128168e-13!GO:0048523;negative regulation of cellular process;5.40297178309846e-13!GO:0030017;sarcomere;5.58177982037793e-13!GO:0044265;cellular macromolecule catabolic process;7.64843936710964e-13!GO:0008135;translation factor activity, nucleic acid binding;7.84621736152551e-13!GO:0000502;proteasome complex (sensu Eukaryota);8.44168077880509e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;1.20897164597251e-12!GO:0003779;actin binding;1.60607050422531e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.64319575870438e-12!GO:0019941;modification-dependent protein catabolic process;2.22246064103638e-12!GO:0043632;modification-dependent macromolecule catabolic process;2.22246064103638e-12!GO:0044257;cellular protein catabolic process;3.70040309359839e-12!GO:0006605;protein targeting;6.20225655216947e-12!GO:0012505;endomembrane system;7.28944980219993e-12!GO:0043412;biopolymer modification;1.02600198418956e-11!GO:0048519;negative regulation of biological process;1.295791584946e-11!GO:0006464;protein modification process;1.64944745384084e-11!GO:0043687;post-translational protein modification;2.66258938128253e-11!GO:0005794;Golgi apparatus;2.76489667888729e-11!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.98386527704519e-11!GO:0009055;electron carrier activity;4.15925094227861e-11!GO:0045333;cellular respiration;5.58432916303421e-11!GO:0048193;Golgi vesicle transport;7.64520827729993e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);9.59219591890351e-11!GO:0044248;cellular catabolic process;1.0023500836112e-10!GO:0006732;coenzyme metabolic process;1.30029284087076e-10!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.5593113751764e-10!GO:0016462;pyrophosphatase activity;1.99485477877309e-10!GO:0003712;transcription cofactor activity;2.02212689681726e-10!GO:0016817;hydrolase activity, acting on acid anhydrides;2.07615686809303e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.69790374120195e-10!GO:0006461;protein complex assembly;2.7579013525946e-10!GO:0017111;nucleoside-triphosphatase activity;4.00830990978852e-10!GO:0051082;unfolded protein binding;4.26108894925234e-10!GO:0015980;energy derivation by oxidation of organic compounds;4.44316054975558e-10!GO:0009060;aerobic respiration;5.31763739891374e-10!GO:0016192;vesicle-mediated transport;5.95221892618231e-10!GO:0016874;ligase activity;7.08675063763015e-10!GO:0006366;transcription from RNA polymerase II promoter;7.12805881462122e-10!GO:0006446;regulation of translational initiation;7.64537070768599e-10!GO:0000166;nucleotide binding;7.64537070768599e-10!GO:0009057;macromolecule catabolic process;8.74038545694531e-10!GO:0008565;protein transporter activity;1.04605647393332e-09!GO:0030163;protein catabolic process;1.86713776776322e-09!GO:0044432;endoplasmic reticulum part;2.36137173882229e-09!GO:0005635;nuclear envelope;2.75228160516979e-09!GO:0006413;translational initiation;2.85856257472788e-09!GO:0043285;biopolymer catabolic process;2.95712677584368e-09!GO:0015078;hydrogen ion transmembrane transporter activity;4.5120234935976e-09!GO:0003743;translation initiation factor activity;4.92878555403424e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.23019585524182e-09!GO:0005793;ER-Golgi intermediate compartment;8.06826478705004e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;1.1861935661407e-08!GO:0000375;RNA splicing, via transesterification reactions;1.1861935661407e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.1861935661407e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.23341973125276e-08!GO:0006099;tricarboxylic acid cycle;1.31247771821038e-08!GO:0046356;acetyl-CoA catabolic process;1.31247771821038e-08!GO:0014706;striated muscle development;1.31607729016445e-08!GO:0031965;nuclear membrane;1.87338740534066e-08!GO:0006084;acetyl-CoA metabolic process;2.51968242736607e-08!GO:0012501;programmed cell death;3.19514030367242e-08!GO:0019829;cation-transporting ATPase activity;3.22087804179572e-08!GO:0016564;transcription repressor activity;3.95780792976282e-08!GO:0006915;apoptosis;5.12767764259001e-08!GO:0030036;actin cytoskeleton organization and biogenesis;6.18650945922165e-08!GO:0006259;DNA metabolic process;8.34486319632729e-08!GO:0015986;ATP synthesis coupled proton transport;1.09774919283043e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.09774919283043e-07!GO:0006913;nucleocytoplasmic transport;1.16656224640779e-07!GO:0009109;coenzyme catabolic process;1.16966648685771e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.32026092411275e-07!GO:0006163;purine nucleotide metabolic process;1.38821862847638e-07!GO:0051246;regulation of protein metabolic process;1.43144111059286e-07!GO:0005730;nucleolus;1.43801792952265e-07!GO:0030029;actin filament-based process;1.61209402820528e-07!GO:0016604;nuclear body;1.78492884782542e-07!GO:0008639;small protein conjugating enzyme activity;2.14906639754518e-07!GO:0017038;protein import;2.28533228420525e-07!GO:0051169;nuclear transport;2.70262882208923e-07!GO:0051187;cofactor catabolic process;3.18984288388648e-07!GO:0008219;cell death;3.32875403362737e-07!GO:0016265;death;3.32875403362737e-07!GO:0007010;cytoskeleton organization and biogenesis;3.75868580341206e-07!GO:0045259;proton-transporting ATP synthase complex;3.75868580341206e-07!GO:0007049;cell cycle;4.51157286013364e-07!GO:0019787;small conjugating protein ligase activity;4.63682556653779e-07!GO:0004842;ubiquitin-protein ligase activity;4.63682556653779e-07!GO:0009150;purine ribonucleotide metabolic process;5.6634086400648e-07!GO:0031674;I band;6.57032927585998e-07!GO:0006091;generation of precursor metabolites and energy;6.75889925931118e-07!GO:0003924;GTPase activity;7.04329656418917e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.62805984277117e-07!GO:0046034;ATP metabolic process;9.63269947743286e-07!GO:0051188;cofactor biosynthetic process;1.02670177539828e-06!GO:0031988;membrane-bound vesicle;1.212868452194e-06!GO:0005788;endoplasmic reticulum lumen;1.22186027613999e-06!GO:0016607;nuclear speck;1.2387049683544e-06!GO:0016529;sarcoplasmic reticulum;1.25569296160348e-06!GO:0016528;sarcoplasm;1.25569296160348e-06!GO:0031982;vesicle;1.26708902409477e-06!GO:0006793;phosphorus metabolic process;1.26950352573941e-06!GO:0006796;phosphate metabolic process;1.26950352573941e-06!GO:0045786;negative regulation of progression through cell cycle;1.26950352573941e-06!GO:0007519;skeletal muscle development;1.35365889222997e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.4586801528897e-06!GO:0009259;ribonucleotide metabolic process;1.6079855179309e-06!GO:0006164;purine nucleotide biosynthetic process;1.77833788003086e-06!GO:0003012;muscle system process;1.87074538369076e-06!GO:0006936;muscle contraction;1.87074538369076e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.96861477435624e-06!GO:0031410;cytoplasmic vesicle;2.15201692460241e-06!GO:0042802;identical protein binding;2.22289044656417e-06!GO:0017076;purine nucleotide binding;2.45868067817982e-06!GO:0032553;ribonucleotide binding;2.46984503060131e-06!GO:0032555;purine ribonucleotide binding;2.46984503060131e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.46984503060131e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.46984503060131e-06!GO:0007005;mitochondrion organization and biogenesis;2.93914953936216e-06!GO:0009199;ribonucleoside triphosphate metabolic process;3.12725627768674e-06!GO:0009141;nucleoside triphosphate metabolic process;3.20587292081058e-06!GO:0016481;negative regulation of transcription;3.43781473674783e-06!GO:0044453;nuclear membrane part;3.58193802983547e-06!GO:0006754;ATP biosynthetic process;3.95888650937814e-06!GO:0006753;nucleoside phosphate metabolic process;3.95888650937814e-06!GO:0030120;vesicle coat;4.55897510287956e-06!GO:0030662;coated vesicle membrane;4.55897510287956e-06!GO:0031324;negative regulation of cellular metabolic process;5.14591199581624e-06!GO:0009892;negative regulation of metabolic process;5.40385300461719e-06!GO:0003713;transcription coactivator activity;5.44462296932133e-06!GO:0051789;response to protein stimulus;5.59592686157031e-06!GO:0006986;response to unfolded protein;5.59592686157031e-06!GO:0031252;leading edge;5.8348067121063e-06!GO:0030018;Z disc;5.99284802959552e-06!GO:0051128;regulation of cellular component organization and biogenesis;6.77695789801214e-06!GO:0009152;purine ribonucleotide biosynthetic process;7.07073005401585e-06!GO:0005762;mitochondrial large ribosomal subunit;7.50695517194096e-06!GO:0000315;organellar large ribosomal subunit;7.50695517194096e-06!GO:0005768;endosome;7.84571065488339e-06!GO:0000074;regulation of progression through cell cycle;8.00337929263544e-06!GO:0006941;striated muscle contraction;8.40376872360001e-06!GO:0030532;small nuclear ribonucleoprotein complex;9.04126635057643e-06!GO:0051726;regulation of cell cycle;9.93863315313242e-06!GO:0043069;negative regulation of programmed cell death;1.25213640687838e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.29949132555711e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.29949132555711e-05!GO:0008361;regulation of cell size;1.5163097681015e-05!GO:0006916;anti-apoptosis;1.5412086878731e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.55726225378147e-05!GO:0043066;negative regulation of apoptosis;1.56824550943919e-05!GO:0005525;GTP binding;1.6146958527311e-05!GO:0009056;catabolic process;1.62327202312877e-05!GO:0009142;nucleoside triphosphate biosynthetic process;1.63107148603108e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.63107148603108e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.7295434338917e-05!GO:0065002;intracellular protein transport across a membrane;1.75195473644339e-05!GO:0005523;tropomyosin binding;1.75807472342796e-05!GO:0003714;transcription corepressor activity;1.8496324797936e-05!GO:0016049;cell growth;1.9128993703972e-05!GO:0005789;endoplasmic reticulum membrane;2.05514273513658e-05!GO:0050789;regulation of biological process;2.36629497577139e-05!GO:0006606;protein import into nucleus;2.40609261503359e-05!GO:0000314;organellar small ribosomal subunit;2.46967597422243e-05!GO:0005763;mitochondrial small ribosomal subunit;2.46967597422243e-05!GO:0006888;ER to Golgi vesicle-mediated transport;2.65747391298292e-05!GO:0030216;keratinocyte differentiation;2.6888752650716e-05!GO:0016070;RNA metabolic process;2.70757570648967e-05!GO:0003676;nucleic acid binding;2.73907446118943e-05!GO:0009260;ribonucleotide biosynthetic process;2.75919493749483e-05!GO:0051170;nuclear import;2.94488964514355e-05!GO:0016881;acid-amino acid ligase activity;3.01423384911834e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.05322029021354e-05!GO:0043284;biopolymer biosynthetic process;3.26536213032955e-05!GO:0048475;coated membrane;3.54264071240988e-05!GO:0030117;membrane coat;3.54264071240988e-05!GO:0050794;regulation of cellular process;3.70921310886306e-05!GO:0032446;protein modification by small protein conjugation;3.96993096672044e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.03925969343236e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.22668467005941e-05!GO:0009108;coenzyme biosynthetic process;4.57419248695647e-05!GO:0016563;transcription activator activity;4.7129405966103e-05!GO:0016491;oxidoreductase activity;4.85509008813738e-05!GO:0005667;transcription factor complex;4.98271857883506e-05!GO:0005643;nuclear pore;5.32164034395637e-05!GO:0005912;adherens junction;5.58633606540899e-05!GO:0051427;hormone receptor binding;6.04699284245384e-05!GO:0001533;cornified envelope;6.30683182527488e-05!GO:0000151;ubiquitin ligase complex;6.33934515122785e-05!GO:0048471;perinuclear region of cytoplasm;6.52126701475714e-05!GO:0045892;negative regulation of transcription, DNA-dependent;6.75062342990311e-05!GO:0000245;spliceosome assembly;6.75062342990311e-05!GO:0016567;protein ubiquitination;7.42927413590713e-05!GO:0016310;phosphorylation;7.93581021515423e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;7.93699974549663e-05!GO:0006414;translational elongation;9.62721193231441e-05!GO:0006613;cotranslational protein targeting to membrane;0.000105821344209811!GO:0042254;ribosome biogenesis and assembly;0.000106353784596205!GO:0042692;muscle cell differentiation;0.000109636906085498!GO:0032561;guanyl ribonucleotide binding;0.000111400915411617!GO:0019001;guanyl nucleotide binding;0.000111400915411617!GO:0022890;inorganic cation transmembrane transporter activity;0.000112958023330712!GO:0035257;nuclear hormone receptor binding;0.00012092862177156!GO:0005798;Golgi-associated vesicle;0.00013062012026874!GO:0005865;striated muscle thin filament;0.000139662501402873!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.000139662501402873!GO:0015002;heme-copper terminal oxidase activity;0.000139662501402873!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.000139662501402873!GO:0004129;cytochrome-c oxidase activity;0.000139662501402873!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000146634546640504!GO:0016887;ATPase activity;0.000152819673835006!GO:0007264;small GTPase mediated signal transduction;0.000156671912939948!GO:0022402;cell cycle process;0.000158074349674631!GO:0009117;nucleotide metabolic process;0.000185121075670926!GO:0019899;enzyme binding;0.000188515979890642!GO:0001558;regulation of cell growth;0.000194879297085272!GO:0004298;threonine endopeptidase activity;0.000195073959889019!GO:0006323;DNA packaging;0.000208562026906087!GO:0045445;myoblast differentiation;0.000214720618802217!GO:0043566;structure-specific DNA binding;0.000258042902761309!GO:0005859;muscle myosin complex;0.000272272877670851!GO:0003697;single-stranded DNA binding;0.000274333681552344!GO:0042623;ATPase activity, coupled;0.00028194026456004!GO:0044420;extracellular matrix part;0.000326128040336321!GO:0006974;response to DNA damage stimulus;0.000328019611974659!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000331508078518471!GO:0044431;Golgi apparatus part;0.000341451182396557!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000348296854116918!GO:0004812;aminoacyl-tRNA ligase activity;0.000348296854116918!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000348296854116918!GO:0065004;protein-DNA complex assembly;0.000348762496276695!GO:0048741;skeletal muscle fiber development;0.000348762496276695!GO:0048747;muscle fiber development;0.000348762496276695!GO:0045941;positive regulation of transcription;0.000351327842646557!GO:0005770;late endosome;0.00038068519700956!GO:0005741;mitochondrial outer membrane;0.00040297626793977!GO:0030133;transport vesicle;0.00045752204488577!GO:0006752;group transfer coenzyme metabolic process;0.000465883560963923!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000497431145339662!GO:0008287;protein serine/threonine phosphatase complex;0.000523559080102471!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000567470178546151!GO:0042981;regulation of apoptosis;0.000588890463814485!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000588890463814485!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000588890463814485!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000588890463814485!GO:0043623;cellular protein complex assembly;0.000602090299683787!GO:0016044;membrane organization and biogenesis;0.000609291778265816!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000612288000257002!GO:0051287;NAD binding;0.000650637840285535!GO:0006979;response to oxidative stress;0.000699194871663841!GO:0043038;amino acid activation;0.000709547649138478!GO:0006418;tRNA aminoacylation for protein translation;0.000709547649138478!GO:0043039;tRNA aminoacylation;0.000709547649138478!GO:0005524;ATP binding;0.000724056581906713!GO:0045893;positive regulation of transcription, DNA-dependent;0.000779726640264068!GO:0031968;organelle outer membrane;0.000793227556123308!GO:0043067;regulation of programmed cell death;0.000795577999597917!GO:0016859;cis-trans isomerase activity;0.000795577999597917!GO:0016460;myosin II complex;0.000801232111039251!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000812849328845367!GO:0033673;negative regulation of kinase activity;0.00081761511205691!GO:0006469;negative regulation of protein kinase activity;0.00081761511205691!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000824732253301564!GO:0019867;outer membrane;0.000857004302951343!GO:0005773;vacuole;0.000867632318445812!GO:0003746;translation elongation factor activity;0.000882186393600838!GO:0043021;ribonucleoprotein binding;0.000882186393600838!GO:0032559;adenyl ribonucleotide binding;0.000973103218900213!GO:0030554;adenyl nucleotide binding;0.00105292710062221!GO:0016853;isomerase activity;0.0010617681446965!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00106899455044819!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00106899455044819!GO:0044440;endosomal part;0.00115425832992178!GO:0010008;endosome membrane;0.00115425832992178!GO:0006333;chromatin assembly or disassembly;0.00118890829553013!GO:0050657;nucleic acid transport;0.00123147351963668!GO:0051236;establishment of RNA localization;0.00123147351963668!GO:0050658;RNA transport;0.00123147351963668!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.0012626385363627!GO:0051920;peroxiredoxin activity;0.00128794583865136!GO:0030027;lamellipodium;0.00151291334607916!GO:0006839;mitochondrial transport;0.00163659442031708!GO:0006403;RNA localization;0.00164166112097948!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00170614352104318!GO:0046930;pore complex;0.00174190022713499!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0017567129810584!GO:0015631;tubulin binding;0.00178767436875781!GO:0051348;negative regulation of transferase activity;0.00189504425258971!GO:0005913;cell-cell adherens junction;0.0020008521116834!GO:0015992;proton transport;0.0020008521116834!GO:0046983;protein dimerization activity;0.0020008521116834!GO:0051146;striated muscle cell differentiation;0.00200713061943617!GO:0044430;cytoskeletal part;0.00205936743025349!GO:0051276;chromosome organization and biogenesis;0.00220788655223541!GO:0006818;hydrogen transport;0.00223757643125416!GO:0005769;early endosome;0.00225445151160831!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00240124607565186!GO:0043488;regulation of mRNA stability;0.0025570019395596!GO:0043487;regulation of RNA stability;0.0025570019395596!GO:0040008;regulation of growth;0.00260037514746613!GO:0044262;cellular carbohydrate metabolic process;0.00262692340737609!GO:0031032;actomyosin structure organization and biogenesis;0.00266870640290655!GO:0051087;chaperone binding;0.00270165032170716!GO:0043681;protein import into mitochondrion;0.00282989479367989!GO:0033017;sarcoplasmic reticulum membrane;0.00284639690708976!GO:0008250;oligosaccharyl transferase complex;0.00291376327046666!GO:0004576;oligosaccharyl transferase activity;0.00304655424349078!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0030756404349662!GO:0033043;regulation of organelle organization and biogenesis;0.0030756404349662!GO:0000323;lytic vacuole;0.00331763868940219!GO:0005764;lysosome;0.00331763868940219!GO:0016197;endosome transport;0.00340353832673068!GO:0035258;steroid hormone receptor binding;0.00344515268852473!GO:0009719;response to endogenous stimulus;0.00345363702190374!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00346714036776498!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00353754130666505!GO:0048522;positive regulation of cellular process;0.0035807167493731!GO:0004721;phosphoprotein phosphatase activity;0.00361752032958854!GO:0033116;ER-Golgi intermediate compartment membrane;0.00374179687483574!GO:0031589;cell-substrate adhesion;0.00377745397059555!GO:0007050;cell cycle arrest;0.00378642739637307!GO:0006334;nucleosome assembly;0.00382066704349878!GO:0006612;protein targeting to membrane;0.00382066704349878!GO:0007265;Ras protein signal transduction;0.00385842154906181!GO:0016791;phosphoric monoester hydrolase activity;0.00386806948894092!GO:0005905;coated pit;0.00410483269676109!GO:0065007;biological regulation;0.0041049371657845!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00428183098712457!GO:0030132;clathrin coat of coated pit;0.00441908796974242!GO:0003724;RNA helicase activity;0.00455159416280477!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0047040160851389!GO:0007006;mitochondrial membrane organization and biogenesis;0.00475092089980016!GO:0045454;cell redox homeostasis;0.004850076275084!GO:0005885;Arp2/3 protein complex;0.00518224547002269!GO:0004722;protein serine/threonine phosphatase activity;0.00518224547002269!GO:0005977;glycogen metabolic process;0.00518224547002269!GO:0000159;protein phosphatase type 2A complex;0.00522075428479796!GO:0006364;rRNA processing;0.00522075428479796!GO:0031072;heat shock protein binding;0.00531861590214865!GO:0000139;Golgi membrane;0.00542611819134628!GO:0046314;phosphocreatine biosynthetic process;0.00548472396112026!GO:0006603;phosphocreatine metabolic process;0.00548472396112026!GO:0031497;chromatin assembly;0.00549182364402195!GO:0019843;rRNA binding;0.00562384326720051!GO:0030867;rough endoplasmic reticulum membrane;0.00566190880357538!GO:0001726;ruffle;0.0060861920040013!GO:0007160;cell-matrix adhesion;0.00620371590160702!GO:0048500;signal recognition particle;0.00634044882107399!GO:0005048;signal sequence binding;0.00668878628057454!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00673007131352038!GO:0001944;vasculature development;0.00675540157671254!GO:0030663;COPI coated vesicle membrane;0.00687206619023592!GO:0030126;COPI vesicle coat;0.00687206619023592!GO:0006260;DNA replication;0.00691604560855177!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00694326844081499!GO:0015399;primary active transmembrane transporter activity;0.00694326844081499!GO:0005924;cell-substrate adherens junction;0.0072166772203671!GO:0016568;chromatin modification;0.00725707264637999!GO:0016311;dephosphorylation;0.00773915694900887!GO:0030055;cell-matrix junction;0.00798561800016728!GO:0005791;rough endoplasmic reticulum;0.00814967581536348!GO:0051540;metal cluster binding;0.00863328451695714!GO:0051536;iron-sulfur cluster binding;0.00863328451695714!GO:0008139;nuclear localization sequence binding;0.00864570049101825!GO:0001568;blood vessel development;0.00864570049101825!GO:0030518;steroid hormone receptor signaling pathway;0.00864570049101825!GO:0005790;smooth endoplasmic reticulum;0.00867659857013778!GO:0016072;rRNA metabolic process;0.00871088106769171!GO:0051252;regulation of RNA metabolic process;0.00900496897848246!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00905191106074889!GO:0030521;androgen receptor signaling pathway;0.00922992535194513!GO:0030658;transport vesicle membrane;0.00952621905548725!GO:0005862;muscle thin filament tropomyosin;0.00960393074570439!GO:0051028;mRNA transport;0.00960393074570439!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00985440423009537!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00985440423009537!GO:0042383;sarcolemma;0.00986071554614367!GO:0006950;response to stress;0.0100268936546101!GO:0007266;Rho protein signal transduction;0.0101797671216366!GO:0006891;intra-Golgi vesicle-mediated transport;0.0104213396348937!GO:0008180;signalosome;0.0105774646971243!GO:0055001;muscle cell development;0.0106145327598629!GO:0030239;myofibril assembly;0.0106145327598629!GO:0055002;striated muscle cell development;0.0106145327598629!GO:0005869;dynactin complex;0.0106661759359411!GO:0000785;chromatin;0.0107359035541148!GO:0042805;actinin binding;0.0107601716625752!GO:0030832;regulation of actin filament length;0.0108005709695061!GO:0051539;4 iron, 4 sulfur cluster binding;0.0109433641490774!GO:0006626;protein targeting to mitochondrion;0.0110298354998495!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0111471610952986!GO:0006399;tRNA metabolic process;0.0111471610952986!GO:0033018;sarcoplasmic reticulum lumen;0.0114485675014753!GO:0032535;regulation of cellular component size;0.011887331752569!GO:0006281;DNA repair;0.0121791269287866!GO:0006942;regulation of striated muscle contraction;0.012769179642955!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0128859775743666!GO:0045047;protein targeting to ER;0.0128859775743666!GO:0006892;post-Golgi vesicle-mediated transport;0.0129248287197321!GO:0006073;glucan metabolic process;0.0131177539783431!GO:0019395;fatty acid oxidation;0.0131807336843003!GO:0019208;phosphatase regulator activity;0.0131846838263797!GO:0008601;protein phosphatase type 2A regulator activity;0.0137242265234706!GO:0030118;clathrin coat;0.0139144519199948!GO:0008154;actin polymerization and/or depolymerization;0.0143744163058578!GO:0015630;microtubule cytoskeleton;0.0146681205984146!GO:0005200;structural constituent of cytoskeleton;0.0148400583709462!GO:0018196;peptidyl-asparagine modification;0.0149652388100627!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0149652388100627!GO:0008654;phospholipid biosynthetic process;0.0150533081666021!GO:0006470;protein amino acid dephosphorylation;0.0150584193534314!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0151110360443589!GO:0019904;protein domain specific binding;0.0153943650662106!GO:0006733;oxidoreduction coenzyme metabolic process;0.0158405643926977!GO:0006402;mRNA catabolic process;0.015862451195534!GO:0050662;coenzyme binding;0.0161703027430236!GO:0051101;regulation of DNA binding;0.0166020783552395!GO:0043034;costamere;0.016791833796882!GO:0006007;glucose catabolic process;0.0168363264194685!GO:0005637;nuclear inner membrane;0.016859768295818!GO:0001725;stress fiber;0.016859768295818!GO:0032432;actin filament bundle;0.016859768295818!GO:0003690;double-stranded DNA binding;0.0171634661875327!GO:0051098;regulation of binding;0.0180153413631671!GO:0006635;fatty acid beta-oxidation;0.0181371608029389!GO:0008312;7S RNA binding;0.0185391003319642!GO:0031970;organelle envelope lumen;0.0185391003319642!GO:0015036;disulfide oxidoreductase activity;0.0187704133455713!GO:0005938;cell cortex;0.0188621427205581!GO:0008017;microtubule binding;0.0190095090027596!GO:0009165;nucleotide biosynthetic process;0.0190582532848515!GO:0005813;centrosome;0.0190681717958779!GO:0045947;negative regulation of translational initiation;0.0196742595482602!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.020708968554668!GO:0004386;helicase activity;0.0210126458856217!GO:0006897;endocytosis;0.0218003824472072!GO:0010324;membrane invagination;0.0218003824472072!GO:0005684;U2-dependent spliceosome;0.02209849118449!GO:0016584;nucleosome positioning;0.0226348207334675!GO:0048468;cell development;0.0233047948281012!GO:0017022;myosin binding;0.0238153254807939!GO:0003702;RNA polymerase II transcription factor activity;0.0239309314756802!GO:0031901;early endosome membrane;0.0239309314756802!GO:0001527;microfibril;0.0239538289291666!GO:0003729;mRNA binding;0.0239871607772792!GO:0030137;COPI-coated vesicle;0.0241954397077416!GO:0048659;smooth muscle cell proliferation;0.024350716771253!GO:0048487;beta-tubulin binding;0.0244645763909727!GO:0005583;fibrillar collagen;0.024547477727234!GO:0030660;Golgi-associated vesicle membrane;0.0246407149021673!GO:0007243;protein kinase cascade;0.0248840435224091!GO:0035035;histone acetyltransferase binding;0.0253001506020206!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0255790276318343!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0256322161577681!GO:0017166;vinculin binding;0.0256484296426338!GO:0019888;protein phosphatase regulator activity;0.0256710463205023!GO:0005581;collagen;0.0260779689203841!GO:0030031;cell projection biogenesis;0.0261363571801085!GO:0030134;ER to Golgi transport vesicle;0.0265812184617256!GO:0031625;ubiquitin protein ligase binding;0.0267138768865195!GO:0048518;positive regulation of biological process;0.0267523252066522!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0267523252066522!GO:0008286;insulin receptor signaling pathway;0.0271015918193303!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0272000197598066!GO:0010257;NADH dehydrogenase complex assembly;0.0272000197598066!GO:0033108;mitochondrial respiratory chain complex assembly;0.0272000197598066!GO:0050811;GABA receptor binding;0.0281402630236522!GO:0016126;sterol biosynthetic process;0.0284220540981635!GO:0007398;ectoderm development;0.0284400475379938!GO:0006607;NLS-bearing substrate import into nucleus;0.0285563157388342!GO:0004448;isocitrate dehydrogenase activity;0.0293422904910831!GO:0043492;ATPase activity, coupled to movement of substances;0.0294983485693412!GO:0004860;protein kinase inhibitor activity;0.0299330892133919!GO:0016787;hydrolase activity;0.0299397759475845!GO:0009966;regulation of signal transduction;0.0302043067766109!GO:0005758;mitochondrial intermembrane space;0.0302827376143481!GO:0007028;cytoplasm organization and biogenesis;0.0307142007206198!GO:0045098;type III intermediate filament;0.0309936179834482!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0311707827008669!GO:0008147;structural constituent of bone;0.0311795674731001!GO:0005832;chaperonin-containing T-complex;0.0311795674731001!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0323004282026444!GO:0048514;blood vessel morphogenesis;0.0327167344829242!GO:0030127;COPII vesicle coat;0.0327167344829242!GO:0012507;ER to Golgi transport vesicle membrane;0.0327167344829242!GO:0008026;ATP-dependent helicase activity;0.0328550839074781!GO:0008186;RNA-dependent ATPase activity;0.0332323211500638!GO:0006595;polyamine metabolic process;0.0335078509686984!GO:0009266;response to temperature stimulus;0.0337250396928057!GO:0008320;protein transmembrane transporter activity;0.0340800703877153!GO:0030508;thiol-disulfide exchange intermediate activity;0.0343827298346721!GO:0048660;regulation of smooth muscle cell proliferation;0.0346593014787256!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0347334779174635!GO:0030522;intracellular receptor-mediated signaling pathway;0.034945662870652!GO:0006779;porphyrin biosynthetic process;0.0353091000542286!GO:0033014;tetrapyrrole biosynthetic process;0.0353091000542286!GO:0006937;regulation of muscle contraction;0.0353536017576388!GO:0004111;creatine kinase activity;0.0358398629112426!GO:0006778;porphyrin metabolic process;0.0360916580567058!GO:0033013;tetrapyrrole metabolic process;0.0360916580567058!GO:0005605;basal lamina;0.0361409980718708!GO:0005586;collagen type III;0.0361409980718708!GO:0046164;alcohol catabolic process;0.0364854581640095!GO:0016011;dystroglycan complex;0.0365552460604893!GO:0005604;basement membrane;0.0372695892687478!GO:0050681;androgen receptor binding;0.037728627961674!GO:0005925;focal adhesion;0.038822073621071!GO:0051393;alpha-actinin binding;0.0389036730971423!GO:0051168;nuclear export;0.0391735954935748!GO:0016272;prefoldin complex;0.0393279131306959!GO:0030125;clathrin vesicle coat;0.039798223822291!GO:0030665;clathrin coated vesicle membrane;0.039798223822291!GO:0031628;opioid receptor binding;0.0403266398238746!GO:0031852;mu-type opioid receptor binding;0.0403266398238746!GO:0030911;TPR domain binding;0.0405757170895992!GO:0006006;glucose metabolic process;0.0405757170895992!GO:0051235;maintenance of localization;0.0407447238637276!GO:0030659;cytoplasmic vesicle membrane;0.0416671943333949!GO:0005626;insoluble fraction;0.0418817309372832!GO:0045113;regulation of integrin biosynthetic process;0.0423245297541733!GO:0045112;integrin biosynthetic process;0.0423245297541733!GO:0009081;branched chain family amino acid metabolic process;0.0425150994160289!GO:0030140;trans-Golgi network transport vesicle;0.0428142534349764!GO:0008544;epidermis development;0.0434581011595159!GO:0005916;fascia adherens;0.043496275967581!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0435694414644704!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0439922478165764!GO:0042396;phosphagen biosynthetic process;0.0458393627853484!GO:0006599;phosphagen metabolic process;0.0458393627853484!GO:0001666;response to hypoxia;0.0464819869439969!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0467719258281867!GO:0030880;RNA polymerase complex;0.0471362580846285!GO:0048041;focal adhesion formation;0.0477529239725486!GO:0001525;angiogenesis;0.0485600947241189!GO:0048154;S100 beta binding;0.048617483359066!GO:0006743;ubiquinone metabolic process;0.0491100988895221!GO:0006744;ubiquinone biosynthetic process;0.0491100988895221!GO:0042375;quinone cofactor metabolic process;0.0491100988895221!GO:0045426;quinone cofactor biosynthetic process;0.0491100988895221!GO:0005815;microtubule organizing center;0.0493292042280498 | |||
|sample_id=10059 | |sample_id=10059 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=tongue | |sample_tissue=tongue | ||
|top_motifs=MEF2{A,B,C,D}:6.47186095528;TBP:4.19155801896;NR6A1:3.7256144065;ZNF384:3.53802479752;HOX{A4,D4}:3.46784429997;FOXL1:3.36227896513;TFAP4:3.33777733567;TAL1_TCF{3,4,12}:3.32870855602;NR1H4:3.21835617946;NR5A1,2:3.18768977158;SOX5:3.15271344177;MYOD1:2.87490965537;IKZF2:2.73581952997;ESR1:2.71440259389;KLF4:2.65009404056;GATA4:2.32602788;NFE2L1:2.27439608659;MYBL2:2.2274092384;SPZ1:2.22656777173;ZIC1..3:2.08387787022;IKZF1:2.08303882847;SRF:2.01214719722;LMO2:1.92520257639;FOXQ1:1.91965534159;TBX4,5:1.85944013488;FOXM1:1.85779094819;GCM1,2:1.83188315853;TFAP2{A,C}:1.82064880258;ESRRA:1.74362521677;NKX2-3_NKX2-5:1.6537765586;RXR{A,B,G}:1.62147500071;NKX2-1,4:1.61657720806;ZNF423:1.60096288755;TGIF1:1.57209422169;SNAI1..3:1.56273605775;NHLH1,2:1.55772798062;GLI1..3:1.55248845753;TFCP2:1.54466917966;MAZ:1.53165227528;SMAD1..7,9:1.51691157444;POU3F1..4:1.50104549977;UFEwm:1.49125126707;HAND1,2:1.46648748781;ALX4:1.37299962984;NKX2-2,8:1.36988115086;MAFB:1.36008203309;ATF2:1.34919350361;GTF2A1,2:1.34501117916;PATZ1:1.25372640655;CDC5L:1.24287576967;RXRA_VDR{dimer}:1.2082460266;CUX2:1.19722463292;HIC1:1.16426739562;RBPJ:1.15681877842;NFIX:1.12641312586;HSF1,2:1.11874864132;TLX1..3_NFIC{dimer}:1.11153025822;PAX6:1.109655828;LHX3,4:1.0856838948;TLX2:1.06488640248;XBP1:1.0626898957;ZNF148:1.04415853114;TEF:1.03832811186;RREB1:1.02920828836;NKX6-1,2:0.986916793725;MED-1{core}:0.985543536521;PAX5:0.968770267715;ZBTB6:0.936892907848;PDX1:0.933917237533;SP1:0.919139634213;CDX1,2,4:0.91844681264;POU1F1:0.917134869592;ZNF238:0.897068785091;MTF1:0.881876388114;NFATC1..3:0.855095180209;TEAD1:0.853921305113;ALX1:0.85290351981;YY1:0.844984524374;ZEB1:0.830192297669;HMX1:0.801388030093;FOXO1,3,4:0.771953790562;FOXP3:0.759522063143;TP53:0.733210275326;NR3C1:0.719572051642;NANOG{mouse}:0.707649782322;GTF2I:0.706514324095;PAX1,9:0.676301116408;ARID5B:0.667935603213;BPTF:0.655360954833;EVI1:0.649153679774;MYFfamily:0.647402198309;NKX3-2:0.634463240952;TOPORS:0.577949246766;PBX1:0.577450481875;PPARG:0.568210786199;AR:0.548295029832;POU6F1:0.547462987886;IRF7:0.54098684326;EGR1..3:0.523095784638;HOX{A6,A7,B6,B7}:0.482040149184;MZF1:0.472160195394;PRDM1:0.460203601167;HES1:0.451414750466;NKX3-1:0.444192205044;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.422351747646;TFAP2B:0.40473232339;SOX{8,9,10}:0.388535779275;FOX{F1,F2,J1}:0.384806759935;ONECUT1,2:0.336749124198;REST:0.306963771266;JUN:0.287037972541;ATF6:0.264474513346;FOXA2:0.255297684464;ZBTB16:0.162140017957;RORA:0.132634098863;LEF1_TCF7_TCF7L1,2:0.110692216319;MTE{core}:0.0890326145294;RFX2..5_RFXANK_RFXAP:0.0555950362321;EP300:0.0471731871375;XCPE1{core}:-0.0616286336691;ZNF143:-0.0649207226608;FOXN1:-0.0811938458964;GFI1:-0.0832013350558;ZFP161:-0.0838829067234;ATF4:-0.0923403371139;AIRE:-0.0925992185142;GFI1B:-0.117466668154;SOX2:-0.130045826951;SOX17:-0.132255259893;FOSL2:-0.136151405768;STAT5{A,B}:-0.141622078332;BREu{core}:-0.150182249874;POU5F1:-0.152918225986;FOXP1:-0.224208528031;HNF4A_NR2F1,2:-0.272128133022;DMAP1_NCOR{1,2}_SMARC:-0.318896868753;ETS1,2:-0.333353123189;SPI1:-0.335347678374;HOX{A5,B5}:-0.343429023642;NANOG:-0.344460483715;PAX3,7:-0.355081617056;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.432734119864;NRF1:-0.436301730595;IRF1,2:-0.443002432141;PAX4:-0.445121931896;NFY{A,B,C}:-0.445411189782;FOX{I1,J2}:-0.457807444973;CREB1:-0.470501913039;PITX1..3:-0.479418207166;HMGA1,2:-0.493136768293;FOS_FOS{B,L1}_JUN{B,D}:-0.502113209322;PAX2:-0.502423930689;HLF:-0.504987823998;SPIB:-0.506691244163;CRX:-0.52305268016;E2F1..5:-0.527054773846;GZF1:-0.529338873007;STAT1,3:-0.571804078098;T:-0.592805747778;ELF1,2,4:-0.595023986972;NFKB1_REL_RELA:-0.624584894024;CEBPA,B_DDIT3:-0.657600746854;FOX{D1,D2}:-0.661961107578;SREBF1,2:-0.670317129321;GATA6:-0.686171797903;NFIL3:-0.708855012116;BACH2:-0.720207586311;ATF5_CREB3:-0.743920934007;HNF1A:-0.765248101901;STAT2,4,6:-0.780080032243;EBF1:-0.789782051267;NFE2:-0.803138266396;HOXA9_MEIS1:-1.0336960291;RFX1:-1.04214380921;FOXD3:-1.05103012813;OCT4_SOX2{dimer}:-1.06612409391;RUNX1..3:-1.15371008136;DBP:-1.15934233475;TFDP1:-1.15941901255;ADNP_IRX_SIX_ZHX:-1.17613678894;EN1,2:-1.20799057549;HIF1A:-1.23287913867;NFE2L2:-1.23458359047;bHLH_family:-1.26579862336;POU2F1..3:-1.37850001347;VSX1,2:-1.41821340189;HBP1_HMGB_SSRP1_UBTF:-1.41909289611;ELK1,4_GABP{A,B1}:-1.5240827322;AHR_ARNT_ARNT2:-1.56809661644;PRRX1,2:-1.61811855934;MYB:-1.72248091771;PAX8:-1.73879167121 | |top_motifs=MEF2{A,B,C,D}:6.47186095528;TBP:4.19155801896;NR6A1:3.7256144065;ZNF384:3.53802479752;HOX{A4,D4}:3.46784429997;FOXL1:3.36227896513;TFAP4:3.33777733567;TAL1_TCF{3,4,12}:3.32870855602;NR1H4:3.21835617946;NR5A1,2:3.18768977158;SOX5:3.15271344177;MYOD1:2.87490965537;IKZF2:2.73581952997;ESR1:2.71440259389;KLF4:2.65009404056;GATA4:2.32602788;NFE2L1:2.27439608659;MYBL2:2.2274092384;SPZ1:2.22656777173;ZIC1..3:2.08387787022;IKZF1:2.08303882847;SRF:2.01214719722;LMO2:1.92520257639;FOXQ1:1.91965534159;TBX4,5:1.85944013488;FOXM1:1.85779094819;GCM1,2:1.83188315853;TFAP2{A,C}:1.82064880258;ESRRA:1.74362521677;NKX2-3_NKX2-5:1.6537765586;RXR{A,B,G}:1.62147500071;NKX2-1,4:1.61657720806;ZNF423:1.60096288755;TGIF1:1.57209422169;SNAI1..3:1.56273605775;NHLH1,2:1.55772798062;GLI1..3:1.55248845753;TFCP2:1.54466917966;MAZ:1.53165227528;SMAD1..7,9:1.51691157444;POU3F1..4:1.50104549977;UFEwm:1.49125126707;HAND1,2:1.46648748781;ALX4:1.37299962984;NKX2-2,8:1.36988115086;MAFB:1.36008203309;ATF2:1.34919350361;GTF2A1,2:1.34501117916;PATZ1:1.25372640655;CDC5L:1.24287576967;RXRA_VDR{dimer}:1.2082460266;CUX2:1.19722463292;HIC1:1.16426739562;RBPJ:1.15681877842;NFIX:1.12641312586;HSF1,2:1.11874864132;TLX1..3_NFIC{dimer}:1.11153025822;PAX6:1.109655828;LHX3,4:1.0856838948;TLX2:1.06488640248;XBP1:1.0626898957;ZNF148:1.04415853114;TEF:1.03832811186;RREB1:1.02920828836;NKX6-1,2:0.986916793725;MED-1{core}:0.985543536521;PAX5:0.968770267715;ZBTB6:0.936892907848;PDX1:0.933917237533;SP1:0.919139634213;CDX1,2,4:0.91844681264;POU1F1:0.917134869592;ZNF238:0.897068785091;MTF1:0.881876388114;NFATC1..3:0.855095180209;TEAD1:0.853921305113;ALX1:0.85290351981;YY1:0.844984524374;ZEB1:0.830192297669;HMX1:0.801388030093;FOXO1,3,4:0.771953790562;FOXP3:0.759522063143;TP53:0.733210275326;NR3C1:0.719572051642;NANOG{mouse}:0.707649782322;GTF2I:0.706514324095;PAX1,9:0.676301116408;ARID5B:0.667935603213;BPTF:0.655360954833;EVI1:0.649153679774;MYFfamily:0.647402198309;NKX3-2:0.634463240952;TOPORS:0.577949246766;PBX1:0.577450481875;PPARG:0.568210786199;AR:0.548295029832;POU6F1:0.547462987886;IRF7:0.54098684326;EGR1..3:0.523095784638;HOX{A6,A7,B6,B7}:0.482040149184;MZF1:0.472160195394;PRDM1:0.460203601167;HES1:0.451414750466;NKX3-1:0.444192205044;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.422351747646;TFAP2B:0.40473232339;SOX{8,9,10}:0.388535779275;FOX{F1,F2,J1}:0.384806759935;ONECUT1,2:0.336749124198;REST:0.306963771266;JUN:0.287037972541;ATF6:0.264474513346;FOXA2:0.255297684464;ZBTB16:0.162140017957;RORA:0.132634098863;LEF1_TCF7_TCF7L1,2:0.110692216319;MTE{core}:0.0890326145294;RFX2..5_RFXANK_RFXAP:0.0555950362321;EP300:0.0471731871375;XCPE1{core}:-0.0616286336691;ZNF143:-0.0649207226608;FOXN1:-0.0811938458964;GFI1:-0.0832013350558;ZFP161:-0.0838829067234;ATF4:-0.0923403371139;AIRE:-0.0925992185142;GFI1B:-0.117466668154;SOX2:-0.130045826951;SOX17:-0.132255259893;FOSL2:-0.136151405768;STAT5{A,B}:-0.141622078332;BREu{core}:-0.150182249874;POU5F1:-0.152918225986;FOXP1:-0.224208528031;HNF4A_NR2F1,2:-0.272128133022;DMAP1_NCOR{1,2}_SMARC:-0.318896868753;ETS1,2:-0.333353123189;SPI1:-0.335347678374;HOX{A5,B5}:-0.343429023642;NANOG:-0.344460483715;PAX3,7:-0.355081617056;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.432734119864;NRF1:-0.436301730595;IRF1,2:-0.443002432141;PAX4:-0.445121931896;NFY{A,B,C}:-0.445411189782;FOX{I1,J2}:-0.457807444973;CREB1:-0.470501913039;PITX1..3:-0.479418207166;HMGA1,2:-0.493136768293;FOS_FOS{B,L1}_JUN{B,D}:-0.502113209322;PAX2:-0.502423930689;HLF:-0.504987823998;SPIB:-0.506691244163;CRX:-0.52305268016;E2F1..5:-0.527054773846;GZF1:-0.529338873007;STAT1,3:-0.571804078098;T:-0.592805747778;ELF1,2,4:-0.595023986972;NFKB1_REL_RELA:-0.624584894024;CEBPA,B_DDIT3:-0.657600746854;FOX{D1,D2}:-0.661961107578;SREBF1,2:-0.670317129321;GATA6:-0.686171797903;NFIL3:-0.708855012116;BACH2:-0.720207586311;ATF5_CREB3:-0.743920934007;HNF1A:-0.765248101901;STAT2,4,6:-0.780080032243;EBF1:-0.789782051267;NFE2:-0.803138266396;HOXA9_MEIS1:-1.0336960291;RFX1:-1.04214380921;FOXD3:-1.05103012813;OCT4_SOX2{dimer}:-1.06612409391;RUNX1..3:-1.15371008136;DBP:-1.15934233475;TFDP1:-1.15941901255;ADNP_IRX_SIX_ZHX:-1.17613678894;EN1,2:-1.20799057549;HIF1A:-1.23287913867;NFE2L2:-1.23458359047;bHLH_family:-1.26579862336;POU2F1..3:-1.37850001347;VSX1,2:-1.41821340189;HBP1_HMGB_SSRP1_UBTF:-1.41909289611;ELK1,4_GABP{A,B1}:-1.5240827322;AHR_ARNT_ARNT2:-1.56809661644;PRRX1,2:-1.61811855934;MYB:-1.72248091771;PAX8:-1.73879167121 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10059-101H5;search_select_hide=table117:FF:10059-101H5 | |||
}} | }} | ||
Latest revision as of 12:18, 3 June 2020
| Name: | tongue, fetal, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11768 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11768
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11768
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.804 |
| 10 | 10 | 0.158 |
| 100 | 100 | 0.358 |
| 101 | 101 | 0.781 |
| 102 | 102 | 0.703 |
| 103 | 103 | 0.661 |
| 104 | 104 | 0.749 |
| 105 | 105 | 0.523 |
| 106 | 106 | 0.354 |
| 107 | 107 | 0.0193 |
| 108 | 108 | 0.129 |
| 109 | 109 | 0.302 |
| 11 | 11 | 0.951 |
| 110 | 110 | 0.904 |
| 111 | 111 | 0.649 |
| 112 | 112 | 0.273 |
| 113 | 113 | 7.79414e-4 |
| 114 | 114 | 0.652 |
| 115 | 115 | 0.0231 |
| 116 | 116 | 0.146 |
| 117 | 117 | 0.0896 |
| 118 | 118 | 0.0782 |
| 119 | 119 | 0.278 |
| 12 | 12 | 0.763 |
| 120 | 120 | 0.55 |
| 121 | 121 | 0.99 |
| 122 | 122 | 0.0216 |
| 123 | 123 | 0.0582 |
| 124 | 124 | 0.0276 |
| 125 | 125 | 0.624 |
| 126 | 126 | 0.684 |
| 127 | 127 | 0.824 |
| 128 | 128 | 0.371 |
| 129 | 129 | 0.718 |
| 13 | 13 | 0.913 |
| 130 | 130 | 0.544 |
| 131 | 131 | 0.51 |
| 132 | 132 | 0.0408 |
| 133 | 133 | 0.147 |
| 134 | 134 | 0.146 |
| 135 | 135 | 0.263 |
| 136 | 136 | 0.663 |
| 137 | 137 | 0.356 |
| 138 | 138 | 0.542 |
| 139 | 139 | 0.513 |
| 14 | 14 | 0.894 |
| 140 | 140 | 0.387 |
| 141 | 141 | 0.892 |
| 142 | 142 | 0.786 |
| 143 | 143 | 0.0351 |
| 144 | 144 | 0.875 |
| 145 | 145 | 0.684 |
| 146 | 146 | 0.802 |
| 147 | 147 | 0.00712 |
| 148 | 148 | 0.366 |
| 149 | 149 | 0.0304 |
| 15 | 15 | 0.236 |
| 150 | 150 | 0.833 |
| 151 | 151 | 0.562 |
| 152 | 152 | 0.128 |
| 153 | 153 | 0.327 |
| 154 | 154 | 0.77 |
| 155 | 155 | 0.383 |
| 156 | 156 | 0.561 |
| 157 | 157 | 0.495 |
| 158 | 158 | 0.364 |
| 159 | 159 | 0.616 |
| 16 | 16 | 0.213 |
| 160 | 160 | 0.439 |
| 161 | 161 | 0.488 |
| 162 | 162 | 0.238 |
| 163 | 163 | 0.159 |
| 164 | 164 | 0.235 |
| 165 | 165 | 0.0637 |
| 166 | 166 | 0.131 |
| 167 | 167 | 0.143 |
| 168 | 168 | 0.859 |
| 169 | 169 | 0.0455 |
| 17 | 17 | 0.98 |
| 18 | 18 | 0.306 |
| 19 | 19 | 0.00933 |
| 2 | 2 | 0.0861 |
| 20 | 20 | 0.0101 |
| 21 | 21 | 0.467 |
| 22 | 22 | 0.231 |
| 23 | 23 | 0.324 |
| 24 | 24 | 0.0648 |
| 25 | 25 | 0.892 |
| 26 | 26 | 0.624 |
| 27 | 27 | 0.855 |
| 28 | 28 | 0.622 |
| 29 | 29 | 0.14 |
| 3 | 3 | 0.637 |
| 30 | 30 | 0.00311 |
| 31 | 31 | 0.403 |
| 32 | 32 | 6.18702e-4 |
| 33 | 33 | 0.787 |
| 34 | 34 | 0.723 |
| 35 | 35 | 0.714 |
| 36 | 36 | 0.0581 |
| 37 | 37 | 0.95 |
| 38 | 38 | 0.861 |
| 39 | 39 | 0.269 |
| 4 | 4 | 0.774 |
| 40 | 40 | 0.406 |
| 41 | 41 | 0.352 |
| 42 | 42 | 0.3 |
| 43 | 43 | 0.479 |
| 44 | 44 | 0.00379 |
| 45 | 45 | 0.0942 |
| 46 | 46 | 0.883 |
| 47 | 47 | 0.52 |
| 48 | 48 | 0.627 |
| 49 | 49 | 0.529 |
| 5 | 5 | 0.573 |
| 50 | 50 | 0.804 |
| 51 | 51 | 0.89 |
| 52 | 52 | 0.193 |
| 53 | 53 | 0.802 |
| 54 | 54 | 0.668 |
| 55 | 55 | 0.326 |
| 56 | 56 | 0.579 |
| 57 | 57 | 0.717 |
| 58 | 58 | 0.938 |
| 59 | 59 | 0.372 |
| 6 | 6 | 0.924 |
| 60 | 60 | 0.223 |
| 61 | 61 | 0.68 |
| 62 | 62 | 0.767 |
| 63 | 63 | 0.39 |
| 64 | 64 | 0.596 |
| 65 | 65 | 0.495 |
| 66 | 66 | 0.0283 |
| 67 | 67 | 0.152 |
| 68 | 68 | 0.178 |
| 69 | 69 | 0.277 |
| 7 | 7 | 0.608 |
| 70 | 70 | 0.938 |
| 71 | 71 | 0.25 |
| 72 | 72 | 0.605 |
| 73 | 73 | 0.569 |
| 74 | 74 | 0.145 |
| 75 | 75 | 0.444 |
| 76 | 76 | 0.0648 |
| 77 | 77 | 0.0466 |
| 78 | 78 | 0.224 |
| 79 | 79 | 0.162 |
| 8 | 8 | 0.915 |
| 80 | 80 | 0.336 |
| 81 | 81 | 0.168 |
| 82 | 82 | 0.539 |
| 83 | 83 | 0.926 |
| 84 | 84 | 0.366 |
| 85 | 85 | 0.00209 |
| 86 | 86 | 0.776 |
| 87 | 87 | 0.137 |
| 88 | 88 | 0.507 |
| 89 | 89 | 0.0317 |
| 9 | 9 | 0.861 |
| 90 | 90 | 0.0966 |
| 91 | 91 | 0.217 |
| 92 | 92 | 0.511 |
| 93 | 93 | 0.883 |
| 94 | 94 | 0.127 |
| 95 | 95 | 0.0953 |
| 96 | 96 | 0.914 |
| 97 | 97 | 0.621 |
| 98 | 98 | 0.955 |
| 99 | 99 | 0.0189 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11768
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010059 human tongue - fetal sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001723 (tongue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000020 (sense organ)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0004456 (entire sense organ system)
0001033 (gustatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010059 (human tongue - fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
