FF:10158-103A5: Difference between revisions

Revision as of 14:46, 15 May 2017

Name:	substantia nigra, adult, donor10252
Species:	Human (Homo sapiens)
Library ID:	CNhs12318
Sample type:	tissues
Genomic View:	UCSC
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	substantia nigra
dev stage	NA
sex	female
age	76
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005263

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12318		CAGE		DRX008735		DRR009607

Accession ID Hg19

Library id		BAM		CTSS
CNhs12318		DRZ001032		DRZ002417

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.0582
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.838
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.00209
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.3
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.0582
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.109
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.109
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0582
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.155
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0582
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.109
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.0582
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.435
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0582
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0582
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.231
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.576
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.235
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0582
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.171
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.155
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0586
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.925
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0582
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.316
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.0582
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0582
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.109
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.109
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0582
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.109
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.109
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0268
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.435
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.109
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.109
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.562
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.0582
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.399
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	1.048
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0582
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.36
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.368
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.109
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.109
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.0582
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.79
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.134
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.235
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.109
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0156
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12318

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0601
MA0003.1	MA0003.1	0.145
MA0004.1	MA0004.1	0.375
MA0006.1	MA0006.1	0.445
MA0007.1	MA0007.1	0.76
MA0009.1	MA0009.1	0.171
MA0014.1	MA0014.1	0.801
MA0017.1	MA0017.1	0.00623
MA0018.2	MA0018.2	0.831
MA0019.1	MA0019.1	0.835
MA0024.1	MA0024.1	0.61
MA0025.1	MA0025.1	0.0894
MA0027.1	MA0027.1	0.715
MA0028.1	MA0028.1	0.0654
MA0029.1	MA0029.1	0.0725
MA0030.1	MA0030.1	0.072
MA0031.1	MA0031.1	0.0106
MA0035.2	MA0035.2	0.0267
MA0038.1	MA0038.1	0.47
MA0039.2	MA0039.2	0.207
MA0040.1	MA0040.1	0.863
MA0041.1	MA0041.1	0.38
MA0042.1	MA0042.1	0.774
MA0043.1	MA0043.1	0.585
MA0046.1	MA0046.1	0.00113
MA0047.2	MA0047.2	0.897
MA0048.1	MA0048.1	0.196
MA0050.1	MA0050.1	0.159
MA0051.1	MA0051.1	0.18
MA0052.1	MA0052.1	0.24
MA0055.1	MA0055.1	0.0047
MA0057.1	MA0057.1	0.76
MA0058.1	MA0058.1	0.609
MA0059.1	MA0059.1	0.152
MA0060.1	MA0060.1	0.605
MA0061.1	MA0061.1	7.10675e-4
MA0062.2	MA0062.2	0.00275
MA0065.2	MA0065.2	0.00385
MA0066.1	MA0066.1	0.0108
MA0067.1	MA0067.1	0.703
MA0068.1	MA0068.1	0.949
MA0069.1	MA0069.1	0.987
MA0070.1	MA0070.1	0.687
MA0071.1	MA0071.1	0.0302
MA0072.1	MA0072.1	0.389
MA0073.1	MA0073.1	0.606
MA0074.1	MA0074.1	0.258
MA0076.1	MA0076.1	0.116
MA0077.1	MA0077.1	6.31101e-4
MA0078.1	MA0078.1	0.535
MA0079.2	MA0079.2	0.799
MA0080.2	MA0080.2	4.69804e-5
MA0081.1	MA0081.1	0.0315
MA0083.1	MA0083.1	0.0102
MA0084.1	MA0084.1	0.0755
MA0087.1	MA0087.1	0.33
MA0088.1	MA0088.1	0.654
MA0090.1	MA0090.1	0.259
MA0091.1	MA0091.1	0.752
MA0092.1	MA0092.1	0.215
MA0093.1	MA0093.1	0.479
MA0099.2	MA0099.2	3.65352e-25
MA0100.1	MA0100.1	0.392
MA0101.1	MA0101.1	3.92553e-4
MA0102.2	MA0102.2	0.323
MA0103.1	MA0103.1	0.0153
MA0104.2	MA0104.2	0.438
MA0105.1	MA0105.1	3.56372e-5
MA0106.1	MA0106.1	0.0217
MA0107.1	MA0107.1	1.60214e-4
MA0108.2	MA0108.2	0.0578
MA0111.1	MA0111.1	0.878
MA0112.2	MA0112.2	0.00173
MA0113.1	MA0113.1	0.584
MA0114.1	MA0114.1	0.0148
MA0115.1	MA0115.1	0.6
MA0116.1	MA0116.1	0.00129
MA0117.1	MA0117.1	0.64
MA0119.1	MA0119.1	0.539
MA0122.1	MA0122.1	0.627
MA0124.1	MA0124.1	0.991
MA0125.1	MA0125.1	0.64
MA0131.1	MA0131.1	0.684
MA0135.1	MA0135.1	0.469
MA0136.1	MA0136.1	4.39472e-8
MA0137.2	MA0137.2	0.0976
MA0138.2	MA0138.2	0.843
MA0139.1	MA0139.1	0.552
MA0140.1	MA0140.1	0.105
MA0141.1	MA0141.1	0.00524
MA0142.1	MA0142.1	0.437
MA0143.1	MA0143.1	0.0196
MA0144.1	MA0144.1	0.86
MA0145.1	MA0145.1	0.416
MA0146.1	MA0146.1	0.0765
MA0147.1	MA0147.1	0.197
MA0148.1	MA0148.1	0.86
MA0149.1	MA0149.1	0.0147
MA0150.1	MA0150.1	7.60868e-5
MA0152.1	MA0152.1	0.41
MA0153.1	MA0153.1	0.111
MA0154.1	MA0154.1	0.0476
MA0155.1	MA0155.1	0.514
MA0156.1	MA0156.1	4.85463e-6
MA0157.1	MA0157.1	0.146
MA0159.1	MA0159.1	0.0279
MA0160.1	MA0160.1	0.0351
MA0162.1	MA0162.1	0.193
MA0163.1	MA0163.1	3.34007e-8
MA0164.1	MA0164.1	0.688
MA0258.1	MA0258.1	0.0483
MA0259.1	MA0259.1	0.773

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12318

Novel motif	Logo	P-value
1	1	0.164
10	10	0.101
100	100	0.725
101	101	0.385
102	102	0.953
103	103	0.0171
104	104	0.0981
105	105	0.0978
106	106	0.0104
107	107	0.149
108	108	0.893
109	109	0.00121
11	11	0.0139
110	110	0.0653
111	111	0.5
112	112	0.257
113	113	0.0688
114	114	0.276
115	115	0.892
116	116	0.411
117	117	0.0324
118	118	0.413
119	119	0.644
12	12	0.211
120	120	0.166
121	121	0.467
122	122	0.737
123	123	0.0219
124	124	0.526
125	125	0.849
126	126	0.126
127	127	0.3
128	128	0.127
129	129	0.427
13	13	0.0091
130	130	0.112
131	131	0.021
132	132	0.261
133	133	0.192
134	134	0.383
135	135	0.265
136	136	0.00209
137	137	0.84
138	138	0.961
139	139	0.442
14	14	0.928
140	140	0.797
141	141	0.447
142	142	0.406
143	143	0.0238
144	144	0.53
145	145	0.596
146	146	0.567
147	147	0.773
148	148	0.859
149	149	0.125
15	15	0.0656
150	150	0.0729
151	151	0.933
152	152	0.0746
153	153	0.905
154	154	0.182
155	155	0.921
156	156	0.403
157	157	0.31
158	158	0.0858
159	159	0.00307
16	16	0.0297
160	160	0.224
161	161	0.301
162	162	0.703
163	163	0.578
164	164	0.0323
165	165	0.197
166	166	0.739
167	167	0.485
168	168	0.89
169	169	0.0579
17	17	0.0701
18	18	0.0376
19	19	0.479
2	2	0.781
20	20	0.321
21	21	0.058
22	22	0.276
23	23	0.324
24	24	0.0435
25	25	0.587
26	26	0.0635
27	27	0.336
28	28	0.921
29	29	0.00251
3	3	0.143
30	30	0.499
31	31	0.975
32	32	0.00856
33	33	0.0759
34	34	0.692
35	35	0.539
36	36	0.424
37	37	0.054
38	38	0.682
39	39	0.314
4	4	0.863
40	40	0.166
41	41	0.296
42	42	0.416
43	43	0.175
44	44	0.0848
45	45	0.59
46	46	0.0302
47	47	0.134
48	48	0.133
49	49	0.695
5	5	0.788
50	50	0.687
51	51	0.308
52	52	0.626
53	53	0.168
54	54	0.752
55	55	0.892
56	56	0.729
57	57	0.619
58	58	0.431
59	59	0.0481
6	6	0.494
60	60	0.115
61	61	0.237
62	62	0.191
63	63	0.666
64	64	0.132
65	65	0.355
66	66	0.0634
67	67	0.498
68	68	0.337
69	69	0.471
7	7	0.142
70	70	0.19
71	71	0.0122
72	72	0.159
73	73	0.0422
74	74	0.623
75	75	0.0218
76	76	0.342
77	77	0.123
78	78	0.00393
79	79	0.54
8	8	0.0669
80	80	0.325
81	81	0.632
82	82	0.789
83	83	0.0853
84	84	0.471
85	85	0.848
86	86	0.197
87	87	2.19812e-4
88	88	0.562
89	89	0.0771
9	9	0.265
90	90	0.366
91	91	0.677
92	92	0.573
93	93	0.884
94	94	0.273
95	95	0.02
96	96	0.547
97	97	0.771
98	98	0.237
99	99	0.566

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12318

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010158 human substantia nigra - adult donor sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002038 (substantia nigra)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009663 (telencephalic nucleus)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0009661 (midbrain nucleus)
0000125 (neural nucleus)
0002950 (regional part of midbrain)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001893 (telencephalon)
0001890 (forebrain)
0001891 (midbrain)
0010011 (collection of basal ganglia)
0000454 (cerebral subcortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010158 (human substantia nigra - adult donor sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.81!650.91!TSC22D4;;chr22:38380543..38380569,-!p1@SOX10!2.53!339.28!SOX10;;chr21:34442439..34442455,+!p1@OLIG1!2.45!277.65!OLIG1;;chr11:61520075..61520136,+!p1@C11orf9!2.33!437.62!C11orf9;;chr8:53322304..53322340,-!p1@ST18!2.29!193.08!ST18;;chr10:134599649..134599653,-!p1@NKX6-2!2.12!129.87!NKX6-2;;chr2:145277882..145277967,-!p3@ZEB2!1.93!141.19!ZEB2;;chr16:1031762..1031781,+!p1@SOX8!1.91!80.27!SOX8;;chr10:48355030..48355090,+!p1@ZNF488!1.87!93.17!ZNF488;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.87!73.96!POU3F3;;chr8:53322347..53322378,-!p2@ST18!1.86!71.67!ST18;;chr21:34398234..34398250,+!p1@OLIG2!1.85!70.38!OLIG2;;chr3:181429704..181429722,+!p1@SOX2!1.81!64.22!SOX2;;chr12:26277817..26277863,-!p2@BHLHE41!1.80!82.71!BHLHE41;;chr12:26277956..26277980,-!p1@BHLHE41!1.74!184.33!BHLHE41;;chr21:34442540..34442560,+!p2@OLIG1!1.74!54.33!OLIG1;;chr11:113930425..113930471,+!p1@ZBTB16!1.71!71.96!ZBTB16;;chr19:46801639..46801699,+!p1@HIF3A!1.67!46.01!HIF3A;;chr11:47400078..47400106,-!p1@SPI1!1.60!38.42!SPI1;;chr3:126076242..126076257,-!p1@KLF15!1.59!47.30!KLF15;;chr4:81118647..81118666,+!p1@PRDM8!1.56!46.73!PRDM8;;chr16:85932760..85932775,+!p1@IRF8!1.56!35.40!IRF8;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.56!35.26!PEG3;;chr9:114287433..114287513,+!p1@ZNF483!1.54!84.14!ZNF483;;chr1:214161272..214161322,+!p1@PROX1!1.49!41.43!PROX1;;chr12:106976774..106976788,+!p1@RFX4!1.48!29.38!RFX4;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.45!27.23!POU3F3;;chr19:13135386..13135435,+!p4@NFIX!1.44!26.52!NFIX;;chr12:106976678..106976708,+!p2@RFX4!1.41!24.51!RFX4;;chr15:80696703..80696754,+!p1@ARNT2!1.40!31.68!ARNT2;;chr12:54779511..54779577,-!p5@ZNF385A!1.37!22.22!ZNF385A;;chr3:181429741..181429767,+!p2@SOX2!1.35!21.64!SOX2;;chr16:79634624..79634642,-!p1@MAF!1.34!80.70!MAF;;chr19:30863271..30863338,+!p1@ZNF536!1.34!20.78!ZNF536;;chr16:51185172..51185197,-!p1@SALL1!1.32!20.07!SALL1;;chr3:126076264..126076305,-!p2@KLF15!1.31!26.80!KLF15;;chr2:178128250..178128293,-!p6@NFE2L2!1.30!47.02!NFE2L2;;chr7:115670804..115670825,-!p1@TFEC!1.30!18.78!TFEC;;chr19:21512144..21512191,-!p2@ZNF708!1.29!85.00!ZNF708;;chr7:63505799..63505904,+!p1@ZNF727!1.29!18.49!ZNF727;;chr12:26277929..26277955,-!p3@BHLHE41!1.28!25.37!BHLHE41;;chr6:28321971..28321995,-!p1@ZNF323!1.27!17.77!ZNF323;;chr16:51185318..51185348,-!p2@SALL1!1.27!17.49!SALL1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.91!ZBED1;;chr2:68592406..68592424,+!p1@PLEK!1.24!16.48!PLEK;;chr1:61548069..61548102,+!p3@NFIA!1.23!38.56!NFIA;;chr17:47439437..47439533,-!p1@ZNF652!1.22!124.28!ZNF652;;chr19:13135582..13135600,+!p3@NFIX!1.22!15.48!NFIX;;chr10:64134120..64134183,+!p1@ZNF365!1.21!18.49!ZNF365;;chr19:21512115..21512135,-!p3@ZNF708!1.20!30.53!ZNF708;;chr14:33408072..33408114,+!p2@NPAS3!1.19!17.34!NPAS3;;chr16:67198633..67198671,+!p1@HSF4!1.19!14.33!HSF4;;chr20:21494654..21494678,-!p2@NKX2-2!1.19!14.33!NKX2-2;;chr2:214016314..214016343,-!p2@IKZF2!1.18!23.65!IKZF2;;chr22:41763452..41763466,+!p2@TEF!1.17!13.76!TEF;;chr12:103351444..103351461,+!p1@ASCL1!1.17!13.76!ASCL1;;chr6:19837592..19837621,+!p1@ID4!1.16!82.56!ID4;;chr1:40105299..40105326,-!p1@HEYL!1.16!13.47!HEYL;;chr8:53322411..53322422,-!p6@ST18!1.16!13.33!ST18;;chr2:95963052..95963106,+!p1@KCNIP3!1.15!13.19!KCNIP3;;chr20:50159198..50159299,-!p1@NFATC2!1.14!18.63!NFATC2;;chr3:114343039..114343085,-!p8@ZBTB20!1.14!12.76!ZBTB20;;chr19:21512202..21512225,-!p1@ZNF708!1.13!64.36!ZNF708;;chr3:114343768..114343822,-!p1@ZBTB20!1.13!54.33!ZBTB20;;chr2:177053386..177053402,+!p1@HOXD1!1.13!12.61!HOXD1;;chr19:38085768..38085821,+!p1@ZNF540!1.12!18.20!ZNF540;;chr14:33403881..33403924,+!p1@NPAS3!1.12!12.33!NPAS3;;chr21:39870339..39870443,-!p1@ERG!1.12!12.04!ERG;;chr7:50344289..50344323,+!p1@IKZF1!1.11!11.75!IKZF1;;chr3:187463179..187463201,-!p2@BCL6!1.10!48.45!BCL6;;chr6:41701557..41701578,-!p3@TFEB!1.10!11.47!TFEB;;chr19:53636125..53636178,-!p1@ZNF415!1.09!31.96!ZNF415;;chr16:79634595..79634620,-!p2@MAF!1.09!20.93!MAF;;chr11:113930291..113930339,+!p2@ZBTB16!1.09!18.78!ZBTB16;;chr21:34442584..34442587,+!p3@OLIG1!1.09!11.32!OLIG1;;chr4:26344778..26344807,+!p8@RBPJ!1.09!11.32!RBPJ;;chr2:95963120..95963136,+!p2@KCNIP3!1.09!11.18!KCNIP3;;chr6:126112074..126112144,+!p1@NCOA7!1.08!148.93!NCOA7;;chr2:145275982..145276003,-!p7@ZEB2!1.07!10.75!ZEB2;;chr19:46800289..46800327,+!p2@HIF3A!1.07!10.75!HIF3A;;chr17:38219209..38219230,+!p1@THRA!1.06!137.46!THRA;;chr14:73360799..73360817,-!p1@DPF3!1.06!36.98!DPF3;;chr11:113930401..113930422,+!p3@ZBTB16!1.06!10.61!ZBTB16;;chr16:67198683..67198698,+!p2@HSF4!1.06!10.46!HSF4;;chr6:41701581..41701613,-!p2@TFEB!1.06!10.46!TFEB;;chr6:126070769..126070801,+!p1@HEY2!1.05!11.75!HEY2;;chr8:53322384..53322393,-!p7@ST18!1.05!10.18!ST18;;chr18:52989031..52989079,-!p2@TCF4!1.03!23.08!TCF4;;chr15:42749722..42749739,-!p2@ZFP106!1.03!17.63!ZFP106;;chr2:166326200..166326216,+!p1@CSRNP3!1.03!14.33!CSRNP3;;chr7:28725740..28725778,+!p1@CREB5!1.01!83.14!CREB5;;chr17:17726907..17726958,-!p2@SREBF1!1.01!58.91!SREBF1;;chr11:47400062..47400077,-!p2@SPI1!1.01!9.32!SPI1;;chr12:26277798..26277809,-!p5@BHLHE41!1.01!9.17!BHLHE41;;chr20:21494684..21494708,-!p1@NKX2-2!1.01!9.17!NKX2-2;;chr18:6414884..6414942,-!p1@L3MBTL4!1.00!11.47!L3MBTL4;;chr3:147127142..147127168,+!p1@ZIC1!1.00!8.89!ZIC1;;chr10:48359344..48359376,+!p2@ZNF488!0.98!8.60!ZNF488;;chr14:33403648..33403710,+!p3@NPAS3!0.98!8.60!NPAS3;;chr7:64023441..64023462,-!p1@ZNF680!0.97!68.09!ZNF680;;chr9:14314946..14314983,-!p8@NFIB!0.97!8.31!NFIB;;chrX:70315688..70315709,+!p1@FOXO4!0.96!19.49!FOXO4;;chr18:47814186..47814232,-!p2@CXXC1!0.96!17.20!CXXC1;;chr10:111987079..111987115,+!p3@MXI1!0.96!11.32!MXI1;;chr11:31832658..31832681,-!p1@PAX6!0.96!8.17!PAX6;;chr4:26344754..26344772,+!p10@RBPJ!0.96!8.17!RBPJ;;chr9:1050331..1050363,+!p1@DMRT2!0.96!8.17!DMRT2;;chr3:114819124..114819200,-!p3@ZBTB20!0.95!18.92!ZBTB20;;chr16:86544113..86544145,+!p1@FOXF1!0.95!10.03!FOXF1;;chr6:41701898..41701939,-!p5@TFEB!0.95!7.88!TFEB;;chr11:8102846..8102892,+!p1@TUB!0.94!11.04!TUB;;chr1:61924375..61924380,+!p6@NFIA!0.94!11.04!NFIA;;chr1:170632285..170632309,+!p1@PRRX1!0.94!8.74!PRRX1;;chr17:53342311..53342400,+!p1@HLF!0.93!8.60!HLF;;chr10:64134045..64134083,+!p3@ZNF365!0.93!7.60!ZNF365;;chr12:54778471..54778528,-!p1@ZNF385A!0.93!7.60!ZNF385A;;chr17:70117153..70117174,+!p1@SOX9!0.92!79.27!SOX9;;chr3:114866084..114866118,-!p2@ZBTB20!0.92!27.52!ZBTB20;;chr15:57210961..57211012,+!p3@TCF12!0.92!24.08!TCF12;;chr5:124084493..124084524,-!p2@ZNF608!0.92!16.91!ZNF608;;chr8:80679993..80680011,-!p1@HEY1!0.92!10.75!HEY1;;chr16:79633894..79633954,-!p3@MAF!0.91!14.05!MAF;;chr12:125003087..125003141,-!p4@NCOR2!0.91!9.32!NCOR2;;chr5:71803177..71803255,-!p1@ZNF366!0.91!7.17!ZNF366;;chr7:50343634..50343717,+!p2@IKZF1!0.91!7.17!IKZF1;;chr5:92918919..92918942,+!p1@NR2F1!0.90!32.11!NR2F1;;chr15:57511609..57511651,+!p2@TCF12!0.90!11.90!TCF12;;chr20:2673383..2673441,+!p1@EBF4!0.90!11.18!EBF4;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.90!6.88!ZNF676;;chr5:76383017..76383068,-!p1@ZBED3!0.89!25.80!ZBED3;;chr9:73029219..73029289,-!p2@KLF9!0.89!21.50!KLF9;;chr2:74229812..74229867,+!p1@TET3!0.89!17.49!TET3;;chr15:41913690..41913753,+!p2@MGA!0.89!17.06!MGA;;chr7:86781858..86781879,+!p3@DMTF1!0.89!11.18!DMTF1;;chr7:128577972..128578047,+!p1@IRF5!0.89!10.89!IRF5;;chr16:4323246..4323299,-!p5@TFAP4!0.89!6.74!TFAP4;;chr19:37096139..37096170,-!p2@ZNF529!0.88!19.21!ZNF529;;chr17:7492684..7492778,-!p2@SOX15!0.88!14.48!SOX15;;chr19:57183114..57183145,-!p1@ZNF835!0.88!7.45!ZNF835;;chr11:34654104..34654118,+!p5@EHF!0.88!6.59!EHF;;chr19:13134457..13134462,+!p5@NFIX!0.87!11.90!NFIX;;chr5:178368186..178368238,+!p1@ZNF454!0.87!11.75!ZNF454;;chrX:107018969..107019024,-!p6@TSC22D3!0.87!9.03!TSC22D3;;chr8:30890810..30890880,-!p1@PURG!0.87!6.45!PURG;;chr7:28448965..28448994,+!p2@CREB5!0.86!23.08!CREB5;;chr3:52001396..52001425,-!p4@PCBP4!0.86!11.47!PCBP4;;chr20:62680984..62680999,-!p1@SOX18!0.86!8.46!SOX18;;chr9:77112244..77112262,+!p1@RORB!0.86!7.02!RORB;;chr10:111985777..111985788,+!p4@MXI1!0.86!6.16!MXI1;;chr5:172483347..172483407,+!p1@C5orf41!0.85!48.88!CREBRF;;chr3:52001426..52001447,-!p3@PCBP4!0.85!17.92!PCBP4;;chr5:2751762..2751784,-!p1@IRX2!0.85!6.02!IRX2;;chr5:88178983..88179012,-!p1@MEF2C!0.84!49.17!MEF2C;;chr19:11959532..11959593,+!p1@ZNF439!0.84!23.94!ZNF439;;chr20:51588873..51588953,+!p1@TSHZ2!0.84!8.03!TSHZ2;;chr5:124082322..124082364,-!p1@ZNF608!0.83!15.62!ZNF608;;chr19:57019215..57019250,+!p1@ZNF471!0.83!9.03!ZNF471;;chr1:47697539..47697573,-!p3@TAL1!0.83!5.73!TAL1;;chr6:15401104..15401166,+!p5@JARID2!0.83!5.73!JARID2;;chr8:10588010..10588030,-!p1@SOX7!0.83!5.73!SOX7;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!0.83!5.73!POU3F3;;chr12:106976656..106976672,+!p4@RFX4!0.83!5.73!RFX4;;chr19:58446721..58446779,-!p1@ZNF418!0.82!16.34!ZNF418;;chr6:91006518..91006570,-!p1@BACH2!0.82!13.47!BACH2;;chr16:51185439..51185450,-!p8@SALL1!0.82!5.59!SALL1;;chr2:145277640..145277771,-!p1@ZEB2!0.81!78.26!ZEB2;;chrX:101186981..101187030,-!p1@ZMAT1!0.81!18.78!ZMAT1;;chr19:38085633..38085706,-!p1@ZNF571!0.81!15.19!ZNF571;;chrX:107019163..107019179,-!p7@TSC22D3!0.81!6.45!TSC22D3;;chr7:86781916..86781963,+!p2@DMTF1!0.80!24.94!DMTF1;;chr18:22932080..22932170,-!p1@ZNF521!0.80!24.22!ZNF521;;chr8:77593474..77593612,+!p1@ZFHX4!0.80!24.08!ZFHX4;;chr7:64023410..64023428,-!p2@ZNF680!0.80!8.60!ZNF680;;chr7:6655225..6655279,+!p1@ENST00000457543!0.80!8.31!ZNF853;;chr18:53068911..53068935,-!p4@TCF4!0.80!6.02!TCF4;;chr12:24102576..24102623,-!p2@SOX5!0.80!5.30!SOX5;;chr10:38265517..38265591,-!p1@ZNF25!0.79!21.64!ZNF25;;chr19:9879350..9879419,-!p2@ZNF846!0.79!11.75!ZNF846;;chr19:13213662..13213686,-!p1@LYL1!0.79!7.88!LYL1;;chr17:41277479..41277510,-!p5@BRCA1!0.79!7.45!BRCA1;;chr18:56530756..56530774,+!p6@ZNF532!0.79!7.02!ZNF532;;chr12:24715376..24715432,-!p1@SOX5!0.79!6.74!SOX5;;chr1:61548118..61548129,+!p9@NFIA!0.79!5.88!NFIA;;chr12:26276197..26276214,-!p8@BHLHE41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1316021..71316068,-!p1@NCOA2!0.37!19.21!NCOA2;;chr19:40562072..40562143,-!p1@ZNF780B!0.37!19.06!ZNF780B;;chr7:148959269..148959326,+!p1@ZNF783!0.37!16.91!ZNF783;;chr13:37393351..37393423,+!p1@RFXAP!0.37!15.19!RFXAP;;chr19:52643169..52643199,-!p1@ZNF616!0.37!12.04!ZNF616;;chr3:40518599..40518664,+!p1@ZNF619!0.37!11.75!ZNF619;;chr17:47439568..47439641,-!p2@ZNF652!0.37!11.47!ZNF652;;chr19:57922521..57922550,+!p1@ZNF17!0.37!7.88!ZNF17;;chr19:58694742..58694800,+!p2@ZNF274!0.37!7.88!ZNF274;;chr19:44576296..44576343,+!p2@ZNF284!0.37!7.74!ZNF284;;chr20:47894936..47895010,-!p2@ZNFX1!0.37!6.16!ZNFX1;;chr3:187463220..187463232,-!p3@BCL6!0.37!5.73!BCL6;;chr13:74708029..74708077,-!p2@KLF12!0.37!5.45!KLF12;;chr16:4323015..4323067,-!p2@TFAP4!0.37!5.02!TFAP4;;chr9:2015306..2015323,+!p3@SMARCA2!0.37!4.87!SMARCA2;;chr5:138647473..138647476,+!p6@MATR3!0.37!4.73!MATR3;;chr9:14083467..14083483,-!p4@NFIB!0.37!4.59!NFIB;;chr16:3313791..3313834,+!p2@ZNF263!0.37!4.01!ZNF263;;chr16:54320675..54320715,-!p1@IRX3!0.37!3.87!IRX3;;chr11:47270436..47270464,+!p2@NR1H3!0.37!3.73!NR1H3;;chr7:44924939..44924993,-!p2@PURB!0.37!3.44!PURB;;chr10:43932553..43932571,+!p2@ZNF487P!0.37!2.87!ZNF487P;;chr19:35417844..35417877,+!p2@ZNF30!0.37!2.44!ZNF30;;chr1:164528297..164528309,+!p9@PBX1!0.37!2.01!PBX1;;chr19:44764031..44764072,+!p1@ZNF233!0.37!1.86!ZNF233;;chr6:28973366..28973394,-!p2@ZNF311!0.37!1.86!ZNF311;;chr9:2017365..2017380,+!p9@SMARCA2!0.37!1.86!SMARCA2;;chr1:164528687..164528711,+!p6@PBX1!0.37!1.72!PBX1;;chr1:170632959..170632987,+!p4@PRRX1!0.37!1.58!PRRX1;;chr8:48650715..48650735,-!p1@CEBPD!0.36!265.18!CEBPD;;chrX:77041685..77041716,-!p1@ATRX!0.36!59.06!ATRX;;chr3:23986762..23986821,+!p1@NR1D2!0.36!31.68!NR1D2;;chr10:98592009..98592061,+!p1@C10orf12,p1@LCOR!0.36!29.81!LCOR;;chr19:53193731..53193767,-!p1@ZNF83!0.36!18.35!ZNF83;;chr20:25677465..25677497,-!p1@ZNF337!0.36!12.18!ZNF337;;chr1:14026671..14026705,+!p2@PRDM2!0.36!12.04!PRDM2;;chr19:58258167..58258201,+!p1@ZNF776!0.36!11.75!ZNF776;;chr17:16472486..16472533,-!p1@ZNF287!0.36!9.60!ZNF287;;chr12:72058130..72058189,+!p2@THAP2!0.36!8.17!THAP2;;chr15:71184724..71184778,-!p1@THAP10!0.36!7.17!THAP10;;chr19:56915668..56915732,+!p1@ZNF583!0.36!7.02!ZNF583;;chr16:29817433..29817468,+!p8@MAZ!0.36!5.73!MAZ;;chr8:123794102..123794160,+!p3@ZHX2!0.36!5.02!ZHX2;;chr20:25677443..25677464,-!p2@ZNF337!0.36!4.16!ZNF337;;chr19:56879472..56879529,+!p2@ZNF542!0.36!3.73!ZNF542;;chr7:1570388..1570418,+!p2@MAFK!0.36!3.73!MAFK;;chr17:7382834..7382855,-!p6@ZBTB4!0.36!2.72!ZBTB4;;chr17:7382891..7382905,-!p7@ZBTB4!0.36!2.72!ZBTB4;;chr19:37019569..37019593,-!p2@ZNF260!0.36!2.58!ZNF260;;chr9:4299959..4299974,-!p4@GLIS3!0.36!2.58!GLIS3;;chr19:37708814..37708838,+!p2@ZNF383!0.36!2.29!ZNF383;;chr19:53039233..53039247,+!p2@ZNF808!0.36!2.29!ZNF808;;chr10:98592776..98592796,+!p4@LCOR!0.36!2.15!LCOR;;chr8:116681275..116681290,-!p11@TRPS1!0.36!1.86!TRPS1;;chr6:151694975..151694979,-!p7@ZBTB2!0.36!1.72!ZBTB2;;chr3:14989138..14989151,+!p6@NR2C2!0.36!1.58!NR2C2;;chr2:85980919..85980942,+!p4@ATOH8!0.36!1.43!ATOH8;;chr2:100721881..100721904,-!p6@AFF3!0.36!1.29!AFF3;;chr2:145271342..145271377,-!p5@ZEB2!0.36!1.29!ZEB2;;chr3:114343870..114343887,-!p9@ZBTB20!0.36!1.29!ZBTB20;;chr3:141151009..141151033,+!p10@ZBTB38!0.36!1.29!ZBTB38;;chr4:149363662..149363688,-!p6@NR3C2!0.36!1.29!NR3C2;;chr4:38665935..38665944,+!p9@KLF3!0.36!1.29!KLF3;;chr10:64133862..64133884,+!p4@ZNF365!0.36!1.29!ZNF365;;chr11:113930355..113930366,+!p5@ZBTB16!0.36!1.29!ZBTB16;;chr12:104531768..104531782,-!p7@NFYB!0.36!1.29!NFYB;;chr12:24103844..24103880,-!p3@SOX5!0.36!1.29!SOX5;;chr12:51611583..51611612,-!p4@POU6F1!0.36!1.29!POU6F1;;chr14:33403860..33403874,+!p5@NPAS3!0.36!1.29!NPAS3;;chr19:46806868..46806883,+!p3@HIF3A!0.36!1.29!HIF3A;;chr1:214161428..214161437,+!p6@PROX1!0.36!1.29!PROX1;;chr1:2985760..2985774,+!p1@PRDM16!0.36!1.29!PRDM16;;chrX:136648279..136648295,+!p1@ZIC3!0.36!1.29!ZIC3;;chr9:14308004..14308041,-!p14@NFIB!0.36!1.29!NFIB;;chr5:124084466..124084484,-!p6@ZNF608!0.36!1.29!ZNF608;;chr5:139494422..139494433,+!p12@PURA!0.36!1.29!PURA;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000454;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002038;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002308;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009663
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=

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FF:10158-103A5: Difference between revisions

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Revision as of 14:46, 15 May 2017

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0