FFCP PHASE1:Mm9::chr9:108953667..108953733,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr9:108953667..108953733,+ to FFCP PHASE1:Mm9::chr9:108953667..108953733,+: NSchange) |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=66940 | |EntrezGene=66940 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=122 | |||
|TSSclassifier=NA | |||
|UniProt=Q9D7I0,G3UWC7,E9Q633,E9Q3X2,E9Q653 | |UniProt=Q9D7I0,G3UWC7,E9Q633,E9Q3X2,E9Q653 | ||
|association_with_transcript=0bp_to_ENSMUST00000120305,ENSMUST00000128976,ENSMUST00000135942,ENSMUST00000143754,ENSMUST00000154113,ENSMUST00000155541,uc009rro.1,uc009rrp.1_5end | |||
|cluster_id=chr9:108953667..108953733,+ | |||
|description=CAGE_peak_1_at_Shisa5_5end | |||
|id=chr9:108953667..108953733,+ | |||
|ontology_enrichment_celltype=CL:0000838!8.44e-09!12;CL:0000988!3.82e-08!32;CL:0002032!3.82e-08!32;CL:0000037!3.82e-08!32;CL:0000566!3.82e-08!32;CL:0000837!3.82e-08!32;CL:0000084!4.03e-08!11;CL:0000827!4.03e-08!11;CL:0002031!1.21e-07!25;CL:0000791!1.68e-07!9;CL:0000789!1.68e-07!9;CL:0002420!1.68e-07!9;CL:0002419!1.68e-07!9;CL:0000790!1.68e-07!9;CL:0000542!1.87e-07!13;CL:0000051!1.87e-07!13;CL:0000624!8.27e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,2.72e-10,12;CL:0000988,4.15e-10,32;CL:0002032,4.15e-10,32;CL:0000037,4.15e-10,32;CL:0000837,4.15e-10,32;CL:0002031,9.10e-10,25;CL:0000084,1.79e-09,11;CL:0000827,1.79e-09,11;CL:0000542,4.68e-09,13;CL:0000051,4.68e-09,13;CL:0000791,1.00e-08,9;CL:0000789,1.00e-08,9;CL:0002420,1.00e-08,9;CL:0002419,1.00e-08,9;CL:0000790,1.00e-08,9;CL:0000624,6.78e-08,8;CL:0000738,2.50e-07,17;CL:0002087,2.50e-07,17 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!1.34e-14!130;UBERON:0000925!1.34e-14!130;UBERON:0006595!1.34e-14!130;UBERON:0001007!4.06e-14!128;UBERON:0001555!4.06e-14!128;UBERON:0007026!4.06e-14!128;UBERON:0002193!6.06e-14!48;UBERON:0004921!3.36e-13!126;UBERON:0004185!3.36e-13!126;UBERON:0002390!2.67e-12!45;UBERON:0003061!2.67e-12!45;UBERON:0000077!3.13e-12!97;UBERON:0002405!4.05e-12!70;UBERON:0004177!1.30e-11!29;UBERON:0001041!2.99e-11!92;UBERON:0000926!7.61e-10!193;UBERON:0004120!7.61e-10!193;UBERON:0006603!7.61e-10!193;UBERON:0003104!1.14e-09!131;UBERON:0009142!1.14e-09!131;UBERON:0003408!2.30e-09!24;UBERON:0005057!4.62e-09!51;UBERON:0002370!6.79e-09!23;UBERON:0000974!6.79e-09!23;UBERON:0004807!6.79e-09!23;UBERON:0005058!6.79e-09!23;UBERON:0003351!6.79e-09!23;UBERON:0009113!6.79e-09!23;UBERON:0003295!6.79e-09!23;UBERON:0009722!6.79e-09!23;UBERON:0005562!6.79e-09!23;UBERON:0007690!6.79e-09!23;UBERON:0006562!6.86e-09!24;UBERON:0001557!6.86e-09!24;UBERON:0001042!6.86e-09!24;UBERON:0008814!6.86e-09!24;UBERON:0009145!6.86e-09!24;UBERON:0001004!7.44e-08!42;UBERON:0007023!1.16e-07!51;UBERON:0000065!1.89e-07!41;UBERON:0000072!5.46e-07!27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,7.43e-17,48;UBERON:0002405,7.43e-17,48;UBERON:0000077,1.98e-15,35;UBERON:0002390,7.40e-15,45;UBERON:0003061,7.40e-15,45;UBERON:0004177,1.03e-14,29;UBERON:0005057,1.03e-14,29;UBERON:0004119,1.60e-13,118;UBERON:0000925,1.60e-13,118;UBERON:0006595,1.60e-13,118;UBERON:0001007,5.22e-13,116;UBERON:0001555,5.22e-13,116;UBERON:0007026,5.22e-13,116;UBERON:0004921,5.02e-12,114;UBERON:0003408,5.64e-12,24;UBERON:0002370,2.12e-11,23;UBERON:0000974,2.12e-11,23;UBERON:0004807,2.12e-11,23;UBERON:0005058,2.12e-11,23;UBERON:0003351,2.12e-11,23;UBERON:0009113,2.12e-11,23;UBERON:0003295,2.12e-11,23;UBERON:0009722,2.12e-11,23;UBERON:0005562,2.12e-11,23;UBERON:0007690,2.12e-11,23;UBERON:0006562,2.25e-11,24;UBERON:0001557,2.25e-11,24;UBERON:0001042,2.25e-11,24;UBERON:0008814,2.25e-11,24;UBERON:0009145,2.25e-11,24;UBERON:0001041,9.03e-10,80;UBERON:0000072,4.42e-09,27;UBERON:0001004,5.89e-09,42;UBERON:0000065,1.80e-08,41;UBERON:0003081,4.93e-08,87;UBERON:0007023,3.29e-07,51;UBERON:0000949,4.14e-07,72;UBERON:0002530,4.65e-07,65 | |||
|phase1_expression=0,0,0.454999239389536,0,0,0.33575854382378,0.233612640595526,1929.23157554059,839.804727634692,978.623784552255,296.378302998349,189.139788977943,1723.30654748752,1868.61110170607,139.906099962578,210.169327550639,60.1623215190206,1102.69799900972,1005.59725606449,780.876959308376,16.2432684188543,27.0071387266408,16.9779862940308,88.3158173819605,68.5933750390838,0.57423196411502,0,0.646413698057667,10.4512880701006,16.1299283046356,9.97787297948871,0,0,0,0,0.166234645358492,0,2.09265815368454,0.7813353445238,1.57057123192139,1.76469446409304,0.683045484958446,1.94204141212461,0,0,0,0,0,0,0,0,0,1282.36245809928,1600.14888527703,1520.48834732051,0,0,0,0.202316460859598,0,0,0,0,0,0.988866362566974,0,0,0.384218305321555,0.207379224616955,0,0,0.285650984403804,0,0,0,0,0,0.127687338085188,0.307213066512487,0,0,0,0,0,0.15279824777681,0,0.284743361598206,0,11.2832028066444,0,1.73918693221007,5.16254326188832,0,0,1.29955283489534,0,36.3751048141237,0,0,0,0,0,0,0,0,0,0.505524445014783,51.1543781141389,1286.1444680755,10.2425075954729,1.04091196059682,0.913396434936424,0,1.80867168663147,1.29347577849275,2.01066546127481,0.247194967734374,26.6062816732637,76.9611180196391,1.7794353494215,17.6673214768315,7.75800405016355,26.0948465705371,0.292780797011547,0,68.4624907959025,37.2625037213412,15.5974710058286,24.2704133709554,0.299581278809645,1.83000241127451,0,0.695297280769106,0,0.20778804455956,0.162241263067758,0.203678727700633,27.9915683872709,1.51633655060205,4.62972082950243,0,0,0,0.30140963567143,0,0.2562274405697,0.0937017245597288,0.776110112217047,0,0,0,0.219195732427575,0,0.696504333044333,0,0,0.702213187313235,5.1469581422943,5.11494298912067,0,0,0,0.23674473558521,0.590292695242212,0.462801338662135,0,0.536546802799238,0.467061369468678,0.493679549740441,3.11918181750281,3.56702762001765,4.23979963533464,7.02560368931362,4.16039898157152,0.420579897128254,0,31.7202031664446,19.8337924997658,0,0.232236671860439,1.03093969057675,0.80673409849337,1.55664630691409,1.90225626112559,9.96511029243474,2.30578536613615,9.55073793441024,8.75408476981064,13.8424501854575,17.0775687644302,9.29393614461185,11.7493351220077,0.379335801906163,0.114248512609729,1.1270773567308,0.203651327845314,0,0.350679099451593,1.13825766823663,3.39503340353085,1.41298855057237,1.48076596706161,6.22550516883013,1.00107063429656,0.589676985339609,0,0.202860121388503,0.482354319504834,0.25462585178142,1.43848068725405,4.37765112292595,3.0201755450689,4.31304619582064,10.0478055870496,9.98520553966594,4.2938409251009,4.12614051100398,5.78932225636041,124.708403362458,0,0.162964976442026,0.339490171550376,0,0.502518772325447,0.952174563544055,0.975668239288994,21.5960147425482,20.5962161373361,25.0343986792255,65.8730525157267,63.3753883447837,37.1748080554485,3.01582567878545,4.35124547054968,48.1928987558655,46.3573733791951,0.80275294993896,0,0,1.00988370881749,0,0,0,0,0,0,0,0,0,0.321321316421807,6.81312408999689,0.712262414669021,0.488660878060728,9.56826713240706,30.5313818181915,0.485561272309963,0.302323556964751,1.50884063804718,3.2483208216885,7.07100840271033,2.32585463851399,4.72593848320757,8.91243445961803,26.8631244245444,3.16255825724996,12.3762651897824,0.340439605753788,0,0,0,0.177340233642274,0,0.164549020602121,0.304464949114599,8.68285319835728,3.60114520468494,1.54369878638473,3.2977250588296,0,0.72375509913787,0.716234064018819,0.328281799490123,21.2781010739791,0.741701208042039,352.50662708597,4.54051109519089,12.7784223885101,81.9402787970406,266.69043828372,215.509039160544,333.667658077938,317.969699679351,307.909541636256,11.4560474161814,0,0.609958401380546,0.86404272657441,0.836353184057875,1.31017538247707,0.539457385539283,2.47960367176008,1.83229159388821,9.33227807700909,60.8912526825187,0.56369293868419,0,0.496375471371293,0.388902376688095,0.129159823477731,0.675824501963113,1.40828686374905,1.0416350787516,0.314578033277133,0.241584120826006,0,261.657207880132,14.798940716182,35.1271473503709,42.3541882907612,40.9971133078532,50.0677014048788,124.762876601728,121.696170391852,98.9471209491847,88.6285161397648,109.497237058609,222.301425967375,149.801837433993,196.586949469399,1.81384306892169,0,0,0,8.30715254338419,16.1406928888016,8.79127796482872,5.57357785605571,10.5330141847426,0,0,0,0.343706364687375,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0.183843508450014,0.44449345560323,1.44224540067226,0.320919209591815,0.252697211763798,1.01391719956096,0.377252682772152,0.655490552289177,0.384150914429216,0.861532034334199,0,0.231768651889711,0.38581844092741,1.23625770240992,0.441596760403192,0.342869252385415,0.177475806159338,0.476872379894642,0.872078499793971,0.470546902076653,0.676916863133412,0.365855945745545,2.63069711437843,0.814824683075171,0.561142271657738,0.474540072496697,0.591026894253381,0.409231043169689,0.464810523557898,0.771626443924566,0,0.935726433781634,2.79332370262788,0.57386499620653,5.7353768971074,9.50658126043728 | |phase1_expression=0,0,0.454999239389536,0,0,0.33575854382378,0.233612640595526,1929.23157554059,839.804727634692,978.623784552255,296.378302998349,189.139788977943,1723.30654748752,1868.61110170607,139.906099962578,210.169327550639,60.1623215190206,1102.69799900972,1005.59725606449,780.876959308376,16.2432684188543,27.0071387266408,16.9779862940308,88.3158173819605,68.5933750390838,0.57423196411502,0,0.646413698057667,10.4512880701006,16.1299283046356,9.97787297948871,0,0,0,0,0.166234645358492,0,2.09265815368454,0.7813353445238,1.57057123192139,1.76469446409304,0.683045484958446,1.94204141212461,0,0,0,0,0,0,0,0,0,1282.36245809928,1600.14888527703,1520.48834732051,0,0,0,0.202316460859598,0,0,0,0,0,0.988866362566974,0,0,0.384218305321555,0.207379224616955,0,0,0.285650984403804,0,0,0,0,0,0.127687338085188,0.307213066512487,0,0,0,0,0,0.15279824777681,0,0.284743361598206,0,11.2832028066444,0,1.73918693221007,5.16254326188832,0,0,1.29955283489534,0,36.3751048141237,0,0,0,0,0,0,0,0,0,0.505524445014783,51.1543781141389,1286.1444680755,10.2425075954729,1.04091196059682,0.913396434936424,0,1.80867168663147,1.29347577849275,2.01066546127481,0.247194967734374,26.6062816732637,76.9611180196391,1.7794353494215,17.6673214768315,7.75800405016355,26.0948465705371,0.292780797011547,0,68.4624907959025,37.2625037213412,15.5974710058286,24.2704133709554,0.299581278809645,1.83000241127451,0,0.695297280769106,0,0.20778804455956,0.162241263067758,0.203678727700633,27.9915683872709,1.51633655060205,4.62972082950243,0,0,0,0.30140963567143,0,0.2562274405697,0.0937017245597288,0.776110112217047,0,0,0,0.219195732427575,0,0.696504333044333,0,0,0.702213187313235,5.1469581422943,5.11494298912067,0,0,0,0.23674473558521,0.590292695242212,0.462801338662135,0,0.536546802799238,0.467061369468678,0.493679549740441,3.11918181750281,3.56702762001765,4.23979963533464,7.02560368931362,4.16039898157152,0.420579897128254,0,31.7202031664446,19.8337924997658,0,0.232236671860439,1.03093969057675,0.80673409849337,1.55664630691409,1.90225626112559,9.96511029243474,2.30578536613615,9.55073793441024,8.75408476981064,13.8424501854575,17.0775687644302,9.29393614461185,11.7493351220077,0.379335801906163,0.114248512609729,1.1270773567308,0.203651327845314,0,0.350679099451593,1.13825766823663,3.39503340353085,1.41298855057237,1.48076596706161,6.22550516883013,1.00107063429656,0.589676985339609,0,0.202860121388503,0.482354319504834,0.25462585178142,1.43848068725405,4.37765112292595,3.0201755450689,4.31304619582064,10.0478055870496,9.98520553966594,4.2938409251009,4.12614051100398,5.78932225636041,124.708403362458,0,0.162964976442026,0.339490171550376,0,0.502518772325447,0.952174563544055,0.975668239288994,21.5960147425482,20.5962161373361,25.0343986792255,65.8730525157267,63.3753883447837,37.1748080554485,3.01582567878545,4.35124547054968,48.1928987558655,46.3573733791951,0.80275294993896,0,0,1.00988370881749,0,0,0,0,0,0,0,0,0,0.321321316421807,6.81312408999689,0.712262414669021,0.488660878060728,9.56826713240706,30.5313818181915,0.485561272309963,0.302323556964751,1.50884063804718,3.2483208216885,7.07100840271033,2.32585463851399,4.72593848320757,8.91243445961803,26.8631244245444,3.16255825724996,12.3762651897824,0.340439605753788,0,0,0,0.177340233642274,0,0.164549020602121,0.304464949114599,8.68285319835728,3.60114520468494,1.54369878638473,3.2977250588296,0,0.72375509913787,0.716234064018819,0.328281799490123,21.2781010739791,0.741701208042039,352.50662708597,4.54051109519089,12.7784223885101,81.9402787970406,266.69043828372,215.509039160544,333.667658077938,317.969699679351,307.909541636256,11.4560474161814,0,0.609958401380546,0.86404272657441,0.836353184057875,1.31017538247707,0.539457385539283,2.47960367176008,1.83229159388821,9.33227807700909,60.8912526825187,0.56369293868419,0,0.496375471371293,0.388902376688095,0.129159823477731,0.675824501963113,1.40828686374905,1.0416350787516,0.314578033277133,0.241584120826006,0,261.657207880132,14.798940716182,35.1271473503709,42.3541882907612,40.9971133078532,50.0677014048788,124.762876601728,121.696170391852,98.9471209491847,88.6285161397648,109.497237058609,222.301425967375,149.801837433993,196.586949469399,1.81384306892169,0,0,0,8.30715254338419,16.1406928888016,8.79127796482872,5.57357785605571,10.5330141847426,0,0,0,0.343706364687375,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0.183843508450014,0.44449345560323,1.44224540067226,0.320919209591815,0.252697211763798,1.01391719956096,0.377252682772152,0.655490552289177,0.384150914429216,0.861532034334199,0,0.231768651889711,0.38581844092741,1.23625770240992,0.441596760403192,0.342869252385415,0.177475806159338,0.476872379894642,0.872078499793971,0.470546902076653,0.676916863133412,0.365855945745545,2.63069711437843,0.814824683075171,0.561142271657738,0.474540072496697,0.591026894253381,0.409231043169689,0.464810523557898,0.771626443924566,0,0.935726433781634,2.79332370262788,0.57386499620653,5.7353768971074,9.50658126043728 | ||
|short_description=p1@Shisa5 | |||
}} | }} |
Latest revision as of 04:46, 26 September 2015
Short description: | p1@Shisa5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Shisa5_5end |
Coexpression cluster: | MCL_coexpression_mm9:122 |
Association with transcript: | 0bp_to_ENSMUST00000120305, ENSMUST00000128976, ENSMUST00000135942, ENSMUST00000143754, ENSMUST00000154113, ENSMUST00000155541, uc009rro.1, uc009rrp.1_5end |
EntrezGene: | Shisa5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 2.72e-10 | 12 |
hematopoietic cell | 4.15e-10 | 32 |
hematopoietic oligopotent progenitor cell | 4.15e-10 | 32 |
hematopoietic stem cell | 4.15e-10 | 32 |
hematopoietic multipotent progenitor cell | 4.15e-10 | 32 |
hematopoietic lineage restricted progenitor cell | 9.10e-10 | 25 |
T cell | 1.79e-09 | 11 |
pro-T cell | 1.79e-09 | 11 |
lymphocyte | 4.68e-09 | 13 |
common lymphoid progenitor | 4.68e-09 | 13 |
mature alpha-beta T cell | 1.00e-08 | 9 |
alpha-beta T cell | 1.00e-08 | 9 |
immature T cell | 1.00e-08 | 9 |
mature T cell | 1.00e-08 | 9 |
immature alpha-beta T cell | 1.00e-08 | 9 |
CD4-positive, alpha-beta T cell | 6.78e-08 | 8 |
leukocyte | 2.50e-07 | 17 |
nongranular leukocyte | 2.50e-07 | 17 |