FFCP PHASE1:Hg19::chr16:1728272..1728296,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=90861 | |EntrezGene=90861 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14137 | |HGNC=14137 | ||
|TSSclassifier=strong | |||
|UniProt=B4DLH4,Q9H910 | |UniProt=B4DLH4,Q9H910 | ||
|association_with_transcript=0bp_to_ENST00000382711,NM_144570,uc002cmg.2,uc010brt.2,uc010bru.2,uc010uvi.1,uc010uvj.1_5end | |association_with_transcript=0bp_to_ENST00000382711,NM_144570,uc002cmg.2,uc010brt.2,uc010bru.2,uc010uvi.1,uc010uvj.1_5end | ||
|cluster_id=chr16:1728272..1728296,+ | |||
|description=CAGE_peak_1_at_HN1L_5end | |description=CAGE_peak_1_at_HN1L_5end | ||
|id=chr16:1728272..1728296,+ | |id=chr16:1728272..1728296,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.54e-58!254;CL:0002321!6.54e-27!248;CL:0000220!5.38e-26!246;CL:0000076!7.19e-14!62;CL:0000223!2.83e-11!59;CL:0000221!2.38e-10!71;CL:0002076!2.54e-10!43;CL:0000548!4.95e-10!679;CL:0000004!4.95e-10!679;CL:0000255!4.95e-10!679;CL:1000497!1.66e-09!18;CL:0002518!1.66e-09!18;CL:0000012!2.37e-09!682;CL:1000449!1.14e-08!16;CL:0000213!7.98e-08!57;CL:0000215!7.98e-08!57;CL:0000133!9.53e-08!59;CL:1000507!2.75e-07!12;CL:1000494!2.75e-07!12;CL:0002368!4.76e-07!13;CL:0002077!4.93e-07!33;CL:0002681!6.48e-07!13;CL:0002584!6.48e-07!13;CL:0000077!7.87e-07!19 | |ontology_enrichment_celltype=CL:0000066!1.54e-58!254;CL:0002321!6.54e-27!248;CL:0000220!5.38e-26!246;CL:0000076!7.19e-14!62;CL:0000223!2.83e-11!59;CL:0000221!2.38e-10!71;CL:0002076!2.54e-10!43;CL:0000548!4.95e-10!679;CL:0000004!4.95e-10!679;CL:0000255!4.95e-10!679;CL:1000497!1.66e-09!18;CL:0002518!1.66e-09!18;CL:0000012!2.37e-09!682;CL:1000449!1.14e-08!16;CL:0000213!7.98e-08!57;CL:0000215!7.98e-08!57;CL:0000133!9.53e-08!59;CL:1000507!2.75e-07!12;CL:1000494!2.75e-07!12;CL:0002368!4.76e-07!13;CL:0002077!4.93e-07!33;CL:0002681!6.48e-07!13;CL:0002584!6.48e-07!13;CL:0000077!7.87e-07!19 | ||
|ontology_enrichment_celltype_v019=CL:1000497;2.41e-10;17!CL:0002518;2.41e-10;17!CL:1000449;1.59e-09;15!CL:0002076;3.16e-08;42!CL:1000507;7.36e-08;10!CL:1000494;7.36e-08;10!CL:0002681;9.63e-08;12!CL:0002584;9.63e-08;12!CL:0002368;4.58e-07;13!CL:0000076;5.04e-07;63!CL:0000077;8.02e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.64e-59,253;CL:0002321,4.90e-27,250;CL:0000076,2.30e-13,63;CL:0000223,9.70e-12,58;CL:0002076,7.29e-11,42;CL:1000497,2.40e-10,17;CL:0002518,2.40e-10,17;CL:0000221,5.51e-10,72;CL:1000449,1.60e-09,15;CL:0000213,3.86e-08,58;CL:0000215,3.86e-08,58;CL:1000507,7.38e-08,10;CL:1000494,7.38e-08,10;CL:0000133,9.53e-08,59;CL:0002681,9.76e-08,12;CL:0002584,9.76e-08,12;CL:0002368,4.76e-07,13;CL:0000077,7.87e-07,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!5.64e-30!235;DOID:14566!7.23e-29!239;DOID:0050687!3.60e-25!143;DOID:305!5.33e-22!106;DOID:0050686!1.27e-10!137 | |||
|ontology_enrichment_disease_v019=DOID:305;4.39e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:162,5.64e-30,235;DOID:14566,7.23e-29,239;DOID:0050687,3.60e-25,143;DOID:305,5.33e-22,106;DOID:0050686,1.27e-10,137 | |||
|ontology_enrichment_uberon=UBERON:0005177!3.33e-12!107;UBERON:0004119!3.14e-09!169;UBERON:0000925!3.14e-09!169;UBERON:0006595!3.14e-09!169;UBERON:0000119!3.42e-09!312;UBERON:0004211!1.14e-08!16;UBERON:0001285!1.14e-08!16;UBERON:0007684!1.14e-08!16;UBERON:0003220!1.14e-08!16;UBERON:0004208!1.14e-08!16;UBERON:0000483!1.52e-08!309;UBERON:0003104!2.24e-08!238;UBERON:0009142!2.24e-08!238;UBERON:0001048!2.42e-08!168;UBERON:0000064!2.60e-08!219;UBERON:0001851!3.20e-08!16;UBERON:0000466!3.39e-08!126;UBERON:0005172!3.88e-08!55;UBERON:0005173!3.88e-08!55;UBERON:0006554!4.22e-08!44;UBERON:0000489!4.85e-08!32;UBERON:0002100!5.69e-08!216;UBERON:0001008!7.06e-08!45;UBERON:0006555!9.08e-08!17;UBERON:0005103!9.08e-08!17;UBERON:0000083!9.08e-08!17;UBERON:0009201!9.08e-08!17;UBERON:0004819!9.08e-08!17;UBERON:0006553!9.08e-08!17;UBERON:0003074!9.08e-08!17;UBERON:0003060!9.08e-08!17;UBERON:0002113!1.07e-07!27;UBERON:0003918!1.07e-07!27;UBERON:0005095!1.07e-07!27;UBERON:0007687!1.07e-07!27;UBERON:0009569!1.36e-07!113;UBERON:0000058!1.56e-07!26;UBERON:0009773!2.75e-07!12;UBERON:0001231!2.75e-07!12;UBERON:0004810!2.75e-07!12;UBERON:0000080!4.73e-07!18;UBERON:0002120!4.73e-07!18;UBERON:0004875!4.73e-07!18;UBERON:0005721!4.73e-07!18;UBERON:0005754!4.73e-07!18;UBERON:0007297!4.73e-07!18;UBERON:0001225!6.48e-07!13;UBERON:0008987!6.48e-07!13;UBERON:0005911!6.57e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;6.30e-11;30!UBERON:0001008;6.30e-11;30!UBERON:0000489;1.02e-09;29!UBERON:0002113;1.44e-09;24!UBERON:0011143;1.44e-09;24!UBERON:0006555;1.59e-09;15!UBERON:0004819;1.59e-09;15!UBERON:0001285;1.59e-09;15!UBERON:0007684;1.59e-09;15!UBERON:0001851;4.94e-09;15!UBERON:0004211;7.36e-08;10!UBERON:0009773;7.36e-08;10!UBERON:0001231;7.36e-08;10!UBERON:0004810;7.36e-08;10!UBERON:0005911;8.25e-08;36!UBERON:0001225;9.63e-08;12!UBERON:0008987;9.63e-08;12!UBERON:0000353;1.76e-07;15!UBERON:0004807;4.42e-07;22 | |||
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2916076 | ||
|short_description=p1@HN1L | |short_description=p1@HN1L | ||
}} | }} |
Latest revision as of 22:14, 24 September 2015
Short description: | p1@HN1L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HN1L_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000382711, NM_144570, uc002cmg.2, uc010brt.2, uc010bru.2, uc010uvi.1, uc010uvj.1_5end |
EntrezGene: | HN1L |
HGNC: | 14137 |
UniProt: | B4DLH4Q9H910 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.64e-59 | 253 |
embryonic cell | 4.90e-27 | 250 |
squamous epithelial cell | 2.30e-13 | 63 |
endodermal cell | 9.70e-12 | 58 |
endo-epithelial cell | 7.29e-11 | 42 |
kidney cell | 2.40e-10 | 17 |
kidney epithelial cell | 2.40e-10 | 17 |
ectodermal cell | 5.51e-10 | 72 |
epithelial cell of nephron | 1.60e-09 | 15 |
lining cell | 3.86e-08 | 58 |
barrier cell | 3.86e-08 | 58 |
kidney tubule cell | 7.38e-08 | 10 |
nephron tubule epithelial cell | 7.38e-08 | 10 |
neurectodermal cell | 9.53e-08 | 59 |
kidney cortical cell | 9.76e-08 | 12 |
renal cortical epithelial cell | 9.76e-08 | 12 |
respiratory epithelial cell | 4.76e-07 | 13 |
mesothelial cell | 7.87e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 1.58e-12 | 101 |
nephron epithelium | 1.60e-09 | 15 |
renal tubule | 1.60e-09 | 15 |
nephron tubule | 1.60e-09 | 15 |
nephron | 1.60e-09 | 15 |
uriniferous tubule | 1.60e-09 | 15 |
nephrogenic mesenchyme | 1.60e-09 | 15 |
cell layer | 3.52e-09 | 309 |
urinary system structure | 3.56e-09 | 47 |
cortex | 4.95e-09 | 15 |
renal system | 6.16e-09 | 48 |
epithelium | 1.56e-08 | 306 |
excretory tube | 1.68e-08 | 16 |
kidney epithelium | 1.68e-08 | 16 |
cavitated compound organ | 1.69e-08 | 31 |
endoderm-derived structure | 1.72e-08 | 160 |
endoderm | 1.72e-08 | 160 |
presumptive endoderm | 1.72e-08 | 160 |
abdomen element | 1.90e-08 | 54 |
abdominal segment element | 1.90e-08 | 54 |
kidney | 3.38e-08 | 26 |
kidney mesenchyme | 3.38e-08 | 26 |
upper urinary tract | 3.38e-08 | 26 |
kidney rudiment | 3.38e-08 | 26 |
kidney field | 3.38e-08 | 26 |
nephron tubule epithelium | 7.38e-08 | 10 |
subdivision of trunk | 8.03e-08 | 112 |
trunk | 9.19e-08 | 199 |
cortex of kidney | 9.76e-08 | 12 |
renal parenchyma | 9.76e-08 | 12 |
primordium | 1.01e-07 | 160 |
parenchyma | 1.77e-07 | 15 |
endo-epithelium | 6.57e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
cancer | 5.64e-30 | 235 |
disease of cellular proliferation | 7.23e-29 | 239 |
cell type cancer | 3.60e-25 | 143 |
carcinoma | 5.33e-22 | 106 |
organ system cancer | 1.27e-10 | 137 |