FFCP PHASE1:Mm9::chr2:153475210..153475252,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr2:153475210..153475252,+ to FFCP PHASE1:Mm9::chr2:153475210..153475252,+: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=13436 | |EntrezGene=13436 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=97 | |||
|TSSclassifier=NA | |||
|UniProt=Q3KR45,O88509,A2AU59,A2AU58,Q541E5,A2AU57 | |UniProt=Q3KR45,O88509,A2AU59,A2AU58,Q541E5,A2AU57 | ||
|association_with_transcript=20bp_to_ENSMUST00000056495,ENSMUST00000088976,ENSMUST00000103150,ENSMUST00000109772,NM_001003960,NM_001003961,NM_001003963,NM_001122997,NM_010068,uc008nib.2,uc008nic.2,uc008nid.2,uc008nie.2,uc008nif.2,uc008nig.2,uc008nih.2,uc008nii.2,uc008nij.2_5end | |||
|cluster_id=chr2:153475210..153475252,+ | |||
|description=CAGE_peak_2_at_Dnmt3b_5end | |||
|id=chr2:153475210..153475252,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005057!5.05e-11!51;UBERON:0001048!9.64e-10!147;UBERON:0001041!1.01e-09!92;UBERON:0000949!1.71e-09!72;UBERON:0000077!3.25e-09!97;UBERON:0003929!8.76e-09!55;UBERON:0004177!4.42e-08!29;UBERON:0002370!4.92e-08!23;UBERON:0000974!4.92e-08!23;UBERON:0004807!4.92e-08!23;UBERON:0005058!4.92e-08!23;UBERON:0003351!4.92e-08!23;UBERON:0009113!4.92e-08!23;UBERON:0003295!4.92e-08!23;UBERON:0009722!4.92e-08!23;UBERON:0005562!4.92e-08!23;UBERON:0007690!4.92e-08!23;UBERON:0002368!5.92e-08!60;UBERON:0003408!6.84e-08!24;UBERON:0005911!9.24e-08!69;UBERON:0000926!1.05e-07!193;UBERON:0004120!1.05e-07!193;UBERON:0006603!1.05e-07!193;UBERON:0002405!2.11e-07!70;UBERON:0006562!4.75e-07!24;UBERON:0001557!4.75e-07!24;UBERON:0001042!4.75e-07!24;UBERON:0008814!4.75e-07!24;UBERON:0009145!4.75e-07!24;UBERON:0000466!5.09e-07!79;UBERON:0002530!5.20e-07!65;UBERON:0004921!6.90e-07!126;UBERON:0004185!6.90e-07!126;UBERON:0004119!8.31e-07!130;UBERON:0000925!8.31e-07!130;UBERON:0006595!8.31e-07!130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000949,8.71e-10,72;UBERON:0003929,4.60e-09,55;UBERON:0002370,1.58e-08,23;UBERON:0000974,1.58e-08,23;UBERON:0004807,1.58e-08,23;UBERON:0005058,1.58e-08,23;UBERON:0003351,1.58e-08,23;UBERON:0009113,1.58e-08,23;UBERON:0003295,1.58e-08,23;UBERON:0009722,1.58e-08,23;UBERON:0005562,1.58e-08,23;UBERON:0007690,1.58e-08,23;UBERON:0004177,2.00e-08,29;UBERON:0005057,2.00e-08,29;UBERON:0003408,2.26e-08,24;UBERON:0002368,3.50e-08,60;UBERON:0001041,7.33e-08,80;UBERON:0006562,1.11e-07,24;UBERON:0001557,1.11e-07,24;UBERON:0001042,1.11e-07,24;UBERON:0008814,1.11e-07,24;UBERON:0009145,1.11e-07,24;UBERON:0005911,1.50e-07,69;UBERON:0000153,1.88e-07,43;UBERON:0001048,1.94e-07,134;UBERON:0002530,2.61e-07,65;UBERON:0000077,2.62e-07,35;UBERON:0000072,8.22e-07,27 | |||
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|phase1_expression=0.640595388419176,0.348975407639361,0,0.60492842261366,0.500895729946347,2.35030980676646,2.10251376535973,1.03298658753261,13.938083493015,21.2998718953014,11.1291679346578,10.6894693053751,3.59521532855532,1.66098764596095,3.33109761815663,1.82227740650843,3.49780939064073,1.89277299214943,1.7824876368746,1.27316895539409,0.680346321208558,12.4113689001107,11.4927907221132,0.799962113967033,0.91763712426868,1.14846392823004,0.86152399231815,0.861884930743556,1.14014051673824,0.756090389279792,0.886922042621219,2.54012269383853,3.69038872550742,0,3.46621943701529,2.82598897109437,2.6542016314108,0.418531630736908,0,0,0,0,0,0.629484089877886,0.811015449756117,0.367093504323363,0,0.872100625521786,0.219686182734472,0.58328969722285,1.39986421625363,0,0.503347818173209,2.90144856804538,2.35265659399725,0.257259436035947,1.71920063963254,0,0.809265843438391,0,0,0,0,0,0,0,1.19840044207362,0.384218305321555,1.34796496001021,0.675029691658453,1.26194976810829,0.856952953211411,0.883474163806454,0.979926393719632,1.72521847832825,0,0,0.127687338085188,0,0.923204014111357,1.37231465403614,1.04182674111352,0,0,0.45839474333043,1.47314292736834,0.427115042397309,0.745597783301202,0.605809546665472,0.377857800533928,2.31891590961342,2.58127163094416,0.679971333707751,2.69851595818909,1.29955283489534,0.896053774194671,1.12355536105401,0.681721290312231,0.259786004602869,0.70667914902068,0.422530259330042,2.56652954828636,7.64415719119937,0,0.649473123033642,1.52015919285059,2.52762222507392,0.68510327831436,1.29468941823586,0.593768556259299,2.60227990149204,2.13125834818499,1.84492397804847,0.60289056221049,1.64624189989987,1.0053327306374,1.48316980640624,0.144599356919912,1.76922110389975,1.61766849947409,1.54589062922275,0.969750506270444,0,0.292780797011547,0,0.766371165625774,6.4700167233197,5.99902730993408,6.86179226194549,0,0.457500602818626,0.879580464790051,0.173824320192276,0,0,0,1.62942982160506,2.61254638281195,0.505445516867349,0.210441855886474,3.77349284591841,4.59804208866946,2.70093194708024,2.10986744970001,1.97305847538851,2.17793324484245,2.71735001223214,0.258703370739016,4.095791865724,4.16033376369202,2.63926686245923,1.97276159184817,2.78047249225598,2.089512999133,2.05782136407943,4.37875387000685,9.83098462238529,5.40430604940902,2.55747149456033,2.27838349789052,2.57978665979206,0.900310307305074,2.60419209143731,1.96764231747404,1.54267112887378,0.697601834251224,1.3413670069981,1.05088808130453,0.658239399653922,0.492502392237286,0.486412857275134,0.438599962275997,0.878200461164203,0.805238512562231,0,0.823236899034275,0.330418782983798,1.58670339998127,3.83918850963421,4.41249676534833,2.19074684247559,2.01683524623343,2.00140239460383,1.14135375667535,0.949058123089023,1.15289268306808,2.5133520880027,2.58643413653496,1.36474860983384,2.69645822596266,0.648414149624083,0.796565093017469,5.12103332573321,4.34144347916969,4.50830942692322,4.2766778847516,4.46090720485539,2.17421041659988,1.64414996523069,1.32849133181642,2.35498091762062,0.740382983530803,1.1858105083486,3.83743743147016,5.70021085828289,3.82265591054251,3.44862206360455,2.65294875727659,3.05551022137704,3.16465751195892,3.56697498905078,4.66754402419738,4.31304619582064,1.48856379067401,5.30464044294753,4.2938409251009,3.94674309748207,1.4473305640901,0.923765950833023,2.4633883530163,4.07412441105065,3.73439188705414,2.58159273117352,2.51259386162724,1.90434912708811,1.56106918286239,1.26108115284953,0.8858587585951,1.2756381492599,1.3109065177259,0.518054945597687,0.723245292907558,0,0,0,3.31124095565679,0.160550589987792,0.117211686592203,1.3114795630134,0.757412781613119,2.52406575533005,1.56175497718655,1.72338718186239,0.955875191810208,1.11399337041197,0.566153061577665,1.61924280669958,0.876767573733936,0.395287777946524,0,1.84522110770749,3.91744328067962,2.76907830901079,1.97964147567043,1.32745138339963,4.37005145078967,6.34879469625977,1.69744571780308,3.54362271456927,3.07435147943927,1.55056975900933,2.90826983582004,3.20847640546249,1.58018378967908,2.10837217149998,2.06271086496374,0.340439605753788,3.78128297465751,2.45781499187234,2.35770738534752,1.24138163549592,1.24858172321449,1.31639216481697,0,5.86679270159276,1.48282449604674,1.10264199027481,1.6488625294148,0.645857706783622,1.86970067277283,1.79058516004705,1.64140899745061,1.7488850197791,0.556275906031529,1.36696704638282,5.98521917093345,4.8150577116125,3.20226376907975,1.6403307326523,0.686334519619568,7.13909405974192,7.55737842547753,5.52799895217695,0,3.95419991976419,3.86306987541013,2.70013352054503,1.46361807210128,1.9652630737156,0.809186078308924,2.0663363931334,2.09404753587224,0.259229946583586,1.86401793926078,1.69107881605257,5.68162874967119,3.47462829959905,4.27792614356905,1.80823752868824,3.04121025883401,2.8165737274981,8.72369378454466,15.4143236305795,4.59009829569411,3.74439008135225,3.16011120628178,7.50083296573608,10.5792285879772,8.18501184760109,6.98204113103178,4.56967115996909,3.846254384639,4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| ||
|short_description=p2@Dnmt3b | |||
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Latest revision as of 22:48, 25 September 2015
Short description: | p2@Dnmt3b |
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Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Dnmt3b_5end |
Coexpression cluster: | MCL_coexpression_mm9:97 |
Association with transcript: | 20bp_to_ENSMUST00000056495, ENSMUST00000088976, ENSMUST00000103150, ENSMUST00000109772, NM_001003960, NM_001003961, NM_001003963, NM_001122997, NM_010068, uc008nib.2, uc008nic.2, uc008nid.2, uc008nie.2, uc008nif.2, uc008nig.2, uc008nih.2, uc008nii.2, uc008nij.2_5end |
EntrezGene: | Dnmt3b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endocrine system | 8.71e-10 | 72 |
gut epithelium | 4.60e-09 | 55 |
thymus | 1.58e-08 | 23 |
neck | 1.58e-08 | 23 |
respiratory system epithelium | 1.58e-08 | 23 |
hemolymphoid system gland | 1.58e-08 | 23 |
pharyngeal epithelium | 1.58e-08 | 23 |
thymic region | 1.58e-08 | 23 |
pharyngeal gland | 1.58e-08 | 23 |
entire pharyngeal arch endoderm | 1.58e-08 | 23 |
thymus primordium | 1.58e-08 | 23 |
early pharyngeal endoderm | 1.58e-08 | 23 |
hemopoietic organ | 2.00e-08 | 29 |
immune organ | 2.00e-08 | 29 |
gland of gut | 2.26e-08 | 24 |
endocrine gland | 3.50e-08 | 60 |
foregut | 7.33e-08 | 80 |
pharynx | 1.11e-07 | 24 |
upper respiratory tract | 1.11e-07 | 24 |
chordate pharynx | 1.11e-07 | 24 |
pharyngeal arch system | 1.11e-07 | 24 |
pharyngeal region of foregut | 1.11e-07 | 24 |
endo-epithelium | 1.50e-07 | 69 |
anterior region of body | 1.88e-07 | 43 |
primordium | 1.94e-07 | 134 |
gland | 2.61e-07 | 65 |
mixed endoderm/mesoderm-derived structure | 2.62e-07 | 35 |
segment of respiratory tract | 8.22e-07 | 27 |