FF:10030-101E3: Difference between revisions

Latest revision as of 12:15, 3 June 2020

Name:	retina, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10636
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	retina
dev stage	24-65 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	9100123A
catalog number	Cat:636579
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005353

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10636		CAGE		DRX008716		DRR009588

Accession ID Hg19

Library id		BAM		CTSS
CNhs10636		DRZ001013		DRZ002398

Accession ID Hg38

Library id		BAM		CTSS
CNhs10636		DRZ012363		DRZ013748

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10017		download		download		download		download

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.058
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0158
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.337
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.058
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.109
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.03
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.352
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.03
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.03
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0.252
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.252
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.058
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.167
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0.03
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.03
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0852
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.133
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.03
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.03
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.102
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.03
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.445
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.142
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.03
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.058
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.03
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0.176
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.6
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.03
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.253
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.109
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.114
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.472
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.269
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.058
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.058
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0478
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.03
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0812
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.269
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.03
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.058
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.03
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.03
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.551
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0844
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.234
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.0844
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.216
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.015
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.03
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.269
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.058
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.109
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.03
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.03
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0.66
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0.778
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.155
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.155
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0.133
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.03
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.03
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0712
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0.03
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0.03
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.03
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10636

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00322
MA0003.1	MA0003.1	0.852
MA0004.1	MA0004.1	0.257
MA0006.1	MA0006.1	0.893
MA0007.1	MA0007.1	0.39
MA0009.1	MA0009.1	0.366
MA0014.1	MA0014.1	0.428
MA0017.1	MA0017.1	0.119
MA0018.2	MA0018.2	0.264
MA0019.1	MA0019.1	0.324
MA0024.1	MA0024.1	0.318
MA0025.1	MA0025.1	0.0467
MA0027.1	MA0027.1	0.708
MA0028.1	MA0028.1	0.0272
MA0029.1	MA0029.1	0.317
MA0030.1	MA0030.1	0.0149
MA0031.1	MA0031.1	0.608
MA0035.2	MA0035.2	0.57
MA0038.1	MA0038.1	0.0142
MA0039.2	MA0039.2	0.837
MA0040.1	MA0040.1	0.452
MA0041.1	MA0041.1	0.211
MA0042.1	MA0042.1	0.374
MA0043.1	MA0043.1	0.988
MA0046.1	MA0046.1	0.66
MA0047.2	MA0047.2	0.422
MA0048.1	MA0048.1	0.202
MA0050.1	MA0050.1	0.802
MA0051.1	MA0051.1	0.828
MA0052.1	MA0052.1	1.26616e-4
MA0055.1	MA0055.1	0.0183
MA0057.1	MA0057.1	0.949
MA0058.1	MA0058.1	0.298
MA0059.1	MA0059.1	0.00786
MA0060.1	MA0060.1	0.266
MA0061.1	MA0061.1	0.00148
MA0062.2	MA0062.2	0.00174
MA0065.2	MA0065.2	0.00532
MA0066.1	MA0066.1	0.0333
MA0067.1	MA0067.1	0.957
MA0068.1	MA0068.1	0.00327
MA0069.1	MA0069.1	0.82
MA0070.1	MA0070.1	0.955
MA0071.1	MA0071.1	0.569
MA0072.1	MA0072.1	0.215
MA0073.1	MA0073.1	0.509
MA0074.1	MA0074.1	0.597
MA0076.1	MA0076.1	0.0577
MA0077.1	MA0077.1	0.94
MA0078.1	MA0078.1	0.309
MA0079.2	MA0079.2	0.176
MA0080.2	MA0080.2	4.54184e-4
MA0081.1	MA0081.1	0.156
MA0083.1	MA0083.1	0.545
MA0084.1	MA0084.1	0.641
MA0087.1	MA0087.1	0.338
MA0088.1	MA0088.1	0.0873
MA0090.1	MA0090.1	0.632
MA0091.1	MA0091.1	0.741
MA0092.1	MA0092.1	0.53
MA0093.1	MA0093.1	0.297
MA0099.2	MA0099.2	3.33504e-13
MA0100.1	MA0100.1	0.211
MA0101.1	MA0101.1	0.00651
MA0102.2	MA0102.2	0.272
MA0103.1	MA0103.1	0.245
MA0104.2	MA0104.2	0.0558
MA0105.1	MA0105.1	5.94374e-8
MA0106.1	MA0106.1	0.00297
MA0107.1	MA0107.1	0.00597
MA0108.2	MA0108.2	3.21087e-9
MA0111.1	MA0111.1	0.377
MA0112.2	MA0112.2	0.00276
MA0113.1	MA0113.1	0.575
MA0114.1	MA0114.1	0.0404
MA0115.1	MA0115.1	0.164
MA0116.1	MA0116.1	7.80428e-4
MA0117.1	MA0117.1	0.426
MA0119.1	MA0119.1	0.102
MA0122.1	MA0122.1	0.393
MA0124.1	MA0124.1	0.743
MA0125.1	MA0125.1	0.00548
MA0131.1	MA0131.1	0.91
MA0135.1	MA0135.1	0.00575
MA0136.1	MA0136.1	7.65245e-5
MA0137.2	MA0137.2	0.911
MA0138.2	MA0138.2	0.286
MA0139.1	MA0139.1	0.422
MA0140.1	MA0140.1	0.288
MA0141.1	MA0141.1	0.0861
MA0142.1	MA0142.1	0.378
MA0143.1	MA0143.1	0.899
MA0144.1	MA0144.1	0.297
MA0145.1	MA0145.1	0.691
MA0146.1	MA0146.1	0.126
MA0147.1	MA0147.1	0.0162
MA0148.1	MA0148.1	0.165
MA0149.1	MA0149.1	0.0113
MA0150.1	MA0150.1	4.976e-4
MA0152.1	MA0152.1	0.866
MA0153.1	MA0153.1	0.591
MA0154.1	MA0154.1	0.0227
MA0155.1	MA0155.1	0.872
MA0156.1	MA0156.1	6.85219e-4
MA0157.1	MA0157.1	0.581
MA0159.1	MA0159.1	0.104
MA0160.1	MA0160.1	0.161
MA0162.1	MA0162.1	0.266
MA0163.1	MA0163.1	8.99711e-11
MA0164.1	MA0164.1	0.283
MA0258.1	MA0258.1	0.046
MA0259.1	MA0259.1	0.178

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10636

Novel motif	Logo	P-value
1	1	0.0139
10	10	0.0115
100	100	0.196
101	101	0.978
102	102	0.891
103	103	0.0214
104	104	0.628
105	105	0.858
106	106	0.212
107	107	0.491
108	108	0.652
109	109	0.0267
11	11	0.0245
110	110	0.0532
111	111	6.98903e-4
112	112	0.39
113	113	0.254
114	114	0.0305
115	115	0.686
116	116	0.376
117	117	0.00536
118	118	0.025
119	119	0.248
12	12	0.924
120	120	0.0628
121	121	0.926
122	122	0.577
123	123	0.0804
124	124	0.761
125	125	0.084
126	126	0.193
127	127	0.418
128	128	0.52
129	129	0.195
13	13	0.0233
130	130	0.464
131	131	0.114
132	132	0.442
133	133	0.0176
134	134	0.136
135	135	0.971
136	136	0.0723
137	137	0.931
138	138	0.213
139	139	0.106
14	14	0.71
140	140	0.425
141	141	0.0429
142	142	0.98
143	143	0.00822
144	144	0.694
145	145	0.294
146	146	0.679
147	147	0.673
148	148	0.0173
149	149	0.997
15	15	0.0201
150	150	0.177
151	151	0.71
152	152	0.406
153	153	0.964
154	154	0.501
155	155	0.179
156	156	0.508
157	157	0.301
158	158	0.582
159	159	0.386
16	16	0.052
160	160	0.132
161	161	0.353
162	162	0.849
163	163	0.761
164	164	0.00845
165	165	0.167
166	166	0.428
167	167	0.0141
168	168	0.94
169	169	0.0119
17	17	0.198
18	18	0.0517
19	19	0.669
2	2	0.593
20	20	0.103
21	21	0.0886
22	22	0.655
23	23	0.863
24	24	0.396
25	25	0.273
26	26	0.0038
27	27	0.934
28	28	0.845
29	29	0.00628
3	3	0.0462
30	30	0.162
31	31	0.832
32	32	0.0273
33	33	0.0453
34	34	0.44
35	35	0.403
36	36	0.0323
37	37	0.0686
38	38	0.478
39	39	0.878
4	4	0.694
40	40	0.159
41	41	0.183
42	42	0.168
43	43	0.111
44	44	0.187
45	45	0.686
46	46	0.0409
47	47	0.0439
48	48	0.0807
49	49	0.0965
5	5	0.266
50	50	0.972
51	51	0.5
52	52	0.776
53	53	0.806
54	54	0.659
55	55	0.534
56	56	0.628
57	57	0.122
58	58	0.395
59	59	0.326
6	6	0.57
60	60	0.285
61	61	0.0474
62	62	0.169
63	63	0.283
64	64	0.186
65	65	0.57
66	66	0.125
67	67	0.449
68	68	0.257
69	69	0.359
7	7	0.169
70	70	0.00813
71	71	0.00869
72	72	0.495
73	73	0.0816
74	74	0.449
75	75	0.00484
76	76	0.135
77	77	0.902
78	78	0.0492
79	79	0.244
8	8	0.0354
80	80	0.23
81	81	0.247
82	82	0.504
83	83	0.778
84	84	0.644
85	85	0.533
86	86	0.289
87	87	0.0153
88	88	0.726
89	89	0.238
9	9	0.722
90	90	0.0299
91	91	0.472
92	92	0.384
93	93	0.676
94	94	0.0545
95	95	0.0553
96	96	0.239
97	97	0.921
98	98	0.0973
99	99	0.921

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10636

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010030 human retina - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000966 (retina)
0000970 (eye)
0000019 (camera-type eye)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0005388 (photoreceptor array)
0000020 (sense organ)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001802 (posterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010030 (human retina - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0003056 (pre-chordal neural plate)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0000966,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0002346,UBERON:0000064,UBERON:0000073,UBERON:0000047,UBERON:0004121,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0001444,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0005388,UBERON:0000020,UBERON:0001032,UBERON:0005085,UBERON:0001048,UBERON:0006598,UBERON:0002532,UBERON:0001016,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0002104,UBERON:0001802,UBERON:0005743,UBERON:0004456,UBERON:0001456,UBERON:0003075,UBERON:0003056,UBERON:0003072,UBERON:0003071,UBERON:0006601,UBERON:0004128,UBERON:0007284
+|DRA_sample_Accession=CAGE@SAMD00005353
+|HumanCAGEScanFiles=NCig10017;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/retina%252c%2520adult%252c%2520pool1.NCig10017.10030-101E3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/retina%252c%2520adult%252c%2520pool1.NCig10017.10030-101E3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/retina%252c%2520adult%252c%2520pool1.NCig10017.10030-101E3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/retina%252c%2520adult%252c%2520pool1.NCig10017.10030-101E3.hg19.GCTATA.pairs.bed.gz
+|accession_numbers=CAGE;DRX008716;DRR009588;DRZ001013;DRZ002398;DRZ012363;DRZ013748
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000966,UBERON:0000970,UBERON:0000019,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005388,UBERON:0000020,UBERON:0001032,UBERON:0010317,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001802,UBERON:0004456,UBERON:0001456,UBERON:0010230
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010030
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr19:48325184..48325211,+!p1@CRX!2.52!333.44!CRX;;chr22:38380543..38380569,-!p1@SOX10!2.31!203.14!SOX10;;chr14:24553835..24553850,-!p1@NRL!2.25!177.91!NRL;;chr14:57277178..57277203,-!p1@OTX2!2.21!159.46!OTX2;;chr3:69985734..69985749,+!p2@MITF!2.18!149.24!MITF;;chr9:77112244..77112262,+!p1@RORB!2.09!137.45!RORB;;chr7:100065686..100065701,-!p2@TSC22D4!1.92!81.27!TSC22D4;;chr12:54779511..54779577,-!p5@ZNF385A!1.91!80.41!ZNF385A;;chr17:53342311..53342400,+!p1@HLF!1.90!88.35!HLF;;chr6:1389789..1389821,+!p1@FOXF2!1.80!84.56!FOXF2;;chr11:125034640..125034655,+!p1@PKNOX2!1.73!53.04!PKNOX2;;chr13:72441315..72441454,-!p1@DACH1!1.71!97.99!DACH1;;chr2:223163706..223163730,-!p1@PAX3!1.71!49.75!PAX3;;chr4:111544219..111544240,-!p1@PITX2!1.71!49.75!PITX2;;chr11:61522844..61522875,+!p2@C11orf9!1.70!49.53!C11orf9;;chr6:10415276..10415341,-!p2@TFAP2A!1.68!57.40!TFAP2A;;chr2:182545234..182545252,-!p1@NEUROD1!1.68!47.17!NEUROD1;;chr15:72102881..72102925,+!p1@NR2E3!1.68!47.10!NR2E3;;chr19:46801639..46801699,+!p1@HIF3A!1.68!46.75!HIF3A;;chr6:10412600..10412637,-!p1@TFAP2A!1.66!73.26!TFAP2A;;chr20:62680984..62680999,-!p1@SOX18!1.66!58.54!SOX18;;chr18:56940611..56940660,-!p1@RAX!1.66!44.67!RAX;;chr19:3772220..3772236,-!p1@RAX2!1.65!44.10!RAX2;;chr2:45168875..45168916,+!p1@SIX3!1.65!43.67!SIX3;;chr14:76842457..76842494,+!p1@ESRRB!1.64!42.89!ESRRB;;chr2:45168834..45168847,+!p2@SIX3!1.63!41.81!SIX3;;chr11:31825588..31825613,-!p8@PAX6!1.63!41.24!PAX6;;chr15:42749722..42749739,-!p2@ZFP106!1.58!65.12!ZFP106;;chr22:41763452..41763466,+!p2@TEF!1.58!36.67!TEF;;chr12:26277817..26277863,-!p2@BHLHE41!1.57!48.96!BHLHE41;;chr4:111558135..111558198,-!p2@PITX2!1.57!36.52!PITX2;;chr6:391743..391759,+!p1@IRF4!1.55!34.31!IRF4;;chr2:45169193..45169219,+!p3@SIX3!1.52!32.09!SIX3;;chr5:92918919..92918942,+!p1@NR2F1!1.51!136.66!NR2F1;;chr11:31832658..31832681,-!p1@PAX6!1.51!31.45!PAX6;;chrY:21906594..21906622,-!p1@KDM5D!1.50!30.88!KDM5D;;chr2:145277882..145277967,-!p3@ZEB2!1.47!48.68!ZEB2;;chr9:126774018..126774055,+!p1@LHX2!1.46!27.95!LHX2;;chr1:197886461..197886558,+!p1@LHX9!1.45!27.45!LHX9;;chr1:40105299..40105326,-!p1@HEYL!1.45!27.09!HEYL;;chr6:10412392..10412409,-!p4@TFAP2A!1.44!30.31!TFAP2A;;chr14:57277098..57277116,-!p3@OTX2!1.43!26.09!OTX2;;chr11:61520075..61520136,+!p1@C11orf9!1.42!52.96!C11orf9;;chr5:134369879..134369898,-!p2@PITX1!1.42!25.52!PITX1;;chr1:216896752..216896778,-!p1@ESRRG!1.42!25.45!ESRRG;;chr11:31839488..31839515,-!p3@PAX6!1.42!25.23!PAX6;;chr11:16133391..16133439,-!p6@SOX6!1.42!25.16!SOX6;;chr12:26277956..26277980,-!p1@BHLHE41!1.41!85.84!BHLHE41;;chr3:25469724..25469773,+!p1@RARB!1.41!35.74!RARB;;chr19:37837218..37837237,+!p5@HKR1!1.41!24.95!HKR1;;chr3:52002194..52002250,-!p5@PCBP4!1.39!23.66!PCBP4;;chr9:114287433..114287513,+!p1@ZNF483!1.38!58.04!ZNF483;;chr12:52445218..52445237,+!p1@NR4A1!1.37!274.47!NR4A1;;chr11:113930425..113930471,+!p1@ZBTB16!1.36!31.31!ZBTB16;;chr6:10415484..10415508,-!p3@TFAP2A!1.33!20.23!TFAP2A;;chr21:39870339..39870443,-!p1@ERG!1.32!20.01!ERG;;chr17:59477233..59477263,+!p1@TBX2!1.31!58.61!TBX2;;chr3:25470156..25470227,+!p2@RARB!1.30!18.73!RARB;;chr17:38256799..38256815,-!p3@NR1D1!1.29!33.09!NR1D1;;chr5:92919100..92919135,+!p3@NR2F1!1.29!22.44!NR2F1;;chr14:74706150..74706155,+!p1@VSX2!1.29!18.30!VSX2;;chr17:7492684..7492778,-!p2@SOX15!1.28!37.38!SOX15;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.28!17.94!PEG3;;chr6:1389824..1389840,+!p3@FOXF2!1.27!17.58!FOXF2;;chr17:38256822..38256851,-!p1@NR1D1!1.25!129.94!NR1D1;;chr8:10588010..10588030,-!p1@SOX7!1.23!16.15!SOX7;;chr11:31832862..31832884,-!p2@PAX6!1.23!16.01!PAX6;;chr4:174451370..174451387,-!p1@HAND2!1.22!15.51!HAND2;;chr1:47903709..47903764,+!p1@BC169308!1.21!17.44!FOXD2;;chr1:2461692..2461710,-!p1@HES5!1.21!15.30!HES5;;chr2:180726040..180726052,-!p2@ZNF385B!1.20!14.87!ZNF385B;;chr12:54785074..54785122,-!p2@ZNF385A!1.19!22.30!ZNF385A;;chr2:166326200..166326216,+!p1@CSRNP3!1.19!21.37!CSRNP3;;chr12:125003087..125003141,-!p4@NCOR2!1.19!18.51!NCOR2;;chr4:87928413..87928433,+!p3@AFF1!1.18!86.13!AFF1;;chr16:79634624..79634642,-!p1@MAF!1.18!54.97!MAF;;chr3:114819124..114819200,-!p3@ZBTB20!1.18!32.59!ZBTB20;;chr2:63277948..63277974,+!p1@OTX1!1.18!14.01!OTX1;;chr17:59477275..59477286,+!p3@TBX2!1.17!18.51!TBX2;;chr6:50786591..50786614,+!p1@TFAP2B!1.17!13.79!TFAP2B;;chr16:67198683..67198698,+!p2@HSF4!1.17!13.72!HSF4;;chr17:53344980..53345011,+!p3@HLF!1.17!13.65!HLF;;chr6:1610293..1610310,+!p1@FOXC1!1.16!22.52!FOXC1;;chr6:126070769..126070801,+!p1@HEY2!1.16!15.37!HEY2;;chr1:170632285..170632309,+!p1@PRRX1!1.16!15.15!PRRX1;;chr11:8040739..8040815,+!p4@TUB!1.15!13.22!TUB;;chr17:53344945..53344977,+!p2@HLF!1.15!13.08!HLF;;chr19:49140609..49140643,-!p1@DBP!1.14!72.05!DBP;;chr6:1312325..1312340,+!p1@FOXQ1!1.14!20.94!FOXQ1;;chr4:81118647..81118666,+!p1@PRDM8!1.14!16.87!PRDM8;;chr1:2985760..2985774,+!p1@PRDM16!1.14!12.94!PRDM16;;chr11:47400078..47400106,-!p1@SPI1!1.14!12.72!SPI1;;chr7:63505799..63505904,+!p1@ZNF727!1.14!12.65!ZNF727;;chr5:134369905..134369972,-!p1@PITX1!1.13!19.37!PITX1;;chr12:26277929..26277955,-!p3@BHLHE41!1.13!17.94!BHLHE41;;chr11:125034605..125034636,+!p2@PKNOX2!1.13!12.58!PKNOX2;;chr16:67198633..67198671,+!p1@HSF4!1.13!12.37!HSF4;;chr12:55413751..55413765,+!p1@NEUROD4!1.12!12.15!NEUROD4;;chr19:3772263..3772274,-!p2@RAX2!1.12!12.08!RAX2;;chr3:52001448..52001478,-!p2@PCBP4!1.11!165.54!PCBP4;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.11!12.72!GLIS1;;chr2:45169233..45169244,+!p10@SIX3!1.11!12.01!SIX3;;chr3:69985792..69985803,+!p7@MITF!1.11!11.87!MITF;;chr14:24551143..24551178,-!p6@NRL!1.11!11.87!NRL;;chr5:71803177..71803255,-!p1@ZNF366!1.10!11.58!ZNF366;;chr1:214161272..214161322,+!p1@PROX1!1.09!16.08!PROX1;;chr1:165414325..165414369,-!p1@RXRG!1.09!11.29!RXRG;;chr21:47063625..47063658,+!p1@PCBP3!1.08!48.10!PCBP3;;chr8:80679993..80680011,-!p1@HEY1!1.07!15.87!HEY1;;chr16:85932760..85932775,+!p1@IRF8!1.07!10.72!IRF8;;chr7:44143925..44143970,+!p1@AEBP1!1.06!236.02!AEBP1;;chr1:10856639..10856662,-!p2@CASZ1!1.06!10.51!CASZ1;;chr11:113930291..113930339,+!p2@ZBTB16!1.05!16.87!ZBTB16;;chr19:38085768..38085821,+!p1@ZNF540!1.04!15.22!ZNF540;;chr9:126773880..126773895,+!p2@LHX2!1.04!10.08!LHX2;;chr11:31832807..31832823,-!p4@PAX6!1.04!10.08!PAX6;;chr9:129376233..129376251,+!p2@LMX1B!1.04!9.86!LMX1B;;chr5:158526917..158526932,-!p1@EBF1!1.03!24.52!EBF1;;chr3:114866084..114866118,-!p2@ZBTB20!1.02!34.95!ZBTB20;;chr2:71127699..71127744,+!p1@VAX2!1.02!19.58!VAX2;;chr3:126076242..126076257,-!p1@KLF15!1.02!11.79!KLF15;;chr4:149363494..149363543,-!p1@NR3C2!1.02!9.36!NR3C2;;chrX:101186981..101187030,-!p1@ZMAT1!1.01!30.73!ZMAT1;;chr8:55370487..55370503,+!p1@SOX17!1.01!9.22!SOX17;;chr6:10412576..10412599,-!p5@TFAP2A!1.01!9.15!TFAP2A;;chr4:111563076..111563124,-!p8@PITX2!1.01!9.15!PITX2;;chr1:61548069..61548102,+!p3@NFIA!1.00!22.44!NFIA;;chr2:45169143..45169167,+!p5@SIX3!1.00!9.08!SIX3;;chr17:70117153..70117174,+!p1@SOX9!0.99!92.13!SOX9;;chr15:61521417..61521460,-!p2@RORA!0.99!19.94!RORA;;chr3:126076264..126076305,-!p2@KLF15!0.99!12.37!KLF15;;chr19:46800289..46800327,+!p2@HIF3A!0.99!8.86!HIF3A;;chr9:126774058..126774081,+!p3@LHX2!0.99!8.72!LHX2;;chr1:170633348..170633399,+!p2@PRRX1!0.98!11.65!PRRX1;;chr5:92919068..92919082,+!p5@NR2F1!0.98!10.29!NR2F1;;chr3:128212033..128212051,-!p1@GATA2!0.98!8.58!GATA2;;chr10:119302232..119302265,+!p1@EMX2!0.98!8.58!EMX2;;chr16:79633894..79633954,-!p3@MAF!0.97!16.23!MAF;;chr16:79634595..79634620,-!p2@MAF!0.97!15.37!MAF;;chr5:92918956..92918969,+!p4@NR2F1!0.97!9.22!NR2F1;;chr3:181429704..181429722,+!p1@SOX2!0.97!8.36!SOX2;;chr19:16435625..16435682,+!p1@KLF2!0.96!266.46!KLF2;;chr17:59477197..59477212,+!p2@TBX2!0.96!14.22!TBX2;;chr1:10754477..10754517,-!p1@CASZ1!0.96!13.58!CASZ1;;chr12:54785054..54785072,-!p4@ZNF385A!0.96!9.29!ZNF385A;;chr7:35293685..35293718,-!p1@TBX20!0.96!8.22!TBX20;;chr2:45168856..45168867,+!p7@SIX3!0.96!8.15!SIX3;;chr13:72441074..72441172,-!p2@DACH1!0.96!8.08!DACH1;;chr6:1389989..1390019,+!p2@FOXF2!0.95!7.93!FOXF2;;chr2:88752207..88752218,-!p1@FOXI3!0.95!7.86!FOXI3;;chr2:46524897..46524911,+!p2@EPAS1!0.94!22.23!EPAS1;;chr1:61548374..61548415,+!p4@NFIA!0.94!14.80!NFIA;;chr13:100634031..100634045,+!p1@ZIC2!0.94!7.79!ZIC2;;chr11:125034586..125034604,+!p3@PKNOX2!0.94!7.72!PKNOX2;;chr5:88178983..88179012,-!p1@MEF2C!0.93!60.04!MEF2C;;chr16:86600426..86600441,+!p1@FOXC2!0.93!18.94!FOXC2;;chr7:44143978..44143989,+!p2@AEBP1!0.93!14.22!AEBP1;;chr18:42260840..42260860,+!p2@SETBP1!0.93!7.51!SETBP1;;chr2:63277978..63277995,+!p2@OTX1!0.92!7.29!OTX1;;chr9:102584159..102584174,+!p2@NR4A3!0.91!13.15!NR4A3;;chr19:49140572..49140594,-!p2@DBP!0.91!11.51!DBP;;chr3:42947600..42947680,+!p1@ZNF662!0.91!10.51!ZNF662;;chr2:68592406..68592424,+!p1@PLEK!0.91!7.22!PLEK;;chr8:40755333..40755352,-!p1@ZMAT4!0.91!7.08!ZMAT4;;chr20:25062773..25062779,-!p3@VSX1!0.91!7.08!VSX1;;chr2:45168997..45169020,+!p4@SIX3!0.90!7.00!SIX3;;chr3:25469815..25469866,+!p3@RARB!0.90!7.00!RARB;;chr15:53082521..53082549,-!p1@ONECUT1!0.90!6.93!ONECUT1;;chr11:31832610..31832639,-!p5@PAX6!0.90!6.93!PAX6;;chr3:193853927..193853944,+!p1@HES1!0.89!232.30!HES1;;chr19:45971246..45971265,+!p1@FOSB!0.89!132.59!FOSB;;chr7:149470641..149470694,-!p1@ZNF467!0.89!32.09!ZNF467;;chr10:111987079..111987115,+!p3@MXI1!0.89!9.36!MXI1;;chr5:92918768..92918783,+!p8@NR2F1!0.89!6.79!NR2F1;;chr3:21792682..21792720,-!p1@ZNF385D!0.89!6.79!ZNF385D;;chr3:69986115..69986119,+!p12@MITF!0.89!6.72!MITF;;chr11:113930401..113930422,+!p3@ZBTB16!0.89!6.72!ZBTB16;;chr5:92918894..92918912,+!p2@NR2F1!0.88!22.59!NR2F1;;chr1:61547894..61547968,+!p2@NFIA!0.88!20.01!NFIA;;chr12:24715376..24715432,-!p1@SOX5!0.88!8.36!SOX5;;chr4:149363544..149363583,-!p3@NR3C2!0.88!7.72!NR3C2;;chr2:45236540..45236577,-!p1@SIX2!0.88!6.65!SIX2;;chr4:54966328..54966335,+!p1@GSX2!0.88!6.65!GSX2;;chr1:10856665..10856683,-!p4@CASZ1!0.88!6.65!CASZ1;;chr4:8873545..8873583,-!p1@HMX1!0.88!6.58!HMX1;;chr18:52989031..52989079,-!p2@TCF4!0.87!15.65!TCF4;;chr7:113726357..113726443,+!p1@FOXP2!0.87!11.51!FOXP2;;chr20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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000966;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0003056,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/retina%252c%2520adult%252c%2520pool1.CNhs10636.10030-101E3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/retina%252c%2520adult%252c%2520pool1.CNhs10636.10030-101E3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/retina%252c%2520adult%252c%2520pool1.CNhs10636.10030-101E3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/retina%252c%2520adult%252c%2520pool1.CNhs10636.10030-101E3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/retina%252c%2520adult%252c%2520pool1.CNhs10636.10030-101E3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10030-101E3
 |is_a=EFO:0002091;;FF:0010030
 |is_obsolete=
+|library_id=CNhs10636
+|library_id_phase_based=2:CNhs10636
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10030
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10030
 |name=retina, adult, pool1
 |namespace=FANTOM5
@@ Line 44: / Line 62: @@
 |profile_cagescan=NCig10017,,,
 |profile_hcage=CNhs10636,LSID657,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=101
 |rna_catalog_number=Cat:636579
@@ Line 56: / Line 77: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=101E3
+|rna_tube_id=1.01E+05
 |rna_weight_ug=25
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 80: / Line 102: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10030-101E3;search_select_hide=table117:FF:10030-101E3
 }}

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FF:10030-101E3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:15, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0