FF:10046-101G1: Difference between revisions

Latest revision as of 12:17, 3 June 2020

Name:	heart, fetal, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10653,RDhi10058
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	heart
dev stage	12-31 weeks fetus
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	9041413A
catalog number	Cat:636583
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00013693

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10653		CAGE		DRX008666		DRR009538
RDhi10058		RNA-Seq		DRX012359		DRR013807

Accession ID Hg19

Library id		BAM		CTSS
CNhs10653		DRZ000963		DRZ002348
RDhi10058		DRZ003008

Accession ID Hg38

Library id		BAM		CTSS
CNhs10653		DRZ012313		DRZ013698
RDhi10058

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0282
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0557
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0282
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0.0282
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.394
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0282
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0282
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.498
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0282
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.227
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.283
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0282
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0.498
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0282
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0199
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0797
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0.633
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0429
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0.0282
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.13
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.0282
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.273
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0548
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.263
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0282
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.136
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0468
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.126
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.0282
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0282
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0713
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.0548
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0548
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.228
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0548
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.126
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.0282
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.167
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.177
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.126
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0282
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.288
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0.0282
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0.0282
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.0282
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0.895
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0548
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.167
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0282
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0282
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0.126
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10653

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	4.14702e-4
MA0003.1	MA0003.1	0.956
MA0004.1	MA0004.1	0.0632
MA0006.1	MA0006.1	0.861
MA0007.1	MA0007.1	0.57
MA0009.1	MA0009.1	0.373
MA0014.1	MA0014.1	0.678
MA0017.1	MA0017.1	0.211
MA0018.2	MA0018.2	0.233
MA0019.1	MA0019.1	0.262
MA0024.1	MA0024.1	0.758
MA0025.1	MA0025.1	0.882
MA0027.1	MA0027.1	0.848
MA0028.1	MA0028.1	4.96826e-4
MA0029.1	MA0029.1	0.05
MA0030.1	MA0030.1	0.433
MA0031.1	MA0031.1	0.47
MA0035.2	MA0035.2	2.08313e-5
MA0038.1	MA0038.1	0.344
MA0039.2	MA0039.2	0.619
MA0040.1	MA0040.1	0.773
MA0041.1	MA0041.1	0.139
MA0042.1	MA0042.1	0.3
MA0043.1	MA0043.1	0.669
MA0046.1	MA0046.1	0.346
MA0047.2	MA0047.2	0.42
MA0048.1	MA0048.1	0.201
MA0050.1	MA0050.1	0.00169
MA0051.1	MA0051.1	0.0132
MA0052.1	MA0052.1	6.354e-50
MA0055.1	MA0055.1	0.038
MA0057.1	MA0057.1	0.768
MA0058.1	MA0058.1	0.0383
MA0059.1	MA0059.1	0.00119
MA0060.1	MA0060.1	0.219
MA0061.1	MA0061.1	9.09014e-4
MA0062.2	MA0062.2	6.21372e-7
MA0065.2	MA0065.2	0.0144
MA0066.1	MA0066.1	0.336
MA0067.1	MA0067.1	0.836
MA0068.1	MA0068.1	0.00351
MA0069.1	MA0069.1	0.741
MA0070.1	MA0070.1	0.156
MA0071.1	MA0071.1	0.755
MA0072.1	MA0072.1	0.702
MA0073.1	MA0073.1	0.598
MA0074.1	MA0074.1	0.662
MA0076.1	MA0076.1	2.64449e-4
MA0077.1	MA0077.1	0.432
MA0078.1	MA0078.1	0.387
MA0079.2	MA0079.2	0.26
MA0080.2	MA0080.2	8.59382e-5
MA0081.1	MA0081.1	0.103
MA0083.1	MA0083.1	1.03937e-6
MA0084.1	MA0084.1	0.614
MA0087.1	MA0087.1	0.338
MA0088.1	MA0088.1	0.0416
MA0090.1	MA0090.1	0.00421
MA0091.1	MA0091.1	0.851
MA0092.1	MA0092.1	0.979
MA0093.1	MA0093.1	0.0651
MA0099.2	MA0099.2	5.30907e-16
MA0100.1	MA0100.1	0.861
MA0101.1	MA0101.1	0.0283
MA0102.2	MA0102.2	0.137
MA0103.1	MA0103.1	0.00727
MA0104.2	MA0104.2	0.00669
MA0105.1	MA0105.1	3.85394e-7
MA0106.1	MA0106.1	0.0333
MA0107.1	MA0107.1	0.0205
MA0108.2	MA0108.2	2.3507e-21
MA0111.1	MA0111.1	0.897
MA0112.2	MA0112.2	0.0261
MA0113.1	MA0113.1	0.248
MA0114.1	MA0114.1	0.0653
MA0115.1	MA0115.1	0.659
MA0116.1	MA0116.1	3.43892e-4
MA0117.1	MA0117.1	0.815
MA0119.1	MA0119.1	0.791
MA0122.1	MA0122.1	0.0599
MA0124.1	MA0124.1	0.339
MA0125.1	MA0125.1	0.609
MA0131.1	MA0131.1	0.801
MA0135.1	MA0135.1	0.439
MA0136.1	MA0136.1	1.4859e-7
MA0137.2	MA0137.2	0.616
MA0138.2	MA0138.2	0.381
MA0139.1	MA0139.1	0.0476
MA0140.1	MA0140.1	0.00106
MA0141.1	MA0141.1	0.321
MA0142.1	MA0142.1	0.0112
MA0143.1	MA0143.1	0.0799
MA0144.1	MA0144.1	0.514
MA0145.1	MA0145.1	0.808
MA0146.1	MA0146.1	0.0497
MA0147.1	MA0147.1	0.00211
MA0148.1	MA0148.1	0.928
MA0149.1	MA0149.1	0.0378
MA0150.1	MA0150.1	2.31484e-5
MA0152.1	MA0152.1	0.417
MA0153.1	MA0153.1	0.503
MA0154.1	MA0154.1	0.0748
MA0155.1	MA0155.1	0.791
MA0156.1	MA0156.1	1.67061e-5
MA0157.1	MA0157.1	0.645
MA0159.1	MA0159.1	0.36
MA0160.1	MA0160.1	0.445
MA0162.1	MA0162.1	0.268
MA0163.1	MA0163.1	1.00365e-9
MA0164.1	MA0164.1	0.421
MA0258.1	MA0258.1	0.347
MA0259.1	MA0259.1	0.177

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10653

Novel motif	Logo	P-value
1	1	0.0246
10	10	0.0201
100	100	0.407
101	101	0.573
102	102	0.695
103	103	0.0877
104	104	0.319
105	105	0.323
106	106	0.18
107	107	0.669
108	108	0.858
109	109	0.0074
11	11	0.0376
110	110	0.0769
111	111	0.0012
112	112	0.422
113	113	0.171
114	114	0.0603
115	115	0.97
116	116	0.306
117	117	0.00522
118	118	0.0222
119	119	0.158
12	12	0.966
120	120	0.0633
121	121	0.509
122	122	0.487
123	123	0.0377
124	124	0.96
125	125	0.22
126	126	0.281
127	127	0.308
128	128	0.445
129	129	0.167
13	13	0.123
130	130	0.206
131	131	0.00538
132	132	0.406
133	133	0.11
134	134	0.0589
135	135	0.193
136	136	0.0344
137	137	0.277
138	138	0.57
139	139	0.176
14	14	0.81
140	140	0.9
141	141	0.248
142	142	0.996
143	143	0.00203
144	144	0.851
145	145	0.402
146	146	0.76
147	147	0.272
148	148	0.0564
149	149	0.887
15	15	0.0781
150	150	0.361
151	151	0.725
152	152	0.282
153	153	0.38
154	154	0.901
155	155	0.192
156	156	0.931
157	157	0.659
158	158	0.972
159	159	0.839
16	16	0.0409
160	160	0.523
161	161	0.391
162	162	0.768
163	163	0.426
164	164	0.00743
165	165	0.437
166	166	0.0569
167	167	0.0214
168	168	0.307
169	169	0.00404
17	17	0.212
18	18	0.0434
19	19	0.866
2	2	0.636
20	20	0.118
21	21	0.322
22	22	0.791
23	23	0.766
24	24	0.268
25	25	0.38
26	26	0.00172
27	27	0.42
28	28	0.671
29	29	0.00379
3	3	0.0497
30	30	0.292
31	31	0.467
32	32	0.472
33	33	0.22
34	34	0.289
35	35	0.476
36	36	0.0833
37	37	0.0805
38	38	0.435
39	39	0.489
4	4	0.737
40	40	0.115
41	41	0.529
42	42	0.185
43	43	0.0751
44	44	0.364
45	45	0.569
46	46	0.0703
47	47	0.0301
48	48	0.0529
49	49	0.12
5	5	0.577
50	50	0.964
51	51	0.652
52	52	0.54
53	53	0.844
54	54	0.979
55	55	0.153
56	56	0.34
57	57	0.11
58	58	0.326
59	59	0.404
6	6	0.742
60	60	0.59
61	61	0.0545
62	62	0.325
63	63	0.254
64	64	0.156
65	65	0.668
66	66	0.148
67	67	0.461
68	68	0.861
69	69	0.621
7	7	0.494
70	70	0.00192
71	71	0.0107
72	72	0.39
73	73	0.044
74	74	0.129
75	75	0.0146
76	76	0.0875
77	77	0.55
78	78	0.698
79	79	0.703
8	8	0.0461
80	80	0.17
81	81	0.105
82	82	0.26
83	83	0.546
84	84	0.634
85	85	0.638
86	86	0.503
87	87	0.00295
88	88	0.978
89	89	0.469
9	9	0.972
90	90	0.00408
91	91	0.492
92	92	0.394
93	93	0.446
94	94	0.0152
95	95	0.0115
96	96	0.464
97	97	0.795
98	98	0.311
99	99	0.602

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10653

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010046 human heart - fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0007100 (primary circulatory organ)
0000948 (heart)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010046 (human heart - fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0004140 (primary heart field)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0007100,UBERON:0000948,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0003103,UBERON:0005291,UBERON:0001048,UBERON:0006598,UBERON:0002532,UBERON:0004535,UBERON:0005498,UBERON:0003081,UBERON:0001009,UBERON:0004140,UBERON:0009881,UBERON:0006603,UBERON:0004141,UBERON:0004872,UBERON:0003084,UBERON:0007005,UBERON:0004139,UBERON:0004291
+|DRA_sample_Accession=RNA-Seq@SAMD00013693
+|accession_numbers=CAGE;DRX008666;DRR009538;DRZ000963;DRZ002348;DRZ012313;DRZ013698!RNA-Seq;DRX012359;DRR013807;DRZ003008;
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0007100,UBERON:0000948,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010046
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:35293685..35293718,-!p1@TBX20!2.78!604.18!TBX20;;chr12:52437488..52437507,+!p2@NR4A1!2.52!331.95!NR4A1;;chr4:174451370..174451387,-!p1@HAND2!2.47!292.45!HAND2;;chr5:172662197..172662216,-!p1@NKX2-5!2.40!248.91!NKX2-5;;chr6:134210243..134210257,+!p1@TCF21!2.20!155.80!TCF21;;chr18:19749386..19749404,+!p2@GATA6!2.19!216.53!GATA6;;chr8:11561684..11561751,+!p1@GATA4!2.09!123.28!GATA4;;chr19:46800289..46800327,+!p2@HIF3A!2.09!120.66!HIF3A;;chr15:42749722..42749739,-!p2@ZFP106!2.07!202.16!ZFP106;;chr4:57547454..57547469,-!p1@HOPX!2.07!116.56!HOPX;;chr19:46801639..46801699,+!p1@HIF3A!2.06!113.41!HIF3A;;chr20:62680984..62680999,-!p1@SOX18!1.82!84.58!SOX18;;chr1:40105299..40105326,-!p1@HEYL!1.82!65.57!HEYL;;chr1:216896752..216896778,-!p1@ESRRG!1.77!57.37!ESRRG;;chr11:113930425..113930471,+!p1@ZBTB16!1.74!76.99!ZBTB16;;chr1:214161272..214161322,+!p1@PROX1!1.74!74.57!PROX1;;chr18:19749353..19749367,+!p4@GATA6!1.72!50.99!GATA6;;chr4:174451350..174451363,-!p3@HAND2!1.70!49.04!HAND2;;chr21:39870339..39870443,-!p1@ERG!1.67!45.55!ERG;;chr18:19749541..19749557,+!p1@GATA6!1.64!130.07!GATA6;;chr6:126070769..126070801,+!p1@HEY2!1.63!47.16!HEY2;;chr8:10588010..10588030,-!p1@SOX7!1.62!40.31!SOX7;;chr5:172662303..172662320,-!p2@NKX2-5!1.59!38.16!NKX2-5;;chr8:25902876..25902936,-!p1@EBF2!1.58!37.09!EBF2;;chr9:102584159..102584174,+!p2@NR4A3!1.56!61.74!NR4A3;;chr15:100106670..100106697,+!p4@MEF2A!1.56!57.31!MEF2A;;chr8:55370487..55370503,+!p1@SOX17!1.54!33.93!SOX17;;chr12:52445218..52445237,+!p1@NR4A1!1.51!378.98!NR4A1;;chr4:174450089..174450153,-!p2@HAND2!1.51!31.11!HAND2;;chr14:73360799..73360817,-!p1@DPF3!1.50!102.12!DPF3;;chr3:126076242..126076257,-!p1@KLF15!1.45!33.26!KLF15;;chr11:16629261..16629284,-!p1@SOX6!1.44!26.67!SOX6;;chr1:2985760..2985774,+!p1@PRDM16!1.44!26.27!PRDM16;;chr3:69915385..69915438,+!p3@MITF!1.43!25.87!MITF;;chr5:71803177..71803255,-!p1@ZNF366!1.40!24.05!ZNF366;;chrY:21906594..21906622,-!p1@KDM5D!1.40!23.98!KDM5D;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.38!23.11!PEG3;;chr5:153857778..153857794,-!p1@HAND1!1.38!23.04!HAND1;;chr12:114845810..114845824,-!p1@TBX5!1.37!22.64!TBX5;;chr15:100106244..100106259,+!p2@MEF2A!1.36!50.59!MEF2A;;chr8:106330656..106330684,+!p1@ZFPM2!1.32!50.99!ZFPM2;;chr16:54320617..54320643,-!p3@IRX3!1.32!25.33!IRX3;;chr2:19558373..19558392,-!p1@OSR1!1.31!52.20!OSR1;;chr7:15726296..15726315,-!p1@MEOX2!1.31!19.35!MEOX2;;chr13:72441315..72441454,-!p1@DACH1!1.30!37.62!DACH1;;chr7:15726243..15726293,-!p2@MEOX2!1.30!18.81!MEOX2;;chr8:93074803..93074845,-!p1@RUNX1T1!1.29!18.34!RUNX1T1;;chr19:46806868..46806883,+!p3@HIF3A!1.26!17.40!HIF3A;;chr9:102584262..102584276,+!p1@NR4A3!1.25!37.02!NR4A3;;chr11:16627614..16627651,-!p4@SOX6!1.24!16.53!SOX6;;chr3:25469724..25469773,+!p1@RARB!1.23!22.98!RARB;;chr1:10856639..10856662,-!p2@CASZ1!1.23!15.79!CASZ1;;chr9:14314131..14314147,-!p2@NFIB!1.22!85.99!NFIB;;chr5:88178983..88179012,-!p1@MEF2C!1.21!115.82!MEF2C;;chr10:131762504..131762555,-!p1@EBF3!1.21!15.39!EBF3;;chr17:6926362..6926377,+!p1@BCL6B!1.21!15.12!BCL6B;;chr8:80679993..80680011,-!p1@HEY1!1.20!21.43!HEY1;;chr1:170633348..170633399,+!p2@PRRX1!1.20!20.09!PRRX1;;chr3:69788576..69788648,+!p1@MITF!1.19!75.65!MITF;;chr4:81118647..81118666,+!p1@PRDM8!1.19!19.15!PRDM8;;chr19:54058073..54058088,+!p1@ZNF331!1.19!14.51!ZNF331;;chr17:41739283..41739297,-!p1@MEOX1!1.19!14.38!MEOX1;;chr7:28448965..28448994,+!p2@CREB5!1.17!48.10!CREB5;;chr5:124084493..124084524,-!p2@ZNF608!1.17!30.64!ZNF608;;chr9:102584241..102584261,+!p4@NR4A3!1.17!21.23!NR4A3;;chr5:172662230..172662241,-!p3@NKX2-5!1.17!13.91!NKX2-5;;chr3:126076264..126076305,-!p2@KLF15!1.16!18.95!KLF15;;chr11:113930401..113930422,+!p3@ZBTB16!1.16!13.30!ZBTB16;;chr2:238536207..238536290,+!p2@LRRFIP1!1.15!126.71!LRRFIP1;;chr3:114819124..114819200,-!p3@ZBTB20!1.15!30.23!ZBTB20;;chr2:145277882..145277967,-!p3@ZEB2!1.15!22.84!ZEB2;;chr1:10856665..10856683,-!p4@CASZ1!1.15!13.03!CASZ1;;chr15:37392094..37392116,-!p6@MEIS2!1.14!16.06!MEIS2;;chr7:150945754..150945789,-!p2@SMARCD3!1.13!38.09!SMARCD3;;chr1:41174988..41175047,+!p4@NFYC!1.13!33.32!NFYC;;chr14:105935396..105935413,+!p4@MTA1!1.13!12.63!MTA1;;chr1:216896780..216896800,-!p2@ESRRG!1.13!12.43!ESRRG;;chr10:35484053..35484076,+!p1@CREM!1.12!30.64!CREM;;chr1:23696308..23696339,-!p2@ZNF436!1.12!25.87!ZNF436;;chr16:54320101..54320125,-!p4@IRX3!1.12!17.40!IRX3;;chr2:242556880..242556899,-!p5@THAP4!1.12!12.16!THAP4;;chr18:19749517..19749531,+!p3@GATA6!1.11!21.36!GATA6;;chr2:192015701..192015743,-!p1@STAT4!1.11!16.39!STAT4;;chr18:6414884..6414942,-!p1@L3MBTL4!1.11!14.91!L3MBTL4;;chr18:53068911..53068935,-!p4@TCF4!1.11!13.50!TCF4;;chr6:391743..391759,+!p1@IRF4!1.11!11.76!IRF4;;chr7:14029283..14029311,-!p1@ETV1!1.10!61.61!ETV1;;chr1:61547894..61547968,+!p2@NFIA!1.10!33.66!NFIA;;chr2:166326200..166326216,+!p1@CSRNP3!1.10!17.20!CSRNP3;;chr11:113930291..113930339,+!p2@ZBTB16!1.08!18.27!ZBTB16;;chr9:14314566..14314618,-!p1@NFIB!1.07!130.27!NFIB;;chr1:61548069..61548102,+!p3@NFIA!1.07!26.00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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0004872,UBERON:0004140,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/heart%252c%2520fetal%252c%2520pool1.CNhs10653.10046-101G1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/heart%252c%2520fetal%252c%2520pool1.CNhs10653.10046-101G1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/heart%252c%2520fetal%252c%2520pool1.CNhs10653.10046-101G1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/heart%252c%2520fetal%252c%2520pool1.CNhs10653.10046-101G1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/heart%252c%2520fetal%252c%2520pool1.CNhs10653.10046-101G1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10046-101G1
 |is_a=EFO:0002091;;FF:0010046
 |is_obsolete=
+|library_id=CNhs10653!RDhi10058
+|library_id_phase_based=2:CNhs10653
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10046
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10046
 |name=heart, fetal, pool1
 |namespace=FANTOM5
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10653,LSID658,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=101
 |rna_catalog_number=Cat:636583
@@ Line 59: / Line 79: @@
 |rna_weight_ug=50
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+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=MEF2{A,B,C,D}:7.19242170741;NR5A1,2:3.60926723644;GATA6:3.25230130226;SRF:3.19340235577;TGIF1:3.0197264803;MAFB:2.41795249032;AR:2.41779582517;MYBL2:2.34142995391;ESRRA:2.25886675351;RORA:2.20342372145;RBPJ:2.13739009134;NANOG:2.12322391082;MAZ:2.104282988;TLX1..3_NFIC{dimer}:2.08338593562;GATA4:1.99965892581;SOX5:1.93947645473;TFAP2{A,C}:1.90179167133;NFE2L1:1.88792929168;NKX2-1,4:1.84971216822;HOX{A4,D4}:1.81145888532;FOXL1:1.73891825463;NFATC1..3:1.71303589936;SMAD1..7,9:1.71296571554;TEAD1:1.68440689006;PATZ1:1.68193184157;GCM1,2:1.6330647997;SP1:1.58284720326;TBP:1.57357953905;NKX2-2,8:1.55299293416;MZF1:1.48701685132;HIC1:1.47814108563;MED-1{core}:1.46185051035;HAND1,2:1.45075358248;NR1H4:1.44318214228;T:1.41127374736;PRDM1:1.4095522796;CUX2:1.40320184247;FOX{D1,D2}:1.34951562422;ZFP161:1.34583837086;IKZF1:1.30732434521;RXR{A,B,G}:1.29009355771;PAX5:1.27513121415;EGR1..3:1.27263449587;GFI1B:1.26293840205;GTF2A1,2:1.25344672141;HSF1,2:1.23095539501;TFAP4:1.20164267568;EP300:1.19188835622;EN1,2:1.1804540943;TFAP2B:1.16644179889;RREB1:1.12703794124;MTE{core}:1.10962502076;STAT1,3:1.09617478634;XBP1:1.03123199238;ATF2:1.01909726064;GTF2I:0.990476049294;BREu{core}:0.94966603847;GFI1:0.938200058057;NHLH1,2:0.91214899645;SOX17:0.881775485411;IKZF2:0.867815542194;HBP1_HMGB_SSRP1_UBTF:0.863633792814;SPZ1:0.861065217666;POU3F1..4:0.846891221738;SREBF1,2:0.844737708777;SOX{8,9,10}:0.842545305825;TLX2:0.785881365791;KLF4:0.768265028235;CDC5L:0.743431232739;NR3C1:0.742280046347;PAX6:0.730149101726;NKX6-1,2:0.721390507187;FOXO1,3,4:0.711876923005;MYFfamily:0.709596573611;ZNF423:0.678207816561;XCPE1{core}:0.655954124877;MYOD1:0.64691700526;FOX{I1,J2}:0.645445511088;TFCP2:0.629481945058;ZIC1..3:0.622402216205;LMO2:0.602130436898;FOXQ1:0.568290944892;ZNF238:0.565585895314;JUN:0.560590494878;FOX{F1,F2,J1}:0.559062367399;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.546815208457;VSX1,2:0.5183514125;RXRA_VDR{dimer}:0.49976081872;PDX1:0.496431091736;PBX1:0.4798018727;FOXP3:0.463959829267;CREB1:0.410297879549;NR6A1:0.381597262171;ZNF143:0.359839805773;CDX1,2,4:0.333503354354;ZNF384:0.329594930173;SOX2:0.326081120511;BPTF:0.31307586938;POU1F1:0.292744377837;NFIX:0.289951575498;TBX4,5:0.269732970776;NRF1:0.264327351973;MTF1:0.246293624381;ATF4:0.245770783445;NFY{A,B,C}:0.245571426846;GLI1..3:0.237712090935;PAX2:0.231484356175;FOXP1:0.222145381748;TOPORS:0.216857085312;NANOG{mouse}:0.210207248754;TAL1_TCF{3,4,12}:0.206392991839;EVI1:0.191317718019;GZF1:0.177265649256;IRF7:0.172000673605;ETS1,2:0.167528820047;HMGA1,2:0.164810374223;ZNF148:0.148342616107;HOX{A5,B5}:0.146780735482;FOXA2:0.136838079181;LEF1_TCF7_TCF7L1,2:0.134420795499;ESR1:0.105168974468;REST:0.0805792533062;FOXN1:0.051073555374;NKX3-1:0.0505593626601;FOSL2:0.0488457358715;ADNP_IRX_SIX_ZHX:0.00408301422497;ATF5_CREB3:-0.0723016154154;HMX1:-0.100600231449;E2F1..5:-0.129528770558;HOX{A6,A7,B6,B7}:-0.15106339755;RFX2..5_RFXANK_RFXAP:-0.159339220171;HNF1A:-0.174455472589;PPARG:-0.183831591569;PAX1,9:-0.196583251986;HIF1A:-0.203307683297;POU6F1:-0.203688199861;HNF4A_NR2F1,2:-0.204136898558;UFEwm:-0.220870940096;SPI1:-0.231353246224;SPIB:-0.234700528964;STAT5{A,B}:-0.249545266757;ELF1,2,4:-0.251559706917;EBF1:-0.274898838291;ATF6:-0.279014647491;TP53:-0.286681968431;STAT2,4,6:-0.287420174096;NKX3-2:-0.287546641099;YY1:-0.296670574339;PRRX1,2:-0.313467483228;SNAI1..3:-0.327272650647;TFDP1:-0.359352728084;ZBTB6:-0.425896297372;DBP:-0.429563038616;NKX2-3_NKX2-5:-0.434115131653;ALX1:-0.437751770353;HLF:-0.447798039349;ALX4:-0.503333475955;RFX1:-0.51306162987;NFKB1_REL_RELA:-0.519849775487;IRF1,2:-0.560490712311;ZEB1:-0.621708707667;HOXA9_MEIS1:-0.658439356767;AHR_ARNT_ARNT2:-0.67387611078;POU5F1:-0.682034181988;OCT4_SOX2{dimer}:-0.686252623517;MYB:-0.712354486456;BACH2:-0.724239008006;NFE2L2:-0.749930697962;LHX3,4:-0.772470219416;FOS_FOS{B,L1}_JUN{B,D}:-0.80109029926;RUNX1..3:-0.806264293255;ARID5B:-0.822106440086;NFE2:-0.831140339527;DMAP1_NCOR{1,2}_SMARC:-0.842601932026;NFIL3:-0.845353046388;bHLH_family:-0.861066131426;PITX1..3:-0.862952661741;CEBPA,B_DDIT3:-0.886127934641;FOXM1:-0.899969044859;TEF:-0.907664593761;ONECUT1,2:-0.912327395119;ZBTB16:-0.933424177594;PAX3,7:-1.01835094065;PAX8:-1.10483044571;POU2F1..3:-1.30030632152;ELK1,4_GABP{A,B1}:-1.35951096428;PAX4:-1.40177164179;AIRE:-1.4255800863;FOXD3:-1.48741014321;HES1:-1.49432881789;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.49643603429;CRX:-1.70242668215
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10046-101G1;search_select_hide=table117:FF:10046-101G1
 }}

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FF:10046-101G1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:17, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0