FFCP PHASE1:Hg19::chr5:125706998..125707018,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:125706998..125707018,+
|short_description=p4@GRAMD3
|description=CAGE_peak_4_at_GRAMD3_5end
|association_with_transcript=0bp_to_ENST00000506445_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=65983 | |EntrezGene=65983 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24911 | |HGNC=24911 | ||
|TSSclassifier=strong | |||
|UniProt=D6REP5 | |UniProt=D6REP5 | ||
|association_with_transcript=0bp_to_ENST00000506445_5end | |||
|cluster_id=chr5:125706998..125707018,+ | |||
|coexpression_cluster_id=C4458 | |||
|description=CAGE_peak_4_at_GRAMD3_5end | |||
|id=chr5:125706998..125707018,+ | |||
|ontology_enrichment_celltype=CL:0000066!6.92e-15!254;CL:1000497!1.26e-12!18;CL:0002518!1.26e-12!18;CL:0000223!1.67e-12!59;CL:1000449!7.75e-10!16;CL:1000507!1.63e-09!12;CL:1000494!1.63e-09!12;CL:0000181!2.03e-08!12;CL:0000417!2.03e-08!12;CL:0000668!2.03e-08!12;CL:0000414!2.03e-08!12;CL:0000412!2.03e-08!12;CL:0000182!2.03e-08!12;CL:0002681!3.20e-08!13;CL:0002584!3.20e-08!13;CL:0000244!8.66e-07!4;CL:0000731!8.66e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:1000497;1.51e-12;17!CL:0002518;1.51e-12;17!CL:1000507;7.43e-12;10!CL:1000494;7.43e-12;10!CL:0000182;1.61e-10;12!CL:1000449;3.04e-09;15!CL:0000244;3.08e-08;4!CL:0000731;3.08e-08;4!CL:0002681;3.39e-07;12!CL:0002584;3.39e-07;12 | |||
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|ontology_enrichment_disease=DOID:305!7.42e-18!106;DOID:0050687!6.81e-13!143;DOID:299!1.29e-11!25 | |||
|ontology_enrichment_disease_v019=DOID:299;1.28e-11;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.56e-20,106;DOID:0050687,4.89e-15,143;DOID:299,1.42e-11,25 | |||
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| ||
|short_description=p4@GRAMD3 | |||
}} | }} |
Latest revision as of 01:03, 20 September 2015
Short description: | p4@GRAMD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GRAMD3_5end |
Coexpression cluster: | C4458_small_renal_kidney_Hepatocyte_clear_colon_argyrophil |
Association with transcript: | 0bp_to_ENST00000506445_5end |
EntrezGene: | GRAMD3 |
HGNC: | 24911 |
UniProt: | D6REP5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.90e-17 | 253 |
kidney cell | 1.39e-12 | 17 |
kidney epithelial cell | 1.39e-12 | 17 |
endodermal cell | 1.51e-12 | 58 |
kidney tubule cell | 6.88e-12 | 10 |
nephron tubule epithelial cell | 6.88e-12 | 10 |
hepatocyte | 1.38e-10 | 12 |
epithelial cell of nephron | 2.80e-09 | 15 |
transitional epithelial cell | 3.61e-08 | 4 |
urothelial cell | 3.61e-08 | 4 |
kidney cortical cell | 3.32e-07 | 12 |
renal cortical epithelial cell | 3.32e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.56e-20 | 106 |
cell type cancer | 4.89e-15 | 143 |
adenocarcinoma | 1.42e-11 | 25 |