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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005616
|DRA_sample_Accession=CAGE@SAMD00005616
|accession_numbers=CAGE;DRX008710;DRR009582;DRZ001007;DRZ002392
|accession_numbers=CAGE;DRX008710;DRR009582;DRZ001007;DRZ002392;DRZ012357;DRZ013742
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001987,UBERON:0000479,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0003100,UBERON:0000474
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001987,UBERON:0000479,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0003100,UBERON:0000474
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
Line 54: Line 54:
|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;10021
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10021
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;10021
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10021
|name=placenta, adult, pool1
|name=placenta, adult, pool1
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[21]=21&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 101: Line 101:
|top_motifs=FOX{D1,D2}:2.36279481902;FOXO1,3,4:2.35383088188;TBP:2.23182657007;ZNF238:1.99946056729;XCPE1{core}:1.94690693706;MAZ:1.70723345043;TFAP2{A,C}:1.61701210632;EP300:1.50056174552;SP1:1.44683473872;IKZF1:1.42610619636;RORA:1.34210153635;PATZ1:1.3068823405;TFCP2:1.28584030611;GZF1:1.27343837432;TEAD1:1.26814517258;STAT2,4,6:1.20687257209;NR1H4:1.19784355897;MYBL2:1.15082323003;SOX5:1.12029142539;ALX1:1.11453663948;BPTF:1.1130237024;FOX{I1,J2}:1.09467240379;MED-1{core}:1.07844214581;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.07287954132;NKX3-2:1.05630471276;SMAD1..7,9:1.03511497557;NFATC1..3:1.02496112539;SNAI1..3:1.00068633794;PPARG:0.976372543929;EBF1:0.930354584935;ZNF148:0.870354409419;GCM1,2:0.854841033301;SRF:0.832761372595;NKX2-1,4:0.80999442477;GATA6:0.798533134165;TGIF1:0.795142516797;HAND1,2:0.783257838446;HIC1:0.771491359918;GTF2I:0.770346491754;ZEB1:0.743797391558;IRF1,2:0.715478029344;FOXQ1:0.634713421332;SREBF1,2:0.625312153061;PAX5:0.609074191427;AR:0.607133522305;TLX1..3_NFIC{dimer}:0.594980148066;MZF1:0.5947432385;CDC5L:0.592507932005;TLX2:0.55175500856;TFAP4:0.545043766506;EN1,2:0.532917837828;PRDM1:0.518790659535;IRF7:0.514828912213;TBX4,5:0.509151368102;GLI1..3:0.501417721618;ESR1:0.498738331235;HOX{A6,A7,B6,B7}:0.492617652602;POU3F1..4:0.489703915018;GTF2A1,2:0.480839130352;TEF:0.477909692858;HLF:0.455385538953;SPZ1:0.450198457698;TFAP2B:0.443807910211;ZIC1..3:0.442388146011;MYOD1:0.441508480228;FOXL1:0.437033200666;EVI1:0.410818235827;ETS1,2:0.407373356652;FOXN1:0.369894448402;HNF1A:0.367013764717;ZFP161:0.342050965145;NKX3-1:0.318451654813;KLF4:0.3151727155;PAX1,9:0.286056183833;ZNF423:0.268783022293;NANOG:0.262518610446;MYFfamily:0.257733256949;MAFB:0.247825094924;TP53:0.236916023814;NHLH1,2:0.234641473303;ATF2:0.227846051364;STAT1,3:0.211426463364;POU1F1:0.206676556257;POU6F1:0.177096922007;NR3C1:0.17460861512;SPIB:0.170787694901;MTE{core}:0.150457427024;EGR1..3:0.149706813563;MTF1:0.149043477493;ELF1,2,4:0.145847817434;ATF6:0.145184893925;HSF1,2:0.128462527157;FOX{F1,F2,J1}:0.11371480187;CRX:0.103336703638;HBP1_HMGB_SSRP1_UBTF:0.0722396735796;HNF4A_NR2F1,2:0.0695114652468;NR6A1:0.0691257673287;SPI1:0.0603199392877;NFE2L2:0.0600658243501;FOXA2:0.0548744326376;HMX1:0.0448274770117;JUN:0.0391958303318;POU2F1..3:0.0285064116922;NANOG{mouse}:0.0197101703288;GFI1:0.0169102361667;GATA4:-0.0141508947559;MEF2{A,B,C,D}:-0.0200884255138;VSX1,2:-0.099552076095;SOX17:-0.108074683907;NFIL3:-0.122162141393;PAX8:-0.13474014822;ATF4:-0.140113471104;RXRA_VDR{dimer}:-0.151533160399;TOPORS:-0.167997264799;FOS_FOS{B,L1}_JUN{B,D}:-0.193850366131;GFI1B:-0.199781097182;PBX1:-0.216646010529;RREB1:-0.226194889418;FOXP3:-0.234271333366;NFE2:-0.254339520058;UFEwm:-0.273554324518;BACH2:-0.278820205734;ADNP_IRX_SIX_ZHX:-0.292538190381;bHLH_family:-0.295463676508;ALX4:-0.299108781773;SOX2:-0.302545918083;FOSL2:-0.314122544152;ZNF143:-0.315691893099;E2F1..5:-0.322838818981;CEBPA,B_DDIT3:-0.323878662925;XBP1:-0.347955539421;FOXD3:-0.385438220092;ESRRA:-0.416432282104;DMAP1_NCOR{1,2}_SMARC:-0.426532163862;NRF1:-0.436297830016;T:-0.436314020016;HMGA1,2:-0.446043970592;RBPJ:-0.451328466783;SOX{8,9,10}:-0.457969620369;PAX2:-0.460476481832;RUNX1..3:-0.464582413426;HOX{A4,D4}:-0.467524811576;HOX{A5,B5}:-0.487338677001;FOXP1:-0.488237582426;ZBTB6:-0.488551933603;NFKB1_REL_RELA:-0.490717958768;ZNF384:-0.496614677511;PRRX1,2:-0.514606303699;NKX2-2,8:-0.514901020232;IKZF2:-0.52757955253;FOXM1:-0.554773179886;BREu{core}:-0.567014287559;HIF1A:-0.57885408547;ATF5_CREB3:-0.579645076916;CUX2:-0.585352038047;NFIX:-0.588942393658;HOXA9_MEIS1:-0.596513184728;NFE2L1:-0.602740543613;LEF1_TCF7_TCF7L1,2:-0.605761144198;STAT5{A,B}:-0.629593575619;PAX6:-0.649714169046;NFY{A,B,C}:-0.661965853003;RFX2..5_RFXANK_RFXAP:-0.678953659609;OCT4_SOX2{dimer}:-0.692642510773;PAX3,7:-0.703658705687;ARID5B:-0.716664966728;CREB1:-0.727580841642;REST:-0.728279820478;LMO2:-0.746181325458;RFX1:-0.768744521257;NR5A1,2:-0.804796920458;HES1:-0.821074986281;AHR_ARNT_ARNT2:-0.821226529524;AIRE:-0.854417678542;PDX1:-0.928069082308;TAL1_TCF{3,4,12}:-0.949165544638;YY1:-0.961360953977;TFDP1:-0.968946557765;RXR{A,B,G}:-0.97723216837;DBP:-1.00256435366;ELK1,4_GABP{A,B1}:-1.02172419737;MYB:-1.07444474443;CDX1,2,4:-1.09596258254;PITX1..3:-1.13781749111;PAX4:-1.14487642497;NKX2-3_NKX2-5:-1.19163820931;POU5F1:-1.20870064818;NKX6-1,2:-1.30863813444;LHX3,4:-1.36767944011;ONECUT1,2:-1.37613523918;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.44131131883;ZBTB16:-1.7721292084
|top_motifs=FOX{D1,D2}:2.36279481902;FOXO1,3,4:2.35383088188;TBP:2.23182657007;ZNF238:1.99946056729;XCPE1{core}:1.94690693706;MAZ:1.70723345043;TFAP2{A,C}:1.61701210632;EP300:1.50056174552;SP1:1.44683473872;IKZF1:1.42610619636;RORA:1.34210153635;PATZ1:1.3068823405;TFCP2:1.28584030611;GZF1:1.27343837432;TEAD1:1.26814517258;STAT2,4,6:1.20687257209;NR1H4:1.19784355897;MYBL2:1.15082323003;SOX5:1.12029142539;ALX1:1.11453663948;BPTF:1.1130237024;FOX{I1,J2}:1.09467240379;MED-1{core}:1.07844214581;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.07287954132;NKX3-2:1.05630471276;SMAD1..7,9:1.03511497557;NFATC1..3:1.02496112539;SNAI1..3:1.00068633794;PPARG:0.976372543929;EBF1:0.930354584935;ZNF148:0.870354409419;GCM1,2:0.854841033301;SRF:0.832761372595;NKX2-1,4:0.80999442477;GATA6:0.798533134165;TGIF1:0.795142516797;HAND1,2:0.783257838446;HIC1:0.771491359918;GTF2I:0.770346491754;ZEB1:0.743797391558;IRF1,2:0.715478029344;FOXQ1:0.634713421332;SREBF1,2:0.625312153061;PAX5:0.609074191427;AR:0.607133522305;TLX1..3_NFIC{dimer}:0.594980148066;MZF1:0.5947432385;CDC5L:0.592507932005;TLX2:0.55175500856;TFAP4:0.545043766506;EN1,2:0.532917837828;PRDM1:0.518790659535;IRF7:0.514828912213;TBX4,5:0.509151368102;GLI1..3:0.501417721618;ESR1:0.498738331235;HOX{A6,A7,B6,B7}:0.492617652602;POU3F1..4:0.489703915018;GTF2A1,2:0.480839130352;TEF:0.477909692858;HLF:0.455385538953;SPZ1:0.450198457698;TFAP2B:0.443807910211;ZIC1..3:0.442388146011;MYOD1:0.441508480228;FOXL1:0.437033200666;EVI1:0.410818235827;ETS1,2:0.407373356652;FOXN1:0.369894448402;HNF1A:0.367013764717;ZFP161:0.342050965145;NKX3-1:0.318451654813;KLF4:0.3151727155;PAX1,9:0.286056183833;ZNF423:0.268783022293;NANOG:0.262518610446;MYFfamily:0.257733256949;MAFB:0.247825094924;TP53:0.236916023814;NHLH1,2:0.234641473303;ATF2:0.227846051364;STAT1,3:0.211426463364;POU1F1:0.206676556257;POU6F1:0.177096922007;NR3C1:0.17460861512;SPIB:0.170787694901;MTE{core}:0.150457427024;EGR1..3:0.149706813563;MTF1:0.149043477493;ELF1,2,4:0.145847817434;ATF6:0.145184893925;HSF1,2:0.128462527157;FOX{F1,F2,J1}:0.11371480187;CRX:0.103336703638;HBP1_HMGB_SSRP1_UBTF:0.0722396735796;HNF4A_NR2F1,2:0.0695114652468;NR6A1:0.0691257673287;SPI1:0.0603199392877;NFE2L2:0.0600658243501;FOXA2:0.0548744326376;HMX1:0.0448274770117;JUN:0.0391958303318;POU2F1..3:0.0285064116922;NANOG{mouse}:0.0197101703288;GFI1:0.0169102361667;GATA4:-0.0141508947559;MEF2{A,B,C,D}:-0.0200884255138;VSX1,2:-0.099552076095;SOX17:-0.108074683907;NFIL3:-0.122162141393;PAX8:-0.13474014822;ATF4:-0.140113471104;RXRA_VDR{dimer}:-0.151533160399;TOPORS:-0.167997264799;FOS_FOS{B,L1}_JUN{B,D}:-0.193850366131;GFI1B:-0.199781097182;PBX1:-0.216646010529;RREB1:-0.226194889418;FOXP3:-0.234271333366;NFE2:-0.254339520058;UFEwm:-0.273554324518;BACH2:-0.278820205734;ADNP_IRX_SIX_ZHX:-0.292538190381;bHLH_family:-0.295463676508;ALX4:-0.299108781773;SOX2:-0.302545918083;FOSL2:-0.314122544152;ZNF143:-0.315691893099;E2F1..5:-0.322838818981;CEBPA,B_DDIT3:-0.323878662925;XBP1:-0.347955539421;FOXD3:-0.385438220092;ESRRA:-0.416432282104;DMAP1_NCOR{1,2}_SMARC:-0.426532163862;NRF1:-0.436297830016;T:-0.436314020016;HMGA1,2:-0.446043970592;RBPJ:-0.451328466783;SOX{8,9,10}:-0.457969620369;PAX2:-0.460476481832;RUNX1..3:-0.464582413426;HOX{A4,D4}:-0.467524811576;HOX{A5,B5}:-0.487338677001;FOXP1:-0.488237582426;ZBTB6:-0.488551933603;NFKB1_REL_RELA:-0.490717958768;ZNF384:-0.496614677511;PRRX1,2:-0.514606303699;NKX2-2,8:-0.514901020232;IKZF2:-0.52757955253;FOXM1:-0.554773179886;BREu{core}:-0.567014287559;HIF1A:-0.57885408547;ATF5_CREB3:-0.579645076916;CUX2:-0.585352038047;NFIX:-0.588942393658;HOXA9_MEIS1:-0.596513184728;NFE2L1:-0.602740543613;LEF1_TCF7_TCF7L1,2:-0.605761144198;STAT5{A,B}:-0.629593575619;PAX6:-0.649714169046;NFY{A,B,C}:-0.661965853003;RFX2..5_RFXANK_RFXAP:-0.678953659609;OCT4_SOX2{dimer}:-0.692642510773;PAX3,7:-0.703658705687;ARID5B:-0.716664966728;CREB1:-0.727580841642;REST:-0.728279820478;LMO2:-0.746181325458;RFX1:-0.768744521257;NR5A1,2:-0.804796920458;HES1:-0.821074986281;AHR_ARNT_ARNT2:-0.821226529524;AIRE:-0.854417678542;PDX1:-0.928069082308;TAL1_TCF{3,4,12}:-0.949165544638;YY1:-0.961360953977;TFDP1:-0.968946557765;RXR{A,B,G}:-0.97723216837;DBP:-1.00256435366;ELK1,4_GABP{A,B1}:-1.02172419737;MYB:-1.07444474443;CDX1,2,4:-1.09596258254;PITX1..3:-1.13781749111;PAX4:-1.14487642497;NKX2-3_NKX2-5:-1.19163820931;POU5F1:-1.20870064818;NKX6-1,2:-1.30863813444;LHX3,4:-1.36767944011;ONECUT1,2:-1.37613523918;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.44131131883;ZBTB16:-1.7721292084
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10021-101D3;search_select_hide=table117:FF:10021-101D3
}}
}}

Latest revision as of 12:14, 3 June 2020

Name:placenta, adult, pool1
Species:Human (Homo sapiens)
Library ID:CNhs10627
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueplacenta
dev stageadult
sexfemale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyAmbion
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number0910061 -12
catalog numberCat:AM6000 Lot:0910061 -12
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005616
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10627 CAGE DRX008710 DRR009582
Accession ID Hg19

Library idBAMCTSS
CNhs10627 DRZ001007 DRZ002392
Accession ID Hg38

Library idBAMCTSS
CNhs10627 DRZ012357 DRZ013742
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.111
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.118
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0.0369
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.457
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0369
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0709
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0.159
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.889
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0313
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.17
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0819
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0709
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0.0369
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0709
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.175
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.0369
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.00117
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.159
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.185
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.674
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.26
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.243
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.102
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.146
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0709
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0.185
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0709
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0344
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0369
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.288
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.351
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0.132
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.21
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.299
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0369
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0.0369
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0709
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.255
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0.881
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.0369
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0.457
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.0709
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.132
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.102
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0.0709
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0336
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.508
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0.0709
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0.0369
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10627

Jaspar motifP-value
MA0002.20.103
MA0003.10.0463
MA0004.10.158
MA0006.10.0799
MA0007.10.9
MA0009.10.797
MA0014.10.675
MA0017.10.839
MA0018.20.269
MA0019.10.214
MA0024.10.179
MA0025.10.257
MA0027.10.491
MA0028.18.68178e-5
MA0029.10.195
MA0030.16.53818e-4
MA0031.19.59269e-10
MA0035.27.86351e-4
MA0038.10.339
MA0039.20.0274
MA0040.10.0659
MA0041.10.413
MA0042.10.51
MA0043.10.218
MA0046.10.0643
MA0047.21.96705e-4
MA0048.10.00624
MA0050.10.0856
MA0051.10.307
MA0052.10.838
MA0055.10.06
MA0057.10.938
MA0058.10.122
MA0059.10.00377
MA0060.10.0197
MA0061.10.00149
MA0062.25.39611e-5
MA0065.20.5
MA0066.10.919
MA0067.10.0297
MA0068.10.00958
MA0069.10.637
MA0070.10.396
MA0071.10.998
MA0072.10.719
MA0073.10.67
MA0074.10.445
MA0076.14.86298e-4
MA0077.10.372
MA0078.10.056
MA0079.20.101
MA0080.20.423
MA0081.10.408
MA0083.10.0368
MA0084.10.685
MA0087.10.3
MA0088.10.0594
MA0090.11.40107e-4
MA0091.10.371
MA0092.10.24
MA0093.10.124
MA0099.20.00783
MA0100.10.376
MA0101.10.0116
MA0102.20.739
MA0103.10.195
MA0104.22.39877e-4
MA0105.10.00193
MA0106.10.903
MA0107.10.00952
MA0108.21.90046e-17
MA0111.10.603
MA0112.20.226
MA0113.10.0989
MA0114.10.969
MA0115.10.667
MA0116.10.124
MA0117.10.366
MA0119.10.569
MA0122.10.523
MA0124.10.257
MA0125.10.189
MA0131.10.286
MA0135.10.838
MA0136.10.533
MA0137.20.0189
MA0138.20.443
MA0139.10.418
MA0140.10.00724
MA0141.10.435
MA0142.10.59
MA0143.10.241
MA0144.10.00527
MA0145.10.00113
MA0146.10.55
MA0147.11.38483e-4
MA0148.10.00256
MA0149.10.0556
MA0150.10.0958
MA0152.10.791
MA0153.10.427
MA0154.10.401
MA0155.10.334
MA0156.10.415
MA0157.10.00499
MA0159.10.642
MA0160.10.726
MA0162.10.862
MA0163.10.00713
MA0164.10.293
MA0258.10.931
MA0259.10.136



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10627

Novel motifP-value
10.211
100.0846
1000.132
1010.738
1020.465
1030.383
1040.576
1050.33
1060.384
1070.0352
1080.79
1090.382
110.585
1100.562
1110.0044
1120.753
1130.00131
1140.799
1150.779
1160.329
1170.154
1180.327
1190.632
120.217
1200.992
1210.664
1220.836
1230.00968
1240.423
1250.493
1260.255
1270.0318
1280.762
1290.658
130.597
1300.898
1310.203
1320.162
1330.135
1340.469
1350.0278
1360.908
1370.605
1380.6
1390.664
140.711
1400.483
1410.705
1420.483
1430.028
1440.0752
1450.801
1460.123
1470.883
1480.775
1490.175
150.177
1500.783
1510.716
1520.0442
1530.437
1540.315
1550.952
1560.52
1570.294
1580.323
1590.532
160.654
1600.997
1610.302
1620.202
1630.741
1640.113
1650.479
1660.592
1670.00163
1680.897
1690.304
170.713
180.0516
190.139
20.0879
200.122
210.766
220.32
230.0948
240.969
250.56
260.705
270.771
280.945
290.0243
30.43
300.0227
310.885
320.291
330.298
340.152
350.416
360.0978
370.645
380.887
390.388
40.143
400.675
410.119
420.424
430.599
440.918
450.0183
460.433
470.317
480.603
490.47
50.803
500.427
510.834
520.249
530.884
540.765
550.987
560.7
570.456
580.716
590.582
60.545
600.607
610.264
620.722
630.892
640.767
650.5
660.177
670.906
680.331
690.44
70.987
700.972
710.246
720.98
730.785
740.0938
750.0456
760.0503
770.0746
780.931
790.592
80.224
800.353
810.0732
820.986
830.535
840.309
850.44
860.682
870.0476
880.709
890.205
90.181
900.692
910.452
920.972
930.758
940.193
950.115
960.412
970.0857
980.767
990.497



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10627


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001987 (placenta)
0000479 (tissue)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010021 (human placenta - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0005795 (embryonic uterus)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0003124 (chorion)
UBERON:0010316 (germ layer / neural crest)

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