FFCP PHASE1:Hg19::chr22:39640974..39640994,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5155 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8800 | |||
|TSSclassifier=strong | |||
|UniProt=P01127 | |||
|association_with_transcript=-17bp_to_NM_002608,uc003axf.2_5end | |||
|cluster_id=chr22:39640974..39640994,- | |||
|coexpression_cluster_id=C140 | |||
|description=CAGE_peak_1_at_PDGFB_5end | |||
|id=chr22:39640974..39640994,- | |||
|ontology_enrichment_celltype=CL:0000115!1.03e-19!35;CL:0002078!7.44e-19!44;CL:0000213!6.51e-18!57;CL:0000215!6.51e-18!57;CL:0002139!4.34e-17!24;CL:0000066!3.18e-14!254;CL:0000071!4.91e-13!18;CL:0002546!4.91e-13!18;CL:1000497!5.66e-10!18;CL:0002518!5.66e-10!18;CL:1000449!5.01e-09!16;CL:0000076!7.79e-09!62;CL:1000413!2.16e-07!9;CL:0002681!3.38e-07!13;CL:0002584!3.38e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0000115;4.44e-19;36!CL:0002139;1.99e-18;24!CL:0000071;5.04e-14;18!CL:0002078;1.50e-13;45!CL:1000497;3.89e-12;17!CL:0002518;3.89e-12;17!CL:0000213;2.96e-11;58!CL:0000215;2.96e-11;58!CL:1000449;4.01e-11;15!CL:0002681;4.16e-09;12!CL:0002584;4.16e-09;12!CL:1000413;6.78e-08;9!CL:1000507;1.34e-07;10!CL:1000494;1.34e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.98e-22,36;CL:0002078,3.93e-21,45;CL:0000213,1.01e-19,58;CL:0000215,1.01e-19,58;CL:0002139,2.10e-18,24;CL:0000071,5.25e-14,18;CL:0002546,5.25e-14,18;CL:0000066,3.46e-12,253;CL:1000497,3.95e-12,17;CL:0002518,3.95e-12,17;CL:1000449,4.08e-11,15;CL:0002681,4.25e-09,12;CL:0002584,4.25e-09,12;CL:1000413,6.89e-08,9;CL:1000507,1.36e-07,10;CL:1000494,1.36e-07,10;CL:0000076,2.75e-07,63 | |||
|ontology_enrichment_development_v019=CL:0002546;5.04e-14;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000467!4.47e-22!625;UBERON:0000480!9.64e-22!626;UBERON:0007023!3.60e-20!115;UBERON:0000468!1.17e-19!659;UBERON:0004111!7.21e-19!241;UBERON:0000025!9.60e-17!194;UBERON:0000062!2.57e-16!511;UBERON:0000922!6.40e-16!612;UBERON:0000477!1.70e-15!286;UBERON:0002050!2.74e-15!605;UBERON:0005423!2.74e-15!605;UBERON:0000923!5.53e-15!604;UBERON:0005291!5.53e-15!604;UBERON:0006598!5.53e-15!604;UBERON:0002532!5.53e-15!604;UBERON:0000119!9.67e-14!312;UBERON:0000483!1.65e-13!309;UBERON:0001986!4.91e-13!18;UBERON:0004638!4.91e-13!18;UBERON:0004852!4.91e-13!18;UBERON:0000487!2.34e-11!22;UBERON:0001049!1.25e-10!57;UBERON:0005068!1.25e-10!57;UBERON:0006241!1.25e-10!57;UBERON:0007135!1.25e-10!57;UBERON:0000489!2.27e-10!32;UBERON:0000064!3.81e-10!219;UBERON:0003075!4.98e-10!86;UBERON:0007284!4.98e-10!86;UBERON:0003103!1.52e-09!69;UBERON:0000080!1.96e-09!18;UBERON:0002120!1.96e-09!18;UBERON:0004875!1.96e-09!18;UBERON:0005721!1.96e-09!18;UBERON:0005754!1.96e-09!18;UBERON:0007297!1.96e-09!18;UBERON:0001008!2.41e-09!45;UBERON:0006554!2.65e-09!44;UBERON:0002113!2.88e-09!27;UBERON:0003918!2.88e-09!27;UBERON:0005095!2.88e-09!27;UBERON:0007687!2.88e-09!27;UBERON:0006555!3.23e-09!17;UBERON:0005103!3.23e-09!17;UBERON:0000083!3.23e-09!17;UBERON:0009201!3.23e-09!17;UBERON:0004819!3.23e-09!17;UBERON:0006553!3.23e-09!17;UBERON:0003074!3.23e-09!17;UBERON:0003060!3.23e-09!17;UBERON:0004211!5.01e-09!16;UBERON:0001285!5.01e-09!16;UBERON:0007684!5.01e-09!16;UBERON:0003220!5.01e-09!16;UBERON:0004208!5.01e-09!16;UBERON:0006914!5.73e-09!25;UBERON:0004876!8.80e-09!20;UBERON:0002616!1.08e-08!59;UBERON:0003914!1.66e-08!118;UBERON:0002346!1.80e-08!90;UBERON:0003081!1.80e-08!216;UBERON:0003887!1.91e-08!21;UBERON:0005172!2.22e-08!55;UBERON:0005173!2.22e-08!55;UBERON:0003080!2.60e-08!42;UBERON:0000955!2.78e-08!69;UBERON:0006238!2.78e-08!69;UBERON:0000058!4.43e-08!26;UBERON:0002780!6.81e-08!41;UBERON:0001890!6.81e-08!41;UBERON:0006240!6.81e-08!41;UBERON:0005743!7.78e-08!86;UBERON:0003064!1.89e-07!37;UBERON:0001017!1.92e-07!82;UBERON:0003915!2.16e-07!9;UBERON:0004700!2.16e-07!9;UBERON:0001917!2.16e-07!9;UBERON:0001851!2.18e-07!16;UBERON:0005177!2.40e-07!107;UBERON:0000353!2.57e-07!17;UBERON:0005631!3.02e-07!14;UBERON:0000158!3.02e-07!14;UBERON:0001225!3.38e-07!13;UBERON:0008987!3.38e-07!13;UBERON:0002020!4.01e-07!34;UBERON:0003528!4.01e-07!34;UBERON:0001893!4.25e-07!34;UBERON:0002791!6.00e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;5.04e-14;18!UBERON:0001986;5.04e-14;18!UBERON:0004852;5.04e-14;18!UBERON:0000487;1.97e-12;22!UBERON:0006554;2.62e-12;30!UBERON:0001008;2.62e-12;30!UBERON:0000489;1.94e-11;29!UBERON:0006555;4.01e-11;15!UBERON:0004819;4.01e-11;15!UBERON:0001285;4.01e-11;15!UBERON:0007684;4.01e-11;15!UBERON:0002113;2.87e-10;24!UBERON:0011143;2.87e-10;24!UBERON:0006914;1.49e-09;25!UBERON:0000353;3.55e-09;15!UBERON:0001225;4.16e-09;12!UBERON:0008987;4.16e-09;12!UBERON:0001851;1.10e-08;15!UBERON:0003915;6.78e-08;9!UBERON:0004700;6.78e-08;9!UBERON:0001917;6.78e-08;9!UBERON:0004211;1.34e-07;10!UBERON:0009773;1.34e-07;10!UBERON:0001231;1.34e-07;10!UBERON:0004810;1.34e-07;10!UBERON:0000490;3.41e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.20e-20,114;UBERON:0004111,1.03e-18,240;UBERON:0000922,1.17e-17,592;UBERON:0000025,5.46e-17,192;UBERON:0005423,3.95e-16,581;UBERON:0004638,5.25e-14,18;UBERON:0001986,5.25e-14,18;UBERON:0004852,5.25e-14,18;UBERON:0000487,2.17e-12,22;UBERON:0001008,5.59e-12,48;UBERON:0000489,5.88e-12,31;UBERON:0006554,6.06e-12,47;UBERON:0000119,9.09e-12,309;UBERON:0002050,1.12e-11,564;UBERON:0000483,1.54e-11,306;UBERON:0006555,2.79e-11,16;UBERON:0004819,2.79e-11,16;UBERON:0000923,3.61e-11,560;UBERON:0010316,3.61e-11,560;UBERON:0005291,3.61e-11,560;UBERON:0006598,3.61e-11,560;UBERON:0010317,3.61e-11,560;UBERON:0002532,3.61e-11,560;UBERON:0004211,4.08e-11,15;UBERON:0009773,4.08e-11,15;UBERON:0001231,4.08e-11,15;UBERON:0001285,4.08e-11,15;UBERON:0007684,4.08e-11,15;UBERON:0004208,4.08e-11,15;UBERON:0001049,4.63e-11,56;UBERON:0005068,4.63e-11,56;UBERON:0006241,4.63e-11,56;UBERON:0007135,4.63e-11,56;UBERON:0002113,8.67e-11,26;UBERON:0003918,8.67e-11,26;UBERON:0011143,8.67e-11,26;UBERON:0005095,8.67e-11,26;UBERON:0007687,8.67e-11,26;UBERON:0003103,9.49e-11,68;UBERON:0000073,3.49e-10,53;UBERON:0002616,3.49e-10,53;UBERON:0003075,7.97e-10,82;UBERON:0007284,7.97e-10,82;UBERON:0006914,1.61e-09,25;UBERON:0003914,2.69e-09,117;UBERON:0000353,3.63e-09,15;UBERON:0005172,3.94e-09,54;UBERON:0005173,3.94e-09,54;UBERON:0001225,4.25e-09,12;UBERON:0008987,4.25e-09,12;UBERON:0001851,1.15e-08,15;UBERON:0002780,1.97e-08,41;UBERON:0001890,1.97e-08,41;UBERON:0003080,1.97e-08,41;UBERON:0006240,1.97e-08,41;UBERON:0000955,2.12e-08,68;UBERON:0006238,2.12e-08,68;UBERON:0002346,2.22e-08,86;UBERON:0010371,3.61e-08,104;UBERON:0003915,6.89e-08,9;UBERON:0004700,6.89e-08,9;UBERON:0001917,6.89e-08,9;UBERON:0010314,8.79e-08,132;UBERON:0005631,9.93e-08,14;UBERON:0000158,9.93e-08,14;UBERON:0003081,1.03e-07,203;UBERON:0003528,1.35e-07,34;UBERON:0002020,1.35e-07,34;UBERON:0004810,1.36e-07,10;UBERON:0001893,1.44e-07,34;UBERON:0001017,1.73e-07,81;UBERON:0002791,4.71e-07,32;UBERON:0003056,6.35e-07,61;UBERON:0005177,6.42e-07,101;UBERON:0001869,8.00e-07,32 | |||
|phase1_expression=0,0,0.281908808191942,0,0,2.61701557230111,0,0,0.261185628199839,36.8600904752263,46.7526782541526,37.7903573785198,63.3040747748289,0,0,2.01697543935533,1.20538905604795,2.19093027116212,2.43966399395253,12.4352268657556,4.69201589861782,6.89600387251793,2.0036519099174,1.50561867580173,7.03038781730896,0,0,0,0.393364276848904,0,1.08371286321253,0.919421224478927,0.90361775633475,0,0,0,0.293600439334847,1.66198622559563,2.20598892217156,0.868043482863407,41.424362734386,36.2760905941257,37.0908817393229,1.74477886535478,7.55751887377619,5.09426528494414,13.0160260667183,21.7918980651568,6.81354015969228,14.0969272237854,26.3845527724974,6.14853797710322,5.5159308917859,14.2006630388442,10.8341189275473,3.9530891303947,10.3704337021981,4.49446968890169,17.1406979727705,17.6510964891852,18.5407766481722,9.89553900560148,17.5528018707036,11.9342930149154,13.930043454172,39.1495805036886,37.3693349397345,7.28621129244555,21.3807996552283,3.04064382587163,8.47559303686716,19.1504370713534,11.3926459478718,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,1.12101712596307,0.263384084775077,0,0,0.411202997999018,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0.34362744548263,0.506039384039006,1.27426165729639,0,0.950452044448374,0.150575119077773,0.255973222308837,0,1.18388626022008,0.821127996921047,0.201606743224732,1.60464117470104,0.144824403882799,2.43806866313962,7.37770945674,10.612592633013,0,0,0,0,0.973269740605272,10.2097602537193,10.4212816807405,18.4453049955565,17.9441333431866,2.18577172975525,0.370784442784429,20.1219384065904,21.4179576878099,20.4755259199052,6.43924685624423,2.85997455390064,3.71457501329565,75.9272396140813,99.7872130323104,212.797127485455,51.4430227150849,145.985803801047,126.829417334371,93.8387399750279,79.333945064984,128.075854567216,242.337723641621,312.998379393807,87.4312921576289,259.193905116156,149.638873700769,240.612158520883,63.2242076251285,55.0096962934116,62.6119831487272,113.454311724754,55.0574082549515,81.8911795368921,0,0,2.61656431285521,0,0.379891534993739,0,0,0.354668382198357,0,30.9572087616144,1.48000529050296,1.24484414159907,21.149575514941,16.3461903113459,1.36221684880438,1.15235184896,0.234321431833797,0,17.1141546463335,0,0,0,0.140450806702248,0.204154171254893,0,0,0,0,3.64064544775211,4.31170885089743,0,0.125118519871964,0,0,0,0,5.89847352432109,0,0,0,0,0,0.515281080091258,0.37223371266318,1.18143432568886,0.876933046450788,0.504867548488229,0.184099797284599,0,0.710019185033229,0,0.169560592310488,28.6026062681679,26.456373697311,23.5179768218983,0.853815942907168,0.132529768321485,0.813357600086629,3.00617059544574,1.00928340350251,0.72995471815166,0,0,0,0,0,1.8929088006375,1.85443159085912,1.44606617930089,2.86764329104224,2.83243277320128,2.37270619111097,0.808987848960987,0.98110732562673,0,160.917889108173,40.6701144029993,4.115740113314,10.2906097969879,0,0.982827216677626,2.95394953340702,0,1.10689594688802,5.31860211925429,3.84125998930189,0,1.00528972411631,2.68506490959736,0,0,28.8662684050547,1.39116485970092,1.76113041353732,300.282211343034,206.954524121745,225.831678702468,26.0767451326561,19.7451817281821,11.8184162921951,7.02012795417713,2.22946743433092,0,14.4464630251019,9.78248170972467,0.53735113621709,0.290633938513962,6.13412286664338,0,0,0.207328115540772,0.576479813667846,0.37872730027914,0,0,0,1.71072446022705,0,0,0,2.80327710863402,10.0270815831654,1.54010400223995,0,14.3062578340753,10.988935783228,6.38251479803689,6.24044621468197,1.02882949704857,0,0,8.00676764485626,0,0,7.49193223875591,2.48774364119782,0,0.602878754119172,0,2.59929777073348,27.9734695474738,32.1444538516561,8.43335757932127,0,0,0,0.289562613335158,0.821905290201534,4.1184021545176,0,0.197030760201927,0.215627574859517,0.385029108839245,2.7950408664471,0,0,0.167516265334349,0,0.749007023947182,0,1.24324654030811,0,0,0,0.207970861530807,0,0,0,0,0,2.0694614258501,0,0.184369168541703,0.0868836144680828,0.979005787313703,0.343143423810856,0.620304078368662,1.72571360654893,2.56146138728266,16.368888858098,41.6088598776243,30.239029332968,0,0.306923946576125,0,0.640695746278505,0,0,1.48418066444991,0,0,0,0,0,1.0877350463246,59.7509281503789,0.828728900423067,0.114814448164607,0,0.393373244878272,59.1071492908709,57.2223954685802,90.2002234553383,55.5329053682391,109.984797306376,279.784124814406,143.899274663932,101.91231240021,868.299432646329,21.6757150035082,70.2365683396795,33.8985443149901,27.4255082946479,44.9988256991578,0.219259876645935,0.261435451024901,0.512900250232778,6.23227826829441,9.76135183992909,21.4325304227262,0.183138929636687,0.082509499920588,1.72279661398852,4.55042172225565,0,1.35339005608971,0.616194468458578,0.921022048356777,6.61615547925747,0,0,1.10794615640931,5.78708231703793,5.2891172915513,1.53752053892085,1.14851441245126,1.71968227454435,0,0,0,0.308033580176089,0,0,0.74129687641568,1.00187420719394,0.372158369359667,0,1.90630193923825,0.255897791311334,0,0,0.784948640199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| |||
|short_description=p1@PDGFB | |||
}} |
Latest revision as of 18:17, 24 September 2015
Short description: | p1@PDGFB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PDGFB_5end |
Coexpression cluster: | C140_Renal_Endothelial_Hepatic_Lymphatic_heart_lung_spleen |
Association with transcript: | -17bp_to_NM_002608, uc003axf.2_5end |
EntrezGene: | PDGFB |
HGNC: | 8800 |
UniProt: | P01127 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.98e-22 | 36 |
meso-epithelial cell | 3.93e-21 | 45 |
lining cell | 1.01e-19 | 58 |
barrier cell | 1.01e-19 | 58 |
endothelial cell of vascular tree | 2.10e-18 | 24 |
blood vessel endothelial cell | 5.25e-14 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.25e-14 | 18 |
epithelial cell | 3.46e-12 | 253 |
kidney cell | 3.95e-12 | 17 |
kidney epithelial cell | 3.95e-12 | 17 |
epithelial cell of nephron | 4.08e-11 | 15 |
kidney cortical cell | 4.25e-09 | 12 |
renal cortical epithelial cell | 4.25e-09 | 12 |
endothelial cell of artery | 6.89e-08 | 9 |
kidney tubule cell | 1.36e-07 | 10 |
nephron tubule epithelial cell | 1.36e-07 | 10 |
squamous epithelial cell | 2.75e-07 | 63 |