FFCP PHASE1:Hg19::chr5:140864649..140864664,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56098 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8717 | |||
|TSSclassifier=strong | |||
|UniProt=Q9Y5F7,A4FU17 | |||
|association_with_transcript=-76bp_to_ENST00000306593,NM_018928,NM_032406,uc003lky.1,uc011dbb.1_5end | |||
|cluster_id=chr5:140864649..140864664,+ | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_2_at_PCDHGC4_5end | |||
|id=chr5:140864649..140864664,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000047;2.26e-13;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.97e-12,8 | |||
|ontology_enrichment_development_v019=UBERON:0006215;3.67e-18;3!UBERON:0006601;1.72e-10;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.57e-74!57;UBERON:0005068!3.57e-74!57;UBERON:0006241!3.57e-74!57;UBERON:0007135!3.57e-74!57;UBERON:0001017!1.23e-68!82;UBERON:0005743!1.67e-67!86;UBERON:0002616!2.56e-61!59;UBERON:0000073!9.78e-60!94;UBERON:0001016!9.78e-60!94;UBERON:0000955!3.07e-58!69;UBERON:0006238!3.07e-58!69;UBERON:0001893!1.06e-57!34;UBERON:0002020!1.52e-57!34;UBERON:0003528!1.52e-57!34;UBERON:0002780!2.54e-56!41;UBERON:0001890!2.54e-56!41;UBERON:0006240!2.54e-56!41;UBERON:0002791!1.66e-55!33;UBERON:0003080!9.28e-55!42;UBERON:0001869!5.74e-54!32;UBERON:0003075!1.67e-49!86;UBERON:0007284!1.67e-49!86;UBERON:0002346!8.87e-49!90;UBERON:0000956!1.30e-43!25;UBERON:0000203!1.30e-43!25;UBERON:0002619!6.45e-42!22;UBERON:0001950!1.11e-37!20;UBERON:0003056!5.04e-37!61;UBERON:0000033!3.29e-30!123;UBERON:0007023!4.19e-30!115;UBERON:0000924!2.01e-29!173;UBERON:0006601!2.01e-29!173;UBERON:0004121!3.12e-29!169;UBERON:0000153!3.46e-28!129;UBERON:0007811!3.46e-28!129;UBERON:0003076!1.41e-19!15;UBERON:0003057!1.41e-19!15;UBERON:0002420!2.19e-15!9;UBERON:0007245!2.19e-15!9;UBERON:0010009!2.19e-15!9;UBERON:0010011!2.19e-15!9;UBERON:0000454!2.19e-15!9;UBERON:0000025!3.39e-15!194;UBERON:0002308!4.56e-15!9;UBERON:0000125!4.56e-15!9;UBERON:0000200!3.17e-14!6;UBERON:0001871!4.17e-14!7;UBERON:0004733!5.34e-14!12;UBERON:0002028!5.34e-14!12;UBERON:0007277!5.34e-14!12;UBERON:0004732!9.01e-13!13;UBERON:0001872!1.68e-12!5;UBERON:0000349!2.48e-12!5;UBERON:0002680!9.29e-12!9;UBERON:0001895!9.29e-12!9;UBERON:0010092!9.29e-12!9;UBERON:0009663!2.99e-11!7;UBERON:0000064!1.96e-10!219;UBERON:0004111!2.10e-10!241;UBERON:0000369!6.18e-10!4;UBERON:0002435!6.18e-10!4;UBERON:0000204!6.18e-10!4;UBERON:0010082!6.18e-10!4;UBERON:0002298!9.98e-10!8;UBERON:0002021!5.90e-08!5;UBERON:0000475!6.03e-08!365;UBERON:0000477!6.21e-08!286;UBERON:0005383!9.68e-08!3;UBERON:0005382!9.68e-08!3;UBERON:0000988!1.06e-07!3;UBERON:0002240!1.36e-07!3;UBERON:0000483!1.74e-07!309;UBERON:0002771!1.86e-07!3;UBERON:0000062!2.29e-07!511;UBERON:0000119!2.70e-07!312;UBERON:0006331!3.08e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;6.16e-58;32!UBERON:0002619;2.45e-57;22!UBERON:0001950;9.68e-55;20!UBERON:0003528;6.38e-54;34!UBERON:0002020;6.38e-54;34!UBERON:0001893;9.75e-53;34!UBERON:0002791;1.42e-52;32!UBERON:0000956;2.27e-50;25!UBERON:0000203;2.27e-50;25!UBERON:0002780;3.30e-35;41!UBERON:0001890;3.30e-35;41!UBERON:0000073;3.48e-35;53!UBERON:0002616;3.48e-35;53!UBERON:0001016;1.43e-27;83!UBERON:0001017;5.58e-27;75!UBERON:0000955;9.33e-25;68!UBERON:0001872;5.23e-20;5!UBERON:0000349;9.18e-20;5!UBERON:0004733;4.66e-17;12!UBERON:0002028;4.66e-17;12!UBERON:0002420;1.14e-16;9!UBERON:0007245;1.14e-16;9!UBERON:0010009;1.14e-16;9!UBERON:0010011;1.14e-16;9!UBERON:0000454;1.14e-16;9!UBERON:0002680;4.11e-16;9!UBERON:0001895;4.11e-16;9!UBERON:0004732;1.04e-15;13!UBERON:0001871;2.13e-14;6!UBERON:0000369;2.50e-14;4!UBERON:0002435;2.50e-14;4!UBERON:0000204;2.50e-14;4!UBERON:0001876;5.69e-13;2!UBERON:0002021;9.84e-12;5!UBERON:0000125;6.15e-11;9!UBERON:0002308;6.15e-11;9!UBERON:0000200;4.40e-10;6!UBERON:0001870;2.33e-09;3!UBERON:0002037;2.36e-09;6!UBERON:0002298;2.36e-09;6!UBERON:0005383;4.49e-09;3!UBERON:0005382;4.49e-09;3!UBERON:0000988;9.28e-09;3!UBERON:0007023;1.01e-08;114!UBERON:0009663;2.13e-08;7!UBERON:0002581;8.81e-08;1!UBERON:0002902;1.14e-07;1!UBERON:0009899;1.14e-07;1!UBERON:0011216;1.50e-07;132!UBERON:0001882;1.83e-07;1!UBERON:0002022;1.83e-07;1!UBERON:0007190;1.83e-07;1!UBERON:0005403;1.83e-07;1!UBERON:0001874;3.51e-07;1!UBERON:0010314;3.98e-07;132 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.13e-69,81;UBERON:0001049,4.01e-67,56;UBERON:0005068,4.01e-67,56;UBERON:0006241,4.01e-67,56;UBERON:0007135,4.01e-67,56;UBERON:0000073,2.42e-65,53;UBERON:0002616,2.42e-65,53;UBERON:0001869,2.77e-63,32;UBERON:0001016,2.44e-62,89;UBERON:0001893,1.91e-59,34;UBERON:0003528,2.95e-59,34;UBERON:0002020,2.95e-59,34;UBERON:0002619,2.51e-57,22;UBERON:0002791,1.13e-56,32;UBERON:0001950,9.33e-55,20;UBERON:0000955,8.85e-54,68;UBERON:0006238,8.85e-54,68;UBERON:0000956,2.32e-50,25;UBERON:0000203,2.32e-50,25;UBERON:0002780,6.94e-49,41;UBERON:0001890,6.94e-49,41;UBERON:0003080,6.94e-49,41;UBERON:0006240,6.94e-49,41;UBERON:0003075,1.53e-44,82;UBERON:0007284,1.53e-44,82;UBERON:0002346,2.90e-42,86;UBERON:0010371,3.71e-34,104;UBERON:0003056,7.66e-32,61;UBERON:0004121,2.08e-30,171;UBERON:0000924,2.08e-30,171;UBERON:0006601,2.08e-30,171;UBERON:0010314,6.73e-26,132;UBERON:0011216,8.52e-24,223;UBERON:0007023,2.25e-23,114;UBERON:0001872,4.64e-20,5;UBERON:0000349,1.01e-19,5;UBERON:0003076,1.46e-18,15;UBERON:0003057,1.46e-18,15;UBERON:0004733,4.40e-17,12;UBERON:0002028,4.40e-17,12;UBERON:0007277,4.40e-17,12;UBERON:0002420,1.20e-16,9;UBERON:0007245,1.20e-16,9;UBERON:0010009,1.20e-16,9;UBERON:0010011,1.20e-16,9;UBERON:0000454,1.20e-16,9;UBERON:0000025,2.97e-16,192;UBERON:0002680,3.79e-16,9;UBERON:0001895,3.79e-16,9;UBERON:0010092,3.79e-16,9;UBERON:0004732,9.85e-16,13;UBERON:0001871,2.20e-14,6;UBERON:0000369,2.62e-14,4;UBERON:0002435,2.62e-14,4;UBERON:0000204,2.62e-14,4;UBERON:0010082,2.62e-14,4;UBERON:0001876,5.88e-13,2;UBERON:0004111,5.50e-12,240;UBERON:0002021,1.16e-11,5;UBERON:0000125,7.29e-11,9;UBERON:0002308,7.29e-11,9;UBERON:0000200,4.90e-10,6;UBERON:0001870,2.06e-09,3;UBERON:0002037,2.19e-09,6;UBERON:0006215,2.19e-09,6;UBERON:0002298,2.39e-09,6;UBERON:0005383,4.68e-09,3;UBERON:0005382,4.68e-09,3;UBERON:0000988,9.28e-09,3;UBERON:0009663,2.19e-08,7;UBERON:0000483,2.70e-08,306;UBERON:0000119,3.65e-08,309;UBERON:0002581,9.10e-08,1;UBERON:0002902,1.33e-07,1;UBERON:0009899,1.33e-07,1;UBERON:0002022,1.72e-07,1;UBERON:0001882,1.83e-07,1;UBERON:0005403,1.83e-07,1;UBERON:0007190,2.21e-07,1;UBERON:0001874,3.84e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0.85870796139317,0.273748850145768,0,0,0,0,0,0,0.464448369948228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0.795285947051099,0,0,0,0,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0.355009592516614,0,0,0,0,0,0.121973706129595,0,0.116193942869518,0,0.252320850875628,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27047312111232,7.8083912314573,1.54657762555539,1.67516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211103257785751,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,2.98244294329889,1.1253553312841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.74214478529481,7.98455192004777,0,0,0,0,0,0,0.344743373241465,0,0,3.54296554325536,0.361789315876224,1.52581736317083,1.3269511191747,1.77328571372128,2.19385397153973,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0.741412462787447,0,0.702793337176017,0,0,0,0,0,7.95789180239274,0,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,2.91229661397042,0,0,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.18091875923721,0.817220436669454,0,0,0,0,0,2.73373004961111,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0342636508924,0.66116300871345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.31640907980192,0.854183854313742,0.500763722825999,0,0.443716206147409,1.42821726765182,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829550616910385,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0,2.63339822895484,0,0.319267718114302,2.05116364240755,2.7727886584389,3.04291910842559,0.968853873791107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16120270778863,1.56215619722769,0.826747186004736,2.21955335678674,3.82882366312754,0,0,0,0,0,0,0,0.455324382702595,0,0,0,1.97112225632812,4.01213918733379,0,0,0.078493092850514,1.41404030924402,0,0.913158720509496,0,0,0.714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0.785233868459781,0.297046400327086,4.226557275834,0,0,0.0644578879735772,0,0,0,0,0.730336388246517,0,0.286679166302903,0,3.26359152916391,3.9271562130634,0,0,0,0,0.126166424835079,0,0,0.407955318967927,0.26721740526556,0.459474497674225,0,0,0.267964130156178,0,0.413731983447581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@PCDHGC4 | |||
}} |
Latest revision as of 04:35, 25 September 2015
Short description: | p2@PCDHGC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PCDHGC4_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | -76bp_to_ENST00000306593, NM_018928, NM_032406, uc003lky.1, uc011dbb.1_5end |
EntrezGene: | PCDHGC4 |
HGNC: | 8717 |
UniProt: | Q9Y5F7A4FU17 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.97e-12 | 8 |