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(Created page with "{{f5samples |id=FF:10026-101D8 |name=testis, adult, pool1 |sample_id=10026 |rna_tube_id=101D8 |rna_box=101 |rna_position=D8 |sample_cell_lot=NA |sample_cell_catalog=NA...")
 
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{{f5samples
{{f5samples
|id=FF:10026-101D8
|DRA_sample_Accession=CAGE@SAMD00005861
|name=testis, adult, pool1
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005861
|sample_id=10026
|HumanCAGEScanFiles=NCig10016;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/testis%252c%2520adult%252c%2520pool1.NCig10016.10026-101D8.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/testis%252c%2520adult%252c%2520pool1.NCig10016.10026-101D8.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/testis%252c%2520adult%252c%2520pool1.NCig10016.10026-101D8.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/testis%252c%2520adult%252c%2520pool1.NCig10016.10026-101D8.hg19.GCTATA.pairs.bed.gz
|rna_tube_id=101D8
|accession_numbers=CAGE;DRX008739;DRR009611;DRZ001036;DRZ002421;DRZ012386;DRZ013771
|rna_box=101
|accession_numbers_RNASeq=RNA-Seq;DRX057114;DRR062873;DRZ007949
|rna_position=D8
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000473,UBERON:0000991,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003101,UBERON:0000079
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_company=Ambion
|rna_lot_number=0910061 -17
|rna_catalog_number=Cat:AM6000 Lot:0910061 -17
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=34,53,86 years old adult
|sample_tissue=testis
|sample_donor(cell lot)=3 pool
|sample_sex=male
|sample_age=
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=normal
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0
|rna_weight_ug=10.00000
|rna_concentration=
|sample_note=
|profile_hcage=CNhs10632,LSID657,release008,COMPLETED
|profile_cagescan=NCig10016,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000079,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000473,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000990,UBERON:0000991,UBERON:0001048,UBERON:0001062,UBERON:0002050,UBERON:0002323,UBERON:0002532,UBERON:0002553,UBERON:0003101,UBERON:0003133,UBERON:0003135,UBERON:0004120,UBERON:0004176,UBERON:0004458,UBERON:0005156,UBERON:0005423,UBERON:0005564,UBERON:0007023,UBERON:0009117,UBERON:0009196
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010026
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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R2F2;;chr19:40503013..40503044,+!p3@ZNF546!1.09!12.81!ZNF546;;chrX:79270245..79270257,+!p1@TBX22!1.09!11.44!TBX22;;chr9:127269661..127269719,-!p1@NR5A1!1.09!11.29!NR5A1;;chr16:79634464..79634493,-!p5@MAF!1.09!11.29!MAF;;chr10:119302232..119302265,+!p1@EMX2!1.09!11.22!EMX2;;chr2:176994408..176994492,+!p1@HOXD8!1.09!11.22!HOXD8;;chrX:131545395..131545413,-!p16@MBNL3!1.09!11.22!MBNL3;;chr6:170871224..170871263,+!p4@TBP!1.09!11.22!TBP;;chr11:65686689..65686700,+!p14@DRAP1!1.08!10.91!DRAP1;;chr6:134273279..134273294,+!p10@TBPL1!1.07!10.84!TBPL1;;chr1:247094628..247094663,-!p5@AHCTF1!1.07!10.84!AHCTF1;;chr19:39390274..39390285,+!p11@NFKBIB!1.07!10.76!NFKBIB;;chr4:26322996..26323031,+!p21@RBPJ!1.07!10.76!RBPJ;;chr15:83952197..83952219,-!p6@BNC1!1.07!10.68!BNC1;;chr9:2015215..2015222,+!p35@SMARCA2!1.06!10.61!SMARCA2;;chr6:170863672..170863698,+!p6@TBP!1.06!10.53!TBP;;chr14:89060786..89060796,+!p11@ZC3H14!1.06!10.53!ZC3H14;;chr1:247313250..247313291,-!p2@ZNF124!1.06!10.46!ZNF124;;chr20:56100179..56100208,-!p1@CTCFL!1.06!10.38!CTCFL;;chr2:27371879..27371907,+!p1@TCF23!1.06!10.38!TCF23;;chrX:131547596..131547609,-!p10@MBNL3!1.05!10.15!MBNL3;;chr22:22863052..22863133,-!p1@ZNF280B!1.04!26.67!ZNF280B;;chrX:103499602..103499617,-!p1@ESX1!1.04!10.00!ESX1;;chr1:202776145..202776171,-!p10@KDM5B!1.04!10.00!KDM5B;;chr19:48076356..48076387,-!p@chr19:48076356..48076387,-!1.04!9.85!ZNF541;;chr9:114287433..114287513,+!p1@ZNF483!1.03!25.69!ZNF483;;chr17:53342311..53342400,+!p1@HLF!1.03!11.06!HLF;;chr5:322733..322758,+!p2@AHRR!1.03!9.70!AHRR;;chr10:135043702..135043729,+!p1@UTF1!1.03!9.62!UTF1;;chr16:79633894..79633954,-!p3@MAF!1.02!18.64!MAF;;chr7:15726243..15726293,-!p2@MEOX2!1.02!9.55!MEOX2;;chr14:89060797..89060808,+!p12@ZC3H14!1.02!9.47!ZC3H14;;chrX:131545273..131545287,-!p17@MBNL3!1.02!9.40!MBNL3;;chr11:130184470..130184533,-!p2@ZBTB44!1.01!25.61!ZBTB44;;chr14:89029323..89029329,+!p4@ZC3H14!1.01!11.75!ZC3H14;;chr3:126076242..126076257,-!p1@KLF15!1.01!11.44!KLF15;;chr11:65686702..65686715,+!p11@DRAP1!1.01!10.38!DRAP1;;chr7:15726296..15726315,-!p1@MEOX2!1.01!9.32!MEOX2;;chr13:45150896..45150927,-!p17@TSC22D1!1.01!9.17!TSC22D1;;chr14:89029308..89029318,+!p3@ZC3H14!1.00!15.31!ZC3H14;;chr4:4291751..4291760,-!p12@LYAR!1.00!9.09!LYAR;;chr19:50529307..50529323,+!p3@ZNF473!1.00!9.09!ZNF473;;chr2:19558373..19558392,-!p1@OSR1!0.99!24.78!OSR1;;chr16:79634595..79634620,-!p2@MAF!0.99!16.29!MAF;;chr1:43147867..43147894,+!p10@YBX1!0.99!8.79!YBX1;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.99!8.71!ZNF676;;chr5:322711..322730,+!p6@AHRR!0.98!8.56!AHRR;;chr5:121465234..121465263,+!p1@ZNF474!0.97!8.41!ZNF474;;chr2:114036488..114036504,-!p1@PAX8!0.97!8.41!PAX8;;chr22:19748231..19748317,+!p1@TBX1!0.97!8.34!TBX1;;chr12:23737534..23737550,-!p11@SOX5!0.97!8.34!SOX5;;chr5:79615816..79615827,+!p1@SPZ1!0.97!8.26!SPZ1;;chr22:41763452..41763466,+!p2@TEF!0.96!8.18!TEF;;chr2:208423840..208423851,+!p10@CREB1!0.96!8.18!CREB1;;chr6:170863699..170863716,+!p8@TBP!0.96!8.11!TBP;;chr17:74137321..74137337,-!p1@FOXJ1!0.96!8.03!FOXJ1;;chr22:22863031..22863050,-!p2@ZNF280B!0.95!7.96!ZNF280B;;chr8:25902876..25902936,-!p1@EBF2!0.95!7.88!EBF2;;chr19:53636125..53636178,-!p1@ZNF415!0.94!22.66!ZNF415;;chr7:44143978..44143989,+!p2@AEBP1!0.94!14.47!AEBP1;;chr11:113930291..113930339,+!p2@ZBTB16!0.94!12.88!ZBTB16;;chr10:21822984..21823023,+!p5@MLLT10!0.94!9.93!MLLT10;;chr12:52437488..52437507,+!p2@NR4A1!0.94!7.81!NR4A1;;chr9:109694916..109694927,+!p13@ZNF462!0.94!7.81!ZNF462;;chr1:26701003..26701014,-!p4@ZNF683!0.94!7.81!ZNF683;;chr9:130954135..130954168,-!p13@CIZ1!0.94!7.73!CIZ1;;chr1:8939265..8939367,-!p5@ENO1!0.93!15.91!ENO1;;chr18:53068911..53068935,-!p4@TCF4!0.93!8.49!TCF4;;chr19:53758167..53758190,-!p3@ZNF677!0.93!7.58!ZNF677;;chr19:38308356..38308378,-!p4@ZNF573!0.93!7.50!ZNF573;;chr1:202736088..202736104,-!p6@KDM5B!0.93!7.43!KDM5B;;chr16:66835480..66835492,-!p1@ENST00000559050!0.93!7.43!CCDC79;;chr18:45935720..45935772,-!p1@ZBTB7C!0.93!7.43!ZBTB7C;;chr1:61548069..61548102,+!p3@NFIA!0.92!18.34!NFIA;;chr2:145277882..145277967,-!p3@ZEB2!0.92!12.81!ZEB2;;chr14:64804818..64804842,-!p3@ESR2!0.92!7.27!ESR2;;chr18:19749386..19749404,+!p2@GATA6!0.91!10.31!GATA6;;chr1:209979467..209979494,-!p1@IRF6!0.91!8.11!IRF6;;chr17:17726892..17726903,-!p6@SREBF1!0.91!8.03!SREBF1;;chr19:16435705..16435726,+!p3@KLF2!0.91!7.20!KLF2;;chr7:148580563..148580580,-!p6@EZH2!0.91!7.20!EZH2;;chr6:28048968..28048983,+!p3@ZNF165!0.91!7.12!ZNF165;;chrX:128657457..128657475,-!p1@SMARCA1!0.90!83.51!SMARCA1;;chr10:35415761..35415800,+!p7@CREM!0.90!18.26!CREM;;chr1:170633348..170633399,+!p2@PRRX1!0.90!9.70!PRRX1;;chr14:24025106..24025172,-!p2@ZFHX2!0.90!9.25!ZFHX2;;chr1:170633262..170633285,+!p3@PRRX1!0.90!8.11!PRRX1;;chr2:208423853..208423865,+!p12@CREB1!0.90!6.97!CREB1;;chr5:157079401..157079413,-!p3@SOX30!0.90!6.97!SOX30;;chr5:132236801..132236846,-!p25@AFF4!0.90!6.90!AFF4;;chr12:52445218..52445237,+!p1@NR4A1!0.89!90.56!NR4A1;;chr15:96874012..96874042,+!p2@NR2F2!0.89!63.96!NR2F2;;chr11:6555489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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000473;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000991;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
|ffid_belonging_in_development=UBERON:0009117,UBERON:0002532,UBERON:0006603,UBERON:0005564,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 44:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/testis%252c%2520adult%252c%2520pool1.CNhs10632.10026-101D8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/testis%252c%2520adult%252c%2520pool1.CNhs10632.10026-101D8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/testis%252c%2520adult%252c%2520pool1.CNhs10632.10026-101D8.hg38.nobarcode.bam
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|id=FF:10026-101D8
|is_a=EFO:0002091;;FF:0010026
|is_obsolete=
|library_id=CNhs10632
|library_id_phase_based=2:CNhs10632
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10026
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10026
|name=testis, adult, pool1
|namespace=FANTOM5
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|profile_cagescan=NCig10016,,,
|profile_hcage=CNhs10632,LSID657,release008,COMPLETED
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|rna_box=101
|rna_catalog_number=Cat:AM6000 Lot:0910061 -17
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0
|rna_lot_number=0910061 -17
|rna_od260/230=
|rna_od260/280=
|rna_position=D8
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=101D8
|rna_weight_ug=10
|rnaseq_library_id=RDhi10056
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Ambion
|sample_description=
|sample_dev_stage=34,53,86 years old adult
|sample_disease=normal
|sample_donor(cell lot)=3 pool
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.38078560916956e-216!GO:0005737;cytoplasm;3.61726086121504e-152!GO:0043226;organelle;1.75993354774438e-151!GO:0043229;intracellular organelle;3.35705156242304e-151!GO:0043231;intracellular membrane-bound organelle;3.00850326949739e-142!GO:0043227;membrane-bound organelle;3.22839442516257e-142!GO:0044422;organelle part;4.25083658127343e-102!GO:0044446;intracellular organelle part;7.98588619115688e-101!GO:0044444;cytoplasmic part;5.559505484873e-90!GO:0032991;macromolecular complex;2.7429071136859e-75!GO:0005515;protein binding;6.26495132489863e-75!GO:0005634;nucleus;2.96026916473907e-64!GO:0043170;macromolecule metabolic process;2.97354219672183e-62!GO:0044238;primary metabolic process;2.25641063513885e-61!GO:0044428;nuclear part;7.34753824595992e-61!GO:0044237;cellular metabolic process;5.08148123411167e-59!GO:0003723;RNA binding;8.79628841907051e-58!GO:0016043;cellular component organization and biogenesis;5.01509840761033e-53!GO:0030529;ribonucleoprotein complex;2.87286580945297e-52!GO:0043233;organelle lumen;9.38366824853494e-49!GO:0031974;membrane-enclosed lumen;9.38366824853494e-49!GO:0019538;protein metabolic process;3.64374279486633e-46!GO:0043234;protein complex;7.34622259509238e-42!GO:0044260;cellular macromolecule metabolic process;7.19216389682547e-41!GO:0044267;cellular protein metabolic process;3.35142615095501e-40!GO:0033036;macromolecule localization;1.34001359321212e-37!GO:0005739;mitochondrion;1.74686812008203e-35!GO:0015031;protein transport;1.63307710464206e-34!GO:0043228;non-membrane-bound organelle;3.57202876368128e-34!GO:0043232;intracellular non-membrane-bound organelle;3.57202876368128e-34!GO:0031981;nuclear lumen;1.49701169004817e-33!GO:0008104;protein localization;2.72023881456762e-33!GO:0046907;intracellular transport;3.70611675449493e-33!GO:0031967;organelle envelope;7.86207396309356e-33!GO:0031975;envelope;1.1979236101411e-32!GO:0022607;cellular component assembly;1.366419350022e-32!GO:0043283;biopolymer metabolic process;1.76503485249726e-32!GO:0006996;organelle organization and biogenesis;1.80979126855271e-32!GO:0045184;establishment of protein localization;1.80979126855271e-32!GO:0065003;macromolecular complex assembly;2.55387727292242e-32!GO:0016071;mRNA metabolic process;1.72762533317333e-30!GO:0031090;organelle membrane;2.39552360926498e-30!GO:0005840;ribosome;6.94122135858134e-29!GO:0006396;RNA processing;4.90908220085898e-28!GO:0006412;translation;9.48475560410754e-28!GO:0005829;cytosol;4.94021188345343e-27!GO:0044429;mitochondrial part;8.4639763917907e-27!GO:0008380;RNA splicing;9.69962817889766e-27!GO:0003735;structural constituent of ribosome;5.85701724827142e-25!GO:0006886;intracellular protein transport;1.07791474549332e-24!GO:0006397;mRNA processing;1.24137804109481e-24!GO:0005654;nucleoplasm;3.41961225735849e-23!GO:0051649;establishment of cellular localization;4.49514131057079e-23!GO:0033279;ribosomal subunit;5.27653526840334e-23!GO:0051641;cellular localization;5.77883157035073e-23!GO:0007049;cell cycle;9.5228208075309e-22!GO:0010467;gene expression;1.17879878238372e-21!GO:0006259;DNA metabolic process;1.53659492010285e-19!GO:0005740;mitochondrial envelope;2.36966175556814e-19!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.76635816744254e-19!GO:0031966;mitochondrial membrane;2.76635816744254e-19!GO:0008134;transcription factor binding;3.71906387785358e-19!GO:0006512;ubiquitin cycle;4.52620720201364e-19!GO:0005681;spliceosome;9.04323494171839e-19!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.44130172629329e-18!GO:0044451;nucleoplasm part;2.82240073751514e-18!GO:0000166;nucleotide binding;6.4028401683594e-18!GO:0044265;cellular macromolecule catabolic process;1.04409819624196e-17!GO:0009059;macromolecule biosynthetic process;4.02643192589434e-17!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.04290654724164e-17!GO:0022402;cell cycle process;1.74059204790541e-16!GO:0006457;protein folding;2.24772820115251e-16!GO:0016874;ligase activity;6.39605460402433e-16!GO:0019866;organelle inner membrane;6.62006787394791e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.47123609944031e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.54000870509204e-15!GO:0006119;oxidative phosphorylation;1.5421952512096e-15!GO:0048770;pigment granule;1.99435022034393e-15!GO:0042470;melanosome;1.99435022034393e-15!GO:0019941;modification-dependent protein catabolic process;2.56926372332209e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.56926372332209e-15!GO:0022618;protein-RNA complex assembly;3.34982319771498e-15!GO:0005635;nuclear envelope;5.0524604845413e-15!GO:0005743;mitochondrial inner membrane;5.51355544170678e-15!GO:0009058;biosynthetic process;6.67628675990082e-15!GO:0044257;cellular protein catabolic process;7.23083377169171e-15!GO:0051276;chromosome organization and biogenesis;7.859926055702e-15!GO:0003676;nucleic acid binding;1.04402967578924e-14!GO:0044445;cytosolic part;1.66521520088579e-14!GO:0043412;biopolymer modification;1.7844204245656e-14!GO:0015630;microtubule cytoskeleton;2.67455595965172e-14!GO:0006323;DNA packaging;3.59783540854749e-14!GO:0044249;cellular biosynthetic process;4.17027641188826e-14!GO:0006464;protein modification process;4.42017459906216e-14!GO:0051082;unfolded protein binding;5.85075411343846e-14!GO:0043687;post-translational protein modification;7.74325779548988e-14!GO:0031965;nuclear membrane;1.30893069200761e-13!GO:0006913;nucleocytoplasmic transport;2.91461508596241e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;2.91472036202121e-13!GO:0009057;macromolecule catabolic process;3.86151795965402e-13!GO:0006605;protein targeting;5.72830789905182e-13!GO:0003712;transcription cofactor activity;8.64381251925993e-13!GO:0005694;chromosome;1.02015104703266e-12!GO:0015934;large ribosomal subunit;1.22562736103504e-12!GO:0051169;nuclear transport;1.22562736103504e-12!GO:0008565;protein transporter activity;1.83363401806535e-12!GO:0044453;nuclear membrane part;3.61776885022289e-12!GO:0005643;nuclear pore;4.6774773033699e-12!GO:0048232;male gamete generation;6.29242233725803e-12!GO:0007283;spermatogenesis;6.29242233725803e-12!GO:0043285;biopolymer catabolic process;6.86591411531172e-12!GO:0016462;pyrophosphatase activity;6.92397198171864e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.87855451886115e-12!GO:0008135;translation factor activity, nucleic acid binding;8.59729690494319e-12!GO:0044427;chromosomal part;9.11335456757683e-12!GO:0044455;mitochondrial membrane part;1.0486871000767e-11!GO:0016817;hydrolase activity, acting on acid anhydrides;1.07985650447943e-11!GO:0017111;nucleoside-triphosphatase activity;1.33856658653449e-11!GO:0050657;nucleic acid transport;1.67386269144621e-11!GO:0051236;establishment of RNA localization;1.67386269144621e-11!GO:0050658;RNA transport;1.67386269144621e-11!GO:0019953;sexual reproduction;2.02988381863758e-11!GO:0030163;protein catabolic process;2.05596273931331e-11!GO:0032553;ribonucleotide binding;2.05596273931331e-11!GO:0032555;purine ribonucleotide binding;2.05596273931331e-11!GO:0015935;small ribosomal subunit;2.11420861934778e-11!GO:0016604;nuclear body;2.16360385092139e-11!GO:0012505;endomembrane system;2.20428442319638e-11!GO:0006403;RNA localization;2.77720338313783e-11!GO:0000502;proteasome complex (sensu Eukaryota);2.85886096194635e-11!GO:0016192;vesicle-mediated transport;4.38799176945068e-11!GO:0005746;mitochondrial respiratory chain;4.67493740853473e-11!GO:0048193;Golgi vesicle transport;5.3307877901632e-11!GO:0007276;gamete generation;5.95084625360306e-11!GO:0017076;purine nucleotide binding;6.59988829784124e-11!GO:0022403;cell cycle phase;7.21135040155087e-11!GO:0044248;cellular catabolic process;8.86233939680057e-11!GO:0005794;Golgi apparatus;2.50062428001149e-10!GO:0006446;regulation of translational initiation;3.07050210070296e-10!GO:0005730;nucleolus;3.18216476279192e-10!GO:0050136;NADH dehydrogenase (quinone) activity;3.18216476279192e-10!GO:0003954;NADH dehydrogenase activity;3.18216476279192e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.18216476279192e-10!GO:0016607;nuclear speck;3.65605288097265e-10!GO:0016881;acid-amino acid ligase activity;4.16605788026764e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.69653952549729e-10!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.87288226565165e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.14680227617134e-10!GO:0006461;protein complex assembly;6.43083452471579e-10!GO:0019787;small conjugating protein ligase activity;6.74790461574968e-10!GO:0000785;chromatin;7.35275440935346e-10!GO:0000278;mitotic cell cycle;7.73648897112764e-10!GO:0051028;mRNA transport;1.09984802880615e-09!GO:0006413;translational initiation;1.40678426671576e-09!GO:0046930;pore complex;1.51293405893491e-09!GO:0031980;mitochondrial lumen;1.51317961337806e-09!GO:0005759;mitochondrial matrix;1.51317961337806e-09!GO:0065004;protein-DNA complex assembly;1.63938332719476e-09!GO:0008639;small protein conjugating enzyme activity;1.70567520217809e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.05470050168121e-09!GO:0004842;ubiquitin-protein ligase activity;2.25741147950322e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;3.00966154888814e-09!GO:0000375;RNA splicing, via transesterification reactions;3.00966154888814e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.00966154888814e-09!GO:0005783;endoplasmic reticulum;3.17719142545451e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.26701410025512e-09!GO:0005524;ATP binding;4.07965151112889e-09!GO:0006366;transcription from RNA polymerase II promoter;4.429034512875e-09!GO:0051301;cell division;5.21095690775567e-09!GO:0032559;adenyl ribonucleotide binding;5.38088434182162e-09!GO:0006333;chromatin assembly or disassembly;5.84150662352243e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.97585033356969e-09!GO:0016070;RNA metabolic process;7.00317649778512e-09!GO:0000279;M phase;7.66745199814528e-09!GO:0006793;phosphorus metabolic process;1.17209033014906e-08!GO:0006796;phosphate metabolic process;1.17209033014906e-08!GO:0042775;organelle ATP synthesis coupled electron transport;1.1919297325628e-08!GO:0042773;ATP synthesis coupled electron transport;1.1919297325628e-08!GO:0030964;NADH dehydrogenase complex (quinone);1.50122491836591e-08!GO:0045271;respiratory chain complex I;1.50122491836591e-08!GO:0005747;mitochondrial respiratory chain complex I;1.50122491836591e-08!GO:0030554;adenyl nucleotide binding;2.16453353406756e-08!GO:0048523;negative regulation of cellular process;2.65269365689002e-08!GO:0005773;vacuole;2.99906745640957e-08!GO:0004386;helicase activity;3.00626458749815e-08!GO:0007010;cytoskeleton organization and biogenesis;3.07398613345157e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.6910143158174e-08!GO:0051246;regulation of protein metabolic process;4.67433280469934e-08!GO:0003713;transcription coactivator activity;4.91021025288389e-08!GO:0005813;centrosome;5.15611328369376e-08!GO:0017038;protein import;6.01652905755472e-08!GO:0000323;lytic vacuole;6.08238632408758e-08!GO:0005764;lysosome;6.08238632408758e-08!GO:0003743;translation initiation factor activity;6.6302506788219e-08!GO:0005761;mitochondrial ribosome;7.75428557554817e-08!GO:0000313;organellar ribosome;7.75428557554817e-08!GO:0008026;ATP-dependent helicase activity;9.80010077194104e-08!GO:0016310;phosphorylation;1.08236083333528e-07!GO:0005815;microtubule organizing center;1.41791727649134e-07!GO:0030036;actin cytoskeleton organization and biogenesis;1.42217302513989e-07!GO:0031988;membrane-bound vesicle;2.17488827563143e-07!GO:0007067;mitosis;2.18362947719733e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.2596447088272e-07!GO:0006974;response to DNA damage stimulus;2.37504667135153e-07!GO:0000087;M phase of mitotic cell cycle;2.55998168149181e-07!GO:0005793;ER-Golgi intermediate compartment;2.59228099882627e-07!GO:0031982;vesicle;2.86005942586324e-07!GO:0007286;spermatid development;3.53693591665242e-07!GO:0016023;cytoplasmic membrane-bound vesicle;3.83098625455241e-07!GO:0016887;ATPase activity;3.85230095080758e-07!GO:0031497;chromatin assembly;4.0741025287104e-07!GO:0006334;nucleosome assembly;4.19507325634118e-07!GO:0000786;nucleosome;4.58397397276553e-07!GO:0065002;intracellular protein transport across a membrane;4.90969949176893e-07!GO:0051186;cofactor metabolic process;5.02882335090706e-07!GO:0016568;chromatin modification;5.06709620107442e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.23904276450211e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.28514856142117e-07!GO:0031410;cytoplasmic vesicle;5.48468234308932e-07!GO:0048515;spermatid differentiation;8.18005856427975e-07!GO:0005768;endosome;8.39414944976664e-07!GO:0042623;ATPase activity, coupled;9.07250871362184e-07!GO:0051726;regulation of cell cycle;9.42008088471247e-07!GO:0051170;nuclear import;9.70198327664798e-07!GO:0006606;protein import into nucleus;9.91027374737276e-07!GO:0008092;cytoskeletal protein binding;1.09122359070369e-06!GO:0030029;actin filament-based process;1.21771509656373e-06!GO:0016563;transcription activator activity;1.24306040439689e-06!GO:0048519;negative regulation of biological process;1.37949197080574e-06!GO:0000074;regulation of progression through cell cycle;1.38924836330338e-06!GO:0009055;electron carrier activity;1.44208616988344e-06!GO:0016564;transcription repressor activity;1.71215167645983e-06!GO:0031968;organelle outer membrane;2.03945779754997e-06!GO:0005741;mitochondrial outer membrane;2.19190621143199e-06!GO:0048475;coated membrane;2.21019328274838e-06!GO:0030117;membrane coat;2.21019328274838e-06!GO:0051168;nuclear export;2.49222400872906e-06!GO:0015986;ATP synthesis coupled proton transport;2.5195605072728e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.5195605072728e-06!GO:0044432;endoplasmic reticulum part;2.54060707826926e-06!GO:0009060;aerobic respiration;2.93373080037106e-06!GO:0019867;outer membrane;3.97563977452746e-06!GO:0031324;negative regulation of cellular metabolic process;3.97563977452746e-06!GO:0003724;RNA helicase activity;4.07146895199551e-06!GO:0006888;ER to Golgi vesicle-mediated transport;4.62117128125847e-06!GO:0045333;cellular respiration;5.38840428681642e-06!GO:0045786;negative regulation of progression through cell cycle;5.46148700659141e-06!GO:0000151;ubiquitin ligase complex;6.53201848934411e-06!GO:0031252;leading edge;6.71308692297591e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.82449394092282e-06!GO:0006732;coenzyme metabolic process;7.53882732173529e-06!GO:0009259;ribonucleotide metabolic process;7.63791910744304e-06!GO:0005874;microtubule;7.87136590240092e-06!GO:0006281;DNA repair;8.45853707317103e-06!GO:0012501;programmed cell death;8.81067388204184e-06!GO:0009056;catabolic process;9.33421606867181e-06!GO:0009719;response to endogenous stimulus;1.13055056540201e-05!GO:0008654;phospholipid biosynthetic process;1.23776985842964e-05!GO:0043566;structure-specific DNA binding;1.23797136177931e-05!GO:0032446;protein modification by small protein conjugation;1.4294134057738e-05!GO:0030120;vesicle coat;1.5251685445099e-05!GO:0030662;coated vesicle membrane;1.5251685445099e-05!GO:0009892;negative regulation of metabolic process;1.59263969461833e-05!GO:0006915;apoptosis;1.68600945475069e-05!GO:0008219;cell death;1.81683212013759e-05!GO:0016265;death;1.81683212013759e-05!GO:0005667;transcription factor complex;1.94411720219712e-05!GO:0000245;spliceosome assembly;1.94411720219712e-05!GO:0019829;cation-transporting ATPase activity;1.9959416964457e-05!GO:0009150;purine ribonucleotide metabolic process;2.02935320434398e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.03557451957642e-05!GO:0009144;purine nucleoside triphosphate metabolic process;2.03557451957642e-05!GO:0009199;ribonucleoside triphosphate metabolic process;2.19375676971964e-05!GO:0006163;purine nucleotide metabolic process;2.31686999676777e-05!GO:0008361;regulation of cell size;2.41114532114988e-05!GO:0003714;transcription corepressor activity;2.94920337193411e-05!GO:0031072;heat shock protein binding;2.98811311939569e-05!GO:0046034;ATP metabolic process;3.09223045957377e-05!GO:0016567;protein ubiquitination;3.09223045957377e-05!GO:0005819;spindle;3.52082331257038e-05!GO:0050794;regulation of cellular process;3.54257452471425e-05!GO:0016049;cell growth;3.61641913849775e-05!GO:0051427;hormone receptor binding;3.87561673788485e-05!GO:0009141;nucleoside triphosphate metabolic process;3.87561673788485e-05!GO:0006099;tricarboxylic acid cycle;3.90051032747538e-05!GO:0046356;acetyl-CoA catabolic process;3.90051032747538e-05!GO:0009260;ribonucleotide biosynthetic process;4.44458518614933e-05!GO:0008186;RNA-dependent ATPase activity;4.53580763563553e-05!GO:0016481;negative regulation of transcription;4.71853527079716e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.7563581689958e-05!GO:0044440;endosomal part;4.91576188991433e-05!GO:0010008;endosome membrane;4.91576188991433e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.70381779359274e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.70381779359274e-05!GO:0009142;nucleoside triphosphate biosynthetic process;6.20970962061716e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.20970962061716e-05!GO:0003729;mRNA binding;6.46823925879948e-05!GO:0003697;single-stranded DNA binding;6.80825912882524e-05!GO:0019899;enzyme binding;6.9102142729404e-05!GO:0006613;cotranslational protein targeting to membrane;6.99608573585469e-05!GO:0030532;small nuclear ribonucleoprotein complex;7.49270927277472e-05!GO:0035257;nuclear hormone receptor binding;7.52902635021352e-05!GO:0006754;ATP biosynthetic process;7.54887233451369e-05!GO:0006753;nucleoside phosphate metabolic process;7.54887233451369e-05!GO:0004674;protein serine/threonine kinase activity;7.88697331130833e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.0131611393186e-05!GO:0015078;hydrogen ion transmembrane transporter activity;8.49351010114001e-05!GO:0030133;transport vesicle;9.27694685899107e-05!GO:0009152;purine ribonucleotide biosynthetic process;9.40007086635308e-05!GO:0003924;GTPase activity;9.49284361098747e-05!GO:0006164;purine nucleotide biosynthetic process;0.00010610353823209!GO:0001558;regulation of cell growth;0.000107767110030092!GO:0006916;anti-apoptosis;0.000110224832805507!GO:0043623;cellular protein complex assembly;0.000111718995067551!GO:0005839;proteasome core complex (sensu Eukaryota);0.000117935873208107!GO:0016469;proton-transporting two-sector ATPase complex;0.000123238604885969!GO:0043069;negative regulation of programmed cell death;0.000130708014988347!GO:0004004;ATP-dependent RNA helicase activity;0.000142819227869011!GO:0009109;coenzyme catabolic process;0.000145402957076751!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000171821067885521!GO:0005770;late endosome;0.000193752660834869!GO:0005525;GTP binding;0.000193839702234028!GO:0043066;negative regulation of apoptosis;0.000204637722004041!GO:0006405;RNA export from nucleus;0.000219664953711544!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000235161666182712!GO:0051187;cofactor catabolic process;0.000243272741928875!GO:0042254;ribosome biogenesis and assembly;0.000253953888841652!GO:0005856;cytoskeleton;0.000264249050650455!GO:0005789;endoplasmic reticulum membrane;0.000275799972115689!GO:0006084;acetyl-CoA metabolic process;0.000292467937907021!GO:0000059;protein import into nucleus, docking;0.000305137803946868!GO:0051789;response to protein stimulus;0.000320989319500575!GO:0006986;response to unfolded protein;0.000320989319500575!GO:0005798;Golgi-associated vesicle;0.000401590379444737!GO:0045259;proton-transporting ATP synthase complex;0.000452732312399517!GO:0045892;negative regulation of transcription, DNA-dependent;0.000469678992295001!GO:0006260;DNA replication;0.000473368092154103!GO:0006007;glucose catabolic process;0.000484200844470262!GO:0030518;steroid hormone receptor signaling pathway;0.000535191592811147!GO:0016044;membrane organization and biogenesis;0.000553004040563464!GO:0006607;NLS-bearing substrate import into nucleus;0.000583313057899197!GO:0007017;microtubule-based process;0.000618106792843962!GO:0003779;actin binding;0.000721196183507957!GO:0048471;perinuclear region of cytoplasm;0.000726772270255175!GO:0050789;regulation of biological process;0.000775833074017332!GO:0005048;signal sequence binding;0.000862896680364881!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000876650067359937!GO:0004298;threonine endopeptidase activity;0.000903648354491273!GO:0005791;rough endoplasmic reticulum;0.00102639196608618!GO:0015631;tubulin binding;0.00104156652572266!GO:0046474;glycerophospholipid biosynthetic process;0.00112854609521543!GO:0046467;membrane lipid biosynthetic process;0.00113614348810102!GO:0016197;endosome transport;0.00123162947690995!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00125330326666026!GO:0008250;oligosaccharyl transferase complex;0.00127099495475175!GO:0044431;Golgi apparatus part;0.00134884439865732!GO:0030118;clathrin coat;0.00137660588421609!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00137660588421609!GO:0015002;heme-copper terminal oxidase activity;0.00137660588421609!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00137660588421609!GO:0004129;cytochrome-c oxidase activity;0.00137660588421609!GO:0015980;energy derivation by oxidation of organic compounds;0.00140918934848154!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00141370844969816!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00143172711367773!GO:0005875;microtubule associated complex;0.00148878012247732!GO:0030867;rough endoplasmic reticulum membrane;0.00150482602802864!GO:0030027;lamellipodium;0.00153035905598008!GO:0003702;RNA polymerase II transcription factor activity;0.0015960161936439!GO:0035258;steroid hormone receptor binding;0.00163650859010153!GO:0006402;mRNA catabolic process;0.00165631267291615!GO:0032561;guanyl ribonucleotide binding;0.00166106085725099!GO:0019001;guanyl nucleotide binding;0.00166106085725099!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00166764449034052!GO:0004812;aminoacyl-tRNA ligase activity;0.00166764449034052!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00166764449034052!GO:0005669;transcription factor TFIID complex;0.00175860527564041!GO:0016301;kinase activity;0.00178218192635329!GO:0019843;rRNA binding;0.00188293384568114!GO:0016740;transferase activity;0.0019165703054382!GO:0006612;protein targeting to membrane;0.00201154360578563!GO:0030522;intracellular receptor-mediated signaling pathway;0.00204373400759979!GO:0051128;regulation of cellular component organization and biogenesis;0.00212125659630735!GO:0008139;nuclear localization sequence binding;0.00223114887031777!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00223989092653379!GO:0043488;regulation of mRNA stability;0.00226490515600155!GO:0043487;regulation of RNA stability;0.00226490515600155!GO:0045045;secretory pathway;0.00246486274423375!GO:0007050;cell cycle arrest;0.00251783076956971!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00253399317383797!GO:0051920;peroxiredoxin activity;0.00256733241795892!GO:0006406;mRNA export from nucleus;0.00258176833287876!GO:0005769;early endosome;0.00316974784862492!GO:0043021;ribonucleoprotein binding;0.00316974784862492!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00324275736886671!GO:0043038;amino acid activation;0.00329348450125979!GO:0006418;tRNA aminoacylation for protein translation;0.00329348450125979!GO:0043039;tRNA aminoacylation;0.00329348450125979!GO:0008154;actin polymerization and/or depolymerization;0.00330940653935969!GO:0005788;endoplasmic reticulum lumen;0.0034357283400646!GO:0016859;cis-trans isomerase activity;0.00353409862874372!GO:0003690;double-stranded DNA binding;0.00355248881226255!GO:0004576;oligosaccharyl transferase activity;0.00373098685732631!GO:0008286;insulin receptor signaling pathway;0.00374764424418266!GO:0006650;glycerophospholipid metabolic process;0.00376503280493358!GO:0051252;regulation of RNA metabolic process;0.00376865172648146!GO:0009566;fertilization;0.00376865172648146!GO:0006414;translational elongation;0.00390220014709416!GO:0005762;mitochondrial large ribosomal subunit;0.00410845199436131!GO:0000315;organellar large ribosomal subunit;0.00410845199436131!GO:0006352;transcription initiation;0.00425699888455878!GO:0018196;peptidyl-asparagine modification;0.00430741049936621!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00430741049936621!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00439435916903186!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00439435916903186!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00439435916903186!GO:0005885;Arp2/3 protein complex;0.00440233927246836!GO:0016363;nuclear matrix;0.00463959226955996!GO:0030521;androgen receptor signaling pathway;0.00480068065787186!GO:0033116;ER-Golgi intermediate compartment membrane;0.00483447488606571!GO:0045454;cell redox homeostasis;0.00496216775092562!GO:0031901;early endosome membrane;0.00496216775092562!GO:0042981;regulation of apoptosis;0.00496216775092562!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00509377864145705!GO:0004667;prostaglandin-D synthase activity;0.00509377864145705!GO:0050802;circadian sleep/wake cycle, sleep;0.00509377864145705!GO:0022410;circadian sleep/wake cycle process;0.00509377864145705!GO:0042749;regulation of circadian sleep/wake cycle;0.00509377864145705!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00509377864145705!GO:0043067;regulation of programmed cell death;0.00530902051559151!GO:0030041;actin filament polymerization;0.00542918048480843!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00558803411422116!GO:0007338;single fertilization;0.00591113949055046!GO:0005905;coated pit;0.00625192382820671!GO:0030132;clathrin coat of coated pit;0.00634946518212089!GO:0006338;chromatin remodeling;0.00675246718367873!GO:0006611;protein export from nucleus;0.00686040881187771!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00688360067917145!GO:0006891;intra-Golgi vesicle-mediated transport;0.00700820937122692!GO:0031123;RNA 3'-end processing;0.00716574687102617!GO:0031124;mRNA 3'-end processing;0.00732529500213756!GO:0051087;chaperone binding;0.00760142583123362!GO:0006752;group transfer coenzyme metabolic process;0.0078636172006924!GO:0006364;rRNA processing;0.00793443491905405!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00808137090442575!GO:0007051;spindle organization and biogenesis;0.00808137090442575!GO:0008610;lipid biosynthetic process;0.0081697474057563!GO:0006950;response to stress;0.00859282269196428!GO:0016779;nucleotidyltransferase activity;0.00864358916219448!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00870405418333762!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00882327729387154!GO:0019222;regulation of metabolic process;0.00890478793326109!GO:0006096;glycolysis;0.00930051946123518!GO:0035042;fertilization, exchange of chromosomal proteins;0.00935054721107016!GO:0035041;sperm chromatin decondensation;0.00935054721107016!GO:0007059;chromosome segregation;0.00960121247296042!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00960485511329377!GO:0033673;negative regulation of kinase activity;0.00960485511329377!GO:0006469;negative regulation of protein kinase activity;0.00960485511329377!GO:0048487;beta-tubulin binding;0.00960485511329377!GO:0008287;protein serine/threonine phosphatase complex;0.0102582627270683!GO:0006643;membrane lipid metabolic process;0.0107101932055619!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0109144148119362!GO:0006376;mRNA splice site selection;0.010951979436918!GO:0000389;nuclear mRNA 3'-splice site recognition;0.010951979436918!GO:0016584;nucleosome positioning;0.0110935066334067!GO:0016072;rRNA metabolic process;0.0111006908699115!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0111093874112722!GO:0051329;interphase of mitotic cell cycle;0.0111469876289912!GO:0046489;phosphoinositide biosynthetic process;0.0117167807856444!GO:0016126;sterol biosynthetic process;0.0117508669132912!GO:0008234;cysteine-type peptidase activity;0.0117750044488012!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0120113454843535!GO:0007005;mitochondrion organization and biogenesis;0.0120114855370683!GO:0008180;signalosome;0.0123883564789875!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0123986605535714!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0124232139098095!GO:0017166;vinculin binding;0.0125397888048311!GO:0030663;COPI coated vesicle membrane;0.0127482690831878!GO:0030126;COPI vesicle coat;0.0127482690831878!GO:0001726;ruffle;0.01281150945!GO:0005832;chaperonin-containing T-complex;0.0129752541656263!GO:0051325;interphase;0.0131763895996451!GO:0022890;inorganic cation transmembrane transporter activity;0.0135763751881346!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.01392478939586!GO:0003746;translation elongation factor activity;0.014039132327408!GO:0004364;glutathione transferase activity;0.0145740143136603!GO:0048500;signal recognition particle;0.0145740143136603!GO:0000123;histone acetyltransferase complex;0.0147335290355009!GO:0006401;RNA catabolic process;0.0147335290355009!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0151139015285078!GO:0040008;regulation of growth;0.0153635054167078!GO:0030384;phosphoinositide metabolic process;0.016469567186534!GO:0050681;androgen receptor binding;0.0165662741870619!GO:0030134;ER to Golgi transport vesicle;0.0168302932996677!GO:0030127;COPII vesicle coat;0.0168488441295096!GO:0012507;ER to Golgi transport vesicle membrane;0.0168488441295096!GO:0045792;negative regulation of cell size;0.0169311077770079!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0169340119895531!GO:0006644;phospholipid metabolic process;0.0181680737439265!GO:0006383;transcription from RNA polymerase III promoter;0.0186670407782083!GO:0032940;secretion by cell;0.0198464836570099!GO:0044454;nuclear chromosome part;0.0198464836570099!GO:0030137;COPI-coated vesicle;0.0199031207844999!GO:0016251;general RNA polymerase II transcription factor activity;0.0207782531129508!GO:0051188;cofactor biosynthetic process;0.0211112996757632!GO:0005862;muscle thin filament tropomyosin;0.0219995039640552!GO:0030658;transport vesicle membrane;0.0220668581652716!GO:0046365;monosaccharide catabolic process;0.0221300242090914!GO:0007264;small GTPase mediated signal transduction;0.02230656395593!GO:0001669;acrosome;0.02230656395593!GO:0051287;NAD binding;0.0224487420892243!GO:0030119;AP-type membrane coat adaptor complex;0.0224774934120133!GO:0042802;identical protein binding;0.0226178349662062!GO:0030308;negative regulation of cell growth;0.0227516211632281!GO:0000922;spindle pole;0.022767125535873!GO:0006417;regulation of translation;0.022767125535873!GO:0019320;hexose catabolic process;0.0232502896986996!GO:0030286;dynein complex;0.0235327749318764!GO:0051348;negative regulation of transferase activity;0.0235327749318764!GO:0000314;organellar small ribosomal subunit;0.0236323364993236!GO:0005763;mitochondrial small ribosomal subunit;0.0236323364993236!GO:0005869;dynactin complex;0.0245857935623323!GO:0009117;nucleotide metabolic process;0.0247294418565804!GO:0019783;small conjugating protein-specific protease activity;0.0253524095951565!GO:0008073;ornithine decarboxylase inhibitor activity;0.0258688125833274!GO:0016787;hydrolase activity;0.0260980901459594!GO:0009108;coenzyme biosynthetic process;0.0266122241171216!GO:0008494;translation activator activity;0.0266649532614418!GO:0019208;phosphatase regulator activity;0.0266884730234912!GO:0043189;H4/H2A histone acetyltransferase complex;0.0267561542761933!GO:0016744;transferase activity, transferring aldehyde or ketonic groups;0.0269460007524636!GO:0015629;actin cytoskeleton;0.0270630835179182!GO:0000139;Golgi membrane;0.0271024367082214!GO:0008147;structural constituent of bone;0.0281966654546777!GO:0004672;protein kinase activity;0.0281966654546777!GO:0006892;post-Golgi vesicle-mediated transport;0.028528194151457!GO:0031625;ubiquitin protein ligase binding;0.0286958616770533!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0286958616770533!GO:0045047;protein targeting to ER;0.0286958616770533!GO:0003725;double-stranded RNA binding;0.0294054477877371!GO:0030131;clathrin adaptor complex;0.0296849011864749!GO:0000082;G1/S transition of mitotic cell cycle;0.029815391135395!GO:0044275;cellular carbohydrate catabolic process;0.0305523981637026!GO:0008143;poly(A) binding;0.0311166302983799!GO:0045893;positive regulation of transcription, DNA-dependent;0.0312316354867367!GO:0005684;U2-dependent spliceosome;0.031369887209135!GO:0006302;double-strand break repair;0.031369887209135!GO:0031902;late endosome membrane;0.031920031354293!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0323671388675592!GO:0006944;membrane fusion;0.0323708840827939!GO:0032984;macromolecular complex disassembly;0.0324100064397199!GO:0006337;nucleosome disassembly;0.0325907878532775!GO:0031498;chromatin disassembly;0.0325907878532775!GO:0006979;response to oxidative stress;0.0327607108780336!GO:0046488;phosphatidylinositol metabolic process;0.032767608893361!GO:0051235;maintenance of localization;0.0330952339856138!GO:0004843;ubiquitin-specific protease activity;0.0339759123874013!GO:0008017;microtubule binding;0.0341690068711381!GO:0030880;RNA polymerase complex;0.0349278933443354!GO:0006595;polyamine metabolic process;0.0351134030716514!GO:0008022;protein C-terminus binding;0.0363573829434739!GO:0043130;ubiquitin binding;0.036531572968318!GO:0032182;small conjugating protein binding;0.036531572968318!GO:0046164;alcohol catabolic process;0.0376814394286864!GO:0005784;translocon complex;0.0387198701319964!GO:0006509;membrane protein ectodomain proteolysis;0.0392549758029876!GO:0033619;membrane protein proteolysis;0.0392549758029876!GO:0003711;transcription elongation regulator activity;0.0404910548311118!GO:0007243;protein kinase cascade;0.0418439193759905!GO:0000228;nuclear chromosome;0.0420051003465118!GO:0003899;DNA-directed RNA polymerase activity;0.0420051003465118!GO:0051540;metal cluster binding;0.0420051003465118!GO:0051536;iron-sulfur cluster binding;0.0420051003465118!GO:0051321;meiotic cell cycle;0.0421110253984319!GO:0006399;tRNA metabolic process;0.0425222851619381!GO:0001725;stress fiber;0.0425222851619381!GO:0032432;actin filament bundle;0.0425222851619381!GO:0001666;response to hypoxia;0.0425222851619381!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0425974367962376!GO:0033043;regulation of organelle organization and biogenesis;0.0425974367962376!GO:0016311;dephosphorylation;0.0426080685126153!GO:0016615;malate dehydrogenase activity;0.0428334371671615!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0428334371671615!GO:0043022;ribosome binding;0.0433811851567128!GO:0005868;cytoplasmic dynein complex;0.0434703499265141!GO:0004221;ubiquitin thiolesterase activity;0.0442597003686201!GO:0035035;histone acetyltransferase binding;0.0455281175681201!GO:0006997;nuclear organization and biogenesis;0.0461440813958912!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0461440813958912!GO:0042026;protein refolding;0.0464425283279693!GO:0007289;spermatid nuclear differentiation;0.0475254332959955!GO:0044437;vacuolar part;0.0482379798984227!GO:0006749;glutathione metabolic process;0.0483652190355855!GO:0031461;cullin-RING ubiquitin ligase complex;0.0491063149979342!GO:0043087;regulation of GTPase activity;0.0491063149979342!GO:0008097;5S rRNA binding;0.0499968034551099
|sample_id=10026
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=testis
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10026-101D8;search_select_hide=table117:FF:10026-101D8
}}
}}

Latest revision as of 12:15, 3 June 2020

Name:testis, adult, pool1
Species:Human (Homo sapiens)
Library ID:CNhs10632
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuetestis
dev stage34,53,86 years old adult
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyAmbion
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number0910061 -17
catalog numberCat:AM6000 Lot:0910061 -17
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005861
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10632 CAGE DRX008739 DRR009611
Accession ID Hg19

Library idBAMCTSS
CNhs10632 DRZ001036 DRZ002421
Accession ID Hg38

Library idBAMCTSS
CNhs10632 DRZ012386 DRZ013771
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10016downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005861
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10056 RNA-Seq DRX057114 DRR062873
Accession ID Hg19

Library idBAMCTSS
RDhi10056 DRZ007949


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0.761
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.062
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.15
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.805
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.016
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.255
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0317
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0317
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.226
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0672
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.189
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.0317
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0158
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.115
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0.115
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.14
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0.0317
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.089
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.16
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.42
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0.0317
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.057
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.0317
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.089
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0.0613
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70.0613
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0978
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0317
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.184
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.255
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.289
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0317
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0613
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0317
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0549
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.0317
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.0317
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0283
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0451
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.067
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0613
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.0613
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.185
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.089
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.226
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0613
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.0317
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0317
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.151
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330.089
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.185
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.0613
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.115
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.102
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0143
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10632

Jaspar motifP-value
MA0002.20.00752
MA0003.10.477
MA0004.10.854
MA0006.10.997
MA0007.10.575
MA0009.10.505
MA0014.10.919
MA0017.10.534
MA0018.21.62795e-4
MA0019.10.00382
MA0024.10.126
MA0025.10.725
MA0027.10.742
MA0028.10.382
MA0029.10.0534
MA0030.10.409
MA0031.10.131
MA0035.20.0212
MA0038.10.012
MA0039.20.0598
MA0040.10.98
MA0041.10.135
MA0042.10.586
MA0043.10.0351
MA0046.10.628
MA0047.20.379
MA0048.10.474
MA0050.10.0812
MA0051.10.0768
MA0052.10.632
MA0055.10.702
MA0057.10.807
MA0058.10.835
MA0059.10.152
MA0060.11.96204e-31
MA0061.18.95055e-5
MA0062.20.239
MA0065.20.834
MA0066.10.533
MA0067.10.543
MA0068.10.508
MA0069.10.882
MA0070.10.161
MA0071.10.471
MA0072.10.237
MA0073.10.988
MA0074.10.615
MA0076.10.139
MA0077.10.314
MA0078.10.139
MA0079.20.059
MA0080.22.85544e-4
MA0081.10.238
MA0083.10.00548
MA0084.10.989
MA0087.10.528
MA0088.10.23
MA0090.10.751
MA0091.10.473
MA0092.10.185
MA0093.10.897
MA0099.26.36805e-9
MA0100.19.66777e-9
MA0101.10.00774
MA0102.20.388
MA0103.10.558
MA0104.20.958
MA0105.12.02201e-11
MA0106.10.00133
MA0107.12.51372e-4
MA0108.28.58621e-5
MA0111.10.422
MA0112.27.32621e-4
MA0113.10.615
MA0114.10.407
MA0115.10.415
MA0116.13.33506e-4
MA0117.10.586
MA0119.10.00615
MA0122.10.936
MA0124.10.775
MA0125.10.899
MA0131.10.221
MA0135.10.0803
MA0136.10.055
MA0137.20.901
MA0138.20.6
MA0139.10.325
MA0140.13.3183e-4
MA0141.10.768
MA0142.10.156
MA0143.10.507
MA0144.10.15
MA0145.10.383
MA0146.10.976
MA0147.10.733
MA0148.10.355
MA0149.10.0549
MA0150.10.00127
MA0152.10.595
MA0153.10.447
MA0154.11.95384e-4
MA0155.10.713
MA0156.10.217
MA0157.10.16
MA0159.10.365
MA0160.10.648
MA0162.10.49
MA0163.10.0037
MA0164.10.934
MA0258.10.0472
MA0259.10.7



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10632

Novel motifP-value
10.0343
100.135
1000.935
1010.646
1020.706
1030.627
1040.75
1050.482
1061.04513e-4
1070.0456
1080.289
1090.724
110.101
1100.218
1110.389
1120.0178
1130.606
1140.12
1150.755
1160.461
1170.82
1180.148
1190.105
120.744
1200.148
1210.488
1220.776
1230.00773
1240.212
1250.652
1260.449
1270.463
1280.0221
1290.557
130.4
1300.0534
1310.493
1320.653
1330.617
1340.661
1350.365
1360.0139
1370.281
1380.0873
1390.253
140.334
1400.0284
1410.152
1420.866
1430.821
1440.772
1450.161
1460.88
1470.606
1480.177
1490.259
150.341
1500.413
1510.169
1520.205
1530.4
1540.0742
1550.642
1560.535
1570.898
1580.515
1590.601
160.37
1600.0265
1610.88
1620.82
1630.211
1649.53702e-5
1650.572
1660.708
1670.179
1680.469
1690.116
170.1
180.11
190.699
20.436
200.763
210.413
220.735
230.0398
240.559
250.911
260.127
270.269
280.71
290.61
30.0496
300.48
310.293
320.483
330.865
340.961
350.21
360.0249
370.0829
380.385
390.879
40.0718
400.471
410.252
420.248
430.227
440.415
450.642
460.0432
470.245
480.235
490.802
50.311
500.976
510.206
520.432
530.188
540.296
550.169
560.208
570.0651
580.346
590.219
60.602
600.1
610.749
620.163
630.114
640.35
650.158
666.10982e-9
670.556
680.417
690.86
70.513
700.167
710.0865
720.653
730.19
740.377
750.12
760.241
770.211
780.0571
790.504
80.305
800.915
810.26
820.251
830.848
840.456
850.0632
860.523
870.0739
880.831
890.292
90.92
900.079
910.134
920.118
930.221
940.013
950.878
960.424
970.55
980.347
990.518



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10632


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000473 (testis)
0000991 (gonad)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010026 (human testis - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)

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