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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00005818
|accession_numbers=CAGE;DRX008757;DRR009629;DRZ001054;DRZ002439;DRZ012404;DRZ013789
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0005795,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0002050,UBERON:0005423,UBERON:0001062
|ancestors_in_cell_lineage_facet=
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|ancestors_in_disease_facet=
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|comment=
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|def=
|def=
|
|expression_enrichment_score
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|fonse_cell_line_closure=
Line 35: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
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|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/uterus%252c%2520fetal%252c%2520donor1.CNhs11763.10055-101H1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/uterus%252c%2520fetal%252c%2520donor1.CNhs11763.10055-101H1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/uterus%252c%2520fetal%252c%2520donor1.CNhs11763.10055-101H1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/uterus%252c%2520fetal%252c%2520donor1.CNhs11763.10055-101H1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/uterus%252c%2520fetal%252c%2520donor1.CNhs11763.10055-101H1.hg38.nobarcode.ctss.bed.gz
|id=FF:10055-101H1
|id=FF:10055-101H1
|is_a=EFO:0002091;;FF:0000004;;FF:0000210;;FF:0010055
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|is_obsolete=
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|library_id_phase_based=2:CNhs11763
|microRNAs=
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|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10055
|name=uterus, fetal, donor1
|name=uterus, fetal, donor1
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|namespace=FANTOM5
Line 42: Line 60:
|profile_cagescan=,,,
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|rna_box=101
|rna_box=101
|rna_catalog_number=Cat:RtHFN: Uterus
|rna_catalog_number=Cat:RtHFN: Uterus
Line 57: Line 78:
|rna_weight_ug=10
|rna_weight_ug=10
|sample_age=
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_line=
Line 69: Line 91:
|sample_ethnicity=A?
|sample_ethnicity=A?
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.153756353962e-211!GO:0005737;cytoplasm;4.50442199320613e-159!GO:0043226;organelle;1.12677428600914e-146!GO:0043229;intracellular organelle;3.15663725144058e-146!GO:0043231;intracellular membrane-bound organelle;2.32853577200713e-129!GO:0043227;membrane-bound organelle;2.36980671969923e-129!GO:0005515;protein binding;7.79286023197923e-100!GO:0044422;organelle part;2.09675920009403e-96!GO:0044446;intracellular organelle part;5.20641941706631e-95!GO:0044444;cytoplasmic part;4.27198743242215e-91!GO:0032991;macromolecular complex;2.86885564215619e-70!GO:0043170;macromolecule metabolic process;1.44507490595214e-57!GO:0044238;primary metabolic process;8.5017667606758e-57!GO:0016043;cellular component organization and biogenesis;2.97156156901764e-56!GO:0044237;cellular metabolic process;4.39440662503256e-54!GO:0005634;nucleus;5.85168082887654e-54!GO:0030529;ribonucleoprotein complex;8.06290009674034e-54!GO:0044428;nuclear part;1.45148954376791e-46!GO:0003723;RNA binding;6.46199824098922e-46!GO:0043233;organelle lumen;1.13603783120317e-43!GO:0031974;membrane-enclosed lumen;1.13603783120317e-43!GO:0019538;protein metabolic process;2.20418978472024e-40!GO:0043234;protein complex;1.70742411493607e-37!GO:0043228;non-membrane-bound organelle;8.54567060947912e-36!GO:0043232;intracellular non-membrane-bound organelle;8.54567060947912e-36!GO:0005739;mitochondrion;7.29817945452136e-34!GO:0033036;macromolecule localization;2.97021868863055e-33!GO:0044260;cellular macromolecule metabolic process;3.32763855249201e-33!GO:0015031;protein transport;3.34013335216983e-33!GO:0005840;ribosome;5.91769561512822e-33!GO:0044267;cellular protein metabolic process;7.47368034787618e-33!GO:0065003;macromolecular complex assembly;9.03584697386051e-32!GO:0005829;cytosol;3.0102323659118e-31!GO:0031090;organelle membrane;6.5324061858782e-31!GO:0008104;protein localization;2.13441039536741e-30!GO:0045184;establishment of protein localization;3.45293721493496e-30!GO:0006996;organelle organization and biogenesis;3.53133529972013e-30!GO:0022607;cellular component assembly;4.10046350576851e-30!GO:0016071;mRNA metabolic process;1.47303300525035e-29!GO:0043283;biopolymer metabolic process;2.37368763885461e-29!GO:0003735;structural constituent of ribosome;7.68232844277006e-29!GO:0046907;intracellular transport;9.36031754987164e-29!GO:0008380;RNA splicing;1.77742685457608e-28!GO:0006396;RNA processing;5.49830144321522e-28!GO:0006412;translation;2.77350499686839e-27!GO:0031967;organelle envelope;1.02094088019266e-26!GO:0031975;envelope;1.33019971291433e-26!GO:0033279;ribosomal subunit;2.15902361285817e-26!GO:0031981;nuclear lumen;3.58344735743368e-26!GO:0044429;mitochondrial part;7.08461892104986e-25!GO:0006397;mRNA processing;1.11841921882023e-24!GO:0010467;gene expression;1.2181903885278e-24!GO:0006886;intracellular protein transport;8.82042864390905e-23!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.67549428546412e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.28459619360817e-21!GO:0005681;spliceosome;1.06588801089864e-19!GO:0051641;cellular localization;5.53936344817999e-19!GO:0051649;establishment of cellular localization;7.6121186948485e-19!GO:0009059;macromolecule biosynthetic process;2.02525105466674e-18!GO:0044445;cytosolic part;3.15850362987209e-18!GO:0005654;nucleoplasm;1.41417364095204e-17!GO:0019866;organelle inner membrane;1.49514634012318e-17!GO:0006119;oxidative phosphorylation;1.66198012854497e-17!GO:0006259;DNA metabolic process;2.79321384618589e-17!GO:0048770;pigment granule;4.331260758949e-17!GO:0042470;melanosome;4.331260758949e-17!GO:0005740;mitochondrial envelope;7.26075947753986e-17!GO:0009058;biosynthetic process;7.7251568659324e-17!GO:0031966;mitochondrial membrane;1.81226914326503e-16!GO:0044249;cellular biosynthetic process;3.49691895226155e-16!GO:0008134;transcription factor binding;6.36144816543908e-16!GO:0007049;cell cycle;8.53376463237582e-16!GO:0044455;mitochondrial membrane part;1.97993411570082e-15!GO:0005743;mitochondrial inner membrane;2.25632053892642e-15!GO:0000166;nucleotide binding;5.68149633103053e-15!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.68149633103053e-15!GO:0048523;negative regulation of cellular process;1.95857883410663e-14!GO:0044451;nucleoplasm part;3.98371920432511e-14!GO:0005794;Golgi apparatus;4.02008168074908e-14!GO:0006457;protein folding;6.02237762422107e-14!GO:0005746;mitochondrial respiratory chain;6.22456566348568e-14!GO:0005783;endoplasmic reticulum;8.08437715783647e-14!GO:0016192;vesicle-mediated transport;8.15196024688101e-14!GO:0015934;large ribosomal subunit;1.13520520000721e-13!GO:0012505;endomembrane system;1.2305845604248e-13!GO:0015935;small ribosomal subunit;1.2305845604248e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.14769528120429e-13!GO:0050136;NADH dehydrogenase (quinone) activity;4.14769528120429e-13!GO:0003954;NADH dehydrogenase activity;4.14769528120429e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.14769528120429e-13!GO:0003676;nucleic acid binding;4.16183291222219e-13!GO:0048193;Golgi vesicle transport;8.8446309564588e-13!GO:0048519;negative regulation of biological process;1.00478041189934e-12!GO:0022618;protein-RNA complex assembly;1.36879018373586e-12!GO:0006461;protein complex assembly;1.22725068569913e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;1.3898079552392e-11!GO:0022402;cell cycle process;1.57288767528035e-11!GO:0006511;ubiquitin-dependent protein catabolic process;1.74365007508699e-11!GO:0016462;pyrophosphatase activity;2.10699352732577e-11!GO:0019941;modification-dependent protein catabolic process;2.64319600220621e-11!GO:0043632;modification-dependent macromolecule catabolic process;2.64319600220621e-11!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.93607161371557e-11!GO:0051276;chromosome organization and biogenesis;3.44490367768137e-11!GO:0050794;regulation of cellular process;3.84771765793958e-11!GO:0044257;cellular protein catabolic process;4.08686158226532e-11!GO:0016817;hydrolase activity, acting on acid anhydrides;4.2172141155434e-11!GO:0030964;NADH dehydrogenase complex (quinone);4.60407334761003e-11!GO:0045271;respiratory chain complex I;4.60407334761003e-11!GO:0005747;mitochondrial respiratory chain complex I;4.60407334761003e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.77547111433219e-11!GO:0042775;organelle ATP synthesis coupled electron transport;6.14705918826146e-11!GO:0042773;ATP synthesis coupled electron transport;6.14705918826146e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;6.14705918826146e-11!GO:0005635;nuclear envelope;6.16139717195754e-11!GO:0016070;RNA metabolic process;6.16139717195754e-11!GO:0017111;nucleoside-triphosphatase activity;9.5562000723981e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.26780712276833e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.39398659316306e-10!GO:0032553;ribonucleotide binding;1.52116523254373e-10!GO:0032555;purine ribonucleotide binding;1.52116523254373e-10!GO:0031980;mitochondrial lumen;1.52116523254373e-10!GO:0005759;mitochondrial matrix;1.52116523254373e-10!GO:0006512;ubiquitin cycle;1.7313701169084e-10!GO:0000502;proteasome complex (sensu Eukaryota);2.26945996508633e-10!GO:0044265;cellular macromolecule catabolic process;2.28855114173806e-10!GO:0006323;DNA packaging;3.09586406390066e-10!GO:0043412;biopolymer modification;3.20570220182289e-10!GO:0006605;protein targeting;3.79309264165416e-10!GO:0007010;cytoskeleton organization and biogenesis;3.81240333110403e-10!GO:0031965;nuclear membrane;4.58829231282895e-10!GO:0016874;ligase activity;4.73464245523561e-10!GO:0008135;translation factor activity, nucleic acid binding;7.60052851279714e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;9.80229551340519e-10!GO:0000375;RNA splicing, via transesterification reactions;9.80229551340519e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.80229551340519e-10!GO:0043687;post-translational protein modification;1.08154180388614e-09!GO:0043285;biopolymer catabolic process;1.10992503853936e-09!GO:0006464;protein modification process;1.18260654536587e-09!GO:0051082;unfolded protein binding;1.30361518312145e-09!GO:0050789;regulation of biological process;1.41281230847375e-09!GO:0030163;protein catabolic process;1.60868984128223e-09!GO:0008565;protein transporter activity;1.61911756687372e-09!GO:0017076;purine nucleotide binding;1.62443707302768e-09!GO:0006913;nucleocytoplasmic transport;1.9443419761455e-09!GO:0030036;actin cytoskeleton organization and biogenesis;2.04631692433918e-09!GO:0003712;transcription cofactor activity;2.05639359176471e-09!GO:0031988;membrane-bound vesicle;2.18830143435343e-09!GO:0006333;chromatin assembly or disassembly;3.26276352434708e-09!GO:0044432;endoplasmic reticulum part;3.70447063601468e-09!GO:0016023;cytoplasmic membrane-bound vesicle;4.09375543200886e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.59932162977154e-09!GO:0051169;nuclear transport;5.42847251797098e-09!GO:0005761;mitochondrial ribosome;8.92900864609003e-09!GO:0000313;organellar ribosome;8.92900864609003e-09!GO:0016604;nuclear body;9.58277599248174e-09!GO:0005793;ER-Golgi intermediate compartment;1.00639810300815e-08!GO:0031982;vesicle;1.44035025995707e-08!GO:0016564;transcription repressor activity;1.5856555161884e-08!GO:0005694;chromosome;1.82153504866843e-08!GO:0051726;regulation of cell cycle;1.88887251290091e-08!GO:0000074;regulation of progression through cell cycle;1.92960057417168e-08!GO:0006366;transcription from RNA polymerase II promoter;2.55614365610353e-08!GO:0009057;macromolecule catabolic process;2.75317639744794e-08!GO:0031410;cytoplasmic vesicle;3.25267147562488e-08!GO:0065004;protein-DNA complex assembly;3.32586024015632e-08!GO:0006446;regulation of translational initiation;4.4336642962813e-08!GO:0016607;nuclear speck;4.89938687386785e-08!GO:0030029;actin filament-based process;5.73431810757265e-08!GO:0006334;nucleosome assembly;5.78727578424895e-08!GO:0008092;cytoskeletal protein binding;6.26237088189294e-08!GO:0031252;leading edge;6.9735408936857e-08!GO:0005730;nucleolus;7.01187694985994e-08!GO:0003743;translation initiation factor activity;8.90089358530261e-08!GO:0044427;chromosomal part;9.30760092177038e-08!GO:0006413;translational initiation;1.00936588942259e-07!GO:0000785;chromatin;1.13512341228988e-07!GO:0044453;nuclear membrane part;1.27834317550132e-07!GO:0006974;response to DNA damage stimulus;2.21157133160906e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.88443792222146e-07!GO:0031324;negative regulation of cellular metabolic process;2.91428525766256e-07!GO:0008639;small protein conjugating enzyme activity;3.06198980177436e-07!GO:0005524;ATP binding;3.3342926476489e-07!GO:0000278;mitotic cell cycle;3.49304101484437e-07!GO:0012501;programmed cell death;3.49304101484437e-07!GO:0004842;ubiquitin-protein ligase activity;3.8417692564495e-07!GO:0006793;phosphorus metabolic process;4.19981589685166e-07!GO:0006796;phosphate metabolic process;4.19981589685166e-07!GO:0032559;adenyl ribonucleotide binding;4.29530189195038e-07!GO:0044248;cellular catabolic process;4.31606357192265e-07!GO:0005856;cytoskeleton;5.15617524923776e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.46760219763474e-07!GO:0045786;negative regulation of progression through cell cycle;5.65131510821337e-07!GO:0016481;negative regulation of transcription;5.73384360705871e-07!GO:0031497;chromatin assembly;5.83140595647769e-07!GO:0006915;apoptosis;5.96186592456686e-07!GO:0015630;microtubule cytoskeleton;6.69492378360139e-07!GO:0051186;cofactor metabolic process;6.82474301781497e-07!GO:0008219;cell death;7.96412119102851e-07!GO:0016265;death;7.96412119102851e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.3489351114895e-07!GO:0017038;protein import;9.94825352798356e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.0676161889925e-06!GO:0009892;negative regulation of metabolic process;1.07421992809206e-06!GO:0009060;aerobic respiration;1.21431527158696e-06!GO:0007264;small GTPase mediated signal transduction;1.26669037173352e-06!GO:0048475;coated membrane;1.57017380110887e-06!GO:0030117;membrane coat;1.57017380110887e-06!GO:0030120;vesicle coat;1.6015132065331e-06!GO:0030662;coated vesicle membrane;1.6015132065331e-06!GO:0019787;small conjugating protein ligase activity;1.6668492143973e-06!GO:0009055;electron carrier activity;1.99992181006374e-06!GO:0003924;GTPase activity;2.06563947846291e-06!GO:0008361;regulation of cell size;2.26620725358491e-06!GO:0016049;cell growth;2.47781211914934e-06!GO:0045333;cellular respiration;2.48589925736913e-06!GO:0016310;phosphorylation;2.70574076460039e-06!GO:0005788;endoplasmic reticulum lumen;3.58371207395935e-06!GO:0030554;adenyl nucleotide binding;3.84659573776848e-06!GO:0065007;biological regulation;3.98937618709149e-06!GO:0051246;regulation of protein metabolic process;4.12217315789889e-06!GO:0019829;cation-transporting ATPase activity;5.22976225865868e-06!GO:0015986;ATP synthesis coupled proton transport;5.25205204832225e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.25205204832225e-06!GO:0005525;GTP binding;5.31161948102994e-06!GO:0003697;single-stranded DNA binding;5.90081346530141e-06!GO:0043566;structure-specific DNA binding;6.79141193765153e-06!GO:0030532;small nuclear ribonucleoprotein complex;7.68050082526701e-06!GO:0005643;nuclear pore;8.59181393105828e-06!GO:0006260;DNA replication;1.00276507787488e-05!GO:0009719;response to endogenous stimulus;1.03540520754743e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.29966024672475e-05!GO:0006281;DNA repair;1.71326679121681e-05!GO:0005789;endoplasmic reticulum membrane;1.76329863275472e-05!GO:0006606;protein import into nucleus;1.95995003684093e-05!GO:0051301;cell division;1.9656861847466e-05!GO:0045259;proton-transporting ATP synthase complex;2.13800512657502e-05!GO:0016044;membrane organization and biogenesis;2.15709627020287e-05!GO:0003714;transcription corepressor activity;2.372389677217e-05!GO:0006099;tricarboxylic acid cycle;2.45161759794726e-05!GO:0046356;acetyl-CoA catabolic process;2.45161759794726e-05!GO:0051170;nuclear import;2.52580597651298e-05!GO:0006732;coenzyme metabolic process;2.64805219844271e-05!GO:0006403;RNA localization;2.86829841283075e-05!GO:0032561;guanyl ribonucleotide binding;3.23630370165089e-05!GO:0019001;guanyl nucleotide binding;3.23630370165089e-05!GO:0022403;cell cycle phase;3.2479506341804e-05!GO:0050657;nucleic acid transport;3.2479506341804e-05!GO:0051236;establishment of RNA localization;3.2479506341804e-05!GO:0050658;RNA transport;3.2479506341804e-05!GO:0005768;endosome;3.2479506341804e-05!GO:0030027;lamellipodium;3.2479506341804e-05!GO:0000245;spliceosome assembly;3.33091819789109e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.33091819789109e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.33091819789109e-05!GO:0009142;nucleoside triphosphate biosynthetic process;3.44967373896059e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.44967373896059e-05!GO:0019899;enzyme binding;3.57657571763885e-05!GO:0016881;acid-amino acid ligase activity;3.93035715392195e-05!GO:0009150;purine ribonucleotide metabolic process;4.00095852448346e-05!GO:0016568;chromatin modification;4.09995715019888e-05!GO:0044431;Golgi apparatus part;4.11221232291414e-05!GO:0016469;proton-transporting two-sector ATPase complex;4.29957396228517e-05!GO:0009141;nucleoside triphosphate metabolic process;4.33857000031787e-05!GO:0048471;perinuclear region of cytoplasm;4.40204824414745e-05!GO:0009259;ribonucleotide metabolic process;4.54660130382403e-05!GO:0016887;ATPase activity;4.61584230651837e-05!GO:0045892;negative regulation of transcription, DNA-dependent;4.69882306213659e-05!GO:0042623;ATPase activity, coupled;4.85542340363722e-05!GO:0006613;cotranslational protein targeting to membrane;5.01503394335038e-05!GO:0004386;helicase activity;5.03120874445965e-05!GO:0006163;purine nucleotide metabolic process;5.12925732681168e-05!GO:0009152;purine ribonucleotide biosynthetic process;5.2386673410716e-05!GO:0005798;Golgi-associated vesicle;5.30890314278824e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.30890314278824e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.30890314278824e-05!GO:0009144;purine nucleoside triphosphate metabolic process;5.30890314278824e-05!GO:0009199;ribonucleoside triphosphate metabolic process;5.3649546680056e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.72472546802797e-05!GO:0006916;anti-apoptosis;5.83531884577563e-05!GO:0000902;cell morphogenesis;6.43332191160069e-05!GO:0032989;cellular structure morphogenesis;6.43332191160069e-05!GO:0043069;negative regulation of programmed cell death;6.9332033585852e-05!GO:0001558;regulation of cell growth;7.08975219682699e-05!GO:0006164;purine nucleotide biosynthetic process;7.1390747281863e-05!GO:0003713;transcription coactivator activity;7.88162357079594e-05!GO:0000151;ubiquitin ligase complex;8.48130785872243e-05!GO:0032446;protein modification by small protein conjugation;8.73315421803302e-05!GO:0006754;ATP biosynthetic process;8.9579835488575e-05!GO:0006753;nucleoside phosphate metabolic process;8.9579835488575e-05!GO:0005791;rough endoplasmic reticulum;0.000102887459705312!GO:0043066;negative regulation of apoptosis;0.000106480074325339!GO:0016563;transcription activator activity;0.000110190988983414!GO:0009260;ribonucleotide biosynthetic process;0.000118582916039621!GO:0030867;rough endoplasmic reticulum membrane;0.000135157723175598!GO:0009109;coenzyme catabolic process;0.000140949882469209!GO:0043623;cellular protein complex assembly;0.00014312954879225!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000146971827710214!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000147425861921826!GO:0015078;hydrogen ion transmembrane transporter activity;0.000147930615720519!GO:0000087;M phase of mitotic cell cycle;0.000148454693299611!GO:0007067;mitosis;0.000170858459676531!GO:0005813;centrosome;0.000170858459676531!GO:0046034;ATP metabolic process;0.000181077818374423!GO:0016567;protein ubiquitination;0.000194440883250101!GO:0006084;acetyl-CoA metabolic process;0.000198154147660257!GO:0005839;proteasome core complex (sensu Eukaryota);0.00021110878914619!GO:0003779;actin binding;0.00021770077624288!GO:0051427;hormone receptor binding;0.000225380657679851!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000228404106116509!GO:0051128;regulation of cellular component organization and biogenesis;0.000235945042941524!GO:0046930;pore complex;0.000240550269582255!GO:0051187;cofactor catabolic process;0.000244924495954737!GO:0016859;cis-trans isomerase activity;0.000244924495954737!GO:0044420;extracellular matrix part;0.00027159498257171!GO:0005815;microtubule organizing center;0.000275761929625445!GO:0042802;identical protein binding;0.000288597099537251!GO:0000786;nucleosome;0.000297883645527974!GO:0008026;ATP-dependent helicase activity;0.000319057958486654!GO:0005581;collagen;0.000320675010016065!GO:0030133;transport vesicle;0.000320675010016065!GO:0051789;response to protein stimulus;0.000331028670451354!GO:0006986;response to unfolded protein;0.000331028670451354!GO:0051028;mRNA transport;0.000333427636993299!GO:0005770;late endosome;0.000346092768319573!GO:0065002;intracellular protein transport across a membrane;0.000347517652159296!GO:0005667;transcription factor complex;0.00040189489247049!GO:0035257;nuclear hormone receptor binding;0.000412957122597659!GO:0005905;coated pit;0.000443731606396149!GO:0009117;nucleotide metabolic process;0.00048976294577272!GO:0005912;adherens junction;0.000541189156269175!GO:0008250;oligosaccharyl transferase complex;0.000542092065628766!GO:0042254;ribosome biogenesis and assembly;0.000543610020760445!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000674330480677992!GO:0004812;aminoacyl-tRNA ligase activity;0.000674330480677992!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000674330480677992!GO:0003729;mRNA binding;0.000677309808891123!GO:0004576;oligosaccharyl transferase activity;0.000699338023836466!GO:0005083;small GTPase regulator activity;0.000702251264517837!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000716358527275576!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000741028710471509!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000810338448684999!GO:0004298;threonine endopeptidase activity;0.000859133003954445!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000939471579330736!GO:0005769;early endosome;0.00100665455080815!GO:0000139;Golgi membrane;0.0011215217192285!GO:0007265;Ras protein signal transduction;0.00112871644444363!GO:0016853;isomerase activity;0.00114684869959229!GO:0003690;double-stranded DNA binding;0.00115484760252138!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00121404665160171!GO:0019222;regulation of metabolic process;0.00124145455579216!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00127957415242803!GO:0030663;COPI coated vesicle membrane;0.00129926243830527!GO:0030126;COPI vesicle coat;0.00129926243830527!GO:0043038;amino acid activation;0.00130118471119031!GO:0006418;tRNA aminoacylation for protein translation;0.00130118471119031!GO:0043039;tRNA aminoacylation;0.00130118471119031!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0013642602474551!GO:0003724;RNA helicase activity;0.00143127155237897!GO:0051920;peroxiredoxin activity;0.00147261350944151!GO:0005885;Arp2/3 protein complex;0.00153662538397273!GO:0051188;cofactor biosynthetic process;0.00154247558534336!GO:0008154;actin polymerization and/or depolymerization;0.00161957111531179!GO:0005938;cell cortex;0.00166880792432819!GO:0005762;mitochondrial large ribosomal subunit;0.00175665768224775!GO:0000315;organellar large ribosomal subunit;0.00175665768224775!GO:0005637;nuclear inner membrane;0.00180569144003875!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00183988124170734!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00183988124170734!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00183988124170734!GO:0033116;ER-Golgi intermediate compartment membrane;0.00186847149763009!GO:0044440;endosomal part;0.00201039284868157!GO:0010008;endosome membrane;0.00201039284868157!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00205479791296526!GO:0000279;M phase;0.00205629839648318!GO:0030695;GTPase regulator activity;0.0020946125455225!GO:0051252;regulation of RNA metabolic process;0.00211635993302178!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00211635993302178!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.0021841831315269!GO:0006897;endocytosis;0.00219405090019515!GO:0010324;membrane invagination;0.00219405090019515!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00232692081555539!GO:0001726;ruffle;0.00236926453184016!GO:0009056;catabolic process;0.00246067749697034!GO:0006402;mRNA catabolic process;0.00258237366089933!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00272850169900946!GO:0035258;steroid hormone receptor binding;0.00278750108943774!GO:0051087;chaperone binding;0.00283043140032557!GO:0030137;COPI-coated vesicle;0.00285694111864558!GO:0040008;regulation of growth;0.00285726947418975!GO:0030518;steroid hormone receptor signaling pathway;0.00321402704091225!GO:0043021;ribonucleoprotein binding;0.0033784414172195!GO:0005773;vacuole;0.00338362880925276!GO:0006612;protein targeting to membrane;0.00341030194390787!GO:0003682;chromatin binding;0.0035100794197971!GO:0008654;phospholipid biosynthetic process;0.00351687199248327!GO:0006752;group transfer coenzyme metabolic process;0.00357796662045306!GO:0043488;regulation of mRNA stability;0.00357796662045306!GO:0043487;regulation of RNA stability;0.00357796662045306!GO:0030134;ER to Golgi transport vesicle;0.00364446826116961!GO:0015980;energy derivation by oxidation of organic compounds;0.0037675378241487!GO:0016197;endosome transport;0.0038430583624245!GO:0005586;collagen type III;0.00387021069399745!GO:0051674;localization of cell;0.00391330771674462!GO:0006928;cell motility;0.00391330771674462!GO:0048522;positive regulation of cellular process;0.00394140514302485!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00402945204423479!GO:0007050;cell cycle arrest;0.00403542456845729!GO:0045045;secretory pathway;0.00427755539339599!GO:0005096;GTPase activator activity;0.0043143502869285!GO:0016363;nuclear matrix;0.00439094721809891!GO:0007005;mitochondrion organization and biogenesis;0.00446309843031997!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00451652531485581!GO:0048468;cell development;0.00484974037622738!GO:0051168;nuclear export;0.00484974037622738!GO:0005741;mitochondrial outer membrane;0.00491103583855748!GO:0005819;spindle;0.00494348698319874!GO:0005874;microtubule;0.00500722076811915!GO:0030041;actin filament polymerization;0.00501053917596171!GO:0009966;regulation of signal transduction;0.00509052388373361!GO:0005048;signal sequence binding;0.00512218157745532!GO:0006891;intra-Golgi vesicle-mediated transport;0.00516295033746709!GO:0007167;enzyme linked receptor protein signaling pathway;0.00524696737410919!GO:0008283;cell proliferation;0.00533473079644973!GO:0051325;interphase;0.00535919916680589!GO:0042981;regulation of apoptosis;0.00545349789970901!GO:0005913;cell-cell adherens junction;0.00609075905552706!GO:0008139;nuclear localization sequence binding;0.00612092114696272!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00621005676530981!GO:0051329;interphase of mitotic cell cycle;0.00621005676530981!GO:0045792;negative regulation of cell size;0.00625664700359589!GO:0030521;androgen receptor signaling pathway;0.00631581632774022!GO:0030308;negative regulation of cell growth;0.00640555832782933!GO:0030031;cell projection biogenesis;0.00640555832782933!GO:0043067;regulation of programmed cell death;0.00647700404578522!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00654160464459448!GO:0051270;regulation of cell motility;0.00665639418348602!GO:0018196;peptidyl-asparagine modification;0.00684859851568331!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00684859851568331!GO:0008047;enzyme activator activity;0.00684859851568331!GO:0017166;vinculin binding;0.00689220685439151!GO:0031968;organelle outer membrane;0.00715360453448875!GO:0001666;response to hypoxia;0.00723246213932894!GO:0016584;nucleosome positioning;0.00752353474119683!GO:0048500;signal recognition particle;0.00762955836112955!GO:0030127;COPII vesicle coat;0.00782776060699205!GO:0012507;ER to Golgi transport vesicle membrane;0.00782776060699205!GO:0000323;lytic vacuole;0.00800067833881614!GO:0005764;lysosome;0.00800067833881614!GO:0030118;clathrin coat;0.00849559863571121!GO:0006414;translational elongation;0.00873540828069239!GO:0019867;outer membrane;0.00873540828069239!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00873540828069239!GO:0033673;negative regulation of kinase activity;0.00913106677939614!GO:0006469;negative regulation of protein kinase activity;0.00913106677939614!GO:0051287;NAD binding;0.00913106677939614!GO:0000314;organellar small ribosomal subunit;0.00917704741658682!GO:0005763;mitochondrial small ribosomal subunit;0.00917704741658682!GO:0031072;heat shock protein binding;0.00956528475339554!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0105823998376396!GO:0007243;protein kinase cascade;0.0108004707095389!GO:0030132;clathrin coat of coated pit;0.0108874606119139!GO:0019843;rRNA binding;0.0110109926049066!GO:0006607;NLS-bearing substrate import into nucleus;0.011125121836181!GO:0015629;actin cytoskeleton;0.0113716057119085!GO:0001725;stress fiber;0.0114297839493634!GO:0032432;actin filament bundle;0.0114297839493634!GO:0008287;protein serine/threonine phosphatase complex;0.011441907894972!GO:0006364;rRNA processing;0.0116168924396193!GO:0006892;post-Golgi vesicle-mediated transport;0.0123060093215592!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0123798473835309!GO:0008186;RNA-dependent ATPase activity;0.0124603878016327!GO:0005100;Rho GTPase activator activity;0.0125382336214894!GO:0000118;histone deacetylase complex;0.0125410562751123!GO:0030658;transport vesicle membrane;0.0125410562751123!GO:0015631;tubulin binding;0.0128797982846016!GO:0043681;protein import into mitochondrion;0.0129020278567836!GO:0031543;peptidyl-proline dioxygenase activity;0.0129833243194515!GO:0019904;protein domain specific binding;0.013034150546987!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0133846595252868!GO:0007266;Rho protein signal transduction;0.0134000098058658!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0135605887295194!GO:0033043;regulation of organelle organization and biogenesis;0.0135605887295194!GO:0009108;coenzyme biosynthetic process;0.0137295156388665!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0138334498016218!GO:0003702;RNA polymerase II transcription factor activity;0.0141966455736223!GO:0001527;microfibril;0.0147182135296794!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.014755043945081!GO:0000059;protein import into nucleus, docking;0.0150608829877362!GO:0031589;cell-substrate adhesion;0.015435254274579!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0157432644457643!GO:0007051;spindle organization and biogenesis;0.0163579726154868!GO:0030522;intracellular receptor-mediated signaling pathway;0.0163985369751611!GO:0045893;positive regulation of transcription, DNA-dependent;0.0165979335075815!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0167028774559963!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0174084694829574!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0174084694829574!GO:0051348;negative regulation of transferase activity;0.01749724833509!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0183403155255571!GO:0045047;protein targeting to ER;0.0183403155255571!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0186124799134096!GO:0016740;transferase activity;0.0187615693778189!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0192701360580364!GO:0005159;insulin-like growth factor receptor binding;0.0193858053404545!GO:0007017;microtubule-based process;0.0194270569094504!GO:0008601;protein phosphatase type 2A regulator activity;0.0194369910353386!GO:0007160;cell-matrix adhesion;0.0194869521877915!GO:0040011;locomotion;0.020154580007534!GO:0008286;insulin receptor signaling pathway;0.0205962730854794!GO:0031901;early endosome membrane;0.0206692063924533!GO:0030659;cytoplasmic vesicle membrane;0.0209083239380967!GO:0040012;regulation of locomotion;0.02151263682779!GO:0008064;regulation of actin polymerization and/or depolymerization;0.02151263682779!GO:0051101;regulation of DNA binding;0.022261876295145!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0223231004789706!GO:0000159;protein phosphatase type 2A complex;0.0223894588071151!GO:0012506;vesicle membrane;0.0225009259159013!GO:0005099;Ras GTPase activator activity;0.0226119199809439!GO:0001944;vasculature development;0.0226167154572713!GO:0005521;lamin binding;0.0226564087330702!GO:0005583;fibrillar collagen;0.0227787818776233!GO:0016072;rRNA metabolic process;0.0233667108104723!GO:0030032;lamellipodium biogenesis;0.0239030217086306!GO:0048518;positive regulation of biological process;0.0243163210947179!GO:0009116;nucleoside metabolic process;0.0246291979683629!GO:0008312;7S RNA binding;0.0246291979683629!GO:0006401;RNA catabolic process;0.0254683542981509!GO:0031625;ubiquitin protein ligase binding;0.0256532393170865!GO:0005869;dynactin complex;0.0262431126784642!GO:0043034;costamere;0.0266542445899934!GO:0043284;biopolymer biosynthetic process;0.0267384015374784!GO:0019798;procollagen-proline dioxygenase activity;0.0272634393172082!GO:0001568;blood vessel development;0.0273146667884483!GO:0008022;protein C-terminus binding;0.0276221881300149!GO:0006399;tRNA metabolic process;0.0280225651855813!GO:0008147;structural constituent of bone;0.0285272167485337!GO:0009081;branched chain family amino acid metabolic process;0.0285536374052155!GO:0007004;telomere maintenance via telomerase;0.0288638786819184!GO:0030660;Golgi-associated vesicle membrane;0.0294051906194006!GO:0004004;ATP-dependent RNA helicase activity;0.0294073890513736!GO:0006261;DNA-dependent DNA replication;0.0295899754866856!GO:0044433;cytoplasmic vesicle part;0.0296316627036821!GO:0005684;U2-dependent spliceosome;0.0307785284736459!GO:0045113;regulation of integrin biosynthetic process;0.0309750311060968!GO:0045112;integrin biosynthetic process;0.0309750311060968!GO:0006950;response to stress;0.0327146246037921!GO:0030833;regulation of actin filament polymerization;0.0328442797806908!GO:0045941;positive regulation of transcription;0.0332094132152072!GO:0065009;regulation of a molecular function;0.0334489559104131!GO:0031418;L-ascorbic acid binding;0.0335763648407572!GO:0000792;heterochromatin;0.0346118166222037!GO:0007052;mitotic spindle organization and biogenesis;0.0346118166222037!GO:0031124;mRNA 3'-end processing;0.0346472453874504!GO:0045926;negative regulation of growth;0.0346472453874504!GO:0031272;regulation of pseudopodium formation;0.0346472453874504!GO:0031269;pseudopodium formation;0.0346472453874504!GO:0031344;regulation of cell projection organization and biogenesis;0.0346472453874504!GO:0031268;pseudopodium organization and biogenesis;0.0346472453874504!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0346472453874504!GO:0031274;positive regulation of pseudopodium formation;0.0346472453874504!GO:0003746;translation elongation factor activity;0.0349943290044003!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0349943290044003!GO:0030162;regulation of proteolysis;0.0350393460852286!GO:0048487;beta-tubulin binding;0.0358320947550024!GO:0030119;AP-type membrane coat adaptor complex;0.0362868560472949!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.037400236166066!GO:0008180;signalosome;0.0375878660453774!GO:0009165;nucleotide biosynthetic process;0.0386275861862016!GO:0004674;protein serine/threonine kinase activity;0.0389112667160834!GO:0044448;cell cortex part;0.0394192839878875!GO:0005832;chaperonin-containing T-complex;0.0395688500531117!GO:0007028;cytoplasm organization and biogenesis;0.0399986830756022!GO:0050681;androgen receptor binding;0.0410919304074161!GO:0000776;kinetochore;0.0415748862455918!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0417976890580621!GO:0015002;heme-copper terminal oxidase activity;0.0417976890580621!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0417976890580621!GO:0004129;cytochrome-c oxidase activity;0.0417976890580621!GO:0016126;sterol biosynthetic process;0.0418036575946896!GO:0047485;protein N-terminus binding;0.0420256110983017!GO:0031323;regulation of cellular metabolic process;0.042658823533524!GO:0005862;muscle thin filament tropomyosin;0.042661303570668!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.042661303570668!GO:0009967;positive regulation of signal transduction;0.042661303570668!GO:0031529;ruffle organization and biogenesis;0.0429373927955802!GO:0006338;chromatin remodeling;0.0434202497093188!GO:0016301;kinase activity;0.0439151461224634!GO:0004860;protein kinase inhibitor activity;0.0439151461224634!GO:0030832;regulation of actin filament length;0.044134404751518!GO:0005606;laminin-1 complex;0.0448072118305327!GO:0008097;5S rRNA binding;0.0449244420723883!GO:0045454;cell redox homeostasis;0.0449244420723883!GO:0007006;mitochondrial membrane organization and biogenesis;0.0449244420723883!GO:0030235;nitric-oxide synthase regulator activity;0.0453583760674963!GO:0006376;mRNA splice site selection;0.0465117710404682!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0465117710404682!GO:0032535;regulation of cellular component size;0.0466108543765476!GO:0016491;oxidoreductase activity;0.0473463405163081!GO:0030911;TPR domain binding;0.0479337884993207!GO:0005784;translocon complex;0.0479337884993207!GO:0007569;cell aging;0.0481920131424739!GO:0009112;nucleobase metabolic process;0.048334438314541!GO:0006509;membrane protein ectodomain proteolysis;0.0488500670128678!GO:0033619;membrane protein proteolysis;0.0488500670128678
|sample_id=10055
|sample_id=10055
|sample_note=
|sample_note=
Line 76: Line 99:
|sample_tissue=uterus
|sample_tissue=uterus
|top_motifs=MYBL2:2.63557593049;ZNF384:2.50080012854;TBP:2.45654330448;HBP1_HMGB_SSRP1_UBTF:2.44650011245;NKX2-3_NKX2-5:2.43206408597;TAL1_TCF{3,4,12}:2.42994042487;RBPJ:2.33071266631;PRDM1:2.27604996551;MAZ:2.18664862448;MZF1:2.15591842383;RXRA_VDR{dimer}:2.14349146575;CDC5L:2.08214380395;NKX2-1,4:2.05325789498;GATA4:1.92737682864;TFAP2{A,C}:1.85401055741;PATZ1:1.84918560649;FOXM1:1.70604733162;CDX1,2,4:1.70481400275;XCPE1{core}:1.70283046529;ZNF238:1.67245686051;MED-1{core}:1.66351439402;TEF:1.64942697125;GTF2I:1.64211147148;SRF:1.64157949207;IKZF2:1.62048862204;TFAP4:1.61617598495;IKZF1:1.54305135569;EP300:1.48753932679;FOXP1:1.48242896334;ZIC1..3:1.47572378276;SP1:1.47422062744;POU5F1:1.46420173337;KLF4:1.44776140643;T:1.43360296938;HMGA1,2:1.41688781656;MYFfamily:1.41328664898;HIC1:1.4114212416;SMAD1..7,9:1.38070118599;EGR1..3:1.35837041576;GZF1:1.35403472722;ALX1:1.33430008911;AIRE:1.31830688418;PAX5:1.26804061822;POU3F1..4:1.26512764779;SOX5:1.25197826829;GFI1:1.24582381337;FOXD3:1.19402575047;GCM1,2:1.19160373645;TFAP2B:1.17561426945;SPZ1:1.15638826506;XBP1:1.09333583857;POU1F1:1.03878859938;PAX4:0.998756981967;ESR1:0.997058257177;ZNF148:0.964792912147;VSX1,2:0.963400865505;NFATC1..3:0.947601349697;HOX{A6,A7,B6,B7}:0.927356328999;ZNF423:0.908857712062;TFCP2:0.904411427781;BREu{core}:0.903212575342;PAX6:0.891498422494;GFI1B:0.879608373182;MTE{core}:0.876796235968;HOX{A4,D4}:0.873314198564;TLX1..3_NFIC{dimer}:0.873271965194;GLI1..3:0.87270859889;TEAD1:0.835537947122;RREB1:0.826549088565;GTF2A1,2:0.790808975255;LEF1_TCF7_TCF7L1,2:0.763195215161;BPTF:0.752361151378;DBP:0.726565507259;FOXL1:0.722210473441;ADNP_IRX_SIX_ZHX:0.72181011226;ZBTB16:0.715750699653;LHX3,4:0.707600303685;ZFP161:0.691481390211;SOX2:0.687328977695;FOX{I1,J2}:0.677551588091;NR3C1:0.661137622092;SOX{8,9,10}:0.633077852387;NANOG:0.629996463302;PRRX1,2:0.615392533689;UFEwm:0.608446466084;NR6A1:0.606073672794;AR:0.600464133829;SNAI1..3:0.590376278896;LMO2:0.580177705168;TOPORS:0.575992048572;CUX2:0.571455698691;TBX4,5:0.568500397003;REST:0.485702216168;RFX1:0.4682164401;MTF1:0.441696654652;POU6F1:0.418859847307;HAND1,2:0.409476920002;NKX6-1,2:0.40165918715;TGIF1:0.390073353907;SOX17:0.378167284187;FOX{D1,D2}:0.366806456271;NR5A1,2:0.31985697699;TP53:0.302852595664;MEF2{A,B,C,D}:0.264584708988;TLX2:0.252809939124;ARID5B:0.242528532441;ATF2:0.202975564094;NR1H4:0.202847198674;NHLH1,2:0.198583642353;FOXN1:0.190162396011;TFDP1:0.134100625777;HMX1:0.128647547745;FOXO1,3,4:0.115741260391;E2F1..5:0.115389398275;RORA:0.103254273399;PAX3,7:0.102193445113;GATA6:0.070647787248;STAT1,3:0.0475530998455;ZNF143:0.0463217651762;ALX4:0.0406785097543;ZEB1:0.0358058253057;IRF7:0.0188977705163;HNF1A:0.00672354387044;HSF1,2:0.00591438005256;NFY{A,B,C}:-8.09596752957e-05;NRF1:-0.00589135999415;ONECUT1,2:-0.00728719812264;NKX3-1:-0.0205938006779;HIF1A:-0.0522305613998;ATF6:-0.0540887773983;NKX3-2:-0.0694494405568;FOXQ1:-0.0855223198726;EBF1:-0.0884317640179;PBX1:-0.095228518219;OCT4_SOX2{dimer}:-0.116266804494;PITX1..3:-0.121267155621;ZBTB6:-0.126046820708;RXR{A,B,G}:-0.141031734671;SPIB:-0.141420497437;POU2F1..3:-0.169363354782;PAX8:-0.185120931284;ETS1,2:-0.220026374821;JUN:-0.25432203011;STAT2,4,6:-0.256503762503;NANOG{mouse}:-0.274903909895;PDX1:-0.278418790259;FOXA2:-0.281508474461;FOXP3:-0.296449906775;HOX{A5,B5}:-0.304030170837;YY1:-0.341139743678;IRF1,2:-0.35337364008;ATF4:-0.360435210559;ELF1,2,4:-0.406252826356;EVI1:-0.409897906468;SREBF1,2:-0.413067054033;SPI1:-0.444752729573;HNF4A_NR2F1,2:-0.476213436232;CREB1:-0.495395919113;FOS_FOS{B,L1}_JUN{B,D}:-0.508180673162;AHR_ARNT_ARNT2:-0.518693318279;RFX2..5_RFXANK_RFXAP:-0.528073192878;PPARG:-0.575575089639;DMAP1_NCOR{1,2}_SMARC:-0.590762936276;HLF:-0.710576585667;NFKB1_REL_RELA:-0.730180071895;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.735158699647;FOSL2:-0.739549189028;NKX2-2,8:-0.813203140312;NFIX:-0.818516827145;BACH2:-0.83437450151;MYOD1:-0.841280993346;CEBPA,B_DDIT3:-0.930448081245;RUNX1..3:-0.931067915298;EN1,2:-0.947814672128;STAT5{A,B}:-0.9520778527;MAFB:-0.965412552501;PAX1,9:-0.982290185928;NFE2:-0.984658056196;FOX{F1,F2,J1}:-0.985617161304;MYB:-1.04271111551;HOXA9_MEIS1:-1.05487692975;ESRRA:-1.09697973492;ATF5_CREB3:-1.14439879664;CRX:-1.16095634047;NFIL3:-1.19005652763;ELK1,4_GABP{A,B1}:-1.21118829175;NFE2L2:-1.227660671;PAX2:-1.25053205598;HES1:-1.35064913107;NFE2L1:-1.52344422222;bHLH_family:-1.9622131209;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.01983128225
|top_motifs=MYBL2:2.63557593049;ZNF384:2.50080012854;TBP:2.45654330448;HBP1_HMGB_SSRP1_UBTF:2.44650011245;NKX2-3_NKX2-5:2.43206408597;TAL1_TCF{3,4,12}:2.42994042487;RBPJ:2.33071266631;PRDM1:2.27604996551;MAZ:2.18664862448;MZF1:2.15591842383;RXRA_VDR{dimer}:2.14349146575;CDC5L:2.08214380395;NKX2-1,4:2.05325789498;GATA4:1.92737682864;TFAP2{A,C}:1.85401055741;PATZ1:1.84918560649;FOXM1:1.70604733162;CDX1,2,4:1.70481400275;XCPE1{core}:1.70283046529;ZNF238:1.67245686051;MED-1{core}:1.66351439402;TEF:1.64942697125;GTF2I:1.64211147148;SRF:1.64157949207;IKZF2:1.62048862204;TFAP4:1.61617598495;IKZF1:1.54305135569;EP300:1.48753932679;FOXP1:1.48242896334;ZIC1..3:1.47572378276;SP1:1.47422062744;POU5F1:1.46420173337;KLF4:1.44776140643;T:1.43360296938;HMGA1,2:1.41688781656;MYFfamily:1.41328664898;HIC1:1.4114212416;SMAD1..7,9:1.38070118599;EGR1..3:1.35837041576;GZF1:1.35403472722;ALX1:1.33430008911;AIRE:1.31830688418;PAX5:1.26804061822;POU3F1..4:1.26512764779;SOX5:1.25197826829;GFI1:1.24582381337;FOXD3:1.19402575047;GCM1,2:1.19160373645;TFAP2B:1.17561426945;SPZ1:1.15638826506;XBP1:1.09333583857;POU1F1:1.03878859938;PAX4:0.998756981967;ESR1:0.997058257177;ZNF148:0.964792912147;VSX1,2:0.963400865505;NFATC1..3:0.947601349697;HOX{A6,A7,B6,B7}:0.927356328999;ZNF423:0.908857712062;TFCP2:0.904411427781;BREu{core}:0.903212575342;PAX6:0.891498422494;GFI1B:0.879608373182;MTE{core}:0.876796235968;HOX{A4,D4}:0.873314198564;TLX1..3_NFIC{dimer}:0.873271965194;GLI1..3:0.87270859889;TEAD1:0.835537947122;RREB1:0.826549088565;GTF2A1,2:0.790808975255;LEF1_TCF7_TCF7L1,2:0.763195215161;BPTF:0.752361151378;DBP:0.726565507259;FOXL1:0.722210473441;ADNP_IRX_SIX_ZHX:0.72181011226;ZBTB16:0.715750699653;LHX3,4:0.707600303685;ZFP161:0.691481390211;SOX2:0.687328977695;FOX{I1,J2}:0.677551588091;NR3C1:0.661137622092;SOX{8,9,10}:0.633077852387;NANOG:0.629996463302;PRRX1,2:0.615392533689;UFEwm:0.608446466084;NR6A1:0.606073672794;AR:0.600464133829;SNAI1..3:0.590376278896;LMO2:0.580177705168;TOPORS:0.575992048572;CUX2:0.571455698691;TBX4,5:0.568500397003;REST:0.485702216168;RFX1:0.4682164401;MTF1:0.441696654652;POU6F1:0.418859847307;HAND1,2:0.409476920002;NKX6-1,2:0.40165918715;TGIF1:0.390073353907;SOX17:0.378167284187;FOX{D1,D2}:0.366806456271;NR5A1,2:0.31985697699;TP53:0.302852595664;MEF2{A,B,C,D}:0.264584708988;TLX2:0.252809939124;ARID5B:0.242528532441;ATF2:0.202975564094;NR1H4:0.202847198674;NHLH1,2:0.198583642353;FOXN1:0.190162396011;TFDP1:0.134100625777;HMX1:0.128647547745;FOXO1,3,4:0.115741260391;E2F1..5:0.115389398275;RORA:0.103254273399;PAX3,7:0.102193445113;GATA6:0.070647787248;STAT1,3:0.0475530998455;ZNF143:0.0463217651762;ALX4:0.0406785097543;ZEB1:0.0358058253057;IRF7:0.0188977705163;HNF1A:0.00672354387044;HSF1,2:0.00591438005256;NFY{A,B,C}:-8.09596752957e-05;NRF1:-0.00589135999415;ONECUT1,2:-0.00728719812264;NKX3-1:-0.0205938006779;HIF1A:-0.0522305613998;ATF6:-0.0540887773983;NKX3-2:-0.0694494405568;FOXQ1:-0.0855223198726;EBF1:-0.0884317640179;PBX1:-0.095228518219;OCT4_SOX2{dimer}:-0.116266804494;PITX1..3:-0.121267155621;ZBTB6:-0.126046820708;RXR{A,B,G}:-0.141031734671;SPIB:-0.141420497437;POU2F1..3:-0.169363354782;PAX8:-0.185120931284;ETS1,2:-0.220026374821;JUN:-0.25432203011;STAT2,4,6:-0.256503762503;NANOG{mouse}:-0.274903909895;PDX1:-0.278418790259;FOXA2:-0.281508474461;FOXP3:-0.296449906775;HOX{A5,B5}:-0.304030170837;YY1:-0.341139743678;IRF1,2:-0.35337364008;ATF4:-0.360435210559;ELF1,2,4:-0.406252826356;EVI1:-0.409897906468;SREBF1,2:-0.413067054033;SPI1:-0.444752729573;HNF4A_NR2F1,2:-0.476213436232;CREB1:-0.495395919113;FOS_FOS{B,L1}_JUN{B,D}:-0.508180673162;AHR_ARNT_ARNT2:-0.518693318279;RFX2..5_RFXANK_RFXAP:-0.528073192878;PPARG:-0.575575089639;DMAP1_NCOR{1,2}_SMARC:-0.590762936276;HLF:-0.710576585667;NFKB1_REL_RELA:-0.730180071895;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.735158699647;FOSL2:-0.739549189028;NKX2-2,8:-0.813203140312;NFIX:-0.818516827145;BACH2:-0.83437450151;MYOD1:-0.841280993346;CEBPA,B_DDIT3:-0.930448081245;RUNX1..3:-0.931067915298;EN1,2:-0.947814672128;STAT5{A,B}:-0.9520778527;MAFB:-0.965412552501;PAX1,9:-0.982290185928;NFE2:-0.984658056196;FOX{F1,F2,J1}:-0.985617161304;MYB:-1.04271111551;HOXA9_MEIS1:-1.05487692975;ESRRA:-1.09697973492;ATF5_CREB3:-1.14439879664;CRX:-1.16095634047;NFIL3:-1.19005652763;ELK1,4_GABP{A,B1}:-1.21118829175;NFE2L2:-1.227660671;PAX2:-1.25053205598;HES1:-1.35064913107;NFE2L1:-1.52344422222;bHLH_family:-1.9622131209;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.01983128225
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10055-101H1;search_select_hide=table117:FF:10055-101H1
}}
}}

Latest revision as of 12:18, 3 June 2020

Name:uterus, fetal, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11763
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueuterus
dev stage26 weeks fetus
sexfemale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberB402230
catalog numberCat:RtHFN: Uterus
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005818
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11763 CAGE DRX008757 DRR009629
Accession ID Hg19

Library idBAMCTSS
CNhs11763 DRZ001054 DRZ002439
Accession ID Hg38

Library idBAMCTSS
CNhs11763 DRZ012404 DRZ013789
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0774
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.152
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.148
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.386
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.629
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.116
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0148
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.346
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0319
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.346
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0415
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.346
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.346
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0688
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70.346
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.402
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.00525
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.42
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.148
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0115
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0236
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.108
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.259
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.42
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.851
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.148
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.101
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.259
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.259
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.77
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0.42
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0705
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11763

Jaspar motifP-value
MA0002.21.67785e-5
MA0003.10.212
MA0004.10.0369
MA0006.10.767
MA0007.10.539
MA0009.10.203
MA0014.10.284
MA0017.10.00352
MA0018.20.0957
MA0019.10.909
MA0024.10.349
MA0025.10.0571
MA0027.10.767
MA0028.10.00187
MA0029.10.474
MA0030.10.785
MA0031.10.973
MA0035.20.167
MA0038.10.256
MA0039.20.751
MA0040.10.257
MA0041.10.508
MA0042.10.844
MA0043.10.00741
MA0046.10.849
MA0047.20.0633
MA0048.10.751
MA0050.10.00262
MA0051.10.00244
MA0052.10.477
MA0055.10.0844
MA0057.10.804
MA0058.10.00742
MA0059.10.0027
MA0060.10.307
MA0061.13.09672e-4
MA0062.22.48648e-7
MA0065.23.81654e-4
MA0066.10.0993
MA0067.10.0369
MA0068.18.55126e-6
MA0069.10.404
MA0070.10.347
MA0071.10.15
MA0072.10.294
MA0073.10.327
MA0074.10.887
MA0076.19.56098e-4
MA0077.10.828
MA0078.10.464
MA0079.20.957
MA0080.25.15652e-8
MA0081.10.0123
MA0083.10.0805
MA0084.10.301
MA0087.10.146
MA0088.10.0288
MA0090.10.377
MA0091.10.918
MA0092.10.447
MA0093.10.0387
MA0099.21.29286e-18
MA0100.10.379
MA0101.13.37668e-4
MA0102.20.0499
MA0103.10.394
MA0104.20.00321
MA0105.17.88965e-8
MA0106.10.111
MA0107.16.86814e-4
MA0108.21.25541e-9
MA0111.10.855
MA0112.20.00307
MA0113.10.622
MA0114.10.00149
MA0115.10.00283
MA0116.12.37807e-4
MA0117.10.282
MA0119.10.252
MA0122.10.859
MA0124.10.241
MA0125.10.413
MA0131.10.813
MA0135.10.374
MA0136.14.04735e-11
MA0137.20.573
MA0138.20.603
MA0139.10.0669
MA0140.10.231
MA0141.10.00481
MA0142.10.0809
MA0143.10.514
MA0144.10.706
MA0145.10.868
MA0146.10.101
MA0147.10.00299
MA0148.10.0239
MA0149.10.0129
MA0150.14.9565e-9
MA0152.10.0249
MA0153.10.16
MA0154.10.0013
MA0155.10.951
MA0156.17.86274e-7
MA0157.10.626
MA0159.10.0147
MA0160.10.00132
MA0162.10.564
MA0163.11.02523e-7
MA0164.10.288
MA0258.10.0366
MA0259.10.324



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11763

Novel motifP-value
10.01
100.0443
1000.311
1010.53
1020.526
1030.247
1040.712
1050.873
1060.238
1070.678
1080.877
1090.00727
110.0801
1100.191
1110.0086
1120.211
1130.0367
1147.1111e-4
1150.184
1160.933
1170.00414
1180.0792
1190.409
120.278
1200.388
1210.751
1220.306
1230.0552
1240.895
1250.278
1260.519
1270.0687
1280.543
1290.775
130.0657
1300.36
1310.91
1320.129
1330.972
1340.843
1350.777
1360.652
1370.134
1380.252
1390.155
140.403
1400.865
1410.602
1420.592
1430.0209
1440.777
1450.839
1460.412
1470.821
1480.0233
1490.659
150.0275
1500.486
1510.357
1520.222
1530.846
1540.913
1550.0806
1560.61
1570.522
1580.12
1590.621
160.412
1600.704
1610.624
1620.135
1630.534
1640.0444
1650.441
1660.0886
1670.0261
1680.242
1690.0252
170.325
180.0299
191
20.602
200.231
210.399
220.465
230.666
240.108
250.31
260.0212
270.733
280.668
290.0208
30.213
300.135
310.843
320.0128
330.188
340.652
350.166
360.0205
370.0206
380.27
390.668
40.9
400.0635
410.0256
420.23
430.13
440.958
450.527
460.136
470.0539
480.227
490.108
50.27
500.936
510.565
520.712
530.815
540.668
550.602
560.511
570.198
580.408
590.354
60.963
600.402
610.352
620.218
630.398
640.36
650.324
660.757
670.468
680.448
690.606
70.153
700.0179
710.0477
720.313
730.0195
740.477
750.00437
760.136
770.813
780.172
790.822
80.09
800.581
810.676
820.373
830.596
840.725
850.327
860.0759
870.0188
880.801
890.312
90.826
900.177
910.502
920.433
930.202
940.0341
950.00602
960.0999
970.932
980.131
990.416



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11763


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0005795 (embryonic uterus)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010055 (human uterus - fetal sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0005795 (embryonic uterus)

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