FF:10048-101G3: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005760 | ||
| | |accession_numbers=CAGE;DRX008726;DRR009598;DRZ001023;DRZ002408;DRZ012373;DRZ013758 | ||
| | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001135,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010048 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr19:46801639..46801699,+!p1@HIF3A!2.08!118.65!HIF3A;;chr16:86544113..86544145,+!p1@FOXF1!2.05!138.02!FOXF1;;chr7:35293685..35293718,-!p1@TBX20!2.05!111.05!TBX20;;chr2:19558373..19558392,-!p1@OSR1!1.90!205.68!OSR1;;chr4:174451370..174451387,-!p1@HAND2!1.89!76.49!HAND2;;chr6:134210243..134210257,+!p1@TCF21!1.88!74.03!TCF21;;chr17:53342311..53342400,+!p1@HLF!1.73!59.82!HLF;;chr12:52445218..52445237,+!p1@NR4A1!1.68!563.11!NR4A1;;chr12:52437488..52437507,+!p2@NR4A1!1.60!38.73!NR4A1;;chr1:61548374..61548415,+!p4@NFIA!1.59!68.64!NFIA;;chr11:113930425..113930471,+!p1@ZBTB16!1.56!50.26!ZBTB16;;chr5:134369879..134369898,-!p2@PITX1!1.55!34.08!PITX1;;chrY:21906594..21906622,-!p1@KDM5D!1.45!27.21!KDM5D;;chr4:174450089..174450153,-!p2@HAND2!1.43!25.74!HAND2;;chr17:59529743..59529798,+!p1@TBX4!1.42!25.25!TBX4;;chr8:106330656..106330684,+!p1@ZFPM2!1.41!62.76!ZFPM2;;chr5:134369905..134369972,-!p1@PITX1!1.40!37.02!PITX1;;chr20:62680984..62680999,-!p1@SOX18!1.38!30.40!SOX18;;chr4:81118647..81118666,+!p1@PRDM8!1.38!29.91!PRDM8;;chr1:164528410..164528428,+!p1@PBX1!1.32!144.15!PBX1;;chr7:114054885..114054910,+!p4@FOXP2!1.32!19.86!FOXP2;;chr9:102584159..102584174,+!p2@NR4A3!1.31!34.81!NR4A3;;chr11:12696579..12696611,+!p4@TEAD1!1.31!19.61!TEAD1;;chr16:67198633..67198671,+!p1@HSF4!1.31!19.61!HSF4;;chr1:61548069..61548102,+!p3@NFIA!1.30!45.35!NFIA;;chr3:128212033..128212051,-!p1@GATA2!1.30!19.12!GATA2;;chr7:113726357..113726443,+!p1@FOXP2!1.29!31.62!FOXP2;;chr1:201979703..201979721,+!p2@ELF3!1.29!18.63!ELF3;;chr20:61051039..61051057,-!p1@GATA5!1.28!18.14!GATA5;;chr18:19749541..19749557,+!p1@GATA6!1.27!55.16!GATA6;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.25!16.92!PEG3;;chr7:27239740..27239759,-!p2@HOXA13!1.25!16.67!HOXA13;;chr7:27192185..27192209,-!p1@HOXA3!1.24!16.18!HOXA3;;chr11:113930401..113930422,+!p3@ZBTB16!1.24!16.18!ZBTB16;;chrX:131545395..131545413,-!p16@MBNL3!1.23!15.93!MBNL3;;chr5:158526917..158526932,-!p1@EBF1!1.22!38.24!EBF1;;chr22:38380543..38380569,-!p1@SOX10!1.22!15.69!SOX10;;chr1:44513995..44514031,+!p1@KLF17!1.22!15.44!KLF17;;chr15:42749722..42749739,-!p2@ZFP106!1.21!26.97!ZFP106;;chr17:38256822..38256851,-!p1@NR1D1!1.20!115.71!NR1D1;;chr3:71294213..71294240,-!p30@FOXP1!1.20!14.95!FOXP1;;chr5:122424955..122424988,+!p2@PRDM6!1.20!14.95!PRDM6;;chr21:39870339..39870443,-!p1@ERG!1.20!14.71!ERG;;chrY:21906761..21906810,-!p2@KDM5D!1.19!14.46!KDM5D;;chr4:174451350..174451363,-!p3@HAND2!1.18!13.97!HAND2;;chr1:61548225..61548299,+!p1@NFIA!1.17!176.75!NFIA;;chr16:79634624..79634642,-!p1@MAF!1.17!54.18!MAF;;chr1:61547894..61547968,+!p2@NFIA!1.17!39.96!NFIA;;chr11:113930291..113930339,+!p2@ZBTB16!1.16!22.06!ZBTB16;;chr5:122424918..122424944,+!p1@PRDM6!1.15!12.99!PRDM6;;chr7:63505799..63505904,+!p1@ZNF727!1.15!12.99!ZNF727;;chr6:19837592..19837621,+!p1@ID4!1.14!78.20!ID4;;chr16:67198683..67198698,+!p2@HSF4!1.14!12.75!HSF4;;chr17:7492684..7492778,-!p2@SOX15!1.13!26.48!SOX15;;chr4:111544219..111544240,-!p1@PITX2!1.13!12.50!PITX2;;chr1:164528445..164528459,+!p2@PBX1!1.11!37.26!PBX1;;chr17:38256799..38256815,-!p3@NR1D1!1.11!21.82!NR1D1;;chr16:79634595..79634620,-!p2@MAF!1.11!21.57!MAF;;chr7:44143925..44143970,+!p1@AEBP1!1.10!259.61!AEBP1;;chr9:102584262..102584276,+!p1@NR4A3!1.10!25.74!NR4A3;;chr4:111558135..111558198,-!p2@PITX2!1.10!11.52!PITX2;;chr2:145277882..145277967,-!p3@ZEB2!1.09!19.61!ZEB2;;chr2:66662281..66662308,+!p1@MEIS1!1.08!38.49!MEIS1;;chr6:1312325..1312340,+!p1@FOXQ1!1.08!17.90!FOXQ1;;chr1:40105299..40105326,-!p1@HEYL!1.08!11.03!HEYL;;chr3:69788576..69788648,+!p1@MITF!1.07!57.86!MITF;;chr18:19749517..19749531,+!p3@GATA6!1.07!19.37!GATA6;;chr12:80085061..80085119,-!p6@PAWR!1.07!17.41!PAWR;;chr3:25470156..25470227,+!p2@RARB!1.07!10.79!RARB;;chr3:24536253..24536328,-!p1@THRB!1.06!19.86!THRB;;chr18:19749386..19749404,+!p2@GATA6!1.06!14.95!GATA6;;chr3:114866084..114866118,-!p2@ZBTB20!1.04!36.53!ZBTB20;;chr7:44143978..44143989,+!p2@AEBP1!1.04!18.39!AEBP1;;chr1:10754477..10754517,-!p1@CASZ1!1.04!16.92!CASZ1;;chr5:158526459..158526481,-!p2@EBF1!1.04!13.48!EBF1;;chr3:12330560..12330579,+!p1@PPARG!1.04!11.52!PPARG;;chr5:158527104..158527135,-!p4@EBF1!1.03!9.81!EBF1;;chr9:114287433..114287513,+!p1@ZNF483!1.02!25.01!ZNF483;;chr9:16870710..16870763,-!p1@BNC2!1.02!16.42!BNC2;;chr20:51588873..51588953,+!p1@TSHZ2!1.02!12.50!TSHZ2;;chr1:201979743..201979762,+!p1@ELF3!1.02!9.56!ELF3;;chr7:27205136..27205164,-!p1@HOXA9!1.02!9.56!HOXA9;;chr2:176969228..176969260,+!p1@HOXD11!1.02!9.56!HOXD11;;chr3:187463179..187463201,-!p2@BCL6!1.01!38.98!BCL6;;chr19:46800289..46800327,+!p2@HIF3A!1.01!9.32!HIF3A;;chr15:37392616..37392638,-!p2@MEIS2!1.00!28.93!MEIS2;;chr2:208031943..208031978,-!p5@KLF7!1.00!12.01!KLF7;;chr3:126076242..126076257,-!p1@KLF15!1.00!11.28!KLF15;;chr3:18466787..18466839,-!p1@SATB1!0.99!40.45!SATB1;;chr22:41763452..41763466,+!p2@TEF!0.99!8.83!TEF;;chr10:28034739..28034756,-!p1@MKX!0.99!8.83!MKX;;chr8:55370487..55370503,+!p1@SOX17!0.99!8.83!SOX17;;chr9:14314131..14314147,-!p2@NFIB!0.98!48.54!NFIB;;chr12:24715376..24715432,-!p1@SOX5!0.98!11.03!SOX5;;chr15:37392724..37392757,-!p1@MEIS2!0.97!39.22!MEIS2;;chr2:100721328..100721348,-!p4@AFF3!0.97!8.34!AFF3;;chr3:141151009..141151033,+!p10@ZBTB38!0.97!8.34!ZBTB38;;chr7:114054917..114054938,+!p8@FOXP2!0.97!8.34!FOXP2;;chr8:77593474..77593612,+!p1@ZFHX4!0.96!35.06!ZFHX4;;chr15:37390850..37390909,-!p3@MEIS2!0.96!16.42!MEIS2;;chr1:61924375..61924380,+!p6@NFIA!0.96!11.52!NFIA;;chr20:50179368..50179392,-!p2@NFATC2!0.96!10.54!NFATC2;;chr7:27224842..27224872,-!p1@HOXA11!0.96!8.09!HOXA11;;chr19:16435625..16435682,+!p1@KLF2!0.95!261.08!KLF2;;chr3:141150883..141150961,+!p6@ZBTB38!0.95!7.84!ZBTB38;;chr10:63809106..63809127,+!p1@ARID5B!0.94!108.36!ARID5B;;chr2:66662249..66662267,+!p2@MEIS1!0.94!30.89!MEIS1;;chr17:1959369..1959388,+!p2@HIC1!0.94!21.08!HIC1;;chr1:170632285..170632309,+!p1@PRRX1!0.94!8.83!PRRX1;;chr1:212782094..212782109,+!p1@ATF3!0.93!211.81!ATF3;;chr2:97202480..97202499,+!p1@ARID5A!0.93!79.18!ARID5A;;chr16:79633894..79633954,-!p3@MAF!0.93!14.71!MAF;;chr7:28448965..28448994,+!p2@CREB5!0.91!26.23!CREB5;;chr20:2673383..2673441,+!p1@EBF4!0.91!11.52!EBF4;;chr8:25902876..25902936,-!p1@EBF2!0.91!7.11!EBF2;;chr12:80085120..80085156,-!p14@PAWR!0.91!7.11!PAWR;;chr12:26277956..26277980,-!p1@BHLHE41!0.90!26.23!BHLHE41;;chr1:8483756..8483809,-!p5@RERE!0.90!20.35!RERE;;chr15:61521417..61521460,-!p2@RORA!0.90!15.93!RORA;;chr10:8096631..8096660,+!p1@GATA3!0.90!8.58!GATA3;;chr18:42260840..42260860,+!p2@SETBP1!0.90!6.86!SETBP1;;chr7:15726296..15726315,-!p1@MEOX2!0.90!6.86!MEOX2;;chr8:93115274..93115323,-!p4@RUNX1T1!0.90!6.86!RUNX1T1;;chr17:59477233..59477263,+!p1@TBX2!0.89!22.06!TBX2;;chr18:42260059..42260132,+!p1@SETBP1!0.89!11.52!SETBP1;;chrX:107018969..107019024,-!p6@TSC22D3!0.89!9.56!TSC22D3;;chr8:106330696..106330719,+!p2@ZFPM2!0.89!8.83!ZFPM2;;chr14:75746722..75746777,+!p2@FOS!0.89!8.83!FOS;;chr14:75745523..75745537,+!p1@FOS!0.88!823.70!FOS;;chr6:35464817..35464894,-!p1@TEAD3!0.88!106.64!TEAD3;;chr5:92918919..92918942,+!p1@NR2F1!0.88!30.64!NR2F1;;chr2:166326200..166326216,+!p1@CSRNP3!0.88!9.81!CSRNP3;;chr19:57183114..57183145,-!p1@ZNF835!0.88!7.35!ZNF835;;chr4:149363494..149363543,-!p1@NR3C2!0.88!6.62!NR3C2;;chr5:88178983..88179012,-!p1@MEF2C!0.87!52.22!MEF2C;;chr6:28303901..28303944,-!p2@ZNF323!0.87!10.79!ZNF323;;chr2:66662895..66662907,+!p3@MEIS1!0.87!8.09!MEIS1;;chr9:14314522..14314556,-!p3@NFIB!0.86!15.20!NFIB;;chr3:126076264..126076305,-!p2@KLF15!0.86!8.83!KLF15;;chr9:128510454..128510469,+!p3@PBX3!0.86!8.34!PBX3;;chr10:31608127..31608156,+!p1@ZEB1!0.85!119.14!ZEB1;;chrX:70315688..70315709,+!p1@FOXO4!0.85!14.71!FOXO4;;chr15:80696703..80696754,+!p1@ARNT2!0.85!8.34!ARNT2;;chr2:145275162..145275202,-!p2@ZEB2!0.84!37.26!ZEB2;;chr3:71630980..71631110,-!p3@FOXP1!0.84!21.82!FOXP1;;chr9:102584241..102584261,+!p4@NR4A3!0.84!9.56!NR4A3;;chr3:169381420..169381535,-!p1@MECOM!0.84!7.11!MECOM;;chr7:27224795..27224840,-!p2@HOXA11!0.84!5.88!HOXA11;;chr8:10588010..10588030,-!p1@SOX7!0.84!5.88!SOX7;;chr11:47400078..47400106,-!p1@SPI1!0.84!5.88!SPI1;;chr18:42260920..42260951,+!p4@SETBP1!0.84!5.88!SETBP1;;chr19:22193731..22193751,-!p1@ZNF208!0.84!5.88!ZNF208;;chrX:106960285..106960299,-!p1@TSC22D3!0.83!165.48!TSC22D3;;chr10:63809013..63809041,+!p3@ARID5B!0.83!34.32!ARID5B;;chr19:38085768..38085821,+!p1@ZNF540!0.83!8.83!ZNF540;;chr9:73028814..73028895,-!p1@KLF9!0.82!59.33!KLF9;;chrX:106960180..106960197,-!p2@TSC22D3!0.82!22.55!TSC22D3;;chr18:77155922..77155939,+!p1@NFATC1!0.82!16.42!NFATC1;;chr7:19157043..19157088,-!p2@TWIST1!0.82!14.95!TWIST1;;chr3:25469724..25469773,+!p1@RARB!0.82!8.34!RARB;;chr7:44143997..44144008,+!p3@AEBP1!0.82!7.35!AEBP1;;chr4:57522166..57522260,-!p2@HOPX!0.82!6.62!HOPX;;chr5:158526756..158526797,-!p3@EBF1!0.82!5.64!EBF1;;chr11:8040739..8040815,+!p4@TUB!0.82!5.64!TUB;;chr19:6110474..6110551,-!p1@RFX2!0.81!35.55!RFX2;;chr15:37392593..37392607,-!p13@MEIS2!0.81!6.62!MEIS2;;chr11:34642612..34642646,+!p1@EHF!0.81!5.39!EHF;;chr7:27196267..27196311,-!p1@HOXA7!0.81!5.39!HOXA7;;chr2:157189180..157189290,-!p1@NR4A2!0.80!29.91!NR4A2;;chr11:12696002..12696022,+!p2@TEAD1!0.80!13.97!TEAD1;;chr1:61869835..61869848,+!p8@NFIA!0.80!7.11!NFIA;;chr8:48650715..48650735,-!p1@CEBPD!0.79!719.27!CEBPD;;chr17:59477197..59477212,+!p2@TBX2!0.79!9.32!TBX2;;chr8:99956662..99956684,+!p1@OSR2!0.79!8.34!OSR2;;chr15:37392703..37392717,-!p8@MEIS2!0.79!7.60!MEIS2;;chr2:113057415..113057477,+!p3@ZC3H6!0.79!6.86!ZC3H6;;chr3:69915385..69915438,+!p3@MITF!0.79!5.15!MITF;;chr4:57522598..57522664,-!p3@HOPX!0.79!5.15!HOPX;;chr19:54058073..54058088,+!p1@ZNF331!0.79!5.15!ZNF331;;chr10:31610110..31610159,+!p2@ZEB1!0.79!5.15!ZEB1;;chr18:19749504..19749515,+!p5@GATA6!0.79!5.15!GATA6;;chr5:174151612..174151633,+!p2@MSX2!0.79!5.15!MSX2;;chr8:93115584..93115642,-!p5@RUNX1T1!0.79!5.15!RUNX1T1;;chr5:92918894..92918912,+!p2@NR2F1!0.78!17.65!NR2F1;;chrX:101186981..101187030,-!p1@ZMAT1!0.78!17.65!ZMAT1;;chr17:38256877..38256900,-!p2@NR1D1!0.78!17.41!NR1D1;;chrX:66763856..66763896,+!p1@AR!0.78!7.60!AR;;chr6:1389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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 66: | Line 41: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|is_a=EFO:0002091;;FF: | |hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/smooth%2520muscle%252c%2520adult%252c%2520pool1.CNhs11755.10048-101G3.hg19.nobarcode.bam | ||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/smooth%2520muscle%252c%2520adult%252c%2520pool1.CNhs11755.10048-101G3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/smooth%2520muscle%252c%2520adult%252c%2520pool1.CNhs11755.10048-101G3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/smooth%2520muscle%252c%2520adult%252c%2520pool1.CNhs11755.10048-101G3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/smooth%2520muscle%252c%2520adult%252c%2520pool1.CNhs11755.10048-101G3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10048-101G3 | |||
|is_a=EFO:0002091;;FF:0010048 | |||
|is_obsolete= | |||
|library_id=CNhs11755 | |||
|library_id_phase_based=2:CNhs11755 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10048 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10048 | |||
|name=smooth muscle, adult, pool1 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs11755,LSID820,release009,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |||
|rna_catalog_number=Cat:636547 | |||
|rna_concentration=1 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0 | |||
|rna_lot_number=9052728A | |||
|rna_od260/230= | |||
|rna_od260/280= | |||
|rna_position=G3 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=101G3 | |||
|rna_weight_ug=50 | |||
|sample_age= | |||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |||
|sample_cell_line= | |||
|sample_cell_lot=NA | |||
|sample_cell_type=CELL MIXTURE - tissue sample | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company=Clontech | |||
|sample_description= | |||
|sample_dev_stage=20-68 years old adult | |||
|sample_disease=normal | |||
|sample_donor(cell lot)=12 pool | |||
|sample_ethnicity=C | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.64113736982687e-206!GO:0005737;cytoplasm;4.68920666683668e-170!GO:0043226;organelle;9.02440092474965e-155!GO:0043229;intracellular organelle;1.84700090380887e-154!GO:0043231;intracellular membrane-bound organelle;2.71292076635679e-144!GO:0043227;membrane-bound organelle;3.09655217370962e-144!GO:0044444;cytoplasmic part;1.00186781751941e-102!GO:0005515;protein binding;9.50631196524287e-96!GO:0044422;organelle part;1.0719366894255e-79!GO:0044446;intracellular organelle part;1.27231748550157e-78!GO:0032991;macromolecular complex;3.97367274544062e-68!GO:0043170;macromolecule metabolic process;3.087734206942e-65!GO:0044238;primary metabolic process;7.38690688156141e-65!GO:0044237;cellular metabolic process;3.50235267459437e-62!GO:0005634;nucleus;2.58300441080348e-60!GO:0030529;ribonucleoprotein complex;3.49496916517829e-55!GO:0003723;RNA binding;2.01759500009834e-51!GO:0043233;organelle lumen;1.82715707075866e-49!GO:0031974;membrane-enclosed lumen;1.82715707075866e-49!GO:0044428;nuclear part;1.15167662655226e-47!GO:0016043;cellular component organization and biogenesis;9.23503277265434e-46!GO:0005739;mitochondrion;2.78496189756708e-44!GO:0019538;protein metabolic process;9.12902707183253e-42!GO:0033036;macromolecule localization;4.18948762865597e-40!GO:0015031;protein transport;5.72864417811878e-39!GO:0010467;gene expression;1.21981105324517e-38!GO:0045184;establishment of protein localization;3.43854328490886e-37!GO:0008104;protein localization;5.60716919813873e-37!GO:0043283;biopolymer metabolic process;2.1259726926432e-36!GO:0044260;cellular macromolecule metabolic process;5.54163006294609e-36!GO:0043234;protein complex;1.90200007058191e-35!GO:0044267;cellular protein metabolic process;8.27760913988389e-35!GO:0031090;organelle membrane;1.93302631930855e-32!GO:0016071;mRNA metabolic process;4.42081285837766e-32!GO:0006412;translation;6.83895489554405e-32!GO:0005840;ribosome;1.24965840105299e-31!GO:0044429;mitochondrial part;3.0755642236083e-31!GO:0006396;RNA processing;2.27634443796631e-30!GO:0031967;organelle envelope;3.69306442649488e-30!GO:0005829;cytosol;3.77606766320112e-30!GO:0031975;envelope;6.69542864686728e-30!GO:0046907;intracellular transport;2.37591541621743e-29!GO:0031981;nuclear lumen;2.83665819258151e-29!GO:0008380;RNA splicing;5.28319029544894e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.42489588718286e-27!GO:0003735;structural constituent of ribosome;1.12226524736756e-26!GO:0006886;intracellular protein transport;3.83039700576011e-26!GO:0006397;mRNA processing;4.33197934300533e-26!GO:0065003;macromolecular complex assembly;7.61829188885384e-25!GO:0033279;ribosomal subunit;1.30886931740687e-24!GO:0022607;cellular component assembly;3.134369982253e-23!GO:0008134;transcription factor binding;4.04371468752836e-23!GO:0005740;mitochondrial envelope;7.81530273062681e-21!GO:0016070;RNA metabolic process;1.91920637774965e-20!GO:0031966;mitochondrial membrane;4.02582312368598e-20!GO:0005654;nucleoplasm;5.7361369043615e-20!GO:0009059;macromolecule biosynthetic process;8.43865837567183e-20!GO:0005681;spliceosome;1.3644914881113e-19!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.80081845984047e-19!GO:0019866;organelle inner membrane;2.8229002332895e-19!GO:0003676;nucleic acid binding;4.74168724018687e-19!GO:0044249;cellular biosynthetic process;6.27414318290195e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.9004690403281e-19!GO:0051641;cellular localization;8.37884849954155e-19!GO:0051649;establishment of cellular localization;9.88175964266992e-19!GO:0006996;organelle organization and biogenesis;3.13235365428248e-18!GO:0005743;mitochondrial inner membrane;5.19208046879839e-18!GO:0006119;oxidative phosphorylation;6.05007999588678e-18!GO:0044451;nucleoplasm part;9.55989066397791e-18!GO:0009058;biosynthetic process;3.16290280703147e-17!GO:0006512;ubiquitin cycle;3.73692470272268e-17!GO:0043228;non-membrane-bound organelle;4.52595066363439e-17!GO:0043232;intracellular non-membrane-bound organelle;4.52595066363439e-17!GO:0000166;nucleotide binding;4.61800985663819e-17!GO:0044445;cytosolic part;1.95988061410671e-16!GO:0016192;vesicle-mediated transport;3.27436360618599e-16!GO:0022618;protein-RNA complex assembly;5.6340798748454e-16!GO:0050794;regulation of cellular process;8.05089384854471e-16!GO:0048770;pigment granule;1.46830064873464e-15!GO:0042470;melanosome;1.46830064873464e-15!GO:0005746;mitochondrial respiratory chain;2.16221007969295e-15!GO:0044455;mitochondrial membrane part;2.16221007969295e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;5.99543908301771e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.03847786847369e-14!GO:0019941;modification-dependent protein catabolic process;1.25435045755359e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.25435045755359e-14!GO:0050789;regulation of biological process;1.31409081258754e-14!GO:0003712;transcription cofactor activity;1.60713531572164e-14!GO:0044257;cellular protein catabolic process;2.13686624094047e-14!GO:0008135;translation factor activity, nucleic acid binding;2.67002920135096e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.89549158961476e-14!GO:0016874;ligase activity;5.56516434874952e-14!GO:0006457;protein folding;1.0343823889772e-13!GO:0016462;pyrophosphatase activity;1.09239871366564e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.24104911345118e-13!GO:0015935;small ribosomal subunit;1.57539455979892e-13!GO:0017111;nucleoside-triphosphatase activity;1.9073982084037e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;1.98467114933177e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.99960190391593e-13!GO:0003954;NADH dehydrogenase activity;2.99960190391593e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.99960190391593e-13!GO:0006605;protein targeting;3.19762573884826e-13!GO:0005794;Golgi apparatus;3.46591407163303e-13!GO:0005783;endoplasmic reticulum;3.5697206642475e-13!GO:0031980;mitochondrial lumen;4.13922309493728e-13!GO:0005759;mitochondrial matrix;4.13922309493728e-13!GO:0044265;cellular macromolecule catabolic process;4.57378720796882e-13!GO:0048523;negative regulation of cellular process;5.06767360362789e-13!GO:0048193;Golgi vesicle transport;6.82134367522251e-13!GO:0043412;biopolymer modification;8.0744060593762e-13!GO:0006366;transcription from RNA polymerase II promoter;1.22102868574933e-12!GO:0043687;post-translational protein modification;1.22623552349103e-12!GO:0043285;biopolymer catabolic process;2.8550756088063e-12!GO:0015934;large ribosomal subunit;4.07101113676679e-12!GO:0012505;endomembrane system;5.10061980915806e-12!GO:0006464;protein modification process;6.71035589420633e-12!GO:0016564;transcription repressor activity;6.76239100499408e-12!GO:0030163;protein catabolic process;1.37464523492265e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.63275960765278e-11!GO:0042773;ATP synthesis coupled electron transport;1.63275960765278e-11!GO:0030964;NADH dehydrogenase complex (quinone);2.05940071632329e-11!GO:0045271;respiratory chain complex I;2.05940071632329e-11!GO:0005747;mitochondrial respiratory chain complex I;2.05940071632329e-11!GO:0003743;translation initiation factor activity;3.3301063384288e-11!GO:0032553;ribonucleotide binding;3.89626504730531e-11!GO:0032555;purine ribonucleotide binding;3.89626504730531e-11!GO:0048519;negative regulation of biological process;4.23619278548968e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.90076245882501e-11!GO:0000502;proteasome complex (sensu Eukaryota);5.22322135862325e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.26693464110877e-11!GO:0017076;purine nucleotide binding;5.7512287559807e-11!GO:0006413;translational initiation;6.89956967846919e-11!GO:0016604;nuclear body;1.04911309388804e-10!GO:0006461;protein complex assembly;1.05708278211193e-10!GO:0006913;nucleocytoplasmic transport;1.52818478529991e-10!GO:0008565;protein transporter activity;2.35763948076847e-10!GO:0016607;nuclear speck;3.22894348771907e-10!GO:0065007;biological regulation;3.4564969358814e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.73590041036611e-10!GO:0051169;nuclear transport;3.99631526814612e-10!GO:0051082;unfolded protein binding;4.0175008854248e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.60292611448434e-10!GO:0005635;nuclear envelope;6.70370510620293e-10!GO:0006446;regulation of translational initiation;7.41997863960544e-10!GO:0009057;macromolecule catabolic process;8.37015720799276e-10!GO:0008092;cytoskeletal protein binding;9.34586670975817e-10!GO:0009055;electron carrier activity;1.16569690498888e-09!GO:0030036;actin cytoskeleton organization and biogenesis;1.28037369342216e-09!GO:0044248;cellular catabolic process;1.41692105039408e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;2.11696562242885e-09!GO:0000375;RNA splicing, via transesterification reactions;2.11696562242885e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.11696562242885e-09!GO:0005730;nucleolus;2.24375386003311e-09!GO:0019222;regulation of metabolic process;2.53300834218881e-09!GO:0008639;small protein conjugating enzyme activity;2.83563741057644e-09!GO:0019787;small conjugating protein ligase activity;3.41056155343555e-09!GO:0031965;nuclear membrane;3.44757867320132e-09!GO:0031324;negative regulation of cellular metabolic process;3.68612221313637e-09!GO:0004842;ubiquitin-protein ligase activity;4.31507478609911e-09!GO:0016481;negative regulation of transcription;5.85314834183815e-09!GO:0006259;DNA metabolic process;8.65252226081274e-09!GO:0030029;actin filament-based process;1.08117759775642e-08!GO:0005761;mitochondrial ribosome;1.17123686981747e-08!GO:0000313;organellar ribosome;1.17123686981747e-08!GO:0017038;protein import;1.30418884007335e-08!GO:0003714;transcription corepressor activity;1.43615099049738e-08!GO:0009892;negative regulation of metabolic process;1.44124882667078e-08!GO:0009060;aerobic respiration;1.768257873856e-08!GO:0045333;cellular respiration;2.21926047746693e-08!GO:0005793;ER-Golgi intermediate compartment;2.9006515139977e-08!GO:0051246;regulation of protein metabolic process;2.91000529911541e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.79142198827209e-08!GO:0051186;cofactor metabolic process;4.99280270920578e-08!GO:0003924;GTPase activity;5.26220701076835e-08!GO:0012501;programmed cell death;5.5304120880474e-08!GO:0008219;cell death;7.58679637560465e-08!GO:0016265;death;7.58679637560465e-08!GO:0006793;phosphorus metabolic process;8.70452852067423e-08!GO:0006796;phosphate metabolic process;8.70452852067423e-08!GO:0031252;leading edge;1.03966499869608e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.15925557556653e-07!GO:0006915;apoptosis;1.18752811818117e-07!GO:0016881;acid-amino acid ligase activity;1.73716586644058e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.03749634976713e-07!GO:0044432;endoplasmic reticulum part;2.14079859439094e-07!GO:0031982;vesicle;2.46776236940627e-07!GO:0031988;membrane-bound vesicle;3.23331661390912e-07!GO:0007264;small GTPase mediated signal transduction;3.65892170387249e-07!GO:0003713;transcription coactivator activity;3.65945039264621e-07!GO:0019899;enzyme binding;3.66207575271593e-07!GO:0031410;cytoplasmic vesicle;4.20897112289286e-07!GO:0005525;GTP binding;4.20897112289286e-07!GO:0016023;cytoplasmic membrane-bound vesicle;4.61445369670056e-07!GO:0006099;tricarboxylic acid cycle;5.12694676579583e-07!GO:0046356;acetyl-CoA catabolic process;5.12694676579583e-07!GO:0006606;protein import into nucleus;5.14499221666121e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.50486182661125e-07!GO:0032559;adenyl ribonucleotide binding;5.68226590447881e-07!GO:0005768;endosome;5.94660188551006e-07!GO:0051170;nuclear import;6.27660887978855e-07!GO:0005524;ATP binding;7.62778267820238e-07!GO:0030554;adenyl nucleotide binding;8.91125792999719e-07!GO:0016310;phosphorylation;1.05828944314287e-06!GO:0015980;energy derivation by oxidation of organic compounds;1.08823209047427e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.14521910991195e-06!GO:0045892;negative regulation of transcription, DNA-dependent;1.64448108262877e-06!GO:0016563;transcription activator activity;1.77989599123602e-06!GO:0044453;nuclear membrane part;1.84031597473534e-06!GO:0009109;coenzyme catabolic process;1.88377164704154e-06!GO:0006732;coenzyme metabolic process;1.90676195729601e-06!GO:0048475;coated membrane;2.06206228946841e-06!GO:0030117;membrane coat;2.06206228946841e-06!GO:0031323;regulation of cellular metabolic process;2.20473086884078e-06!GO:0006084;acetyl-CoA metabolic process;2.21468034105512e-06!GO:0016568;chromatin modification;2.89836697426678e-06!GO:0008361;regulation of cell size;2.95528627256444e-06!GO:0016887;ATPase activity;3.10105808792294e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;3.10105808792294e-06!GO:0043566;structure-specific DNA binding;3.73075025629181e-06!GO:0051187;cofactor catabolic process;3.7696050505726e-06!GO:0032561;guanyl ribonucleotide binding;3.79399845661432e-06!GO:0019001;guanyl nucleotide binding;3.79399845661432e-06!GO:0045786;negative regulation of progression through cell cycle;4.20331959155072e-06!GO:0016049;cell growth;4.49386892440359e-06!GO:0030120;vesicle coat;4.92724547257229e-06!GO:0030662;coated vesicle membrane;4.92724547257229e-06!GO:0003779;actin binding;5.44391109188597e-06!GO:0006888;ER to Golgi vesicle-mediated transport;5.46686436060361e-06!GO:0019829;cation-transporting ATPase activity;5.8043946420553e-06!GO:0015986;ATP synthesis coupled proton transport;6.65487912389328e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.65487912389328e-06!GO:0006350;transcription;6.84754370478629e-06!GO:0015078;hydrogen ion transmembrane transporter activity;6.91760477091653e-06!GO:0006323;DNA packaging;7.43015735534489e-06!GO:0042623;ATPase activity, coupled;1.02637432510511e-05!GO:0010468;regulation of gene expression;1.1155173809978e-05!GO:0005798;Golgi-associated vesicle;1.25668863315435e-05!GO:0004386;helicase activity;1.45516193330947e-05!GO:0005643;nuclear pore;1.53642767439929e-05!GO:0008026;ATP-dependent helicase activity;1.6106565225867e-05!GO:0006403;RNA localization;1.80988806126101e-05!GO:0050657;nucleic acid transport;1.92154766930529e-05!GO:0051236;establishment of RNA localization;1.92154766930529e-05!GO:0050658;RNA transport;1.92154766930529e-05!GO:0016044;membrane organization and biogenesis;1.95283896459055e-05!GO:0045259;proton-transporting ATP synthase complex;2.04195702745943e-05!GO:0007010;cytoskeleton organization and biogenesis;2.35075793106067e-05!GO:0009056;catabolic process;2.40360192168434e-05!GO:0051789;response to protein stimulus;2.45536188147784e-05!GO:0006986;response to unfolded protein;2.45536188147784e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.6134678158376e-05!GO:0006091;generation of precursor metabolites and energy;2.6134678158376e-05!GO:0032446;protein modification by small protein conjugation;3.00642818133202e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.20226051019688e-05!GO:0005788;endoplasmic reticulum lumen;3.54322552056674e-05!GO:0000245;spliceosome assembly;3.57189687860771e-05!GO:0044431;Golgi apparatus part;3.67804900289327e-05!GO:0030133;transport vesicle;4.6861086316749e-05!GO:0001558;regulation of cell growth;4.71251868741177e-05!GO:0048471;perinuclear region of cytoplasm;4.86750271742515e-05!GO:0016567;protein ubiquitination;5.03525275711989e-05!GO:0051427;hormone receptor binding;5.06666113961764e-05!GO:0000151;ubiquitin ligase complex;5.292204441448e-05!GO:0009199;ribonucleoside triphosphate metabolic process;5.96515339174111e-05!GO:0005770;late endosome;5.97400171212658e-05!GO:0009142;nucleoside triphosphate biosynthetic process;6.10067950224612e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.10067950224612e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.31518834379528e-05!GO:0004812;aminoacyl-tRNA ligase activity;6.31518834379528e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.31518834379528e-05!GO:0044440;endosomal part;6.70024515963922e-05!GO:0010008;endosome membrane;6.70024515963922e-05!GO:0009141;nucleoside triphosphate metabolic process;7.1686079236073e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.62653877235613e-05!GO:0016197;endosome transport;7.96816763896393e-05!GO:0042254;ribosome biogenesis and assembly;8.83058913639406e-05!GO:0030532;small nuclear ribonucleoprotein complex;9.4393231470767e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.60640834692956e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000101795996709559!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000102596562616146!GO:0009144;purine nucleoside triphosphate metabolic process;0.000102596562616146!GO:0035257;nuclear hormone receptor binding;0.000102596562616146!GO:0005791;rough endoplasmic reticulum;0.000105756944817809!GO:0003697;single-stranded DNA binding;0.000106991882651357!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000108100554529954!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000108100554529954!GO:0006754;ATP biosynthetic process;0.000120442256961518!GO:0006753;nucleoside phosphate metabolic process;0.000120442256961518!GO:0032774;RNA biosynthetic process;0.00012312801024221!GO:0009259;ribonucleotide metabolic process;0.000126373435768515!GO:0006351;transcription, DNA-dependent;0.00012858993969352!GO:0005667;transcription factor complex;0.000128898168187453!GO:0046930;pore complex;0.000131357148533494!GO:0043038;amino acid activation;0.000134644244631833!GO:0006418;tRNA aminoacylation for protein translation;0.000134644244631833!GO:0043039;tRNA aminoacylation;0.000134644244631833!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.00013879954056322!GO:0008286;insulin receptor signaling pathway;0.000141642189749617!GO:0046034;ATP metabolic process;0.00014299767915636!GO:0005773;vacuole;0.000146407995279055!GO:0009150;purine ribonucleotide metabolic process;0.000157506853363639!GO:0006613;cotranslational protein targeting to membrane;0.000161158408297343!GO:0006163;purine nucleotide metabolic process;0.000167548783528915!GO:0065002;intracellular protein transport across a membrane;0.000168940885927768!GO:0005789;endoplasmic reticulum membrane;0.000190443640365951!GO:0030027;lamellipodium;0.000196757579992636!GO:0003690;double-stranded DNA binding;0.000217709991747225!GO:0003724;RNA helicase activity;0.000225964465092416!GO:0006916;anti-apoptosis;0.000234469010146858!GO:0016491;oxidoreductase activity;0.000243938063000749!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000246152403551914!GO:0051028;mRNA transport;0.000247699171008742!GO:0042802;identical protein binding;0.000269804234283055!GO:0005839;proteasome core complex (sensu Eukaryota);0.000283718132882407!GO:0051276;chromosome organization and biogenesis;0.000298985722658715!GO:0043069;negative regulation of programmed cell death;0.000301615313477217!GO:0045449;regulation of transcription;0.000335782754453512!GO:0009152;purine ribonucleotide biosynthetic process;0.000345575569863069!GO:0005769;early endosome;0.000358066547708795!GO:0001726;ruffle;0.000361269926644455!GO:0007049;cell cycle;0.000369083253307934!GO:0006164;purine nucleotide biosynthetic process;0.00037107370759801!GO:0006402;mRNA catabolic process;0.000387580542459036!GO:0009260;ribonucleotide biosynthetic process;0.000401103250356356!GO:0007243;protein kinase cascade;0.000410111134981712!GO:0019843;rRNA binding;0.00045595852717791!GO:0007265;Ras protein signal transduction;0.00045595852717791!GO:0045893;positive regulation of transcription, DNA-dependent;0.000459826956606337!GO:0043066;negative regulation of apoptosis;0.000461990063596689!GO:0000323;lytic vacuole;0.000518081557163514!GO:0005764;lysosome;0.000518081557163514!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000552094598257845!GO:0048522;positive regulation of cellular process;0.000592806961878929!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000592806961878929!GO:0003702;RNA polymerase II transcription factor activity;0.000638502739851103!GO:0005741;mitochondrial outer membrane;0.000643437730955816!GO:0043623;cellular protein complex assembly;0.000643437730955816!GO:0051287;NAD binding;0.000651855262143275!GO:0035258;steroid hormone receptor binding;0.000718611871448858!GO:0006897;endocytosis;0.000738171765319794!GO:0010324;membrane invagination;0.000738171765319794!GO:0030518;steroid hormone receptor signaling pathway;0.000739853919850953!GO:0042981;regulation of apoptosis;0.000749163953932207!GO:0006974;response to DNA damage stimulus;0.000754007533869788!GO:0043067;regulation of programmed cell death;0.000775364512944851!GO:0051128;regulation of cellular component organization and biogenesis;0.000782199472897979!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000877900632601015!GO:0016859;cis-trans isomerase activity;0.000946361077353831!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000967371862475292!GO:0030867;rough endoplasmic reticulum membrane;0.000967371862475292!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000981244668092101!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00101083321940031!GO:0000074;regulation of progression through cell cycle;0.00101345193909395!GO:0051726;regulation of cell cycle;0.00104837492816941!GO:0051188;cofactor biosynthetic process;0.00107653055230967!GO:0031968;organelle outer membrane;0.00112040982645038!GO:0008287;protein serine/threonine phosphatase complex;0.00116715615058953!GO:0004298;threonine endopeptidase activity;0.00119730613320004!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00125268157826391!GO:0006355;regulation of transcription, DNA-dependent;0.0013598265076044!GO:0015631;tubulin binding;0.00138626964552597!GO:0007242;intracellular signaling cascade;0.00139294973032671!GO:0019867;outer membrane;0.00149072044370897!GO:0043021;ribonucleoprotein binding;0.00154342738344547!GO:0040008;regulation of growth;0.00154436106782399!GO:0031072;heat shock protein binding;0.00158075258426969!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00166424439716689!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00166424439716689!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00166424439716689!GO:0000139;Golgi membrane;0.0018786851587539!GO:0045941;positive regulation of transcription;0.00194408837713475!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00198819667825968!GO:0009719;response to endogenous stimulus;0.00198819667825968!GO:0008154;actin polymerization and/or depolymerization;0.00199672080855007!GO:0006612;protein targeting to membrane;0.00206033477329559!GO:0005083;small GTPase regulator activity;0.00228423066151942!GO:0008270;zinc ion binding;0.00232887093076014!GO:0006891;intra-Golgi vesicle-mediated transport;0.00233297410612415!GO:0006892;post-Golgi vesicle-mediated transport;0.00238487637886056!GO:0005813;centrosome;0.00242302051584625!GO:0043488;regulation of mRNA stability;0.00243654736464551!GO:0043487;regulation of RNA stability;0.00243654736464551!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0024922323535261!GO:0044420;extracellular matrix part;0.00251783199636598!GO:0048518;positive regulation of biological process;0.00251783199636598!GO:0009966;regulation of signal transduction;0.00251783199636598!GO:0046914;transition metal ion binding;0.00262348835353654!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00262348835353654!GO:0005885;Arp2/3 protein complex;0.00275761776382929!GO:0015629;actin cytoskeleton;0.00280995934155961!GO:0006399;tRNA metabolic process;0.00285102463918897!GO:0005905;coated pit;0.00299727468497997!GO:0033673;negative regulation of kinase activity;0.00305949166836243!GO:0006469;negative regulation of protein kinase activity;0.00305949166836243!GO:0045045;secretory pathway;0.00318516809136315!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00325788364847129!GO:0001516;prostaglandin biosynthetic process;0.00327796805815472!GO:0046457;prostanoid biosynthetic process;0.00327796805815472!GO:0005762;mitochondrial large ribosomal subunit;0.00331613138036817!GO:0000315;organellar large ribosomal subunit;0.00331613138036817!GO:0006607;NLS-bearing substrate import into nucleus;0.00367713768988033!GO:0030041;actin filament polymerization;0.00368092244107992!GO:0017166;vinculin binding;0.0037299053838666!GO:0051252;regulation of RNA metabolic process;0.00373355355556007!GO:0008186;RNA-dependent ATPase activity;0.00374455530907713!GO:0008654;phospholipid biosynthetic process;0.00380736378426069!GO:0005912;adherens junction;0.00386834245809525!GO:0045098;type III intermediate filament;0.00387633444509554!GO:0005581;collagen;0.00391541924706644!GO:0030663;COPI coated vesicle membrane;0.00394547728498688!GO:0030126;COPI vesicle coat;0.00394547728498688!GO:0030522;intracellular receptor-mediated signaling pathway;0.00410797652315762!GO:0000314;organellar small ribosomal subunit;0.00418120288529888!GO:0005763;mitochondrial small ribosomal subunit;0.00418120288529888!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00429197039516944!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00429197039516944!GO:0003729;mRNA binding;0.00458420908130261!GO:0045792;negative regulation of cell size;0.00478436308664165!GO:0009108;coenzyme biosynthetic process;0.00478436308664165!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00478581863154754!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00478851344245868!GO:0015630;microtubule cytoskeleton;0.00478851344245868!GO:0006693;prostaglandin metabolic process;0.00482540360043357!GO:0006692;prostanoid metabolic process;0.00482540360043357!GO:0051087;chaperone binding;0.00491801871651265!GO:0006979;response to oxidative stress;0.00525328625931076!GO:0030695;GTPase regulator activity;0.00529168496930046!GO:0005048;signal sequence binding;0.00529168496930046!GO:0030308;negative regulation of cell growth;0.00543022825181722!GO:0005815;microtubule organizing center;0.00572475125164724!GO:0005100;Rho GTPase activator activity;0.00578522840444522!GO:0006414;translational elongation;0.00578522840444522!GO:0051348;negative regulation of transferase activity;0.00578522840444522!GO:0051920;peroxiredoxin activity;0.00589271211617578!GO:0006950;response to stress;0.00592734778672172!GO:0006364;rRNA processing;0.00615802492455743!GO:0051168;nuclear export;0.00629818292938561!GO:0008250;oligosaccharyl transferase complex;0.00631627050009188!GO:0031589;cell-substrate adhesion;0.00652385063299429!GO:0019904;protein domain specific binding;0.00652939476239797!GO:0031901;early endosome membrane;0.00654894793661841!GO:0016853;isomerase activity;0.00671159731614149!GO:0030118;clathrin coat;0.00685752024155959!GO:0006401;RNA catabolic process;0.00685752024155959!GO:0005096;GTPase activator activity;0.0069696824162173!GO:0030241;muscle thick filament assembly;0.0069696824162173!GO:0031034;myosin filament assembly;0.0069696824162173!GO:0031033;myosin filament assembly or disassembly;0.0069696824162173!GO:0048739;cardiac muscle fiber development;0.0069696824162173!GO:0030137;COPI-coated vesicle;0.00705962277171574!GO:0033116;ER-Golgi intermediate compartment membrane;0.00705962277171574!GO:0008139;nuclear localization sequence binding;0.0075490568211634!GO:0016363;nuclear matrix;0.00768675380411841!GO:0030132;clathrin coat of coated pit;0.00774404526417734!GO:0048500;signal recognition particle;0.00783118259088214!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00787905699914475!GO:0015002;heme-copper terminal oxidase activity;0.00787905699914475!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00787905699914475!GO:0004129;cytochrome-c oxidase activity;0.00787905699914475!GO:0016072;rRNA metabolic process;0.00829359109608353!GO:0004674;protein serine/threonine kinase activity;0.00838067642739315!GO:0007005;mitochondrion organization and biogenesis;0.00861996910785327!GO:0005869;dynactin complex;0.00887118867386242!GO:0000059;protein import into nucleus, docking;0.00906699317465129!GO:0006333;chromatin assembly or disassembly;0.00913199641047832!GO:0030521;androgen receptor signaling pathway;0.00928232646917216!GO:0008047;enzyme activator activity;0.00932598378898637!GO:0004004;ATP-dependent RNA helicase activity;0.00939569567585677!GO:0006281;DNA repair;0.00994338808065057!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0100152715949962!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0103818138478398!GO:0006752;group transfer coenzyme metabolic process;0.0107130393376587!GO:0030134;ER to Golgi transport vesicle;0.010967424459885!GO:0030100;regulation of endocytosis;0.0111501533952587!GO:0022890;inorganic cation transmembrane transporter activity;0.0112909120955821!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0114733887394836!GO:0007160;cell-matrix adhesion;0.0115416631762542!GO:0030658;transport vesicle membrane;0.0115770727284378!GO:0050811;GABA receptor binding;0.0116950431420276!GO:0043284;biopolymer biosynthetic process;0.0123350441029072!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0125246461748682!GO:0003746;translation elongation factor activity;0.0126764595319889!GO:0051270;regulation of cell motility;0.0131272727438003!GO:0045454;cell redox homeostasis;0.0137636848073096!GO:0001725;stress fiber;0.0141313940160763!GO:0032432;actin filament bundle;0.0141313940160763!GO:0004576;oligosaccharyl transferase activity;0.0146564322186557!GO:0008601;protein phosphatase type 2A regulator activity;0.0152867824884435!GO:0031902;late endosome membrane;0.015329251830094!GO:0032940;secretion by cell;0.0156220394585551!GO:0008017;microtubule binding;0.0158411215445277!GO:0048487;beta-tubulin binding;0.0159362239213305!GO:0007266;Rho protein signal transduction;0.0162995521853013!GO:0043681;protein import into mitochondrion;0.0167851004038396!GO:0030127;COPII vesicle coat;0.0173388789053288!GO:0012507;ER to Golgi transport vesicle membrane;0.0173388789053288!GO:0007517;muscle development;0.0180195082464813!GO:0043034;costamere;0.018028963199655!GO:0000159;protein phosphatase type 2A complex;0.0180493602385294!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0181712953944404!GO:0045047;protein targeting to ER;0.0181712953944404!GO:0051540;metal cluster binding;0.0189720180487651!GO:0051536;iron-sulfur cluster binding;0.0189720180487651!GO:0004722;protein serine/threonine phosphatase activity;0.0190303836415768!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0194494661400132!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0194494661400132!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0195473177805566!GO:0065004;protein-DNA complex assembly;0.0211318006050086!GO:0016787;hydrolase activity;0.0212002970809743!GO:0065009;regulation of a molecular function;0.0212002970809743!GO:0000209;protein polyubiquitination;0.0218815681428574!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.022002777112143!GO:0015399;primary active transmembrane transporter activity;0.022002777112143!GO:0012506;vesicle membrane;0.0227137346808725!GO:0030119;AP-type membrane coat adaptor complex;0.022780842156813!GO:0009117;nucleotide metabolic process;0.0231525353395517!GO:0000118;histone deacetylase complex;0.0239145716274943!GO:0008312;7S RNA binding;0.0242421234284784!GO:0000902;cell morphogenesis;0.0250531045896743!GO:0032989;cellular structure morphogenesis;0.0250531045896743!GO:0006650;glycerophospholipid metabolic process;0.0254438839777322!GO:0007050;cell cycle arrest;0.0254516816616685!GO:0030659;cytoplasmic vesicle membrane;0.0257540811405585!GO:0006376;mRNA splice site selection;0.0258791946535269!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0258791946535269!GO:0022402;cell cycle process;0.0259476841846473!GO:0003711;transcription elongation regulator activity;0.0260224114581177!GO:0045926;negative regulation of growth;0.0260224114581177!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0260596352274383!GO:0043414;biopolymer methylation;0.0266842857528457!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0268199156935386!GO:0030836;positive regulation of actin filament depolymerization;0.0269057942293106!GO:0030660;Golgi-associated vesicle membrane;0.026986350152045!GO:0031625;ubiquitin protein ligase binding;0.0270367700047761!GO:0016301;kinase activity;0.0273304181925819!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0273304181925819!GO:0046983;protein dimerization activity;0.0281835815621996!GO:0051539;4 iron, 4 sulfur cluster binding;0.0284749365852115!GO:0016791;phosphoric monoester hydrolase activity;0.0288455491869583!GO:0030320;cellular monovalent inorganic anion homeostasis;0.029231085656425!GO:0055083;monovalent inorganic anion homeostasis;0.029231085656425!GO:0055064;chloride ion homeostasis;0.029231085656425!GO:0030644;cellular chloride ion homeostasis;0.029231085656425!GO:0031349;positive regulation of defense response;0.0294772854771333!GO:0050729;positive regulation of inflammatory response;0.0294772854771333!GO:0051101;regulation of DNA binding;0.0294772854771333!GO:0008234;cysteine-type peptidase activity;0.0295611171492436!GO:0008147;structural constituent of bone;0.0301143037718588!GO:0007030;Golgi organization and biogenesis;0.0302570325884615!GO:0030145;manganese ion binding;0.0303214019344973!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0305247352290435!GO:0033043;regulation of organelle organization and biogenesis;0.0305247352290435!GO:0016584;nucleosome positioning;0.0308785360790053!GO:0035035;histone acetyltransferase binding;0.0310494844221445!GO:0005868;cytoplasmic dynein complex;0.0336077170045197!GO:0005099;Ras GTPase activator activity;0.0336634907167722!GO:0048468;cell development;0.0345942344551942!GO:0019783;small conjugating protein-specific protease activity;0.0352285797728569!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0353472327800179!GO:0030131;clathrin adaptor complex;0.0368718214262815!GO:0016740;transferase activity;0.0369515947439477!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0370128656863477!GO:0005159;insulin-like growth factor receptor binding;0.0380012115727802!GO:0043407;negative regulation of MAP kinase activity;0.0380265485477069!GO:0004843;ubiquitin-specific protease activity;0.0380748059996049!GO:0006417;regulation of translation;0.0387531828458058!GO:0046474;glycerophospholipid biosynthetic process;0.0389426013399508!GO:0018196;peptidyl-asparagine modification;0.0389786459912828!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0389786459912828!GO:0006383;transcription from RNA polymerase III promoter;0.0389786459912828!GO:0005637;nuclear inner membrane;0.0390376495969933!GO:0008180;signalosome;0.0396440085168709!GO:0016779;nucleotidyltransferase activity;0.0399675174325273!GO:0050681;androgen receptor binding;0.0408439845592897!GO:0032259;methylation;0.0417717220950523!GO:0006595;polyamine metabolic process;0.0418137868854154!GO:0050662;coenzyme binding;0.0423723069497947!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0424189586241207!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0424189586241207!GO:0004784;superoxide dismutase activity;0.0424189586241207!GO:0030384;phosphoinositide metabolic process;0.0425175590919466!GO:0003899;DNA-directed RNA polymerase activity;0.0425175590919466!GO:0044433;cytoplasmic vesicle part;0.0428467465400315!GO:0004221;ubiquitin thiolesterase activity;0.0434031857739401!GO:0016311;dephosphorylation;0.0434031857739401!GO:0030140;trans-Golgi network transport vesicle;0.0436394779394608!GO:0040011;locomotion;0.0438539881678381!GO:0040012;regulation of locomotion;0.0439030552675863!GO:0001666;response to hypoxia;0.0441446136486389!GO:0014706;striated muscle development;0.0444144070431621!GO:0006260;DNA replication;0.0447747687531849!GO:0008097;5S rRNA binding;0.0457914648467361!GO:0043492;ATPase activity, coupled to movement of substances;0.0461272735492559!GO:0051271;negative regulation of cell motility;0.0461925225830868!GO:0030833;regulation of actin filament polymerization;0.0468285242444385!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.046973109555045!GO:0007167;enzyme linked receptor protein signaling pathway;0.0481393083672607!GO:0043022;ribosome binding;0.0486929760402723!GO:0003682;chromatin binding;0.0486929760402723!GO:0051098;regulation of binding;0.0487196372934364!GO:0004721;phosphoprotein phosphatase activity;0.0487196372934364 | |||
|sample_id=10048 | |||
|sample_note= | |||
|sample_sex=male | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=smooth muscle | |||
|top_motifs=SRF:3.96748180459;PRDM1:2.88054003123;GATA4:2.79196278386;MYBL2:2.7458588052;NR3C1:2.62701091879;FOX{I1,J2}:2.13306114523;NFATC1..3:2.0052619061;TFAP4:1.93796617293;TFAP2{A,C}:1.83190381065;NR1H4:1.80933299991;HMX1:1.7322495025;FOXO1,3,4:1.71968613203;GFI1B:1.64517388709;KLF4:1.61544210889;HIC1:1.55900554092;MAZ:1.55557417013;POU3F1..4:1.51909172006;TEF:1.49079428471;MZF1:1.4651681361;TFAP2B:1.38100133831;FOX{D1,D2}:1.37568562838;MYFfamily:1.3624163386;MEF2{A,B,C,D}:1.35796138427;IKZF2:1.33389150129;GTF2I:1.31562470882;GTF2A1,2:1.31303198832;MTE{core}:1.27039926984;CDX1,2,4:1.26862214309;PATZ1:1.24984829346;IKZF1:1.17216177003;MED-1{core}:1.15551151324;BREu{core}:1.155507448;TLX1..3_NFIC{dimer}:1.14292134318;EGR1..3:1.14167155153;PAX5:1.13090924885;HMGA1,2:1.09541523775;UFEwm:1.07198533087;POU6F1:1.06905224892;HBP1_HMGB_SSRP1_UBTF:1.0428530412;HSF1,2:1.04010088132;ZNF238:1.00069938842;GCM1,2:0.975891329857;XBP1:0.973018800708;CDC5L:0.966344249655;TBP:0.951083113357;SMAD1..7,9:0.945260471731;AR:0.944313818587;FOXM1:0.943944012476;RREB1:0.916224569692;NHLH1,2:0.907764517408;TLX2:0.904437755219;SP1:0.902103720921;EP300:0.898322204869;SPZ1:0.879439754751;RBPJ:0.874805644193;ZBTB16:0.873315523452;TFCP2:0.86674953501;RXR{A,B,G}:0.845530397171;TEAD1:0.845023388969;ZNF384:0.843378855843;NKX2-2,8:0.842315189065;SOX5:0.831641838883;STAT1,3:0.828788009561;FOXP1:0.813016411773;TOPORS:0.810969393469;PITX1..3:0.792598379322;ZIC1..3:0.72617873897;BPTF:0.649719915452;ZFP161:0.641566764182;MTF1:0.62500520637;ALX1:0.604456230556;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.602033179219;XCPE1{core}:0.578984154853;GLI1..3:0.574785205677;NR6A1:0.533153489345;TGIF1:0.5239446203;GZF1:0.521160441098;POU1F1:0.500486745511;PAX6:0.497648876398;PAX1,9:0.490518896592;T:0.483083979255;FOXQ1:0.469378018793;ARID5B:0.464625537971;FOXL1:0.444904688713;STAT2,4,6:0.402031655767;EVI1:0.344528945439;IRF7:0.341767934599;HAND1,2:0.333596836325;AIRE:0.321864303;AHR_ARNT_ARNT2:0.313457961267;ATF4:0.311060615735;NKX2-1,4:0.30560494414;REST:0.286217465603;DBP:0.281579540957;PAX3,7:0.252312124152;RFX2..5_RFXANK_RFXAP:0.217044547385;MAFB:0.196912095396;NR5A1,2:0.194143701884;GATA6:0.151980665052;IRF1,2:0.129179122333;ZBTB6:0.119596335892;VSX1,2:0.112006119226;HOX{A4,D4}:0.0987638959218;ATF2:0.0585996896941;NFIX:0.0517878865864;ESRRA:0.0507592980393;FOX{F1,F2,J1}:0.0267930293796;TBX4,5:0.0188569223944;SPIB:-0.012131457884;SREBF1,2:-0.0297903840992;ZNF148:-0.0370023881281;JUN:-0.0379369498938;EBF1:-0.0568397862137;RORA:-0.0682901319071;NFIL3:-0.0843330736707;SOX17:-0.103185458008;RXRA_VDR{dimer}:-0.11018577574;NKX3-2:-0.127281893598;ZNF143:-0.133561829728;NKX6-1,2:-0.138392858462;FOXA2:-0.141904540575;SOX2:-0.142544376457;HES1:-0.149232533534;HOXA9_MEIS1:-0.152099591285;FOXD3:-0.159190608356;ETS1,2:-0.187711940621;MYOD1:-0.196072585792;SNAI1..3:-0.201284149629;ALX4:-0.210699970785;ONECUT1,2:-0.211179717831;NFE2L1:-0.215766125058;CREB1:-0.219499663352;HNF1A:-0.223760961956;ATF6:-0.24308080707;LHX3,4:-0.260538297178;ZNF423:-0.282237916046;TP53:-0.282889170789;CRX:-0.282935784359;HNF4A_NR2F1,2:-0.306229455339;SPI1:-0.314963076564;NKX2-3_NKX2-5:-0.324616310979;HOX{A6,A7,B6,B7}:-0.344063637314;NRF1:-0.345287923185;ESR1:-0.349000189959;FOXN1:-0.375731025048;NANOG:-0.379854299434;FOXP3:-0.408182166571;NFE2:-0.409640389813;PRRX1,2:-0.432591992779;HLF:-0.434349417453;CEBPA,B_DDIT3:-0.434844364675;FOSL2:-0.468384463619;ADNP_IRX_SIX_ZHX:-0.473214673618;HOX{A5,B5}:-0.495558384108;ATF5_CREB3:-0.498291158876;PBX1:-0.507881710072;RFX1:-0.510599259055;POU5F1:-0.513266480172;NFKB1_REL_RELA:-0.548424817968;NFE2L2:-0.550526247839;RUNX1..3:-0.563041278808;PPARG:-0.624773059734;CUX2:-0.637122997891;BACH2:-0.673322240449;LMO2:-0.695135200152;ZEB1:-0.698530413108;LEF1_TCF7_TCF7L1,2:-0.717800109618;FOS_FOS{B,L1}_JUN{B,D}:-0.718185901246;ELF1,2,4:-0.769283530525;GFI1:-0.776365177871;TFDP1:-0.821545290201;YY1:-0.82270047922;TAL1_TCF{3,4,12}:-0.921438666389;NFY{A,B,C}:-0.926348912367;bHLH_family:-0.934784395337;PAX8:-0.976906003477;NKX3-1:-0.981771846117;E2F1..5:-1.01677979608;OCT4_SOX2{dimer}:-1.06583538218;SOX{8,9,10}:-1.06793832791;POU2F1..3:-1.1247787216;PAX2:-1.17644378849;PDX1:-1.18384939987;DMAP1_NCOR{1,2}_SMARC:-1.25254811665;ELK1,4_GABP{A,B1}:-1.2614807442;EN1,2:-1.27653911382;NANOG{mouse}:-1.3368898592;PAX4:-1.44489544555;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.63364182459;MYB:-1.6912462526;HIF1A:-1.76156992926;STAT5{A,B}:-2.07996593562 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10048-101G3;search_select_hide=table117:FF:10048-101G3 | |||
}} | }} |
Latest revision as of 12:17, 3 June 2020
Name: | smooth muscle, adult, pool1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11755 |
Sample type: | tissues |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11755
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11755
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0479 |
10 | 10 | 0.234 |
100 | 100 | 0.115 |
101 | 101 | 0.434 |
102 | 102 | 0.221 |
103 | 103 | 0.0556 |
104 | 104 | 0.459 |
105 | 105 | 0.586 |
106 | 106 | 0.403 |
107 | 107 | 0.334 |
108 | 108 | 0.861 |
109 | 109 | 0.00398 |
11 | 11 | 0.0572 |
110 | 110 | 0.16 |
111 | 111 | 0.0742 |
112 | 112 | 0.67 |
113 | 113 | 0.196 |
114 | 114 | 0.0624 |
115 | 115 | 0.322 |
116 | 116 | 0.128 |
117 | 117 | 0.0138 |
118 | 118 | 0.0596 |
119 | 119 | 0.714 |
12 | 12 | 0.227 |
120 | 120 | 0.0666 |
121 | 121 | 0.253 |
122 | 122 | 0.0847 |
123 | 123 | 0.923 |
124 | 124 | 0.654 |
125 | 125 | 0.528 |
126 | 126 | 0.734 |
127 | 127 | 0.528 |
128 | 128 | 0.464 |
129 | 129 | 0.499 |
13 | 13 | 0.059 |
130 | 130 | 0.738 |
131 | 131 | 0.322 |
132 | 132 | 0.0355 |
133 | 133 | 0.166 |
134 | 134 | 0.253 |
135 | 135 | 0.135 |
136 | 136 | 0.263 |
137 | 137 | 0.556 |
138 | 138 | 0.986 |
139 | 139 | 0.869 |
14 | 14 | 0.896 |
140 | 140 | 0.913 |
141 | 141 | 0.794 |
142 | 142 | 0.965 |
143 | 143 | 0.00356 |
144 | 144 | 0.325 |
145 | 145 | 0.783 |
146 | 146 | 0.379 |
147 | 147 | 0.491 |
148 | 148 | 0.397 |
149 | 149 | 0.21 |
15 | 15 | 0.0145 |
150 | 150 | 0.394 |
151 | 151 | 0.773 |
152 | 152 | 0.218 |
153 | 153 | 0.0824 |
154 | 154 | 0.872 |
155 | 155 | 0.486 |
156 | 156 | 0.246 |
157 | 157 | 0.676 |
158 | 158 | 0.606 |
159 | 159 | 0.625 |
16 | 16 | 0.16 |
160 | 160 | 0.751 |
161 | 161 | 0.508 |
162 | 162 | 0.589 |
163 | 163 | 0.39 |
164 | 164 | 0.11 |
165 | 165 | 0.46 |
166 | 166 | 0.0817 |
167 | 167 | 0.231 |
168 | 168 | 0.948 |
169 | 169 | 0.392 |
17 | 17 | 0.449 |
18 | 18 | 0.0691 |
19 | 19 | 0.265 |
2 | 2 | 0.0603 |
20 | 20 | 0.0808 |
21 | 21 | 0.538 |
22 | 22 | 0.881 |
23 | 23 | 0.734 |
24 | 24 | 0.117 |
25 | 25 | 0.16 |
26 | 26 | 0.0678 |
27 | 27 | 0.765 |
28 | 28 | 0.479 |
29 | 29 | 0.00156 |
3 | 3 | 0.321 |
30 | 30 | 0.148 |
31 | 31 | 0.996 |
32 | 32 | 0.489 |
33 | 33 | 0.117 |
34 | 34 | 0.533 |
35 | 35 | 0.375 |
36 | 36 | 0.00846 |
37 | 37 | 0.13 |
38 | 38 | 0.503 |
39 | 39 | 0.405 |
4 | 4 | 0.127 |
40 | 40 | 0.00904 |
41 | 41 | 0.0199 |
42 | 42 | 0.253 |
43 | 43 | 0.274 |
44 | 44 | 0.967 |
45 | 45 | 0.492 |
46 | 46 | 0.19 |
47 | 47 | 0.059 |
48 | 48 | 0.171 |
49 | 49 | 0.378 |
5 | 5 | 0.682 |
50 | 50 | 0.798 |
51 | 51 | 0.553 |
52 | 52 | 0.31 |
53 | 53 | 0.709 |
54 | 54 | 0.996 |
55 | 55 | 0.77 |
56 | 56 | 0.659 |
57 | 57 | 0.476 |
58 | 58 | 0.58 |
59 | 59 | 0.464 |
6 | 6 | 0.639 |
60 | 60 | 0.856 |
61 | 61 | 0.286 |
62 | 62 | 0.389 |
63 | 63 | 0.409 |
64 | 64 | 0.177 |
65 | 65 | 0.782 |
66 | 66 | 0.00135 |
67 | 67 | 0.838 |
68 | 68 | 0.121 |
69 | 69 | 0.743 |
7 | 7 | 0.123 |
70 | 70 | 0.572 |
71 | 71 | 0.0475 |
72 | 72 | 0.621 |
73 | 73 | 0.0389 |
74 | 74 | 0.447 |
75 | 75 | 0.0208 |
76 | 76 | 0.189 |
77 | 77 | 0.433 |
78 | 78 | 0.102 |
79 | 79 | 0.333 |
8 | 8 | 0.191 |
80 | 80 | 0.0495 |
81 | 81 | 0.369 |
82 | 82 | 0.886 |
83 | 83 | 0.896 |
84 | 84 | 0.874 |
85 | 85 | 0.534 |
86 | 86 | 0.831 |
87 | 87 | 1.03148e-4 |
88 | 88 | 0.91 |
89 | 89 | 0.628 |
9 | 9 | 0.805 |
90 | 90 | 0.202 |
91 | 91 | 0.0499 |
92 | 92 | 0.57 |
93 | 93 | 0.013 |
94 | 94 | 0.0594 |
95 | 95 | 5.65349e-5 |
96 | 96 | 0.491 |
97 | 97 | 0.86 |
98 | 98 | 0.492 |
99 | 99 | 0.307 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11755
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001135 (smooth muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010048 (human smooth muscle - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)