FF:10021-101D3: Difference between revisions

Latest revision as of 12:14, 3 June 2020

Name:	placenta, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10627
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	placenta
dev stage	adult
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Ambion
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	0910061 -12
catalog number	Cat:AM6000 Lot:0910061 -12
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005616

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10627		CAGE		DRX008710		DRR009582

Accession ID Hg19

Library id		BAM		CTSS
CNhs10627		DRZ001007		DRZ002392

Accession ID Hg38

Library id		BAM		CTSS
CNhs10627		DRZ012357		DRZ013742

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.111
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.118
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0.0369
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.457
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0369
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0709
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0.159
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.889
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0313
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.17
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0819
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0709
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0.0369
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0709
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.175
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.0369
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.00117
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.159
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.185
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.674
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.26
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.243
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.102
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.146
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0709
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0.185
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0709
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0344
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0369
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.288
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.351
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0.132
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.21
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.299
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0369
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0.0369
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0709
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.255
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0.881
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.0369
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0.457
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0709
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.132
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.102
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0.0709
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0336
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.508
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0.0709
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0.0369
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10627

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.103
MA0003.1	MA0003.1	0.0463
MA0004.1	MA0004.1	0.158
MA0006.1	MA0006.1	0.0799
MA0007.1	MA0007.1	0.9
MA0009.1	MA0009.1	0.797
MA0014.1	MA0014.1	0.675
MA0017.1	MA0017.1	0.839
MA0018.2	MA0018.2	0.269
MA0019.1	MA0019.1	0.214
MA0024.1	MA0024.1	0.179
MA0025.1	MA0025.1	0.257
MA0027.1	MA0027.1	0.491
MA0028.1	MA0028.1	8.68178e-5
MA0029.1	MA0029.1	0.195
MA0030.1	MA0030.1	6.53818e-4
MA0031.1	MA0031.1	9.59269e-10
MA0035.2	MA0035.2	7.86351e-4
MA0038.1	MA0038.1	0.339
MA0039.2	MA0039.2	0.0274
MA0040.1	MA0040.1	0.0659
MA0041.1	MA0041.1	0.413
MA0042.1	MA0042.1	0.51
MA0043.1	MA0043.1	0.218
MA0046.1	MA0046.1	0.0643
MA0047.2	MA0047.2	1.96705e-4
MA0048.1	MA0048.1	0.00624
MA0050.1	MA0050.1	0.0856
MA0051.1	MA0051.1	0.307
MA0052.1	MA0052.1	0.838
MA0055.1	MA0055.1	0.06
MA0057.1	MA0057.1	0.938
MA0058.1	MA0058.1	0.122
MA0059.1	MA0059.1	0.00377
MA0060.1	MA0060.1	0.0197
MA0061.1	MA0061.1	0.00149
MA0062.2	MA0062.2	5.39611e-5
MA0065.2	MA0065.2	0.5
MA0066.1	MA0066.1	0.919
MA0067.1	MA0067.1	0.0297
MA0068.1	MA0068.1	0.00958
MA0069.1	MA0069.1	0.637
MA0070.1	MA0070.1	0.396
MA0071.1	MA0071.1	0.998
MA0072.1	MA0072.1	0.719
MA0073.1	MA0073.1	0.67
MA0074.1	MA0074.1	0.445
MA0076.1	MA0076.1	4.86298e-4
MA0077.1	MA0077.1	0.372
MA0078.1	MA0078.1	0.056
MA0079.2	MA0079.2	0.101
MA0080.2	MA0080.2	0.423
MA0081.1	MA0081.1	0.408
MA0083.1	MA0083.1	0.0368
MA0084.1	MA0084.1	0.685
MA0087.1	MA0087.1	0.3
MA0088.1	MA0088.1	0.0594
MA0090.1	MA0090.1	1.40107e-4
MA0091.1	MA0091.1	0.371
MA0092.1	MA0092.1	0.24
MA0093.1	MA0093.1	0.124
MA0099.2	MA0099.2	0.00783
MA0100.1	MA0100.1	0.376
MA0101.1	MA0101.1	0.0116
MA0102.2	MA0102.2	0.739
MA0103.1	MA0103.1	0.195
MA0104.2	MA0104.2	2.39877e-4
MA0105.1	MA0105.1	0.00193
MA0106.1	MA0106.1	0.903
MA0107.1	MA0107.1	0.00952
MA0108.2	MA0108.2	1.90046e-17
MA0111.1	MA0111.1	0.603
MA0112.2	MA0112.2	0.226
MA0113.1	MA0113.1	0.0989
MA0114.1	MA0114.1	0.969
MA0115.1	MA0115.1	0.667
MA0116.1	MA0116.1	0.124
MA0117.1	MA0117.1	0.366
MA0119.1	MA0119.1	0.569
MA0122.1	MA0122.1	0.523
MA0124.1	MA0124.1	0.257
MA0125.1	MA0125.1	0.189
MA0131.1	MA0131.1	0.286
MA0135.1	MA0135.1	0.838
MA0136.1	MA0136.1	0.533
MA0137.2	MA0137.2	0.0189
MA0138.2	MA0138.2	0.443
MA0139.1	MA0139.1	0.418
MA0140.1	MA0140.1	0.00724
MA0141.1	MA0141.1	0.435
MA0142.1	MA0142.1	0.59
MA0143.1	MA0143.1	0.241
MA0144.1	MA0144.1	0.00527
MA0145.1	MA0145.1	0.00113
MA0146.1	MA0146.1	0.55
MA0147.1	MA0147.1	1.38483e-4
MA0148.1	MA0148.1	0.00256
MA0149.1	MA0149.1	0.0556
MA0150.1	MA0150.1	0.0958
MA0152.1	MA0152.1	0.791
MA0153.1	MA0153.1	0.427
MA0154.1	MA0154.1	0.401
MA0155.1	MA0155.1	0.334
MA0156.1	MA0156.1	0.415
MA0157.1	MA0157.1	0.00499
MA0159.1	MA0159.1	0.642
MA0160.1	MA0160.1	0.726
MA0162.1	MA0162.1	0.862
MA0163.1	MA0163.1	0.00713
MA0164.1	MA0164.1	0.293
MA0258.1	MA0258.1	0.931
MA0259.1	MA0259.1	0.136

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10627

Novel motif	Logo	P-value
1	1	0.211
10	10	0.0846
100	100	0.132
101	101	0.738
102	102	0.465
103	103	0.383
104	104	0.576
105	105	0.33
106	106	0.384
107	107	0.0352
108	108	0.79
109	109	0.382
11	11	0.585
110	110	0.562
111	111	0.0044
112	112	0.753
113	113	0.00131
114	114	0.799
115	115	0.779
116	116	0.329
117	117	0.154
118	118	0.327
119	119	0.632
12	12	0.217
120	120	0.992
121	121	0.664
122	122	0.836
123	123	0.00968
124	124	0.423
125	125	0.493
126	126	0.255
127	127	0.0318
128	128	0.762
129	129	0.658
13	13	0.597
130	130	0.898
131	131	0.203
132	132	0.162
133	133	0.135
134	134	0.469
135	135	0.0278
136	136	0.908
137	137	0.605
138	138	0.6
139	139	0.664
14	14	0.711
140	140	0.483
141	141	0.705
142	142	0.483
143	143	0.028
144	144	0.0752
145	145	0.801
146	146	0.123
147	147	0.883
148	148	0.775
149	149	0.175
15	15	0.177
150	150	0.783
151	151	0.716
152	152	0.0442
153	153	0.437
154	154	0.315
155	155	0.952
156	156	0.52
157	157	0.294
158	158	0.323
159	159	0.532
16	16	0.654
160	160	0.997
161	161	0.302
162	162	0.202
163	163	0.741
164	164	0.113
165	165	0.479
166	166	0.592
167	167	0.00163
168	168	0.897
169	169	0.304
17	17	0.713
18	18	0.0516
19	19	0.139
2	2	0.0879
20	20	0.122
21	21	0.766
22	22	0.32
23	23	0.0948
24	24	0.969
25	25	0.56
26	26	0.705
27	27	0.771
28	28	0.945
29	29	0.0243
3	3	0.43
30	30	0.0227
31	31	0.885
32	32	0.291
33	33	0.298
34	34	0.152
35	35	0.416
36	36	0.0978
37	37	0.645
38	38	0.887
39	39	0.388
4	4	0.143
40	40	0.675
41	41	0.119
42	42	0.424
43	43	0.599
44	44	0.918
45	45	0.0183
46	46	0.433
47	47	0.317
48	48	0.603
49	49	0.47
5	5	0.803
50	50	0.427
51	51	0.834
52	52	0.249
53	53	0.884
54	54	0.765
55	55	0.987
56	56	0.7
57	57	0.456
58	58	0.716
59	59	0.582
6	6	0.545
60	60	0.607
61	61	0.264
62	62	0.722
63	63	0.892
64	64	0.767
65	65	0.5
66	66	0.177
67	67	0.906
68	68	0.331
69	69	0.44
7	7	0.987
70	70	0.972
71	71	0.246
72	72	0.98
73	73	0.785
74	74	0.0938
75	75	0.0456
76	76	0.0503
77	77	0.0746
78	78	0.931
79	79	0.592
8	8	0.224
80	80	0.353
81	81	0.0732
82	82	0.986
83	83	0.535
84	84	0.309
85	85	0.44
86	86	0.682
87	87	0.0476
88	88	0.709
89	89	0.205
9	9	0.181
90	90	0.692
91	91	0.452
92	92	0.972
93	93	0.758
94	94	0.193
95	95	0.115
96	96	0.412
97	97	0.0857
98	98	0.767
99	99	0.497

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10627

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010021 human placenta - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001987 (placenta)
0000479 (tissue)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010021 (human placenta - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0005795 (embryonic uterus)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0003124 (chorion)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008601
+|DRA_sample_Accession=CAGE@SAMD00005616
-|accession_numbers=CAGE;DRX008710;DRR009582;DRZ001007;DRZ002392
+|accession_numbers=CAGE;DRX008710;DRR009582;DRZ001007;DRZ002392;DRZ012357;DRZ013742
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001987,UBERON:0000479,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0003100,UBERON:0000474
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.88!749.18!HOPX;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.39!244.29!PEG3;;chr6:53013620..53013644,-!p1@GCM1!2.26!181.13!GCM1;;chr4:174451370..174451387,-!p1@HAND2!2.21!159.66!HAND2;;chr6:134210243..134210257,+!p1@TCF21!2.19!155.32!TCF21;;chr8:135708787..135708805,-!p2@ZFAT!2.12!131.19!ZFAT;;chr6:10412600..10412637,-!p1@TFAP2A!2.03!173.24!TFAP2A;;chr3:128212033..128212051,-!p1@GATA2!2.02!103.16!GATA2;;chr6:10415276..10415341,-!p2@TFAP2A!1.93!101.56!TFAP2A;;chr2:46524897..46524911,+!p2@EPAS1!1.85!188.40!EPAS1;;chr9:77112244..77112262,+!p1@RORB!1.84!75.22!RORB;;chr1:6479968..6479986,-!p1@HES2!1.84!68.48!HES2;;chrX:131547625..131547644,-!p4@MBNL3!1.83!65.91!MBNL3;;chr17:80797886..80797906,-!p1@ZNF750!1.79!60.58!ZNF750;;chr7:96654133..96654150,-!p1@DLX5!1.78!59.61!DLX5;;chr10:8096772..8096787,+!p2@GATA3!1.76!66.70!GATA3;;chr20:55204351..55204377,+!p1@TFAP2C!1.75!68.83!TFAP2C;;chr1:216896752..216896778,-!p1@ESRRG!1.75!55.35!ESRRG;;chrX:70316005..70316034,+!p2@FOXO4!1.74!95.98!FOXO4;;chrX:70319128..70319142,+!p3@FOXO4!1.71!50.29!FOXO4;;chr17:48072574..48072597,-!p1@DLX3!1.70!49.41!DLX3;;chr10:8096631..8096660,+!p1@GATA3!1.67!54.37!GATA3;;chr7:28725715..28725727,+!p3@CREB5!1.67!53.40!CREB5;;chr1:216896780..216896800,-!p2@ESRRG!1.63!41.96!ESRRG;;chr6:10415484..10415508,-!p3@TFAP2A!1.63!41.69!TFAP2A;;chr3:12330560..12330579,+!p1@PPARG!1.61!45.59!PPARG;;chr8:102504651..102504683,+!p1@GRHL2!1.61!40.09!GRHL2;;chrX:131547596..131547609,-!p10@MBNL3!1.59!38.32!MBNL3;;chr8:10588010..10588030,-!p1@SOX7!1.59!37.79!SOX7;;chr1:40105299..40105326,-!p1@HEYL!1.58!37.34!HEYL;;chr6:10412392..10412409,-!p4@TFAP2A!1.56!40.18!TFAP2A;;chr20:62680984..62680999,-!p1@SOX18!1.55!44.97!SOX18;;chr7:35293685..35293718,-!p1@TBX20!1.54!33.88!TBX20;;chr21:39870339..39870443,-!p1@ERG!1.54!33.35!ERG;;chr7:15726296..15726315,-!p1@MEOX2!1.52!31.93!MEOX2;;chr1:201979743..201979762,+!p1@ELF3!1.52!31.76!ELF3;;chr4:87857474..87857489,+!p7@AFF1!1.51!53.75!AFF1;;chr1:209979467..209979494,-!p1@IRF6!1.51!35.13!IRF6;;chrX:70316072..70316085,+!p4@FOXO4!1.48!29.45!FOXO4;;chr12:115122005..115122016,-!p3@TBX3!1.46!33.09!TBX3;;chr11:47400078..47400106,-!p1@SPI1!1.46!27.85!SPI1;;chr4:87856129..87856186,+!p1@AFF1!1.43!341.86!AFF1;;chr4:87856191..87856208,+!p2@AFF1!1.43!197.36!AFF1;;chr10:8095593..8095625,+!p3@GATA3!1.43!30.07!GATA3;;chr6:10412576..10412599,-!p5@TFAP2A!1.40!24.22!TFAP2A;;chr6:10419768..10419819,-!p6@TFAP2A!1.40!24.22!TFAP2A;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.39!23.59!ZBED1;;chr6:10413188..10413249,-!p7@TFAP2A!1.39!23.51!TFAP2A;;chr16:86544113..86544145,+!p1@FOXF1!1.36!26.97!FOXF1;;chr7:15726243..15726293,-!p2@MEOX2!1.36!22.09!MEOX2;;chrX:70316101..70316112,+!p5@FOXO4!1.36!22.09!FOXO4;;chr12:19556998..19557013,+!p6@AEBP2!1.36!21.91!AEBP2;;chr6:41703952..41703994,-!p4@TFEB!1.35!21.38!TFEB;;chr19:45971246..45971265,+!p1@FOSB!1.34!373.08!FOSB;;chr12:115121962..115121987,-!p1@TBX3!1.34!169.07!TBX3;;chr3:128206762..128206781,-!p2@GATA2!1.34!125.07!GATA2;;chr17:45928521..45928539,-!p1@SP6!1.34!20.93!SP6;;chr12:19556960..19556982,+!p10@AEBP2!1.34!20.76!AEBP2;;chr4:174451350..174451363,-!p3@HAND2!1.33!20.49!HAND2;;chr7:19157043..19157088,-!p2@TWIST1!1.32!48.96!TWIST1;;chr2:10091815..10091864,+!p1@GRHL1!1.32!26.26!GRHL1;;chr7:1577111..1577132,+!p4@MAFK!1.32!22.26!MAFK;;chr22:38598086..38598105,+!p1@MAFF!1.31!202.42!MAFF;;chr8:55370487..55370503,+!p1@SOX17!1.31!19.51!SOX17;;chr5:71803177..71803255,-!p1@ZNF366!1.31!19.43!ZNF366;;chr6:53013605..53013616,-!p2@GCM1!1.31!19.34!GCM1;;chr3:141150883..141150961,+!p6@ZBTB38!1.29!18.54!ZBTB38;;chr1:42801540..42801562,-!p4@FOXJ3!1.28!18.18!FOXJ3;;chr2:68592406..68592424,+!p1@PLEK!1.28!18.01!PLEK;;chr19:46801639..46801699,+!p1@HIF3A!1.28!17.92!HIF3A;;chr8:102504979..102505010,+!p2@GRHL2!1.27!17.65!GRHL2;;chr5:174151553..174151610,+!p1@MSX2!1.26!28.21!MSX2;;chr5:174151612..174151633,+!p2@MSX2!1.26!17.03!MSX2;;chr18:53068911..53068935,-!p4@TCF4!1.24!18.36!TCF4;;chr12:115122318..115122331,-!p2@TBX3!1.23!15.79!TBX3;;chr19:33793430..33793447,-!p1@CEBPA!1.22!64.31!CEBPA;;chr6:10419824..10419840,-!p9@TFAP2A!1.22!15.70!TFAP2A;;chr2:145277882..145277967,-!p3@ZEB2!1.21!26.08!ZEB2;;chr7:27239703..27239715,-!p1@HOXA13!1.20!14.99!HOXA13;;chr2:46524537..46524553,+!p1@EPAS1!1.19!1402.12!EPAS1;;chr1:201979703..201979721,+!p2@ELF3!1.18!14.28!ELF3;;chr17:59477233..59477263,+!p1@TBX2!1.17!42.75!TBX2;;chr12:54694653..54694672,-!p2@NFE2!1.17!13.93!NFE2;;chr3:189507432..189507459,+!p1@TP63!1.17!13.75!TP63;;chr2:46524878..46524891,+!p3@EPAS1!1.15!23.33!EPAS1;;chr10:51572408..51572454,+!p3@NCOA4!1.14!74.33!NCOA4;;chr10:114889045..114889074,+!p12@TCF7L2!1.14!12.86!TCF7L2;;chr19:53360870..53360873,-!p1@ZNF468!1.13!46.21!ZNF468;;chr7:1577899..1577943,+!p3@MAFK!1.12!12.33!MAFK;;chr5:92918919..92918942,+!p1@NR2F1!1.10!52.33!NR2F1;;chr11:65554528..65554546,+!p1@OVOL1!1.09!11.35!OVOL1;;chr1:216896801..216896812,-!p5@ESRRG!1.09!11.27!ESRRG;;chr4:26165074..26165110,+!p9@RBPJ!1.09!11.27!RBPJ;;chr12:54785074..54785122,-!p2@ZNF385A!1.08!16.85!ZNF385A;;chr3:13978873..13978883,+!p2@TPRXL!1.08!11.09!TPRXL;;chr5:2751762..2751784,-!p1@IRX2!1.08!11.00!IRX2;;chr7:19157248..19157268,-!p1@TWIST1!1.07!29.89!TWIST1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.06!10.56!TFCP2L1;;chr7:17338266..17338282,+!p1@AHR!1.05!112.83!AHR;;chr16:79634624..79634642,-!p1@MAF!1.05!40.80!MAF;;chr4:87857491..87857519,+!p10@AFF1!1.05!14.10!AFF1;;chr20:30433396..30433414,-!p1@FOXS1!1.05!10.11!FOXS1;;chr12:115121770..115121781,-!p4@TBX3!1.05!10.11!TBX3;;chr3:13978807..13978823,+!p4@TPRXL!1.04!9.85!TPRXL;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.04!9.85!SEBOX;;chr8:37553261..37553282,+!p2@ZNF703!1.03!74.60!ZNF703;;chr16:85932760..85932775,+!p1@IRF8!1.03!9.67!IRF8;;chr4:87857433..87857472,+!p9@AFF1!1.02!17.03!AFF1;;chr2:16080659..16080685,+!p1@MYCN!1.02!9.49!MYCN;;chr6:87923426..87923456,+!p13@ZNF292!1.02!9.49!ZNF292;;chr19:46806868..46806883,+!p3@HIF3A!1.02!9.40!HIF3A;;chr19:45908292..45908374,-!p1@PPP1R13L!1.01!83.03!PPP1R13L;;chr8:80679993..80680011,-!p1@HEY1!1.01!13.48!HEY1;;chr12:54785054..54785072,-!p4@ZNF385A!1.01!10.56!ZNF385A;;chr3:13978886..13978899,+!p3@TPRXL!1.01!9.14!TPRXL;;chr16:67881588..67881612,-!p2@CENPT!1.00!12.33!CENPT;;chr12:115121802..115121814,-!p5@TBX3!1.00!8.96!TBX3;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.99!86.75!ZNF595;;chr7:26191809..26191890,+!p1@NFE2L3!0.99!44.26!NFE2L3;;chr7:27224842..27224872,-!p1@HOXA11!0.99!8.87!HOXA11;;chr4:111544219..111544240,-!p1@PITX2!0.99!8.87!PITX2;;chr14:75745523..75745537,+!p1@FOS!0.98!1042.61!FOS;;chr17:59477275..59477286,+!p3@TBX2!0.98!11.62!TBX2;;chr13:73633131..73633149,+!p1@KLF5!0.97!91.27!KLF5;;chr10:63809013..63809041,+!p3@ARID5B!0.97!47.72!ARID5B;;chr8:102504690..102504704,+!p3@GRHL2!0.97!8.43!GRHL2;;chr6:35464817..35464894,-!p1@TEAD3!0.96!129.33!TEAD3;;chr8:135725369..135725388,-!p3@ZFAT!0.96!11.53!ZFAT;;chr4:111558135..111558198,-!p2@PITX2!0.95!7.98!PITX2;;chr6:10419884..10419898,-!p11@TFAP2A!0.94!7.72!TFAP2A;;chr11:2291814..2291825,-!p2@ASCL2!0.94!7.72!ASCL2;;chr9:110252035..110252057,-!p1@KLF4!0.92!121.70!KLF4;;chr17:59477197..59477212,+!p2@TBX2!0.92!12.86!TBX2;;chr5:50679228..50679288,+!p1@ISL1!0.92!7.36!ISL1;;chr11:47400062..47400077,-!p2@SPI1!0.92!7.27!SPI1;;chr7:137686791..137686821,-!p1@CREB3L2!0.91!213.77!CREB3L2;;chrX:70315688..70315709,+!p1@FOXO4!0.91!17.12!FOXO4;;chr16:79634595..79634620,-!p2@MAF!0.91!13.22!MAF;;chr3:13978766..13978775,+!p6@TPRXL!0.91!7.18!TPRXL;;chr19:53193731..53193767,-!p1@ZNF83!0.90!65.55!ZNF83;;chr5:88178983..88179012,-!p1@MEF2C!0.90!56.68!MEF2C;;chr11:47279504..47279563,+!p1@NR1H3!0.90!16.14!NR1H3;;chr10:35484053..35484076,+!p1@CREM!0.89!17.39!CREM;;chr7:15726176..15726191,-!p3@MEOX2!0.89!6.74!MEOX2;;chr1:212782094..212782109,+!p1@ATF3!0.88!189.65!ATF3;;chr10:51572339..51572376,+!p4@NCOA4!0.88!15.35!NCOA4;;chr13:72441315..72441454,-!p1@DACH1!0.88!13.75!DACH1;;chr1:41827095..41827155,+!p1@FOXO6!0.88!9.05!FOXO6;;chr19:2819943..2819977,+!p2@ZNF554!0.88!8.34!ZNF554;;chr19:46800289..46800327,+!p2@HIF3A!0.88!6.65!HIF3A;;chr11:32457075..32457095,-!p1@WT1!0.88!6.65!WT1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.88!6.65!HOXC5;;chr7:27224795..27224840,-!p2@HOXA11!0.88!6.65!HOXA11;;chr7:96654026..96654061,-!p2@DLX5!0.88!6.65!DLX5;;chr1:40367668..40367684,-!p2@MYCL1!0.88!6.56!MYCL1;;chr6:1389789..1389821,+!p1@FOXF2!0.87!9.05!FOXF2;;chr17:59529743..59529798,+!p1@TBX4!0.87!6.39!TBX4;;chr6:19837592..19837621,+!p1@ID4!0.86!40.63!ID4;;chr6:10412477..10412490,-!p10@TFAP2A!0.86!6.30!TFAP2A;;chr8:11561684..11561751,+!p1@GATA4!0.86!6.30!GATA4;;chr17:6926362..6926377,+!p1@BCL6B!0.86!6.30!BCL6B;;chr2:70142232..70142251,+!p1@MXD1!0.85!36.19!MXD1;;chr19:926001..926046,+!p1@ARID3A!0.85!22.18!ARID3A;;chr6:10413124..10413132,-!p31@TFAP2A!0.85!6.12!TFAP2A;;chrX:131540410..131540438,-!p13@MBNL3!0.85!6.03!MBNL3;;chr15:77197655..77197716,-!p1@SCAPER!0.84!56.77!SCAPER;;chrX:24169518..24169522,+!p8@ZFX!0.84!5.94!ZFX;;chr3:111314186..111314204,-!p1@ZBED2!0.84!5.94!ZBED2;;chr7:27239740..27239759,-!p2@HOXA13!0.84!5.85!HOXA13;;chr11:65554563..65554576,+!p2@OVOL1!0.83!5.77!OVOL1;;chr6:144329384..144329405,-!p1@PLAGL1!0.82!70.87!PLAGL1;;chr19:53445819..53445860,-!p2@ZNF321P,p2@ZNF816-ZNF321P,p2@ZNF816!0.82!17.83!ZNF321P;;chr7:137686763..137686784,-!p5@CREB3L2!0.82!10.02!CREB3L2;;chr2:10091922..10091935,+!p3@GRHL1!0.82!5.68!GRHL1;;chr17:40428359..40428462,-!p1@STAT5B!0.81!76.02!STAT5B;;chr1:204042233..204042249,+!p1@SOX13!0.81!36.72!SOX13;;chr3:137483141..137483162,+!p1@SOX14!0.81!5.50!SOX14;;chr3:39196049..39196062,-!p5@CSRNP1!0.81!5.50!CSRNP1;;chr3:128207349..128207386,-!p3@GATA2!0.81!5.41!GATA2;;chr17:48045917..48045977,+!p1@DLX4!0.81!5.41!DLX4;;chr7:149158187..149158210,-!p2@ZNF777!0.81!5.41!ZNF777;;chr2:88752207..88752218,-!p1@FOXI3!0.80!5.32!FOXI3;;chr19:929027..929051,+!p4@ARID3A!0.80!5.32!ARID3A;;chr16:89970546..89970557,+!p10@TCF25!0.79!5.23!TCF25;;chr17:48049323..48049330,+!p6@DLX4!0.79!5.23!DLX4;;chr12:114843940..114843955,-!p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AP6;;chr12:498415..498492,-!p1@KDM5A!0.28!18.45!KDM5A;;chr7:77428149..77428220,+!p1@PHTF2!0.28!16.85!PHTF2;;chr12:57916466..57916523,+!p2@MBD6!0.28!14.81!MBD6;;chr9:94186131..94186174,-!p2@NFIL3!0.28!13.75!NFIL3;;chr1:155532531..155532605,-!p1@ASH1L!0.28!11.09!ASH1L;;chr19:53898380..53898422,+!p1@ZNF765!0.28!9.76!ZNF765;;chr21:27107259..27107299,+!p1@GABPA!0.28!9.49!GABPA;;chr5:34929629..34929671,+!p2@DNAJC21!0.28!7.81!DNAJC21;;chr7:149470641..149470694,-!p1@ZNF467!0.28!7.10!ZNF467;;chr21:27107672..27107698,+!p2@GABPA!0.28!6.48!GABPA;;chr1:164528445..164528459,+!p2@PBX1!0.28!4.70!PBX1;;chr5:139493727..139493766,+!p4@PURA!0.28!4.26!PURA;;chr1:164528340..164528379,+!p4@PBX1!0.28!3.46!PBX1;;chr2:46524474..46524491,+!p4@EPAS1!0.28!3.37!EPAS1;;chr7:113726357..113726443,+!p1@FOXP2!0.28!2.22!FOXP2;;chr15:57511609..57511651,+!p2@TCF12!0.28!2.13!TCF12;;chr10:22292675..22292686,-!p3@DNAJC1!0.28!2.13!DNAJC1;;chr7:128577972..128578047,+!p1@IRF5!0.28!1.95!IRF5;;chr7:137686552..137686564,-!p9@CREB3L2!0.28!1.77!CREB3L2;;chr15:96869292..96869320,+!p15@NR2F2!0.28!1.69!NR2F2;;chr19:12175504..12175519,+!p2@ZNF844!0.28!1.69!ZNF844;;chr20:48807648..48807671,+!p9@CEBPB!0.28!1.69!CEBPB;;chr13:41635486..41635497,-!p11@ELF1!0.28!1.60!ELF1;;chr7:152133109..152133116,-!p2@MLL3!0.28!1.42!MLL3;;chr14:33408072..33408114,+!p2@NPAS3!0.28!1.24!NPAS3;;chr1:150849208..150849217,-!p3@ARNT!0.28!1.24!ARNT;;chr1:170633262..170633285,+!p3@PRRX1!0.28!1.15!PRRX1;;chr15:35280863..35280908,-!p3@ZNF770!0.28!1.15!ZNF770;;chr15:66994523..66994541,+!p5@SMAD6!0.28!0.89!SMAD6;;chr16:79633883..79633892,-!p6@MAF!0.28!0.89!MAF;;chr18:53069219..53069253,-!p35@TCF4!0.28!0.89!TCF4;;chr19:3574330..3574393,+!p2@HMG20B!0.28!0.89!HMG20B;;chr10:131762504..131762555,-!p1@EBF3!0.28!0.89!EBF3;;chr10:51585449..51585487,+!p6@NCOA4!0.28!0.89!NCOA4;;chr10:63816978..63816993,+!p12@ARID5B!0.28!0.89!ARID5B;;chr11:12696579..12696611,+!p4@TEAD1!0.28!0.89!TEAD1;;chr11:16133391..16133439,-!p6@SOX6!0.28!0.89!SOX6;;chr11:16629369..16629392,-!p5@SOX6!0.28!0.89!SOX6;;chr12:8186270..8186292,+!p3@FOXJ2!0.28!0.89!FOXJ2;;chrX:56258900..56258917,+!p4@KLF8!0.28!0.89!KLF8;;chr5:172483414..172483425,+!p3@C5orf41!0.28!0.89!CREBRF;;chr6:28321909..28321965,-!p3@ZNF323!0.28!0.89!ZNF323;;chr7:28763873..28763898,+!p7@CREB5!0.28!0.89!CREB5;;chr1:24645921..24645973,+!p2@GRHL3!0.28!0.89!GRHL3;;chr20:50179334..50179343,-!p3@NFATC2!0.28!0.89!NFATC2;;chr2:176969179..176969226,+!p2@HOXD11!0.28!0.89!HOXD11;;chr2:46612729..46612751,+!p27@EPAS1!0.28!0.89!EPAS1;;chr2:85981107..85981120,+!p3@ATOH8!0.28!0.89!ATOH8;;chr3:114819047..114819069,-!p16@ZBTB20!0.28!0.89!ZBTB20;;chr3:168865144..168865160,-!p6@MECOM!0.28!0.89!MECOM;;chr1:156470556..156470643,-!p1@MEF2D!0.27!67.95!MEF2D;;chr2:178129414..178129517,-!p1@NFE2L2!0.27!67.24!NFE2L2;;chr5:131826457..131826514,-!p1@IRF1!0.27!66.44!IRF1;;chrX:53254373..53254406,-!p1@KDM5C!0.27!61.65!KDM5C;;chr2:48541789..48541874,+!p1@FOXN2!0.27!38.05!FOXN2;;chr7:44925044..44925156,-!p1@PURB!0.27!12.68!PURB;;chr17:38256822..38256851,-!p1@NR1D1!0.27!12.68!NR1D1;;chr1:28995258..28995322,+!p1@GMEB1!0.27!12.06!GMEB1;;chr4:87928413..87928433,+!p3@AFF1!0.27!9.93!AFF1;;chr19:58144529..58144579,+!p1@ZNF211!0.27!8.52!ZNF211;;chr1:161736072..161736093,+!p2@ATF6!0.27!7.18!ATF6;;chr18:72922777..72922808,+!p2@TSHZ1!0.27!7.18!TSHZ1;;chr19:46272462..46272562,-!p1@SIX5!0.27!6.30!SIX5;;chr3:141087393..141087426,+!p3@ZBTB38!0.27!6.03!ZBTB38;;chrX:106960180..106960197,-!p2@TSC22D3!0.27!5.68!TSC22D3;;chr3:114866084..114866118,-!p2@ZBTB20!0.27!5.32!ZBTB20;;chr12:46123050..46123129,+!p2@ARID2!0.27!4.52!ARID2;;chr12:19592493..19592524,+!p3@AEBP2!0.27!3.81!AEBP2;;chr8:28243934..28243993,-!p3@ZNF395!0.27!3.81!ZNF395;;chr14:35872962..35873025,-!p3@NFKBIA!0.27!3.46!NFKBIA;;chr16:8962544..8962584,-!p2@CARHSP1!0.27!3.10!CARHSP1;;chr19:50879683..50879695,+!p2@NR1H2!0.27!2.93!NR1H2;;chr18:32924431..32924440,-!p2@ZNF24!0.27!2.13!ZNF24;;chr18:3449695..3449712,+!p9@TGIF1!0.27!1.77!TGIF1;;chr5:134369905..134369972,-!p1@PITX1!0.27!1.77!PITX1;;chr1:170633348..170633399,+!p2@PRRX1!0.27!1.51!PRRX1;;chr8:106330696..106330719,+!p2@ZFPM2!0.27!1.33!ZFPM2;;chr7:17369649..17369664,+!p4@AHR!0.27!1.24!AHR;;chr17:46620898..46620927,-!p9@HOXB2!0.27!1.15!HOXB2;;chr6:35465058..35465077,-!p2@TEAD3!0.27!0.98!TEAD3;;chr18:45457192..45457278,-!p1@SMAD2!0.26!27.05!SMAD2;;chr19:50169064..50169121,-!p1@IRF3!0.26!22.62!IRF3;;chr9:94186101..94186122,-!p1@NFIL3!0.26!22.62!NFIL3;;chr17:2304333..2304364,-!p1@MNT!0.26!22.26!MNT;;chr21:30671235..30671253,+!p1@BACH1!0.26!20.40!BACH1;;chr4:38665769..38665801,+!p2@KLF3!0.26!14.37!KLF3;;chr19:21950362..21950388,-!p1@ZNF100!0.26!14.28!ZNF100;;chr19:18392236..18392248,-!p2@JUND!0.26!10.38!JUND;;chr6:157100031..157100112,+!p2@ARID1B!0.26!8.34!ARID1B;;chr17:4981745..4981810,+!p1@ZFP3!0.26!7.45!ZFP3;;chr12:54772960..54773015,-!p3@ZNF385A!0.26!7.36!ZNF385A;;chr4:106067811..106067854,+!p2@TET2!0.26!6.92!TET2;;chr3:187463179..187463201,-!p2@BCL6!0.26!6.03!BCL6;;chr9:137218341..137218361,+!p2@RXRA!0.26!6.0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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001987;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003124;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0006603,UBERON:0005795,UBERON:0004872,UBERON:0003124,UBERON:0010316
 |fonse_cell_line=
@@ Line 40: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/placenta%252c%2520adult%252c%2520pool1.CNhs10627.10021-101D3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/placenta%252c%2520adult%252c%2520pool1.CNhs10627.10021-101D3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/placenta%252c%2520adult%252c%2520pool1.CNhs10627.10021-101D3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/placenta%252c%2520adult%252c%2520pool1.CNhs10627.10021-101D3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/placenta%252c%2520adult%252c%2520pool1.CNhs10627.10021-101D3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10021-101D3
 |is_a=EFO:0002091;;FF:0010021
 |is_obsolete=
 |library_id=CNhs10627
+|library_id_phase_based=2:CNhs10627
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10021
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10021
 |name=placenta, adult, pool1
 |namespace=FANTOM5
@@ Line 49: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10627,LSID657,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 88: / Line 101: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10021-101D3;search_select_hide=table117:FF:10021-101D3
 }}

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FF:10021-101D3: Difference between revisions

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Latest revision as of 12:14, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0