FFCP PHASE1:Hg19::chrX:136648279..136648295,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7547 | |EntrezGene=7547 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12874 | |HGNC=12874 | ||
|TSSclassifier=strong | |||
|UniProt=O60481 | |UniProt=O60481 | ||
|association_with_transcript=-5bp_to_ENST00000287538_5end | |association_with_transcript=-5bp_to_ENST00000287538_5end | ||
|cluster_id=chrX:136648279..136648295,+ | |||
|coexpression_cluster_id=C232 | |coexpression_cluster_id=C232 | ||
|description=CAGE_peak_1_at_ZIC3_5end | |description=CAGE_peak_1_at_ZIC3_5end | ||
|id=chrX:136648279..136648295,+ | |id=chrX:136648279..136648295,+ | ||
|ontology_enrichment_celltype=CL: | |ontology_enrichment_celltype=CL:0000133!2.38e-10!59;CL:0002322!1.89e-09!5;CL:0000221!3.53e-08!71;CL:0002319!8.82e-08!25;CL:0000128!2.90e-07!7;CL:0000126!2.90e-07!7;CL:0000127!2.90e-07!7;CL:0002453!2.90e-07!7;CL:0000047!6.43e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0002322;2.81e-12;5!CL:0000039;3.81e-08;7!CL:0000586;3.81e-08;7!CL:0000064;1.14e-07;3!CL:0000067;1.14e-07;3!CL:0005012;1.14e-07;3!CL:0002304;1.14e-07;3!CL:0002603;1.25e-07;3!CL:0000346;5.14e-07;3!CL:1000428;5.14e-07;3!CL:0000708;6.01e-07;3!CL:0002321;6.10e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.76e-12,5;CL:0000133,1.50e-09,59;CL:0000039,4.23e-08,7;CL:0000586,4.23e-08,7;CL:0000064,1.16e-07,3;CL:0000067,1.16e-07,3;CL:0005012,1.16e-07,3;CL:0002304,1.16e-07,3;CL:0002603,1.30e-07,3;CL:0000346,4.89e-07,3;CL:1000428,4.89e-07,3;CL:0000708,5.20e-07,3;CL:0000047,5.58e-07,8;CL:0000221,5.64e-07,72 | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.41e-12;82!UBERON:0006215;4.30e-08;3!UBERON:0009117;8.67e-08;10!UBERON:0005564;8.67e-08;10 | |||
|ontology_enrichment_disease=DOID:3095!1.20e-08!22;DOID:2994!1.20e-08!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.23e-10;22!DOID:2994;1.23e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.28e-10,22;DOID:2994,1.28e-10,22 | |||
|ontology_enrichment_uberon=UBERON:0001017!1.33e-63!82;UBERON:0000073!1.40e-62!94;UBERON:0001016!1.40e-62!94;UBERON:0005743!5.15e-62!86;UBERON:0001049!6.52e-59!57;UBERON:0005068!6.52e-59!57;UBERON:0006241!6.52e-59!57;UBERON:0007135!6.52e-59!57;UBERON:0003075!1.68e-56!86;UBERON:0007284!1.68e-56!86;UBERON:0002346!3.10e-55!90;UBERON:0002616!3.58e-54!59;UBERON:0000955!2.07e-51!69;UBERON:0006238!2.07e-51!69;UBERON:0004121!1.13e-46!169;UBERON:0000924!1.66e-46!173;UBERON:0006601!1.66e-46!173;UBERON:0002780!3.38e-39!41;UBERON:0001890!3.38e-39!41;UBERON:0006240!3.38e-39!41;UBERON:0003080!5.42e-38!42;UBERON:0003056!6.03e-38!61;UBERON:0000033!9.03e-36!123;UBERON:0002020!1.30e-33!34;UBERON:0003528!1.30e-33!34;UBERON:0001893!3.28e-33!34;UBERON:0000153!3.60e-33!129;UBERON:0007811!3.60e-33!129;UBERON:0002791!3.10e-32!33;UBERON:0001869!7.38e-31!32;UBERON:0000956!9.30e-23!25;UBERON:0000203!9.30e-23!25;UBERON:0003076!5.17e-22!15;UBERON:0003057!5.17e-22!15;UBERON:0007023!1.24e-20!115;UBERON:0002619!5.35e-20!22;UBERON:0001950!5.41e-20!20;UBERON:0004732!1.19e-19!13;UBERON:0004733!2.06e-18!12;UBERON:0002028!2.06e-18!12;UBERON:0007277!2.06e-18!12;UBERON:0002680!1.62e-14!9;UBERON:0001895!1.62e-14!9;UBERON:0010092!1.62e-14!9;UBERON:0002308!1.81e-12!9;UBERON:0000125!1.81e-12!9;UBERON:0002420!3.97e-12!9;UBERON:0007245!3.97e-12!9;UBERON:0010009!3.97e-12!9;UBERON:0010011!3.97e-12!9;UBERON:0000454!3.97e-12!9;UBERON:0002037!9.74e-11!6;UBERON:0006215!9.74e-11!6;UBERON:0000119!1.16e-10!312;UBERON:0000064!1.90e-10!219;UBERON:0009663!8.31e-10!7;UBERON:0000483!2.55e-09!309;UBERON:0002298!6.63e-09!8;UBERON:0000475!1.26e-08!365;UBERON:0000200!3.14e-08!6;UBERON:0001871!3.45e-08!7;UBERON:0000025!4.37e-08!194;UBERON:0000488!1.99e-07!4;UBERON:0001894!2.57e-07!7;UBERON:0006222!2.57e-07!7;UBERON:0002021!3.63e-07!5;UBERON:0000473!5.77e-07!8;UBERON:0007625!6.81e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;9.25e-29;53!UBERON:0002616;9.25e-29;53!UBERON:0004732;6.74e-26;13!UBERON:0004733;2.89e-24;12!UBERON:0002028;2.89e-24;12!UBERON:0001017;2.60e-23;75!UBERON:0003528;3.85e-23;34!UBERON:0002020;3.85e-23;34!UBERON:0002780;4.09e-23;41!UBERON:0001890;4.09e-23;41!UBERON:0002791;1.32e-22;32!UBERON:0001016;8.27e-22;83!UBERON:0001893;2.56e-21;34!UBERON:0000955;4.28e-21;68!UBERON:0001869;2.28e-20;32!UBERON:0002680;4.93e-19;9!UBERON:0001895;4.93e-19;9!UBERON:0002619;1.76e-17;22!UBERON:0001950;5.50e-17;20!UBERON:0000125;1.45e-16;9!UBERON:0002308;1.45e-16;9!UBERON:0002420;3.53e-16;9!UBERON:0007245;3.53e-16;9!UBERON:0010009;3.53e-16;9!UBERON:0010011;3.53e-16;9!UBERON:0000454;3.53e-16;9!UBERON:0000956;5.43e-15;25!UBERON:0000203;5.43e-15;25!UBERON:0002037;4.79e-14;6!UBERON:0009663;5.59e-13;7!UBERON:0002298;5.98e-12;6!UBERON:0010314;5.17e-10;132!UBERON:0000488;1.47e-09;4!UBERON:0002021;2.10e-09;5!UBERON:0007625;2.67e-09;11!UBERON:0002104;1.36e-08;21!UBERON:0002784;1.56e-08;4!UBERON:0000369;3.88e-08;4!UBERON:0002435;3.88e-08;4!UBERON:0000204;3.88e-08;4!UBERON:0001778;1.14e-07;3!UBERON:0001775;1.14e-07;3!UBERON:0000970;1.86e-07;20!UBERON:0002067;2.52e-07;9!UBERON:0001032;3.05e-07;24!UBERON:0004456;3.05e-07;24!UBERON:0007023;3.25e-07;114!UBERON:0001801;4.91e-07;14!UBERON:0000412;5.14e-07;3!UBERON:0001992;5.14e-07;3!UBERON:0001894;5.19e-07;7!UBERON:0003210;6.01e-07;3!UBERON:0000473;6.17e-07;8!UBERON:0001896;6.73e-07;3!UBERON:0005290;6.73e-07;3!UBERON:0006876;7.15e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.35e-60,89;UBERON:0001017,2.68e-60,81;UBERON:0001049,1.10e-56,56;UBERON:0005068,1.10e-56,56;UBERON:0006241,1.10e-56,56;UBERON:0007135,1.10e-56,56;UBERON:0003075,1.58e-55,82;UBERON:0007284,1.58e-55,82;UBERON:0002346,1.05e-54,86;UBERON:0000073,9.31e-52,53;UBERON:0002616,9.31e-52,53;UBERON:0010371,1.42e-48,104;UBERON:0000955,1.17e-46,68;UBERON:0006238,1.17e-46,68;UBERON:0004121,1.05e-42,171;UBERON:0000924,1.05e-42,171;UBERON:0006601,1.05e-42,171;UBERON:0010314,1.37e-42,132;UBERON:0003056,3.79e-36,61;UBERON:0002780,9.18e-31,41;UBERON:0001890,9.18e-31,41;UBERON:0003080,9.18e-31,41;UBERON:0006240,9.18e-31,41;UBERON:0003076,2.16e-29,15;UBERON:0003057,2.16e-29,15;UBERON:0003528,9.62e-28,34;UBERON:0002020,9.62e-28,34;UBERON:0004732,3.58e-26,13;UBERON:0001893,3.81e-25,34;UBERON:0002791,1.57e-24,32;UBERON:0004733,1.75e-24,12;UBERON:0002028,1.75e-24,12;UBERON:0007277,1.75e-24,12;UBERON:0001869,2.45e-22,32;UBERON:0002680,3.56e-19,9;UBERON:0001895,3.56e-19,9;UBERON:0010092,3.56e-19,9;UBERON:0007023,6.53e-19,114;UBERON:0011216,2.16e-17,223;UBERON:0002619,2.35e-17,22;UBERON:0001950,7.47e-17,20;UBERON:0000125,2.17e-16,9;UBERON:0002308,2.17e-16,9;UBERON:0002420,6.34e-16,9;UBERON:0007245,6.34e-16,9;UBERON:0010009,6.34e-16,9;UBERON:0010011,6.34e-16,9;UBERON:0000454,6.34e-16,9;UBERON:0000956,6.99e-15,25;UBERON:0000203,6.99e-15,25;UBERON:0002037,4.91e-14,6;UBERON:0006215,4.91e-14,6;UBERON:0009663,9.03e-13,7;UBERON:0002298,3.62e-12,6;UBERON:0000119,2.19e-10,309;UBERON:0000488,1.53e-09,4;UBERON:0007625,2.64e-09,11;UBERON:0002021,3.46e-09,5;UBERON:0000483,7.64e-09,306;UBERON:0000970,1.29e-08,21;UBERON:0002104,1.29e-08,21;UBERON:0002784,1.70e-08,4;UBERON:0000025,2.20e-08,192;UBERON:0000369,4.88e-08,4;UBERON:0002435,4.88e-08,4;UBERON:0000204,4.88e-08,4;UBERON:0010082,4.88e-08,4;UBERON:0001778,1.16e-07,3;UBERON:0001775,1.16e-07,3;UBERON:0000922,1.43e-07,592;UBERON:0005085,1.56e-07,31;UBERON:0000019,2.15e-07,20;UBERON:0000047,2.15e-07,20;UBERON:0010312,2.15e-07,20;UBERON:0004088,2.15e-07,20;UBERON:0010230,2.15e-07,20;UBERON:0003072,2.15e-07,20;UBERON:0004128,2.15e-07,20;UBERON:0003071,2.15e-07,20;UBERON:0000020,2.91e-07,24;UBERON:0001032,2.91e-07,24;UBERON:0004456,2.91e-07,24;UBERON:0002067,2.93e-07,9;UBERON:0004016,2.93e-07,9;UBERON:0010083,2.93e-07,9;UBERON:0001801,4.87e-07,14;UBERON:0000412,4.89e-07,3;UBERON:0001992,4.89e-07,3;UBERON:0001894,5.09e-07,7;UBERON:0006222,5.09e-07,7;UBERON:0003210,5.20e-07,3;UBERON:0001896,5.66e-07,3;UBERON:0005290,5.66e-07,3;UBERON:0010096,5.66e-07,3;UBERON:0000473,5.95e-07,8;UBERON:0006876,7.44e-07,11;UBERON:0000988,7.71e-07,3 | |||
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| ||
|short_description=p1@ZIC3 | |short_description=p1@ZIC3 | ||
}} | }} |
Latest revision as of 15:47, 19 September 2015
Short description: | p1@ZIC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ZIC3_5end |
Coexpression cluster: | C232_teratocarcinoma_HES3GFP_H9_iPS_testicular_neuroblastoma_cerebellum |
Association with transcript: | -5bp_to_ENST00000287538_5end |
EntrezGene: | ZIC3 |
HGNC: | 12874 |
UniProt: | O60481 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.76e-12 | 5 |
neurectodermal cell | 1.50e-09 | 59 |
germ line cell | 4.23e-08 | 7 |
germ cell | 4.23e-08 | 7 |
ciliated cell | 1.16e-07 | 3 |
ciliated epithelial cell | 1.16e-07 | 3 |
multi-ciliated epithelial cell | 1.16e-07 | 3 |
non-pigmented ciliary epithelial cell | 1.16e-07 | 3 |
astrocyte of the cerebellum | 1.30e-07 | 3 |
hair follicle dermal papilla cell | 4.89e-07 | 3 |
stem cell of epidermis | 4.89e-07 | 3 |
leptomeningeal cell | 5.20e-07 | 3 |
neuronal stem cell | 5.58e-07 | 8 |
ectodermal cell | 5.64e-07 | 72 |
Ontology term | p-value | n |
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